Articles | Volume 18, issue 12
https://doi.org/10.5194/bg-18-3689-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-18-3689-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Reviews and syntheses: Heterotrophic fixation of inorganic carbon – significant but invisible flux in environmental carbon cycling
Alexander Braun
Institute of Groundwater Ecology, Helmholtz Zentrum München,
Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany
Marina Spona-Friedl
Institute of Groundwater Ecology, Helmholtz Zentrum München,
Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany
Maria Avramov
Institute of Groundwater Ecology, Helmholtz Zentrum München,
Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany
Martin Elsner
Institute of Groundwater Ecology, Helmholtz Zentrum München,
Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany
Department of Analytical Chemistry
and Water Chemistry, Technical University of Munich, Munich, Germany
Federico Baltar
Department of Functional and Evolutionary
Ecology, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria
Thomas Reinthaler
Department of Functional and Evolutionary
Ecology, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria
Gerhard J. Herndl
Department of Functional and Evolutionary
Ecology, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria
Department of Marine Microbiology and Biogeochemistry, Royal
Netherlands Institute for Sea Research, Utrecht University, P.O. Box 59, 1790
AB Den Burg, the Netherlands
Christian Griebler
CORRESPONDING AUTHOR
Institute of Groundwater Ecology, Helmholtz Zentrum München,
Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany
Department of Functional and Evolutionary
Ecology, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria
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Cited
65 citations as recorded by crossref.
- Substantial dark carbon fixation contributes to carbon sink in human-impacted estuarine and coastal waters R. Cui et al.
- Microbial Activities and Selection from Surface Ocean to Subseafloor on the Namibian Continental Shelf A. Vuillemin et al.
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- Carbon dynamics in termite mounds: The effect of land use on microbial oxalotrophy T. Nel et al.
- Constraining activity and growth substrate of fungal decomposers via assimilation patterns of inorganic carbon and water into lipid biomarkers S. Jabinski et al.
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- Temperature sensitivity of dark CO2 fixation in temperate forest soils R. Akinyede et al.
- Microbial defluorination of TFA, PFOA, and HFPO-DA by a native microbial consortium under anoxic conditions Z. Tang et al.
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- Radiocarbon constraints on the sources and fluxes of sinking particulate organic carbon to the deep Sargasso Sea C. Schnepper et al.
- Revealing holistic metabolic responses associated with lipid and docosahexaenoic acid (DHA) production in Aurantiochytrium sp. SW1 P. Prabhakaran et al.
- Hydrothermal vents supporting persistent plumes and microbial chemoautotrophy at Gakkel Ridge (Arctic Ocean) G. Wegener et al.
- Dark Carbon Fixation Measurements in the East Sea (Sea of Japan) H. Jang et al.
- Soil savvy: how stable isotopes are shaping forest ecosystem management S. Lawson et al.
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- Unravelling the main mechanism responsible for nocturnal CO2 uptake by dryland soils M. Kim et al.
- Estimating taxonomic and functional structure along a tropical estuary: linking metabolic traits and aspects of ecosystem functioning H. Levipan et al.
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- The effects of metabolism and temperature on carbon isotope composition of lipids in marine bacterium Shewanella piezotolerans WP3 X. Chen et al.
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- Manufactured zeolite application to soil can rapidly increase pH and enhance inorganic carbon sequestration C. Pratt et al.
- Prokaryotic Life in the Deep Ocean's Water Column G. Herndl et al.
65 citations as recorded by crossref.
- Substantial dark carbon fixation contributes to carbon sink in human-impacted estuarine and coastal waters R. Cui et al.
- Microbial Activities and Selection from Surface Ocean to Subseafloor on the Namibian Continental Shelf A. Vuillemin et al.
- Genomic profiling and characteristics of a C1 degrading heterotrophic fresh-water bacterium Paracoccus sp. strain DMF S. Maurya et al.
- Carbon dynamics in termite mounds: The effect of land use on microbial oxalotrophy T. Nel et al.
- Constraining activity and growth substrate of fungal decomposers via assimilation patterns of inorganic carbon and water into lipid biomarkers S. Jabinski et al.
- Priority effects inhibit the repeated evolution of phototrophy A. Burnetti et al.
- Temperature sensitivity of dark CO2 fixation in temperate forest soils R. Akinyede et al.
- Microbial defluorination of TFA, PFOA, and HFPO-DA by a native microbial consortium under anoxic conditions Z. Tang et al.
- Inactive hydrothermal vent microbial communities are important contributors to deep ocean primary productivity A. Achberger et al.
- Radiocarbon constraints on the sources and fluxes of sinking particulate organic carbon to the deep Sargasso Sea C. Schnepper et al.
- Revealing holistic metabolic responses associated with lipid and docosahexaenoic acid (DHA) production in Aurantiochytrium sp. SW1 P. Prabhakaran et al.
- Hydrothermal vents supporting persistent plumes and microbial chemoautotrophy at Gakkel Ridge (Arctic Ocean) G. Wegener et al.
- Dark Carbon Fixation Measurements in the East Sea (Sea of Japan) H. Jang et al.
- Soil savvy: how stable isotopes are shaping forest ecosystem management S. Lawson et al.
- Low CO2 Footprint Remediation of Oil-Contaminated Soil in a Sediment Microbial Fuel Cell G. Klyushin et al.
- Unravelling the main mechanism responsible for nocturnal CO2 uptake by dryland soils M. Kim et al.
- Estimating taxonomic and functional structure along a tropical estuary: linking metabolic traits and aspects of ecosystem functioning H. Levipan et al.
- Quantifying the effects of hydrogen on carbon assimilation in a seafloor microbial community associated with ultramafic rocks Ö. Coskun et al.
- Single-cell analysis in hypersaline brines predicts a water-activity limit of microbial anabolic activity E. Paris et al.
- Carbon monoxide-oxidising Pseudomonadota on volcanic deposits R. Dawson et al.
- The effects of metabolism and temperature on carbon isotope composition of lipids in marine bacterium Shewanella piezotolerans WP3 X. Chen et al.
- Minor contribution of ammonia oxidizers to inorganic carbon fixation in the ocean B. Bayer et al.
- Biological Carbon Capture Using Spinach Carbonic Anhydrase Immobilized on Magnetite Nanoparticles H. Arumugam et al.
- High contribution of dark dissolved inorganic carbon uptake to microbial carbon cycling in a shallow Mediterranean basin V. Manna et al.
- Pilot-scale reverse osmosis treatment of gold cyanidation effluent for the removal of cyanide, heavy metal(loid)s, and ionic species C. Goyburo-Chávez et al.
- Using Stable Isotope Probing and Raman Microspectroscopy To Measure Growth Rates of Heterotrophic Bacteria F. Weber et al.
- Fungi present distinguishable isotopic signals in their lipids when grown on glycolytic versus tricarboxylic acid cycle intermediates S. Jabinski et al.
- Bacterioplankton dark CO2 fixation in oligotrophic waters A. Alothman et al.
- Beyond photosynthesis: Harnessing heterotrophic CO2 fixation in Euglena gracilis for next-generation carbon capture and circular biomanufacturing S. Inwongwan
- Draft genome sequences of six high pH adapted Marinobacter shengliensis strains isolated from Mariana forearc serpentinite mud volcanoes S. Elkassas et al.
- Ecological distribution and metabolic potential of Marine Group II archaea in the Eastern Indian Ocean: Evidence for heterotrophic carbon fixation J. Dai et al.
- Bidirectional extracellular electron transfer modulates heterotrophic CO2 fixation in Rhodopseudomonas palustris X. Liu et al.
- Contribution of chemoautotrophy and heterotrophy to the microbial carbon cycle in the Southwestern Atlantic Ocean J. Passos et al.
- Distinct contributions of suspended and sinking prokaryotes to mesopelagic carbon budget P. Le Coq et al.
- Microbial Processing and Mineral Stabilization of Organic Matter in Iron Ore Tailings: A Four-Year Microcosm Study via Isotopic Labeling and Submicron-Scale Analysis S. Wu et al.
- Physiological versatility of ANME-1 and Bathyarchaeotoa-8 archaea evidenced by inverse stable isotope labeling X. Yin et al.
- Phreatobacter aquiterrae sp. nov., isolated from an Icelandic subsurface geothermal aquifer M. Cozannet et al.
- Core microbial taxonomies that maintain high organic carbon content in upland soil F. Li et al.
- Autotrophic and Mixotrophic Microbial Carbon Assimilation During Organic Residue Decomposition in Mollisols: Mechanisms and Controls M. Sheng et al.
- Persistent petroleum pollution shifts soil microbial responses in Bunger Hills, East Antarctica K. Tan et al.
- Rates and physicochemical drivers of microbial anabolic activity in deep‐sea sediments and implications for deep time N. Meyer et al.
- The Microbial Ecology of Estuarine Ecosystems B. Crump & J. Bowen
- A curated resource of chemolithoautotrophic genomes and marker genes for CO₂ fixation pathway prediction S. Kawashima et al.
- Elevated heterotrophic activity in Guaymas Basin hydrothermal plumes influences deep-sea carbon cycling A. Montgomery et al.
- Influences of water availability on soil carbon emissions based on flux balance analysis Y. Liao et al.
- Role of Carbon Dioxide in the Regulation of Adaptive Proliferation in Bacteria O. Petrova et al.
- Bacteriohopanepolyols across the Black Sea redoxcline trace diverse bacterial metabolisms S. Kusch et al.
- Fixation of CO2 by soil fungi: contribution to organic carbon pool and destination of fixed carbon products F. Li et al.
- The role of carbon dioxide in the regulation of bacterial adaptive proliferation O. Petrova et al.
- Hydrogen and alcohols production by Serratia sp. from an inorganic carbon source I. Salmerón et al.
- Drought re-routes soil microbial carbon metabolism towards emission of volatile metabolites in an artificial tropical rainforest L. Hernandez et al.
- Array of metabolic pathways in a kleptoplastidic foraminiferan protist supports chemoautotrophy in dark, euxinic seafloor sediments F. Gomaa et al.
- Drivers of soil carbon and nitrogen cycling during plantation succession: linking aboveground plant communities with belowground microbial networks X. Zuo et al.
- Dark CO2 fixation in temperate beech and pine forest soils R. Akinyede et al.
- The contributions of dark microbial CO2 fixation to soil organic carbon along a tropical secondary forest chronosequence on Hainan Island, China Y. Sun et al.
- Widespread deep-sea microorganisms in subseafloor geochemical cycling R. Hageman et al.
- Efficient production of exclusive acetate from inorganic carbon in microbial electrosynthesis systems incorporating photo-assisted MnFe2O4/g-C3N4 anaerobic halotolerant cathodes Z. Gai et al.
- Single-cell analysis reveals an active and heterotrophic microbiome in the Guaymas Basin deep subsurface with significant inorganic carbon fixation by heterotrophs N. Meyer et al.
- Quantitative metatranscriptomics and biogeochemical rate measurements reveal microbial pathways driving carbon and nitrogen cycles in an Arctic coastal lagoon N. Griffin et al.
- Large genomic, functional, and phenotypical diversity of Janthinobacterium associated with Atlantic salmon fry E. Lorentsen et al.
- Dynamic utilization of low-molecular-weight organic substrates across a microbial growth rate gradient K. Cyle et al.
- Relative contribution of dark carbon fixation to total carbon uptake along a latitudinal transect in the Seychelles-Chagos thermocline ridge, western Indian ocean W. Cho et al.
- Microbial methane production from calcium carbonate at moderately alkaline pH N. Fiore et al.
- Manufactured zeolite application to soil can rapidly increase pH and enhance inorganic carbon sequestration C. Pratt et al.
- Prokaryotic Life in the Deep Ocean's Water Column G. Herndl et al.
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Short summary
It is known that CO2 fixation by photoautotrophic organisms is the major sink from the atmosphere. While biologists are aware that CO2 fixation also occurs in heterotrophic organisms, this route of inorganic carbon, and its quantitative role, is hardly recognized in biogeochemistry. We demonstrate that a considerable amount of CO2 is fixed annually through anaplerotic reactions in heterotrophic organisms, and a significant quantity of inorganic carbon is temporally sequestered in biomass.
It is known that CO2 fixation by photoautotrophic organisms is the major sink from the...
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