Articles | Volume 15, issue 5
https://doi.org/10.5194/bg-15-1559-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-15-1559-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Distribution and drivers of symbiotic and free-living diazotrophic cyanobacteria in the western tropical South Pacific
Stockholm University, Department of Ecology, Environment and Plant
Sciences, Stockholm, Sweden
Andrea Caputo
Stockholm University, Department of Ecology, Environment and Plant
Sciences, Stockholm, Sweden
Carlo Berg
Science for Life Laboratory/Department of Biology and Environmental
Science, Linnaeus University, Kalmar, Sweden
Sophie Bonnet
Aix Marseille Université, Centre National de la Recherche
Scientifique. Marseille/Noumea, New Caledonia, France
Mediterranean Institute of Oceanography, Institut de Recherche pour
le Dévelopement, Marseille, France
Rachel A. Foster
Stockholm University, Department of Ecology, Environment and Plant
Sciences, Stockholm, Sweden
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- New insights into the distributions of nitrogen fixation and diazotrophs revealed by high-resolution sensing and sampling methods W. Tang et al. 10.1038/s41396-020-0703-6
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- Environmental bacteria as triggers to brain disease: Possible mechanisms of toxicity and associated human risk A. Courtier et al. 10.1016/j.lfs.2022.120689
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- Temperate southern Australian coastal waters are characterised by surprisingly high rates of nitrogen fixation and diversity of diazotrophs L. Messer et al. 10.7717/peerj.10809
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- Review of Marine Cyanobacteria and the Aspects Related to Their Roles: Chemical, Biological Properties, Nitrogen Fixation and Climate Change H. El-Seedi et al. 10.3390/md21080439
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- Remote sensing of <i>Trichodesmium</i> spp. mats in the western tropical South Pacific G. Rousset et al. 10.5194/bg-15-5203-2018
- Metagenomics reveals the genetic diversity between sublineages of UCYN-A and their algal host plastids E. Kantor et al. 10.1093/ismeco/ycae150
- Global oceanic diazotroph database version 2 and elevated estimate of global oceanic N2 fixation Z. Shao et al. 10.5194/essd-15-3673-2023
- Upper Ocean Biogeochemistry of the Oligotrophic North Pacific Subtropical Gyre: From Nutrient Sources to Carbon Export M. Dai et al. 10.1029/2022RG000800
- A Short Comparison of Two Marine Planktonic Diazotrophic Symbioses Highlights an Un-quantified Disparity A. Caputo et al. 10.3389/fmars.2018.00002
- Preface: The Oligotrophy to the UlTra-oligotrophy PACific Experiment (OUTPACE cruise, 18 February to 3 April 2015) T. Moutin et al. 10.5194/bg-14-3207-2017
- <i>Trichodesmium</i> physiological ecology and phosphate reduction in the western tropical South Pacific K. Frischkorn et al. 10.5194/bg-15-5761-2018
46 citations as recorded by crossref.
- Effect of mesoscale eddies on diazotroph community structure and nitrogen fixation rates in the South China Sea J. Liu et al. 10.1016/j.rsma.2020.101106
- Distribution of the N2‐fixing cyanobacterium Candidatus Atelocyanobacterium thalassa in the Mexican Pacific upwelling system under two contrasting El Niño Southern Oscillation conditions C. Vieyra‐Mexicano et al. 10.1111/1758-2229.13237
- Data‐Driven Modeling of the Distribution of Diazotrophs in the Global Ocean W. Tang & N. Cassar 10.1029/2019GL084376
- Crocosphaera watsonii – A widespread nitrogen‐fixing unicellular marine cyanobacterium T. Masuda et al. 10.1111/jpy.13450
- Silicon cycle in the tropical South Pacific: contribution to the global Si cycle and evidence for an active pico-sized siliceous plankton K. Leblanc et al. 10.5194/bg-15-5595-2018
- The composition and distribution of semi-labile dissolved organic matter across the southwest Pacific C. Panagiotopoulos et al. 10.5194/bg-16-105-2019
- The response of diazotrophs to nutrient amendment in the South China Sea and western North Pacific Z. Wen et al. 10.5194/bg-19-5237-2022
- Transfer of diazotroph-derived nitrogen to the planktonic food web across gradients of N<sub>2</sub> fixation activity and diversity in the western tropical South Pacific Ocean M. Caffin et al. 10.5194/bg-15-3795-2018
- Meso-zooplankton structure and functioning in the western tropical South Pacific along the 20th parallel south during the OUTPACE survey (February–April 2015) F. Carlotti et al. 10.5194/bg-15-7273-2018
- Processes and Microorganisms Involved in the Marine Nitrogen Cycle: Knowledge and Gaps S. Pajares & R. Ramos 10.3389/fmars.2019.00739
- Aphotic N<sub>2</sub> fixation along an oligotrophic to ultraoligotrophic transect in the western tropical South Pacific Ocean M. Benavides et al. 10.5194/bg-15-3107-2018
- Microbial community structure in the western tropical South Pacific N. Bock et al. 10.5194/bg-15-3909-2018
- New insights into the distributions of nitrogen fixation and diazotrophs revealed by high-resolution sensing and sampling methods W. Tang et al. 10.1038/s41396-020-0703-6
- In-depth characterization of diazotroph activity across the western tropical South Pacific hotspot of N<sub>2</sub> fixation (OUTPACE cruise) S. Bonnet et al. 10.5194/bg-15-4215-2018
- Heterotrophic Bacteria Dominate the Diazotrophic Community in the Eastern Indian Ocean (EIO) during Pre-Southwest Monsoon C. Wu et al. 10.1007/s00248-019-01355-1
- Distributions and Abundances of Sublineages of the N2-Fixing Cyanobacterium Candidatus Atelocyanobacterium thalassa (UCYN-A) in the New Caledonian Coral Lagoon B. Henke et al. 10.3389/fmicb.2018.00554
- Environmental bacteria as triggers to brain disease: Possible mechanisms of toxicity and associated human risk A. Courtier et al. 10.1016/j.lfs.2022.120689
- Distribution and rates of nitrogen fixation in the western tropical South Pacific Ocean constrained by nitrogen isotope budgets A. Knapp et al. 10.5194/bg-15-2619-2018
- Modelling N<sub>2</sub> fixation related to <i>Trichodesmium</i> sp.: driving processes and impacts on primary production in the tropical Pacific Ocean C. Dutheil et al. 10.5194/bg-15-4333-2018
- Temperate southern Australian coastal waters are characterised by surprisingly high rates of nitrogen fixation and diversity of diazotrophs L. Messer et al. 10.7717/peerj.10809
- Cyanobacterial Diazotroph Distributions in the Western South Atlantic A. Detoni et al. 10.3389/fmars.2022.856643
- Contrasting Roles of DOP as a Source of Phosphorus and Energy for Marine Diazotrophs A. Filella et al. 10.3389/fmars.2022.923765
- UCYN‐A3, a newly characterized open ocean sublineage of the symbiotic N2‐fixing cyanobacterium Candidatus Atelocyanobacterium thalassa F. Cornejo‐Castillo et al. 10.1111/1462-2920.14429
- Dynamics and controls of heterotrophic prokaryotic production in the western tropical South Pacific Ocean: links with diazotrophic and photosynthetic activity F. Van Wambeke et al. 10.5194/bg-15-2669-2018
- Review of Marine Cyanobacteria and the Aspects Related to Their Roles: Chemical, Biological Properties, Nitrogen Fixation and Climate Change H. El-Seedi et al. 10.3390/md21080439
- Programmed cell death in diazotrophs and the fate of organic matter in the western tropical South Pacific Ocean during the OUTPACE cruise D. Spungin et al. 10.5194/bg-15-3893-2018
- Biogeographic drivers of diazotrophs in the western Pacific Ocean M. Chen et al. 10.1002/lno.11123
- N<sub>2</sub> fixation as a dominant new N source in the western tropical South Pacific Ocean (OUTPACE cruise) M. Caffin et al. 10.5194/bg-15-2565-2018
- Constraining the sources of nitrogen fueling export production in the Gulf of Mexico using nitrogen isotope budgets A. Knapp et al. 10.1093/plankt/fbab049
- Quantifying N2 fixation and its contribution to export production near the Tonga-Kermadec Arc using nitrogen isotope budgets H. Forrer et al. 10.3389/fmars.2023.1249115
- Dissolved organic matter stimulates N2 fixation and nifH gene expression in Trichodesmium M. Benavides et al. 10.1093/femsle/fnaa034
- Transcriptional responses of Trichodesmium to natural inverse gradients of Fe and P availability E. Cerdan-Garcia et al. 10.1038/s41396-021-01151-1
- Comparison of Diazotrophic Composition and Distribution in the South China Sea and the Western Pacific Ocean C. Ding et al. 10.3390/biology10060555
- Global Nitrogen Cycle: Critical Enzymes, Organisms, and Processes for Nitrogen Budgets and Dynamics X. Zhang et al. 10.1021/acs.chemrev.9b00613
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- Screening plant growth-promoting bacteria from the rhizosphere of invasive weed Ageratina adenophora for crop growth Y. Xia et al. 10.7717/peerj.15064
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- Assessing the contribution of diazotrophs to microbial Fe uptake using a group specific approach in the Western Tropical South Pacific Ocean C. Lory et al. 10.1038/s43705-022-00122-7
- Plankton community structure in response to hydrothermal iron inputs along the Tonga-Kermadec arc Z. Mériguet et al. 10.3389/fmars.2023.1232923
- Seasonal Shifts in Diazotrophs Players: Patterns Observed Over a Two-Year Time Series in the New Caledonian Lagoon (Western Tropical South Pacific Ocean) E. Saulia et al. 10.3389/fmars.2020.581755
- Diazotrophy as the main driver of the oligotrophy gradient in the western tropical South Pacific Ocean: results from a one-dimensional biogeochemical–physical coupled model A. Gimenez et al. 10.5194/bg-15-6573-2018
- Unexpected presence of the nitrogen‐fixing symbiotic cyanobacterium UCYN‐A in Monterey Bay, California A. Cabello et al. 10.1111/jpy.13045
- Remote sensing of <i>Trichodesmium</i> spp. mats in the western tropical South Pacific G. Rousset et al. 10.5194/bg-15-5203-2018
- Metagenomics reveals the genetic diversity between sublineages of UCYN-A and their algal host plastids E. Kantor et al. 10.1093/ismeco/ycae150
- Global oceanic diazotroph database version 2 and elevated estimate of global oceanic N2 fixation Z. Shao et al. 10.5194/essd-15-3673-2023
- Upper Ocean Biogeochemistry of the Oligotrophic North Pacific Subtropical Gyre: From Nutrient Sources to Carbon Export M. Dai et al. 10.1029/2022RG000800
3 citations as recorded by crossref.
- A Short Comparison of Two Marine Planktonic Diazotrophic Symbioses Highlights an Un-quantified Disparity A. Caputo et al. 10.3389/fmars.2018.00002
- Preface: The Oligotrophy to the UlTra-oligotrophy PACific Experiment (OUTPACE cruise, 18 February to 3 April 2015) T. Moutin et al. 10.5194/bg-14-3207-2017
- <i>Trichodesmium</i> physiological ecology and phosphate reduction in the western tropical South Pacific K. Frischkorn et al. 10.5194/bg-15-5761-2018
Discussed (final revised paper)
Latest update: 25 Dec 2024
Short summary
We successfully performed quantitative PCR at sea. The qPCR data were procured within 3 h and used in decisions on further sampling on site. We designed and applied a new primer and probe set for quantifying the UCYN-A1 host and observed discrepancies between host and symbiont, which contradict previous studies. Lastly, we observed a clear vertical separation between a subsurface group (UCYN-A with hosts) and a surface group (remaining diazotrophs), mainly separated by temperature.
We successfully performed quantitative PCR at sea. The qPCR data were procured within 3 h and...
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Final-revised paper
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