Articles | Volume 18, issue 10
https://doi.org/10.5194/bg-18-3147-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-18-3147-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
26 May 2021
Research article |
| 26 May 2021
| 26 May 2021
Simulating measurable ecosystem carbon and nitrogen dynamics with the mechanistically defined MEMS 2.0 model
Natural Resources Ecology Laboratory, Colorado State University, Fort Collins, CO 80523, USA
Jocelyn M. Lavallee
Natural Resources Ecology Laboratory, Colorado State University, Fort Collins, CO 80523, USA
Department of Soil and Crop Sciences Colorado State University, Fort Collins, CO 80523, USA
Andy D. Robertson
Shell International Exploration and Production, Shell Technology Center Houston, 3333 Highway 6 South, Houston, TX 77082-3101, USA
Rebecca Even
Department of Soil and Crop Sciences Colorado State University, Fort Collins, CO 80523, USA
Stephen M. Ogle
Natural Resources Ecology Laboratory, Colorado State University, Fort Collins, CO 80523, USA
Department of Ecosystem Science and Sustainability, Colorado State University, Fort Collins, CO 80523, USA
Keith Paustian
Natural Resources Ecology Laboratory, Colorado State University, Fort Collins, CO 80523, USA
Department of Soil and Crop Sciences Colorado State University, Fort Collins, CO 80523, USA
M. Francesca Cotrufo
Natural Resources Ecology Laboratory, Colorado State University, Fort Collins, CO 80523, USA
Department of Soil and Crop Sciences Colorado State University, Fort Collins, CO 80523, USA
Viewed
Total article views: 6,710 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 07 Jan 2021)
| HTML | XML | Total | Supplement | BibTeX | EndNote | |
|---|---|---|---|---|---|---|
| 4,314 | 2,297 | 99 | 6,710 | 666 | 77 | 134 |
- HTML: 4,314
- PDF: 2,297
- XML: 99
- Total: 6,710
- Supplement: 666
- BibTeX: 77
- EndNote: 134
Total article views: 5,183 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 26 May 2021)
| HTML | XML | Total | Supplement | BibTeX | EndNote | |
|---|---|---|---|---|---|---|
| 3,412 | 1,689 | 82 | 5,183 | 513 | 73 | 128 |
- HTML: 3,412
- PDF: 1,689
- XML: 82
- Total: 5,183
- Supplement: 513
- BibTeX: 73
- EndNote: 128
Total article views: 1,527 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 07 Jan 2021)
| HTML | XML | Total | Supplement | BibTeX | EndNote | |
|---|---|---|---|---|---|---|
| 902 | 608 | 17 | 1,527 | 153 | 4 | 6 |
- HTML: 902
- PDF: 608
- XML: 17
- Total: 1,527
- Supplement: 153
- BibTeX: 4
- EndNote: 6
Viewed (geographical distribution)
Total article views: 6,710 (including HTML, PDF, and XML)
Thereof 6,451 with geography defined
and 259 with unknown origin.
Total article views: 5,183 (including HTML, PDF, and XML)
Thereof 5,062 with geography defined
and 121 with unknown origin.
Total article views: 1,527 (including HTML, PDF, and XML)
Thereof 1,389 with geography defined
and 138 with unknown origin.
| Country | # | Views | % |
|---|
| Country | # | Views | % |
|---|
| Country | # | Views | % |
|---|
| Total: | 0 |
| HTML: | 0 |
| PDF: | 0 |
| XML: | 0 |
- 1
1
| Total: | 0 |
| HTML: | 0 |
| PDF: | 0 |
| XML: | 0 |
- 1
1
| Total: | 0 |
| HTML: | 0 |
| PDF: | 0 |
| XML: | 0 |
- 1
1
Cited
42 citations as recorded by crossref.
- Unlocking complex soil systems as carbon sinks: multi-pool management as the key G. Angst et al. 10.1038/s41467-023-38700-5
- A soil matrix capacity index to predict mineral-associated but not particulate organic carbon across a range of climate and soil pH A. King et al. 10.1007/s10533-023-01066-3
- Importance of on-farm research for validating process-based models of climate-smart agriculture E. Ellis & K. Paustian 10.1186/s13021-024-00260-6
- Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models A. Brunmayr et al. 10.5194/gmd-17-5961-2024
- Climate change challenges, plant science solutions N. Eckardt et al. 10.1093/plcell/koac303
- Quantity, quality and physical protection of soil carbon associated with sugarcane straw removal in southern Brazil M. Pimentel et al. 10.1016/j.still.2023.105976
- Comparing plant litter molecular diversity assessed from proximate analysis and 13C NMR spectroscopy A. Chakrawal et al. 10.1016/j.soilbio.2024.109517
- Developing systems theory in soil agroecology: incorporating heterogeneity and dynamic instability N. Medina & J. Vandermeer 10.3389/fenvs.2023.1171194
- Identifying Data Needed to Reduce Parameter Uncertainty in a Coupled Microbial Soil C and N Decomposition Model M. Saifuddin et al. 10.1029/2021JG006593
- Simulating adaptive grazing management on soil organic carbon in the Southeast U.S.A. using MEMS 2 R. Santos et al. 10.1016/j.jenvman.2024.121657
- Challenges of Including Wet Grasslands with Variable Groundwater Tables in Large-Area Crop Production Simulations V. Khaledi et al. 10.3390/agriculture14050679
- SAMM version 1.0: a numerical model for microbial- mediated soil aggregate formation M. Laub et al. 10.5194/gmd-17-931-2024
- Content of soil organic carbon and labile fractions depend on local combinations of mineral-phase characteristics M. Ortner et al. 10.5194/soil-8-113-2022
- How does uncertainty of soil organic carbon stock affect the calculation of carbon budgets and soil carbon credits for croplands in the U.S. Midwest? W. Zhou et al. 10.1016/j.geoderma.2022.116254
- Soil microarthropod effects on plant growth and development A. Jernigan et al. 10.1007/s11104-022-05766-x
- Carbon Storage in Cropland Soils: Insights from Iowa, United States J. Jordahl et al. 10.3390/land12081630
- Formation of necromass-derived soil organic carbon determined by microbial death pathways T. Camenzind et al. 10.1038/s41561-022-01100-3
- Microbial-explicit processes and refined perennial plant traits improve modeled ecosystem carbon dynamics D. Berardi et al. 10.1016/j.geoderma.2024.116851
- Improving pedotransfer functions for predicting soil mineral associated organic carbon by ensemble machine learning Y. Xiao et al. 10.1016/j.geoderma.2022.116208
- The limited effect of deforestation on stabilized subsoil organic carbon in a subtropical catchment C. Müller et al. 10.5194/soil-10-349-2024
- Improving Soil Carbon Estimates by Linking Conceptual Pools Against Measurable Carbon Fractions in the DAYCENT Model Version 4.5 S. Dangal et al. 10.1029/2021MS002622
- A scalable framework for quantifying field-level agricultural carbon outcomes K. Guan et al. 10.1016/j.earscirev.2023.104462
- Carbon dynamics as a function of soil moisture following repeated wet-dry cycles in irrigated soils C. Avila et al. 10.1016/j.geoderma.2023.116681
- Agricultural limitations to soil carbon sequestration: Plant growth, microbial activity, and carbon stabilization T. Mattila & N. Vihanto 10.1016/j.agee.2024.108986
- Vegetation’s influence on fire behavior goes beyond just being fuel E. Loudermilk et al. 10.1186/s42408-022-00132-9
- Aligning theoretical and empirical representations of soil carbon-to-nitrogen stoichiometry with process-based terrestrial biogeochemistry models K. Rocci et al. 10.1016/j.soilbio.2023.109272
- Evaluating MONICA's capability to simulate water, carbon and nitrogen fluxes in a wet grassland at contrasting water tables V. Khaledi et al. 10.1016/j.scitotenv.2024.174995
- Dissolved carbon flow to particulate organic carbon enhances soil carbon sequestration Q. Si et al. 10.5194/soil-10-441-2024
- Contrasting properties of soil organic matter fractions isolated by different physical separation methodologies S. Leuthold et al. 10.1016/j.geoderma.2024.116870
- Effects of the combined application of organic and chemical nitrogen fertilizer on soil aggregate carbon and nitrogen: A 30-year study J. BAI et al. 10.1016/j.jia.2023.09.012
- Contributions of anoxic microsites to soil carbon protection across soil textures E. Lacroix et al. 10.1016/j.geoderma.2022.116050
- Microbial nitrogen immobilization as a tool to manage weeds in agroecosystems M. Gannett et al. 10.1016/j.agee.2024.108904
- Where and Why Do Particulate Organic Matter (Pom) and Mineral-Associated Organic Matter (Maom) Differ Among Diverse Soils? W. Yu et al. 10.2139/ssrn.4062834
- The role of plant input physical-chemical properties, and microbial and soil chemical diversity on the formation of particulate and mineral-associated organic matter M. Cotrufo et al. 10.1016/j.soilbio.2022.108648
- Surface soil sampling underestimates soil carbon and nitrogen storage of long-term cover cropping Y. Peng & L. Van Eerd 10.1016/j.geodrs.2024.e00885
- Life and death in the soil microbiome: how ecological processes influence biogeochemistry N. Sokol et al. 10.1038/s41579-022-00695-z
- In‐N‐Out: A hierarchical framework to understand and predict soil carbon storage and nitrogen recycling M. Francesca Cotrufo et al. 10.1111/gcb.15782
- Mechanisms of soil organic carbon and nitrogen stabilization in mineral-associated organic matter – insights from modeling in phase space S. Manzoni & M. Cotrufo 10.5194/bg-21-4077-2024
- Emergent temperature sensitivity of soil organic carbon driven by mineral associations K. Georgiou et al. 10.1038/s41561-024-01384-7
- Short-Term Mineralization of Belowground Biomass of Perennial Biomass Crops after Reversion to Arable Land A. Ferrarini et al. 10.3390/agronomy12020485
- Ecological stoichiometry as a foundation for omics-enabled biogeochemical models of soil organic matter decomposition E. Graham & K. Hofmockel 10.1007/s10533-021-00851-2
- Simulating measurable ecosystem carbon and nitrogen dynamics with the mechanistically defined MEMS 2.0 model Y. Zhang et al. 10.5194/bg-18-3147-2021
40 citations as recorded by crossref.
- Unlocking complex soil systems as carbon sinks: multi-pool management as the key G. Angst et al. 10.1038/s41467-023-38700-5
- A soil matrix capacity index to predict mineral-associated but not particulate organic carbon across a range of climate and soil pH A. King et al. 10.1007/s10533-023-01066-3
- Importance of on-farm research for validating process-based models of climate-smart agriculture E. Ellis & K. Paustian 10.1186/s13021-024-00260-6
- Radiocarbon analysis reveals underestimation of soil organic carbon persistence in new-generation soil models A. Brunmayr et al. 10.5194/gmd-17-5961-2024
- Climate change challenges, plant science solutions N. Eckardt et al. 10.1093/plcell/koac303
- Quantity, quality and physical protection of soil carbon associated with sugarcane straw removal in southern Brazil M. Pimentel et al. 10.1016/j.still.2023.105976
- Comparing plant litter molecular diversity assessed from proximate analysis and 13C NMR spectroscopy A. Chakrawal et al. 10.1016/j.soilbio.2024.109517
- Developing systems theory in soil agroecology: incorporating heterogeneity and dynamic instability N. Medina & J. Vandermeer 10.3389/fenvs.2023.1171194
- Identifying Data Needed to Reduce Parameter Uncertainty in a Coupled Microbial Soil C and N Decomposition Model M. Saifuddin et al. 10.1029/2021JG006593
- Simulating adaptive grazing management on soil organic carbon in the Southeast U.S.A. using MEMS 2 R. Santos et al. 10.1016/j.jenvman.2024.121657
- Challenges of Including Wet Grasslands with Variable Groundwater Tables in Large-Area Crop Production Simulations V. Khaledi et al. 10.3390/agriculture14050679
- SAMM version 1.0: a numerical model for microbial- mediated soil aggregate formation M. Laub et al. 10.5194/gmd-17-931-2024
- Content of soil organic carbon and labile fractions depend on local combinations of mineral-phase characteristics M. Ortner et al. 10.5194/soil-8-113-2022
- How does uncertainty of soil organic carbon stock affect the calculation of carbon budgets and soil carbon credits for croplands in the U.S. Midwest? W. Zhou et al. 10.1016/j.geoderma.2022.116254
- Soil microarthropod effects on plant growth and development A. Jernigan et al. 10.1007/s11104-022-05766-x
- Carbon Storage in Cropland Soils: Insights from Iowa, United States J. Jordahl et al. 10.3390/land12081630
- Formation of necromass-derived soil organic carbon determined by microbial death pathways T. Camenzind et al. 10.1038/s41561-022-01100-3
- Microbial-explicit processes and refined perennial plant traits improve modeled ecosystem carbon dynamics D. Berardi et al. 10.1016/j.geoderma.2024.116851
- Improving pedotransfer functions for predicting soil mineral associated organic carbon by ensemble machine learning Y. Xiao et al. 10.1016/j.geoderma.2022.116208
- The limited effect of deforestation on stabilized subsoil organic carbon in a subtropical catchment C. Müller et al. 10.5194/soil-10-349-2024
- Improving Soil Carbon Estimates by Linking Conceptual Pools Against Measurable Carbon Fractions in the DAYCENT Model Version 4.5 S. Dangal et al. 10.1029/2021MS002622
- A scalable framework for quantifying field-level agricultural carbon outcomes K. Guan et al. 10.1016/j.earscirev.2023.104462
- Carbon dynamics as a function of soil moisture following repeated wet-dry cycles in irrigated soils C. Avila et al. 10.1016/j.geoderma.2023.116681
- Agricultural limitations to soil carbon sequestration: Plant growth, microbial activity, and carbon stabilization T. Mattila & N. Vihanto 10.1016/j.agee.2024.108986
- Vegetation’s influence on fire behavior goes beyond just being fuel E. Loudermilk et al. 10.1186/s42408-022-00132-9
- Aligning theoretical and empirical representations of soil carbon-to-nitrogen stoichiometry with process-based terrestrial biogeochemistry models K. Rocci et al. 10.1016/j.soilbio.2023.109272
- Evaluating MONICA's capability to simulate water, carbon and nitrogen fluxes in a wet grassland at contrasting water tables V. Khaledi et al. 10.1016/j.scitotenv.2024.174995
- Dissolved carbon flow to particulate organic carbon enhances soil carbon sequestration Q. Si et al. 10.5194/soil-10-441-2024
- Contrasting properties of soil organic matter fractions isolated by different physical separation methodologies S. Leuthold et al. 10.1016/j.geoderma.2024.116870
- Effects of the combined application of organic and chemical nitrogen fertilizer on soil aggregate carbon and nitrogen: A 30-year study J. BAI et al. 10.1016/j.jia.2023.09.012
- Contributions of anoxic microsites to soil carbon protection across soil textures E. Lacroix et al. 10.1016/j.geoderma.2022.116050
- Microbial nitrogen immobilization as a tool to manage weeds in agroecosystems M. Gannett et al. 10.1016/j.agee.2024.108904
- Where and Why Do Particulate Organic Matter (Pom) and Mineral-Associated Organic Matter (Maom) Differ Among Diverse Soils? W. Yu et al. 10.2139/ssrn.4062834
- The role of plant input physical-chemical properties, and microbial and soil chemical diversity on the formation of particulate and mineral-associated organic matter M. Cotrufo et al. 10.1016/j.soilbio.2022.108648
- Surface soil sampling underestimates soil carbon and nitrogen storage of long-term cover cropping Y. Peng & L. Van Eerd 10.1016/j.geodrs.2024.e00885
- Life and death in the soil microbiome: how ecological processes influence biogeochemistry N. Sokol et al. 10.1038/s41579-022-00695-z
- In‐N‐Out: A hierarchical framework to understand and predict soil carbon storage and nitrogen recycling M. Francesca Cotrufo et al. 10.1111/gcb.15782
- Mechanisms of soil organic carbon and nitrogen stabilization in mineral-associated organic matter – insights from modeling in phase space S. Manzoni & M. Cotrufo 10.5194/bg-21-4077-2024
- Emergent temperature sensitivity of soil organic carbon driven by mineral associations K. Georgiou et al. 10.1038/s41561-024-01384-7
- Short-Term Mineralization of Belowground Biomass of Perennial Biomass Crops after Reversion to Arable Land A. Ferrarini et al. 10.3390/agronomy12020485
2 citations as recorded by crossref.
- Ecological stoichiometry as a foundation for omics-enabled biogeochemical models of soil organic matter decomposition E. Graham & K. Hofmockel 10.1007/s10533-021-00851-2
- Simulating measurable ecosystem carbon and nitrogen dynamics with the mechanistically defined MEMS 2.0 model Y. Zhang et al. 10.5194/bg-18-3147-2021
Latest update: 13 Nov 2024
Short summary
Soil organic matter (SOM) is essential for the health of soils, and the accumulation of SOM helps removal of CO2 from the atmosphere. Here we present the result of the continued development of a mathematical model that simulates SOM and its measurable fractions. In this study, we simulated several grassland sites in the US, and the model generally captured the carbon and nitrogen amounts in SOM and their distribution between the measurable fractions throughout the entire soil profile.
Soil organic matter (SOM) is essential for the health of soils, and the accumulation of SOM...
Altmetrics
Final-revised paper
Preprint