Articles | Volume 7, issue 11
https://doi.org/10.5194/bg-7-3731-2010
© Author(s) 2010. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Special issue:
https://doi.org/10.5194/bg-7-3731-2010
© Author(s) 2010. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
18 Nov 2010
Modelling and quantifying the effect of heterogeneity in soil physical conditions on fungal growth
R. Pajor
The SIMBIOS Centre, University of Abertay Dundee, Kydd Building, Dundee, DD1 1HG, UK
R. Falconer
The SIMBIOS Centre, University of Abertay Dundee, Kydd Building, Dundee, DD1 1HG, UK
S. Hapca
The SIMBIOS Centre, University of Abertay Dundee, Kydd Building, Dundee, DD1 1HG, UK
W. Otten
The SIMBIOS Centre, University of Abertay Dundee, Kydd Building, Dundee, DD1 1HG, UK
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Cited
44 citations as recorded by crossref.
- Habitat geometry in artificial microstructure affects bacterial and fungal growth, interactions, and substrate degradation C. Arellano-Caicedo et al. 10.1038/s42003-021-02736-4
- Analysis of fungal networks L. Heaton et al. 10.1016/j.fbr.2012.02.001
- Pore-Scale Monitoring of the Effect of Microarchitecture on Fungal Growth in a Two-Dimensional Soil-Like Micromodel R. Soufan et al. 10.3389/fenvs.2018.00068
- The use of PET/CT scanning technique for 3D visualization and quantification of real-time soil/plant interactions A. Garbout et al. 10.1007/s11104-011-0983-8
- Effects of Soil Compaction Stress Combined with Drought on Soil Pore Structure, Root System Development, and Maize Growth in Early Stage X. Zhu et al. 10.3390/plants13223185
- Effects of porous clay ceramic rates on aeration porosity characteristics in a structurally degraded soil under greenhouse vegetable production Q. YU et al. 10.1016/S1002-0160(21)60006-1
- Combining X-ray CT and 3D printing technology to produce microcosms with replicable, complex pore geometries W. Otten et al. 10.1016/j.soilbio.2012.04.008
- Increasing soil carbon storage: mechanisms, effects of agricultural practices and proxies. A review M. Dignac et al. 10.1007/s13593-017-0421-2
- Accounting for soil architecture and microbial dynamics in microscale models: Current practices in soil science and the path ahead V. Pot et al. 10.1111/ejss.13142
- Quantification of the pore size distribution of soils: Assessment of existing software using tomographic and synthetic 3D images A. Houston et al. 10.1016/j.geoderma.2017.03.025
- Assessing the effects of land use change from rice to vegetable on soil structural quality using X-ray CT M. Wang et al. 10.1016/j.still.2019.104343
- Dynamic shear modulus and damping of lightweight sand-mycelium soil L. Gou & S. Li 10.1007/s11440-023-01885-6
- Understanding the joint impacts of soil architecture and microbial dynamics on soil functions: Insights derived from microscale models V. Pot et al. 10.1111/ejss.13256
- Pore detection in 3‐D CT soil samples through an improved sub‐segmentation method B. Ojeda‐Magaña et al. 10.1111/ejss.12728
- Volatile‐mediated antagonism of soil bacterial communities against fungi X. Li et al. 10.1111/1462-2920.14808
- Combining global and local scaling methods to detect soil pore space J. Martín-Sotoca et al. 10.1016/j.gexplo.2017.06.017
- Effect of long-term organic fertilization on the soil pore characteristics of greenhouse vegetable fields converted from rice-wheat rotation fields L. Xu et al. 10.1016/j.scitotenv.2018.03.070
- Scaling properties of binary and greyscale images in the context of X-ray soil tomography I. Torre et al. 10.1016/j.geoderma.2020.114205
- Three dimensional quantification of biological samples using micro-computer aided tomography (microCT) O. Lilje et al. 10.1016/j.mimet.2012.10.006
- The spatial scaling of saprotrophic fungal beta diversity in decomposing leaves L. Feinstein & C. Blackwood 10.1111/mec.12160
- New segmentation method based on fractal properties using singularity maps J. Martín-Sotoca et al. 10.1016/j.geoderma.2016.09.005
- The Mycelium as a Network M. Fricker et al. 10.1128/microbiolspec.FUNK-0033-2017
- Emergent Properties of Microbial Activity in Heterogeneous Soil Microenvironments: Different Research Approaches Are Slowly Converging, Yet Major Challenges Remain P. Baveye et al. 10.3389/fmicb.2018.01929
- Local 3D segmentation of soil pore space based on fractal properties using singularity maps J. Martín-Sotoca et al. 10.1016/j.geoderma.2016.11.029
- Control of Pore Geometry in Soil Microcosms and Its Effect on the Growth and Spread of Pseudomonas and Bacillus sp. A. Juyal et al. 10.3389/fenvs.2018.00073
- Adaptive-window indicator kriging: A thresholding method for computed tomography images of porous media A. Houston et al. 10.1016/j.cageo.2012.11.016
- Soil macro- and microstructure as affected by different tillage systems and their effects on maize root growth N. Dal Ferro et al. 10.1016/j.still.2014.02.003
- Shift of fungal community composition in response to exogenous C application associated with soil properties after 10-year field experiment in black soil of China Y. Qiao et al. 10.1007/s11368-022-03226-8
- Detection and quantification of pore, solid and gravel spaces in CT images of a 3D soil sample B. Ojeda-Magaña et al. 10.1016/j.apm.2020.04.021
- Reviews and syntheses: The mechanisms underlying carbon storage in soil I. Basile-Doelsch et al. 10.5194/bg-17-5223-2020
- Three-Dimensional Mapping of Soil Chemical Characteristics at Micrometric Scale by Combining 2D SEM-EDX Data and 3D X-Ray CT Images S. Hapca et al. 10.1371/journal.pone.0137205
- Automated statistical method to align 2D chemical maps with 3D X-ray computed micro-tomographic images of soils S. Hapca et al. 10.1016/j.geoderma.2011.05.018
- New Local Thresholding Method for Soil Images by Minimizing Grayscale Intra‐Class Variance S. Hapca et al. 10.2136/vzj2012.0172
- Effect of scanning and image reconstruction settings in X-ray computed microtomography on quality and segmentation of 3D soil images A. Houston et al. 10.1016/j.geoderma.2013.05.017
- Effects of different soil structures on the decomposition of native and added organic carbon S. Juarez et al. 10.1016/j.ejsobi.2013.06.005
- Microhabitat properties explain variations in soil nematode communities across climate conditions in cropland, but not in grassland M. Wu et al. 10.1016/j.soilbio.2024.109657
- Seeing space: visualization and quantification of plant leaf structure using X-ray micro-computed tomography R. Pajor et al. 10.1093/jxb/ers392
- Physical, Chemical and Biological Effects on Soil Bacterial Dynamics in Microscale Models S. König et al. 10.3389/fevo.2020.00053
- Mycorrhizal contribution to phosphorus nutrition of cotton in low and highly sodic soils using dual isotope labelling (32P and 33P) S. Eskandari et al. 10.1016/j.soilbio.2016.11.004
- Changes in soil macropores: Superposition of the roles of organic nutrient amendments and the greenhouse pattern in vegetable plantations L. Xu et al. 10.1111/sum.12490
- Surfactants expressed by soil pseudomonads alter local soil-water distribution, suggesting a hydrological role for these compounds J. Fechtner et al. 10.1111/j.1574-6941.2011.01141.x
- Modelling three-dimensional fungal growth in response to environmental stimuli G. Vidal-Diez de Ulzurrun et al. 10.1016/j.jtbi.2016.11.020
- Multiscaling properties of soil images I. Torre et al. 10.1016/j.biosystemseng.2016.11.006
- Automated image-based analysis of spatio-temporal fungal dynamics G. Vidal-Diez de Ulzurrun et al. 10.1016/j.fgb.2015.09.004
40 citations as recorded by crossref.
- Habitat geometry in artificial microstructure affects bacterial and fungal growth, interactions, and substrate degradation C. Arellano-Caicedo et al. 10.1038/s42003-021-02736-4
- Analysis of fungal networks L. Heaton et al. 10.1016/j.fbr.2012.02.001
- Pore-Scale Monitoring of the Effect of Microarchitecture on Fungal Growth in a Two-Dimensional Soil-Like Micromodel R. Soufan et al. 10.3389/fenvs.2018.00068
- The use of PET/CT scanning technique for 3D visualization and quantification of real-time soil/plant interactions A. Garbout et al. 10.1007/s11104-011-0983-8
- Effects of Soil Compaction Stress Combined with Drought on Soil Pore Structure, Root System Development, and Maize Growth in Early Stage X. Zhu et al. 10.3390/plants13223185
- Effects of porous clay ceramic rates on aeration porosity characteristics in a structurally degraded soil under greenhouse vegetable production Q. YU et al. 10.1016/S1002-0160(21)60006-1
- Combining X-ray CT and 3D printing technology to produce microcosms with replicable, complex pore geometries W. Otten et al. 10.1016/j.soilbio.2012.04.008
- Increasing soil carbon storage: mechanisms, effects of agricultural practices and proxies. A review M. Dignac et al. 10.1007/s13593-017-0421-2
- Accounting for soil architecture and microbial dynamics in microscale models: Current practices in soil science and the path ahead V. Pot et al. 10.1111/ejss.13142
- Quantification of the pore size distribution of soils: Assessment of existing software using tomographic and synthetic 3D images A. Houston et al. 10.1016/j.geoderma.2017.03.025
- Assessing the effects of land use change from rice to vegetable on soil structural quality using X-ray CT M. Wang et al. 10.1016/j.still.2019.104343
- Dynamic shear modulus and damping of lightweight sand-mycelium soil L. Gou & S. Li 10.1007/s11440-023-01885-6
- Understanding the joint impacts of soil architecture and microbial dynamics on soil functions: Insights derived from microscale models V. Pot et al. 10.1111/ejss.13256
- Pore detection in 3‐D CT soil samples through an improved sub‐segmentation method B. Ojeda‐Magaña et al. 10.1111/ejss.12728
- Volatile‐mediated antagonism of soil bacterial communities against fungi X. Li et al. 10.1111/1462-2920.14808
- Combining global and local scaling methods to detect soil pore space J. Martín-Sotoca et al. 10.1016/j.gexplo.2017.06.017
- Effect of long-term organic fertilization on the soil pore characteristics of greenhouse vegetable fields converted from rice-wheat rotation fields L. Xu et al. 10.1016/j.scitotenv.2018.03.070
- Scaling properties of binary and greyscale images in the context of X-ray soil tomography I. Torre et al. 10.1016/j.geoderma.2020.114205
- Three dimensional quantification of biological samples using micro-computer aided tomography (microCT) O. Lilje et al. 10.1016/j.mimet.2012.10.006
- The spatial scaling of saprotrophic fungal beta diversity in decomposing leaves L. Feinstein & C. Blackwood 10.1111/mec.12160
- New segmentation method based on fractal properties using singularity maps J. Martín-Sotoca et al. 10.1016/j.geoderma.2016.09.005
- The Mycelium as a Network M. Fricker et al. 10.1128/microbiolspec.FUNK-0033-2017
- Emergent Properties of Microbial Activity in Heterogeneous Soil Microenvironments: Different Research Approaches Are Slowly Converging, Yet Major Challenges Remain P. Baveye et al. 10.3389/fmicb.2018.01929
- Local 3D segmentation of soil pore space based on fractal properties using singularity maps J. Martín-Sotoca et al. 10.1016/j.geoderma.2016.11.029
- Control of Pore Geometry in Soil Microcosms and Its Effect on the Growth and Spread of Pseudomonas and Bacillus sp. A. Juyal et al. 10.3389/fenvs.2018.00073
- Adaptive-window indicator kriging: A thresholding method for computed tomography images of porous media A. Houston et al. 10.1016/j.cageo.2012.11.016
- Soil macro- and microstructure as affected by different tillage systems and their effects on maize root growth N. Dal Ferro et al. 10.1016/j.still.2014.02.003
- Shift of fungal community composition in response to exogenous C application associated with soil properties after 10-year field experiment in black soil of China Y. Qiao et al. 10.1007/s11368-022-03226-8
- Detection and quantification of pore, solid and gravel spaces in CT images of a 3D soil sample B. Ojeda-Magaña et al. 10.1016/j.apm.2020.04.021
- Reviews and syntheses: The mechanisms underlying carbon storage in soil I. Basile-Doelsch et al. 10.5194/bg-17-5223-2020
- Three-Dimensional Mapping of Soil Chemical Characteristics at Micrometric Scale by Combining 2D SEM-EDX Data and 3D X-Ray CT Images S. Hapca et al. 10.1371/journal.pone.0137205
- Automated statistical method to align 2D chemical maps with 3D X-ray computed micro-tomographic images of soils S. Hapca et al. 10.1016/j.geoderma.2011.05.018
- New Local Thresholding Method for Soil Images by Minimizing Grayscale Intra‐Class Variance S. Hapca et al. 10.2136/vzj2012.0172
- Effect of scanning and image reconstruction settings in X-ray computed microtomography on quality and segmentation of 3D soil images A. Houston et al. 10.1016/j.geoderma.2013.05.017
- Effects of different soil structures on the decomposition of native and added organic carbon S. Juarez et al. 10.1016/j.ejsobi.2013.06.005
- Microhabitat properties explain variations in soil nematode communities across climate conditions in cropland, but not in grassland M. Wu et al. 10.1016/j.soilbio.2024.109657
- Seeing space: visualization and quantification of plant leaf structure using X-ray micro-computed tomography R. Pajor et al. 10.1093/jxb/ers392
- Physical, Chemical and Biological Effects on Soil Bacterial Dynamics in Microscale Models S. König et al. 10.3389/fevo.2020.00053
- Mycorrhizal contribution to phosphorus nutrition of cotton in low and highly sodic soils using dual isotope labelling (32P and 33P) S. Eskandari et al. 10.1016/j.soilbio.2016.11.004
- Changes in soil macropores: Superposition of the roles of organic nutrient amendments and the greenhouse pattern in vegetable plantations L. Xu et al. 10.1111/sum.12490
4 citations as recorded by crossref.
- Surfactants expressed by soil pseudomonads alter local soil-water distribution, suggesting a hydrological role for these compounds J. Fechtner et al. 10.1111/j.1574-6941.2011.01141.x
- Modelling three-dimensional fungal growth in response to environmental stimuli G. Vidal-Diez de Ulzurrun et al. 10.1016/j.jtbi.2016.11.020
- Multiscaling properties of soil images I. Torre et al. 10.1016/j.biosystemseng.2016.11.006
- Automated image-based analysis of spatio-temporal fungal dynamics G. Vidal-Diez de Ulzurrun et al. 10.1016/j.fgb.2015.09.004
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