Articles | Volume 22, issue 12
https://doi.org/10.5194/bg-22-2959-2025
© Author(s) 2025. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-22-2959-2025
© Author(s) 2025. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
25 Jun 2025
Research article |
| 25 Jun 2025
| 25 Jun 2025
Distinct changes in carbon, nitrogen, and phosphorus cycling in the litter layer across two contrasting forest–tundra ecotones
Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
Josephine Imboden
Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
Pavel A. Moiseev
Institute of Plant and Animal Ecology, Ural Branch, Russian Academy of Sciences, 620144, Ekaterinburg, Russia
Decai Gao
Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
Qianyanzhou Ecological Research Station, The Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China
Emmanuel Frossard
Dept. of Environmental Systems Science, ETH Zurich, Zurich, Switzerland
Patrick Schleppi
Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
Daniel Christen
Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
Konstantin Gavazov
Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
Jasmin Fetzer
Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
Dept. of Environmental Systems Science, ETH Zurich, Zurich, Switzerland
Related authors
Luisa I. Minich, Dylan Geissbühler, Stefan Tobler, Annegret Udke, Alexander S. Brunmayr, Margaux Moreno Duborgel, Ciriaco McMackin, Lukas Wacker, Philip Gautschi, Negar Haghipour, Markus Egli, Ansgar Kahmen, Jens Leifeld, Timothy I. Eglinton, and Frank Hagedorn
EGUsphere, https://doi.org/10.5194/egusphere-2025-2267, https://doi.org/10.5194/egusphere-2025-2267, 2025
This preprint is open for discussion and under review for Biogeosciences (BG).
Short summary
Short summary
We developed a framework using rates and 14C-derived ages of soil-respired CO2 and its sources (autotrophic, heterotrophic) to identify carbon cycling pathways in different land-use types. Rates, ages and sources of respired CO2 varied across forests, grasslands, croplands, and managed peatlands. Our results suggest that the relationship between rates and ages of respired CO2 serves as a robust indicator of carbon retention or destabilization from natural to disturbed systems.
Chun Chung Yeung, Harald Bugmann, Frank Hagedorn, Margaux Moreno Duborgel, and Olalla Díaz-Yáñez
EGUsphere, https://doi.org/10.5194/egusphere-2025-1022, https://doi.org/10.5194/egusphere-2025-1022, 2025
Short summary
Short summary
To address the uncertain interactions between soil nitrogen (N) and carbon (C), we set up a model “experiment” in silico to test several hypothesized responses of decomposers to N. We found that decomposers were stimulated by N when decomposing high C:N detritus, but inhibited when decomposing low C:N, processed organic C. The consequence is that under exogenous N addition (e.g., contemporary N deposition), forests may accumulate light fraction C predominantly, at the expense of coarse detritus.
Claudia Guidi, Sia Gosheva-Oney, Markus Didion, Roman Flury, Lorenz Walthert, Stephan Zimmermann, Brian J. Oney, Pascal A. Niklaus, Esther Thürig, Toni Viskari, Jari Liski, and Frank Hagedorn
EGUsphere, https://doi.org/10.5194/egusphere-2024-3788, https://doi.org/10.5194/egusphere-2024-3788, 2024
Short summary
Short summary
Predicting soil organic carbon (SOC) stocks in forests is crucial for assessing C balance, yet drivers of SOC stocks remain uncertain at large scales. Across a broad environmental gradient in Switzerland, we compared measured SOC stocks with those modelled by Yasso20, commonly used for GHG budgets. Our results show that soil mineral properties and climate are main controls of SOC stocks, indicating that better accounting of these processes will advance accuracy of SOC stock predictions.
Marco M. Lehmann, Josie Geris, Ilja van Meerveld, Daniele Penna, Youri Rothfuss, Matteo Verdone, Pertti Ala-Aho, Matyas Arvai, Alise Babre, Philippe Balandier, Fabian Bernhard, Lukrecija Butorac, Simon Damien Carrière, Natalie C. Ceperley, Zuosinan Chen, Alicia Correa, Haoyu Diao, David Dubbert, Maren Dubbert, Fabio Ercoli, Marius G. Floriancic, Teresa E. Gimeno, Damien Gounelle, Frank Hagedorn, Christophe Hissler, Frédéric Huneau, Alberto Iraheta, Tamara Jakovljević, Nerantzis Kazakis, Zoltan Kern, Karl Knaebel, Johannes Kobler, Jiří Kocum, Charlotte Koeber, Gerbrand Koren, Angelika Kübert, Dawid Kupka, Samuel Le Gall, Aleksi Lehtonen, Thomas Leydier, Philippe Malagoli, Francesca Sofia Manca di Villahermosa, Chiara Marchina, Núria Martínez-Carreras, Nicolas Martin-StPaul, Hannu Marttila, Aline Meyer Oliveira, Gaël Monvoisin, Natalie Orlowski, Kadi Palmik-Das, Aurel Persoiu, Andrei Popa, Egor Prikaziuk, Cécile Quantin, Katja T. Rinne-Garmston, Clara Rohde, Martin Sanda, Matthias Saurer, Daniel Schulz, Michael Paul Stockinger, Christine Stumpp, Jean-Stéphane Venisse, Lukas Vlcek, Stylianos Voudouris, Björn Weeser, Mark E. Wilkinson, Giulia Zuecco, and Katrin Meusburger
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-409, https://doi.org/10.5194/essd-2024-409, 2024
Preprint under review for ESSD
Short summary
Short summary
This study describes a unique large-scale isotope dataset to study water dynamics in European forests. Researchers collected data from 40 beech and spruce forest sites in spring and summer 2023, using a standardized method to ensure consistency. The results show that water sources for trees change between seasons and vary by tree species. This large dataset offers valuable information for understanding plant water use, improving ecohydrological models, and mapping water cycles across Europe.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev., 17, 5961–5985, https://doi.org/10.5194/gmd-17-5961-2024, https://doi.org/10.5194/gmd-17-5961-2024, 2024
Short summary
Short summary
A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems to the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Tatjana C. Speckert, Jeannine Suremann, Konstantin Gavazov, Maria J. Santos, Frank Hagedorn, and Guido L. B. Wiesenberg
SOIL, 9, 609–621, https://doi.org/10.5194/soil-9-609-2023, https://doi.org/10.5194/soil-9-609-2023, 2023
Short summary
Short summary
Soil organic carbon (SOC) is key player in the global carbon cycle. Afforestation on pastures potentially alters organic matter input and SOC sequestration. We investigated the effects of a Picea abies L. afforestation sequence (0 to 130 years) on a former subalpine pasture on SOC stocks and dynamics. We found no difference in the SOC stock after 130 years of afforestation and thus no additional SOC sequestration. SOC composition was altered due to a modified SOC input following afforestation.
Jasmin Fetzer, Emmanuel Frossard, Klaus Kaiser, and Frank Hagedorn
Biogeosciences, 19, 1527–1546, https://doi.org/10.5194/bg-19-1527-2022, https://doi.org/10.5194/bg-19-1527-2022, 2022
Short summary
Short summary
As leaching is a major pathway of nitrogen and phosphorus loss in forest soils, we investigated several potential drivers in two contrasting beech forests. The composition of leachates, obtained by zero-tension lysimeters, varied by season, and climatic extremes influenced the magnitude of leaching. Effects of nitrogen and phosphorus fertilization varied with soil nutrient status and sorption properties, and leaching from the low-nutrient soil was more sensitive to environmental factors.
Severin-Luca Bellè, Asmeret Asefaw Berhe, Frank Hagedorn, Cristina Santin, Marcus Schiedung, Ilja van Meerveld, and Samuel Abiven
Biogeosciences, 18, 1105–1126, https://doi.org/10.5194/bg-18-1105-2021, https://doi.org/10.5194/bg-18-1105-2021, 2021
Short summary
Short summary
Controls of pyrogenic carbon (PyC) redistribution under rainfall are largely unknown. However, PyC mobility can be substantial after initial rain in post-fire landscapes. We conducted a controlled simulation experiment on plots where PyC was applied on the soil surface. We identified redistribution of PyC by runoff and splash and vertical movement in the soil depending on soil texture and PyC characteristics (material and size). PyC also induced changes in exports of native soil organic carbon.
Hannah Gies, Frank Hagedorn, Maarten Lupker, Daniel Montluçon, Negar Haghipour, Tessa Sophia van der Voort, and Timothy Ian Eglinton
Biogeosciences, 18, 189–205, https://doi.org/10.5194/bg-18-189-2021, https://doi.org/10.5194/bg-18-189-2021, 2021
Short summary
Short summary
Understanding controls on the persistence of organic matter in soils is essential to constrain its role in the carbon cycle. Emerging concepts suggest that the soil carbon pool is predominantly comprised of stabilized microbial residues. To test this hypothesis we isolated microbial membrane lipids from two Swiss soil profiles and measured their radiocarbon age. We find that the ages of these compounds are in the range of millenia and thus provide evidence for stabilized microbial mass in soils.
Tessa Sophia van der Voort, Utsav Mannu, Frank Hagedorn, Cameron McIntyre, Lorenz Walthert, Patrick Schleppi, Negar Haghipour, and Timothy Ian Eglinton
Biogeosciences, 16, 3233–3246, https://doi.org/10.5194/bg-16-3233-2019, https://doi.org/10.5194/bg-16-3233-2019, 2019
Short summary
Short summary
The carbon stored in soils is the largest reservoir of organic carbon on land. In the context of greenhouse gas emissions and a changing climate, it is very important to understand how stable the carbon in the soil is and why. The deeper parts of the soil have often been overlooked even though they store a lot of carbon. In this paper, we discovered that although deep soil carbon is expected to be old and stable, there can be a significant young component that cycles much faster.
Emily F. Solly, Valentino Weber, Stephan Zimmermann, Lorenz Walthert, Frank Hagedorn, and Michael W. I. Schmidt
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-33, https://doi.org/10.5194/bg-2019-33, 2019
Revised manuscript not accepted
Short summary
Short summary
Soils are the largest reservoir of carbon on land. In the context of global change, it is important to assess which environmental variables are needed to describe changes in the content of soil organic carbon. We assessed how climatic, vegetation and edaphic variables explain the variance of soil organic carbon content in Swiss forests. Our results provide a first indication that considering the effective cation exchange capacity of soils in future biogeochemical simulations could be beneficial.
Jobin Joseph, Christoph Külls, Matthias Arend, Marcus Schaub, Frank Hagedorn, Arthur Gessler, and Markus Weiler
SOIL, 5, 49–62, https://doi.org/10.5194/soil-5-49-2019, https://doi.org/10.5194/soil-5-49-2019, 2019
Short summary
Short summary
By coupling an OA-ICOS with hydrophobic but gas-permeable membranes placed at different depths in acidic and calcareous soils, we investigated the contribution of abiotic and biotic components to total soil CO2 release. In calcareous Gleysol, CO2 originating from carbonate dissolution contributed to total soil CO2 concentration at detectable degrees, probably due to CO2 evasion from groundwater. Inward diffusion of atmospheric CO2 was found to be pronounced in the topsoil layers at both sites.
Tessa Sophia van der Voort, Frank Hagedorn, Cameron McIntyre, Claudia Zell, Lorenz Walthert, Patrick Schleppi, Xiaojuan Feng, and Timothy Ian Eglinton
Biogeosciences, 13, 3427–3439, https://doi.org/10.5194/bg-13-3427-2016, https://doi.org/10.5194/bg-13-3427-2016, 2016
Short summary
Short summary
This study explores heterogeneity in 14C content of soil organic matter (SOM) at different spatial scales and across climatic and geologic gradients, which is essential for a better understanding of SOM stability. Results reveal that despite dissimilar environmental conditions, 14C contents in topsoils is relatively uniform and 14C trends with depth are similar. Plot-scale variability is significant. Statistical analysis found a significant correlation of 14C contents (0–5 cm) and temperature.
J. Schwaab, M. Bavay, E. Davin, F. Hagedorn, F. Hüsler, M. Lehning, M. Schneebeli, E. Thürig, and P. Bebi
Biogeosciences, 12, 467–487, https://doi.org/10.5194/bg-12-467-2015, https://doi.org/10.5194/bg-12-467-2015, 2015
Luisa I. Minich, Dylan Geissbühler, Stefan Tobler, Annegret Udke, Alexander S. Brunmayr, Margaux Moreno Duborgel, Ciriaco McMackin, Lukas Wacker, Philip Gautschi, Negar Haghipour, Markus Egli, Ansgar Kahmen, Jens Leifeld, Timothy I. Eglinton, and Frank Hagedorn
EGUsphere, https://doi.org/10.5194/egusphere-2025-2267, https://doi.org/10.5194/egusphere-2025-2267, 2025
This preprint is open for discussion and under review for Biogeosciences (BG).
Short summary
Short summary
We developed a framework using rates and 14C-derived ages of soil-respired CO2 and its sources (autotrophic, heterotrophic) to identify carbon cycling pathways in different land-use types. Rates, ages and sources of respired CO2 varied across forests, grasslands, croplands, and managed peatlands. Our results suggest that the relationship between rates and ages of respired CO2 serves as a robust indicator of carbon retention or destabilization from natural to disturbed systems.
Chun Chung Yeung, Harald Bugmann, Frank Hagedorn, Margaux Moreno Duborgel, and Olalla Díaz-Yáñez
EGUsphere, https://doi.org/10.5194/egusphere-2025-1022, https://doi.org/10.5194/egusphere-2025-1022, 2025
Short summary
Short summary
To address the uncertain interactions between soil nitrogen (N) and carbon (C), we set up a model “experiment” in silico to test several hypothesized responses of decomposers to N. We found that decomposers were stimulated by N when decomposing high C:N detritus, but inhibited when decomposing low C:N, processed organic C. The consequence is that under exogenous N addition (e.g., contemporary N deposition), forests may accumulate light fraction C predominantly, at the expense of coarse detritus.
Claudia Guidi, Sia Gosheva-Oney, Markus Didion, Roman Flury, Lorenz Walthert, Stephan Zimmermann, Brian J. Oney, Pascal A. Niklaus, Esther Thürig, Toni Viskari, Jari Liski, and Frank Hagedorn
EGUsphere, https://doi.org/10.5194/egusphere-2024-3788, https://doi.org/10.5194/egusphere-2024-3788, 2024
Short summary
Short summary
Predicting soil organic carbon (SOC) stocks in forests is crucial for assessing C balance, yet drivers of SOC stocks remain uncertain at large scales. Across a broad environmental gradient in Switzerland, we compared measured SOC stocks with those modelled by Yasso20, commonly used for GHG budgets. Our results show that soil mineral properties and climate are main controls of SOC stocks, indicating that better accounting of these processes will advance accuracy of SOC stock predictions.
Marco M. Lehmann, Josie Geris, Ilja van Meerveld, Daniele Penna, Youri Rothfuss, Matteo Verdone, Pertti Ala-Aho, Matyas Arvai, Alise Babre, Philippe Balandier, Fabian Bernhard, Lukrecija Butorac, Simon Damien Carrière, Natalie C. Ceperley, Zuosinan Chen, Alicia Correa, Haoyu Diao, David Dubbert, Maren Dubbert, Fabio Ercoli, Marius G. Floriancic, Teresa E. Gimeno, Damien Gounelle, Frank Hagedorn, Christophe Hissler, Frédéric Huneau, Alberto Iraheta, Tamara Jakovljević, Nerantzis Kazakis, Zoltan Kern, Karl Knaebel, Johannes Kobler, Jiří Kocum, Charlotte Koeber, Gerbrand Koren, Angelika Kübert, Dawid Kupka, Samuel Le Gall, Aleksi Lehtonen, Thomas Leydier, Philippe Malagoli, Francesca Sofia Manca di Villahermosa, Chiara Marchina, Núria Martínez-Carreras, Nicolas Martin-StPaul, Hannu Marttila, Aline Meyer Oliveira, Gaël Monvoisin, Natalie Orlowski, Kadi Palmik-Das, Aurel Persoiu, Andrei Popa, Egor Prikaziuk, Cécile Quantin, Katja T. Rinne-Garmston, Clara Rohde, Martin Sanda, Matthias Saurer, Daniel Schulz, Michael Paul Stockinger, Christine Stumpp, Jean-Stéphane Venisse, Lukas Vlcek, Stylianos Voudouris, Björn Weeser, Mark E. Wilkinson, Giulia Zuecco, and Katrin Meusburger
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-409, https://doi.org/10.5194/essd-2024-409, 2024
Preprint under review for ESSD
Short summary
Short summary
This study describes a unique large-scale isotope dataset to study water dynamics in European forests. Researchers collected data from 40 beech and spruce forest sites in spring and summer 2023, using a standardized method to ensure consistency. The results show that water sources for trees change between seasons and vary by tree species. This large dataset offers valuable information for understanding plant water use, improving ecohydrological models, and mapping water cycles across Europe.
Alexander S. Brunmayr, Frank Hagedorn, Margaux Moreno Duborgel, Luisa I. Minich, and Heather D. Graven
Geosci. Model Dev., 17, 5961–5985, https://doi.org/10.5194/gmd-17-5961-2024, https://doi.org/10.5194/gmd-17-5961-2024, 2024
Short summary
Short summary
A new generation of soil models promises to more accurately predict the carbon cycle in soils under climate change. However, measurements of 14C (the radioactive carbon isotope) in soils reveal that the new soil models face similar problems to the traditional models: they underestimate the residence time of carbon in soils and may therefore overestimate the net uptake of CO2 by the land ecosystem. Proposed solutions include restructuring the models and calibrating model parameters with 14C data.
Tatjana C. Speckert, Jeannine Suremann, Konstantin Gavazov, Maria J. Santos, Frank Hagedorn, and Guido L. B. Wiesenberg
SOIL, 9, 609–621, https://doi.org/10.5194/soil-9-609-2023, https://doi.org/10.5194/soil-9-609-2023, 2023
Short summary
Short summary
Soil organic carbon (SOC) is key player in the global carbon cycle. Afforestation on pastures potentially alters organic matter input and SOC sequestration. We investigated the effects of a Picea abies L. afforestation sequence (0 to 130 years) on a former subalpine pasture on SOC stocks and dynamics. We found no difference in the SOC stock after 130 years of afforestation and thus no additional SOC sequestration. SOC composition was altered due to a modified SOC input following afforestation.
Thomas Baer, Gerhard Furrer, Stephan Zimmermann, and Patrick Schleppi
Biogeosciences, 20, 4577–4589, https://doi.org/10.5194/bg-20-4577-2023, https://doi.org/10.5194/bg-20-4577-2023, 2023
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Nitrogen (N) deposition to forest ecosystems is a matter of concern because it affects their nutrient status and makes their soil acidic. We observed an ongoing acidification in a montane forest in central Switzerland even if the subsoil of this site contains carbonates and is thus well buffered. We experimentally added N to simulate a higher pollution, and this increased the acidification. After 25 years of study, however, we can see the first signs of recovery, also under higher N deposition.
Tegawende Léa Jeanne Ilboudo, Lucien NGuessan Diby, Delwendé Innocent Kiba, Tor Gunnar Vågen, Leigh Ann Winowiecki, Hassan Bismarck Nacro, Johan Six, and Emmanuel Frossard
EGUsphere, https://doi.org/10.5194/egusphere-2022-209, https://doi.org/10.5194/egusphere-2022-209, 2022
Preprint withdrawn
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Our results showed that at landscape level SOC stock variability was mainly explained by clay content. We found significant linear positive relationships between VC and SOC stocks for the land uses annual croplands, perennial croplands, grasslands and bushlands without soil depth restrictions until 110 cm. We concluded that in the forest-savanna transition zone, soil properties and topography determine land use, which in turn affects the stocks of SOC and TN and to some extent the VC stocks.
Jasmin Fetzer, Emmanuel Frossard, Klaus Kaiser, and Frank Hagedorn
Biogeosciences, 19, 1527–1546, https://doi.org/10.5194/bg-19-1527-2022, https://doi.org/10.5194/bg-19-1527-2022, 2022
Short summary
Short summary
As leaching is a major pathway of nitrogen and phosphorus loss in forest soils, we investigated several potential drivers in two contrasting beech forests. The composition of leachates, obtained by zero-tension lysimeters, varied by season, and climatic extremes influenced the magnitude of leaching. Effects of nitrogen and phosphorus fertilization varied with soil nutrient status and sorption properties, and leaching from the low-nutrient soil was more sensitive to environmental factors.
Philipp Baumann, Juhwan Lee, Emmanuel Frossard, Laurie Paule Schönholzer, Lucien Diby, Valérie Kouamé Hgaza, Delwende Innocent Kiba, Andrew Sila, Keith Sheperd, and Johan Six
SOIL, 7, 717–731, https://doi.org/10.5194/soil-7-717-2021, https://doi.org/10.5194/soil-7-717-2021, 2021
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This work delivers openly accessible and validated calibrations for diagnosing 26 soil properties based on mid-infrared spectroscopy. These were developed for four regions in Burkina Faso and Côte d'Ivoire, including 80 fields of smallholder farmers. The models can help to site-specifically and cost-efficiently monitor soil quality and fertility constraints to ameliorate soils and yields of yam or other staple crops in the four regions between the humid forest and the northern Guinean savanna.
Severin-Luca Bellè, Asmeret Asefaw Berhe, Frank Hagedorn, Cristina Santin, Marcus Schiedung, Ilja van Meerveld, and Samuel Abiven
Biogeosciences, 18, 1105–1126, https://doi.org/10.5194/bg-18-1105-2021, https://doi.org/10.5194/bg-18-1105-2021, 2021
Short summary
Short summary
Controls of pyrogenic carbon (PyC) redistribution under rainfall are largely unknown. However, PyC mobility can be substantial after initial rain in post-fire landscapes. We conducted a controlled simulation experiment on plots where PyC was applied on the soil surface. We identified redistribution of PyC by runoff and splash and vertical movement in the soil depending on soil texture and PyC characteristics (material and size). PyC also induced changes in exports of native soil organic carbon.
Hannah Gies, Frank Hagedorn, Maarten Lupker, Daniel Montluçon, Negar Haghipour, Tessa Sophia van der Voort, and Timothy Ian Eglinton
Biogeosciences, 18, 189–205, https://doi.org/10.5194/bg-18-189-2021, https://doi.org/10.5194/bg-18-189-2021, 2021
Short summary
Short summary
Understanding controls on the persistence of organic matter in soils is essential to constrain its role in the carbon cycle. Emerging concepts suggest that the soil carbon pool is predominantly comprised of stabilized microbial residues. To test this hypothesis we isolated microbial membrane lipids from two Swiss soil profiles and measured their radiocarbon age. We find that the ages of these compounds are in the range of millenia and thus provide evidence for stabilized microbial mass in soils.
Jolanda E. Reusser, René Verel, Daniel Zindel, Emmanuel Frossard, and Timothy I. McLaren
Biogeosciences, 17, 5079–5095, https://doi.org/10.5194/bg-17-5079-2020, https://doi.org/10.5194/bg-17-5079-2020, 2020
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Inositol phosphates (IPs) are a major pool of organic P in soil. However, information on their diversity and abundance in soil is limited. We isolated IPs from soil and characterised them using solution nuclear magnetic resonance (NMR) spectroscopy. For the first time, we provide direct spectroscopic evidence for the existence of a multitude of lower-order IPs in soil extracts previously not detected with NMR. Our findings will help provide new insight into the cycling of IPs in ecosystems.
Julian Helfenstein, Chiara Pistocchi, Astrid Oberson, Federica Tamburini, Daniel S. Goll, and Emmanuel Frossard
Biogeosciences, 17, 441–454, https://doi.org/10.5194/bg-17-441-2020, https://doi.org/10.5194/bg-17-441-2020, 2020
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In this article we provide estimates of mean residence times of phosphorus in inorganic soil phosphorus pools. These values improve our understanding of the dynamics of phosphorus cycling and can be used to improve global land surface models.
Tessa Sophia van der Voort, Utsav Mannu, Frank Hagedorn, Cameron McIntyre, Lorenz Walthert, Patrick Schleppi, Negar Haghipour, and Timothy Ian Eglinton
Biogeosciences, 16, 3233–3246, https://doi.org/10.5194/bg-16-3233-2019, https://doi.org/10.5194/bg-16-3233-2019, 2019
Short summary
Short summary
The carbon stored in soils is the largest reservoir of organic carbon on land. In the context of greenhouse gas emissions and a changing climate, it is very important to understand how stable the carbon in the soil is and why. The deeper parts of the soil have often been overlooked even though they store a lot of carbon. In this paper, we discovered that although deep soil carbon is expected to be old and stable, there can be a significant young component that cycles much faster.
Susan J. Cheng, Peter G. Hess, William R. Wieder, R. Quinn Thomas, Knute J. Nadelhoffer, Julius Vira, Danica L. Lombardozzi, Per Gundersen, Ivan J. Fernandez, Patrick Schleppi, Marie-Cécile Gruselle, Filip Moldan, and Christine L. Goodale
Biogeosciences, 16, 2771–2793, https://doi.org/10.5194/bg-16-2771-2019, https://doi.org/10.5194/bg-16-2771-2019, 2019
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Nitrogen deposition and fertilizer can change how much carbon is stored in plants and soils. Understanding how much added nitrogen is recovered in plants or soils is critical to estimating the size of the future land carbon sink. We compared how nitrogen additions are recovered in modeled soil and plant stocks against data from long-term nitrogen addition experiments. We found that the model simulates recovery of added nitrogen into soils through a different process than found in the field.
Emily F. Solly, Valentino Weber, Stephan Zimmermann, Lorenz Walthert, Frank Hagedorn, and Michael W. I. Schmidt
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-33, https://doi.org/10.5194/bg-2019-33, 2019
Revised manuscript not accepted
Short summary
Short summary
Soils are the largest reservoir of carbon on land. In the context of global change, it is important to assess which environmental variables are needed to describe changes in the content of soil organic carbon. We assessed how climatic, vegetation and edaphic variables explain the variance of soil organic carbon content in Swiss forests. Our results provide a first indication that considering the effective cation exchange capacity of soils in future biogeochemical simulations could be beneficial.
Jobin Joseph, Christoph Külls, Matthias Arend, Marcus Schaub, Frank Hagedorn, Arthur Gessler, and Markus Weiler
SOIL, 5, 49–62, https://doi.org/10.5194/soil-5-49-2019, https://doi.org/10.5194/soil-5-49-2019, 2019
Short summary
Short summary
By coupling an OA-ICOS with hydrophobic but gas-permeable membranes placed at different depths in acidic and calcareous soils, we investigated the contribution of abiotic and biotic components to total soil CO2 release. In calcareous Gleysol, CO2 originating from carbonate dissolution contributed to total soil CO2 concentration at detectable degrees, probably due to CO2 evasion from groundwater. Inward diffusion of atmospheric CO2 was found to be pronounced in the topsoil layers at both sites.
Julian Helfenstein, Jannes Jegminat, Timothy I. McLaren, and Emmanuel Frossard
Biogeosciences, 15, 105–114, https://doi.org/10.5194/bg-15-105-2018, https://doi.org/10.5194/bg-15-105-2018, 2018
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Soil solution phosphorus (P) turnover is essential for describing the bioavailability of this important nutrient. Here, we provide a derivation of calculating soil solution P turnover using parameters obtained from isotope exchange kinetic experiments. We then calculated and analyzed soil solution P turnover for 217 soils and for 18 long-term P fertilizer field experiments worldwide. Our study thus provides important insights on P dynamics in soils.
Tessa Sophia van der Voort, Frank Hagedorn, Cameron McIntyre, Claudia Zell, Lorenz Walthert, Patrick Schleppi, Xiaojuan Feng, and Timothy Ian Eglinton
Biogeosciences, 13, 3427–3439, https://doi.org/10.5194/bg-13-3427-2016, https://doi.org/10.5194/bg-13-3427-2016, 2016
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This study explores heterogeneity in 14C content of soil organic matter (SOM) at different spatial scales and across climatic and geologic gradients, which is essential for a better understanding of SOM stability. Results reveal that despite dissimilar environmental conditions, 14C contents in topsoils is relatively uniform and 14C trends with depth are similar. Plot-scale variability is significant. Statistical analysis found a significant correlation of 14C contents (0–5 cm) and temperature.
Emmanuel Frossard, Nina Buchmann, Else K. Bünemann, Delwende I. Kiba, François Lompo, Astrid Oberson, Federica Tamburini, and Ouakoltio Y. A. Traoré
SOIL, 2, 83–99, https://doi.org/10.5194/soil-2-83-2016, https://doi.org/10.5194/soil-2-83-2016, 2016
C. von Sperber, F. Tamburini, B. Brunner, S. M. Bernasconi, and E. Frossard
Biogeosciences, 12, 4175–4184, https://doi.org/10.5194/bg-12-4175-2015, https://doi.org/10.5194/bg-12-4175-2015, 2015
J. Schwaab, M. Bavay, E. Davin, F. Hagedorn, F. Hüsler, M. Lehning, M. Schneebeli, E. Thürig, and P. Bebi
Biogeosciences, 12, 467–487, https://doi.org/10.5194/bg-12-467-2015, https://doi.org/10.5194/bg-12-467-2015, 2015
Related subject area
Biogeochemistry: Soils
Effects of basalt, concrete fines, and steel slag on maize growth and toxic trace element accumulation in an enhanced weathering experiment
Depth effects of long-term organic residue application on soil organic carbon stocks in central Kenya
Validating laboratory predictions of soil rewetting respiration pulses using field data
Modelling the effect of climate–substrate interactions on soil organic matter decomposition with the Jena Soil Model
Solubility characteristics of soil humic substances as a function of pH: mechanisms and biogeochemical perspectives
Exploring microscale heterogeneity as a driver of biogeochemical transformations and gas transport in peat
Dissolved organic matter fosters core mercury-methylating microbiomes for methylmercury production in paddy soils
A microbially driven and depth-explicit soil organic carbon model constrained by carbon isotopes to reduce parameter equifinality
The incubation history of soil samples strongly affects the occlusion of particulate organic matter
Earth observation reveals reduced winter wheat growth and the importance of plant available water during drought
Plutonium concentrations link soil organic matter decline to wind erosion in ploughed soils of South Africa
Soils signal key mechanisms driving greater protection of organic carbon under aspen compared to spruce forests in a North American montane ecosystem
Litter biomass as a driver of soil VOC fluxes in a Mediterranean forest
A synthesis of Sphagnum litterbag experiments: initial leaching losses bias decomposition rate estimates
Carbon and Nitrogen Dynamics in Subsoils After 20 years of Added Precipitation in a Mediterranean Grassland
Effect of straw retention and mineral fertilization on P speciation and P-transformation microorganisms in water- extractable colloids of a Vertisol
A new approach to continuous monitoring of carbon use efficiency and biosynthesis in soil microbes from measurement of CO2 and O2
Drivers of soil organic carbon from temperate to alpine forests: a model-based analysis of the Swiss forest soil inventory with Yasso20
Promoted phosphorus transformation by increasing soil microbial diversity and network complexity – A case of long-term mixed-species plantations of Eucalyptus with N-fixing tree species
Diverse organic carbon dynamics captured by radiocarbon analysis of distinct compound classes in a grassland soil
The effects of land use on soil carbon stocks in the UK
Technical note: A validated correction method to quantify organic and inorganic carbon in soils using Rock-Eval® thermal analysis
Vegetation patterns associated with nutrient availability and supply in high-elevation tropical Andean ecosystems
Technical note: An open-source, low-cost system for continuous monitoring of low nitrate concentrations in soil and open water
Long-term fertilization increases soil but not plant or microbial N in a Chihuahuan Desert grassland
Factors controlling spatiotemporal variability of soil carbon accumulation and stock estimates in a tidal salt marsh
Moisture and temperature effects on the radiocarbon signature of respired carbon dioxide to assess stability of soil carbon in the Tibetan Plateau
Non-mycorrhizal root-associated fungi increase soil C stocks and stability via diverse mechanisms
Nine years of warming and nitrogen addition in the Tibetan grassland promoted loss of soil organic carbon but did not alter the bulk change in chemical structure
Soil priming effects and involved microbial community along salt gradients
Adjustments to the Rock-Eval® thermal analysis for soil organic and inorganic carbon quantification
Ecosystem-specific patterns and drivers of global reactive iron mineral-associated organic carbon
Dark septate endophytic fungi associated with pioneer grass inhabiting volcanic deposits and their functions in promoting plant growth
Global patterns and drivers of phosphorus fractions in natural soils
Reviews and syntheses: Iron – a driver of nitrogen bioavailability in soils?
How well does ramped thermal oxidation quantify the age distribution of soil carbon? Assessing thermal stability of physically and chemically fractionated soil organic matter
Differential temperature sensitivity of intracellular metabolic processes and extracellular soil enzyme activities
Mapping soil organic carbon fractions for Australia, their stocks, and uncertainty
Technical note: The recovery rate of free particulate organic matter from soil samples is strongly affected by the method of density fractionation
Deforestation for agriculture leads to soil warming and enhanced litter decomposition in subarctic soils
Temperature sensitivity of soil organic carbon respiration along a forested elevation gradient in the Rwenzori Mountains, Uganda
The influence of elevated CO2 and soil depth on rhizosphere activity and nutrient availability in a mature Eucalyptus woodland
The paradox of assessing greenhouse gases from soils for nature-based solutions
Management-induced changes in soil organic carbon on global croplands
Pore network modeling as a new tool for determining gas diffusivity in peat
Temperature sensitivity of dark CO2 fixation in temperate forest soils
Effects of precipitation seasonality, irrigation, vegetation cycle and soil type on enhanced weathering – modeling of cropland case studies across four sites
Stable isotope profiles of soil organic carbon in forested and grassland landscapes in the Lake Alaotra basin (Madagascar): insights in past vegetation changes
Reviews and syntheses: The promise of big diverse soil data, moving current practices towards future potential
Dynamics of rare earth elements and associated major and trace elements during Douglas-fir (Pseudotsuga menziesii) and European beech (Fagus sylvatica L.) litter degradation
Jet Rijnders, Arthur Vienne, and Sara Vicca
Biogeosciences, 22, 2803–2829, https://doi.org/10.5194/bg-22-2803-2025, https://doi.org/10.5194/bg-22-2803-2025, 2025
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A mesocosm experiment was set up to investigate how maize responds to the application of basalt, concrete fines, and steel slag, using a dose–response approach. Biomass increased with basalt application but did not change with concrete fines or steel slag, except for increased tassel biomass. Mg, Ca, and Si generally increased in the crops, whereas toxic trace elements remained unaffected or even decreased in the plants. Overall, crops were positively affected by the application of silicate materials.
Claude Raoul Müller, Johan Six, Daniel Mugendi Njiru, Bernard Vanlauwe, and Marijn Van de Broek
Biogeosciences, 22, 2733–2747, https://doi.org/10.5194/bg-22-2733-2025, https://doi.org/10.5194/bg-22-2733-2025, 2025
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We studied how different organic and inorganic nutrient inputs affect soil organic carbon (SOC) down to 70 cm in Kenya. After 19 years, all organic treatments increased SOC stocks compared with the control, but mineral nitrogen had no significant effect. Manure was the organic treatment that significantly increased SOC at the deepest soil depths, as its effect could be observed down to 60 cm. Manure was the best strategy to limit SOC loss in croplands and maintain soil quality after deforestation.
Xiankun Li, Marleen Pallandt, Dilip Naidu, Johannes Rousk, Gustaf Hugelius, and Stefano Manzoni
Biogeosciences, 22, 2691–2705, https://doi.org/10.5194/bg-22-2691-2025, https://doi.org/10.5194/bg-22-2691-2025, 2025
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While laboratory studies have identified many drivers and their effects on the carbon emission pulse after rewetting of dry soils, a validation with field data is still missing. Here, we show that the carbon emission pulse in the laboratory and in the field increases with soil organic carbon and temperature, but their trends with pre-rewetting dryness and moisture increment at rewetting differ. We conclude that the laboratory findings can be partially validated.
Marleen Pallandt, Marion Schrumpf, Holger Lange, Markus Reichstein, Lin Yu, and Bernhard Ahrens
Biogeosciences, 22, 1907–1928, https://doi.org/10.5194/bg-22-1907-2025, https://doi.org/10.5194/bg-22-1907-2025, 2025
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As soils warm due to climate change, soil organic carbon (SOC) decomposes faster due to increased microbial activity, given sufficient available moisture. We modelled the microbial decomposition of plant litter and residue at different depths and found that deep soil layers are more sensitive than topsoils. Warming causes SOC loss, but its extent depends on the litter type and its temperature sensitivity, which can either counteract or amplify losses. Droughts may also counteract warming-induced SOC losses.
Xuemei Yang, Jie Zhang, Khan M. G. Mostofa, Mohammad Mohinuzzaman, H. Henry Teng, Nicola Senesi, Giorgio S. Senesi, Jie Yuan, Yu Liu, Si-Liang Li, Xiaodong Li, Baoli Wang, and Cong-Qiang Liu
Biogeosciences, 22, 1745–1765, https://doi.org/10.5194/bg-22-1745-2025, https://doi.org/10.5194/bg-22-1745-2025, 2025
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The solubility characteristics of soil humic acids (HAs), fulvic acids (FAs), and protein-like substances (PLSs) at varying pH levels remain unclear. The key findings include the following: HA solubility increases with increasing pH and decreases with decreasing pH; HApH6 and HApH1 contribute to 39.1–49.2% and 3.1–24.1% of dissolved organic carbon, respectively; and HApH2, FA, and PLSs are highly soluble at acidic pHs and are transported by ambient water. These issues are crucial for sustainable soil management.
Lukas Kohl, Petri Kiuru, Marjo Palviainen, Maarit Raivonen, Markku Koskinen, Mari Pihlatie, and Annamari Laurén
Biogeosciences, 22, 1711–1727, https://doi.org/10.5194/bg-22-1711-2025, https://doi.org/10.5194/bg-22-1711-2025, 2025
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We present an assay to illuminate heterogeneity in biogeochemical transformations within peat samples. For this, we injected isotope-labeled acetate into peat cores and monitored the release of label-derived gases, which we compared to microtomography images. The fraction of label converted to CO2 and the rapidness of this conversion were linked to injection depth and air-filled porosity.
Qiang Pu, Bo Meng, Jen-How Huang, Kun Zhang, Jiang Liu, Yurong Liu, Mahmoud A. Abdelhafiz, and Xinbin Feng
Biogeosciences, 22, 1543–1556, https://doi.org/10.5194/bg-22-1543-2025, https://doi.org/10.5194/bg-22-1543-2025, 2025
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This study examines the effect of dissolved organic matter (DOM) on microbial mercury (Hg) methylation in paddy soils. It uncovers that DOM regulates Hg methylation mainly through altering core Hg-methylating microbiome composition and boosting the growth of core Hg-methylating microorganisms. The study highlights that in the regulation of methylmercury formation in paddy soils, more attention should be paid to changes in DOM concentration and composition.
Marijn Van de Broek, Gerard Govers, Marion Schrumpf, and Johan Six
Biogeosciences, 22, 1427–1446, https://doi.org/10.5194/bg-22-1427-2025, https://doi.org/10.5194/bg-22-1427-2025, 2025
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Soil organic carbon models are used to predict how soils affect the concentration of CO2 in the atmosphere. We show that equifinality – the phenomenon that different parameter values lead to correct overall model outputs, albeit with a different model behaviour – is an important source of model uncertainty. Our results imply that adding more complexity to soil organic carbon models is unlikely to lead to better predictions as long as more data to constrain model parameters are not available.
Frederick Büks, Sabine Dumke, and Julia König
EGUsphere, https://doi.org/10.5194/egusphere-2025-771, https://doi.org/10.5194/egusphere-2025-771, 2025
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Ultrasonication followed by density fractionation is a frequently used method to determine soil structural stability and the amount of occluded particulate organic matter. Our analyses of three sandy, silty and loamy soils showed that air-drying and gentle rewetting changes SOM fractions depending on the subsequent time of reincubation compared to field-fresh samples. This is important, since e.g. the measurement of archived soils require the handling of air-dried samples.
Hanna Sjulgård, Lukas Valentin Graf, Tino Colombi, Juliane Hirte, Thomas Keller, and Helge Aasen
Biogeosciences, 22, 1341–1354, https://doi.org/10.5194/bg-22-1341-2025, https://doi.org/10.5194/bg-22-1341-2025, 2025
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Our study showed that stress-related crop response to changing environmental conditions can be detected by monitoring crops using satellite images at the landscape level. This could be useful for farmers to identify when stresses occur. Our results also suggest that satellite imagery can be used to discover soil impacts on crop development at farm fields. The inclusion of soil properties in satellite image analyses could further improve the accuracy of the prediction of drought stress on crops.
Joel Mohren, Hendrik Wiesel, Wulf Amelung, L. Keith Fifield, Alexandra Sandhage-Hofmann, Erik Strub, Steven A. Binnie, Stefan Heinze, Elmarie Kotze, Chris Du Preez, Stephen G. Tims, and Tibor J. Dunai
Biogeosciences, 22, 1077–1094, https://doi.org/10.5194/bg-22-1077-2025, https://doi.org/10.5194/bg-22-1077-2025, 2025
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We measured concentrations of nuclear fallout in soil samples taken from arable land in South Africa. We find that during the second half of the 20th century, the data strongly correlate with the organic matter content of the soils. The finding implies that wind erosion strongly influenced the loss of organic matter in the soils we investigated. Furthermore, the exponential decline of fallout concentrations and organic matter content over time peaks shortly after native grassland is ploughed.
Lena Wang, Sharon Billings, Li Li, Daniel Hirmas, Keira Johnson, Devon Kerins, Julio Pachon, Curtis Beutler, Karla Jarecke, Vaishnavi Varikuti, Micah Unruh, Hoori Ajami, Holly Barnard, Alejandro Flores, Kenneth Williams, and Pamela Sullivan
EGUsphere, https://doi.org/10.5194/egusphere-2025-70, https://doi.org/10.5194/egusphere-2025-70, 2025
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Our study looked at how different forest types and conditions affected soil microbes, and soil carbon and stability. Aspen organic matter led to higher microbial activity, smaller soil aggregates, and more stable soil carbon, possibly reducing dissolved organic carbon movement from hillslopes to streams. This shows the importance of models like the Microbial Efficiency – Matrix Stabilization framework for predicting CO2 release, soil carbon stability, and carbon movement.
Manon Rocco, Julien Kammer, Mathieu Santonja, Brice Temime-Roussel, Cassandra Saignol, Caroline Lecareux, Etienne Quivet, Henri Wortham, and Elena Ormeno
EGUsphere, https://doi.org/10.5194/egusphere-2025-54, https://doi.org/10.5194/egusphere-2025-54, 2025
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Soil emissions of biogenic volatile organic compounds (BVOCs) play a significant role in ecosystems, yet the impact of litter accumulation on these emissions is often overlooked, particularly in Mediterranean deciduous forests. A study in downy oak forest identified over 135 BVOCs, many absorbed by the soil, while others were emitted and increased with litter biomass. This underscores the critical role of litter and microbial activity in shaping soil BVOC dynamics under changing climates.
Henning Teickner, Edzer Pebesma, and Klaus-Holger Knorr
Biogeosciences, 22, 417–433, https://doi.org/10.5194/bg-22-417-2025, https://doi.org/10.5194/bg-22-417-2025, 2025
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Decomposition rates for Sphagnum mosses, the main peat-forming plants in northern peatlands, are often derived from litterbag experiments. Here, we estimate initial leaching losses from available Sphagnum litterbag experiments and analyze how decomposition rates are biased when initial leaching losses are ignored. Our analyses indicate that initial leaching losses range between 3 to 18 mass-% and that this may result in overestimated mass losses when extrapolated to several decades.
Leila Maria Wahab, Sora Kim, and Asmeret Asefaw Berhe
EGUsphere, https://doi.org/10.5194/egusphere-2024-3607, https://doi.org/10.5194/egusphere-2024-3607, 2025
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Soils are a large reservoir of carbon on land and there is uncertainty regarding how it will be affected by climate change. There is still active research about how changing precipitation patterns, a key aspect of climate change, will affect soil carbon and furthermore how vulnerable subsoils are to climate change. In this study, we studied subsoils after 20 years of experimentally manipulated precipitation shifts to see whether increasing precipitation would affect carbon amounts and chemistry.
Shanshan Bai, Yifei Ge, Dongtan Yao, Yifan Wang, Jinfang Tan, Shuai Zhang, Yutao Peng, and Xiaoqian Jiang
Biogeosciences, 22, 135–151, https://doi.org/10.5194/bg-22-135-2025, https://doi.org/10.5194/bg-22-135-2025, 2025
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Mineral fertilization led to increases in total P, available P, high-activity inorganic P fractions, and organic P but reduced the abundance of P-cycling genes by decreasing soil pH and increasing P in bulk soil. Straw retention enhanced organic carbon, total P, and available P concentrations in water-extractable colloids (WECs). Abundances of the phoD gene and phoD-harboring Proteobacteria in WECs were elevated under straw retention, suggesting an increase in P-mineralization capacity.
Kyle E. Smart, Daniel O. Breecker, Christopher B. Blackwood, and Timothy M. Gallagher
Biogeosciences, 22, 87–101, https://doi.org/10.5194/bg-22-87-2025, https://doi.org/10.5194/bg-22-87-2025, 2025
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When microbes consume carbon within soils, it is important to know how much carbon is respired and lost as carbon dioxide versus how much is used to make new biomass. We used a new approach of monitoring carbon dioxide and oxygen to track the fate of consumed carbon during a series of laboratory experiments where sugar was added to moistened soil. Our approach allowed us to estimate how much sugar was converted to dead microbial biomass, which is more likely to be preserved in soils.
Claudia Guidi, Sia Gosheva-Oney, Markus Didion, Roman Flury, Lorenz Walthert, Stephan Zimmermann, Brian J. Oney, Pascal A. Niklaus, Esther Thürig, Toni Viskari, Jari Liski, and Frank Hagedorn
EGUsphere, https://doi.org/10.5194/egusphere-2024-3788, https://doi.org/10.5194/egusphere-2024-3788, 2024
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Predicting soil organic carbon (SOC) stocks in forests is crucial for assessing C balance, yet drivers of SOC stocks remain uncertain at large scales. Across a broad environmental gradient in Switzerland, we compared measured SOC stocks with those modelled by Yasso20, commonly used for GHG budgets. Our results show that soil mineral properties and climate are main controls of SOC stocks, indicating that better accounting of these processes will advance accuracy of SOC stock predictions.
Jiyin Li, Yeming You, Wen Zhang, Yi Wang, Yuying Liang, Haimei Huang, Hailun Ma, Qinxia He, Angang Ming, and Xueman Huang
EGUsphere, https://doi.org/10.5194/egusphere-2024-3456, https://doi.org/10.5194/egusphere-2024-3456, 2024
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Monoculture of Eucalyptus can lead to soil degradation. In this study, we introduced nitrogen-fixing species in Eucalyptus plantations and investigated the effect of the introduction of nitrogen-fixing species on soil phosphorus transformation by soil microorganisms and their nitrogen-phosphorus cycling functional genes, which may be a promising forest management strategy to improve ecosystem phosphorus benefits.
Katherine E. Grant, Marisa N. Repasch, Kari M. Finstad, Julia D. Kerr, Maxwell Marple, Christopher J. Larson, Taylor A. B. Broek, Jennifer Pett-Ridge, and Karis J. McFarlane
Biogeosciences, 21, 4395–4411, https://doi.org/10.5194/bg-21-4395-2024, https://doi.org/10.5194/bg-21-4395-2024, 2024
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Soils store organic carbon composed of multiple compounds from plants and microbes for different lengths of time. To understand how soils store these different carbon types, we measure the time each carbon fraction is in a grassland soil profile. Our results show that the length of time each individual soil fraction is in our soil changes. Our approach allows a detailed look at the different components in soils. This study can help improve our understanding of soil dynamics.
Peter Levy, Laura Bentley, Peter Danks, Bridget Emmett, Angus Garbutt, Stephen Heming, Peter Henrys, Aidan Keith, Inma Lebron, Niall McNamara, Richard Pywell, John Redhead, David Robinson, and Alexander Wickenden
Biogeosciences, 21, 4301–4315, https://doi.org/10.5194/bg-21-4301-2024, https://doi.org/10.5194/bg-21-4301-2024, 2024
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We collated a large data set (15 790 soil cores) on soil carbon stock in different land uses. Soil carbon stocks were highest in woodlands and lowest in croplands. The variability in the effects was large. This has important implications for agri-environment schemes seeking to sequester carbon in the soil by altering land use because the effect of a given intervention is very hard to verify.
Marija Stojanova, Pierre Arbelet, François Baudin, Nicolas Bouton, Giovanni Caria, Lorenza Pacini, Nicolas Proix, Edouard Quibel, Achille Thin, and Pierre Barré
Biogeosciences, 21, 4229–4237, https://doi.org/10.5194/bg-21-4229-2024, https://doi.org/10.5194/bg-21-4229-2024, 2024
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Because of its importance for climate regulation and soil health, many studies focus on carbon dynamics in soils. However, quantifying organic and inorganic carbon remains an issue in carbonated soils. In this technical note, we propose a validated correction method to quantify organic and inorganic carbon in soils using Rock-Eval® thermal analysis. With this correction, the Rock-Eval® method has the potential to become the standard method for quantifying carbon in carbonate soils.
Armando Molina, Veerle Vanacker, Oliver Chadwick, Santiago Zhiminaicela, Marife Corre, and Edzo Veldkamp
Biogeosciences, 21, 3075–3091, https://doi.org/10.5194/bg-21-3075-2024, https://doi.org/10.5194/bg-21-3075-2024, 2024
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The tropical Andes contains unique landscapes where forest patches are surrounded by tussock grasses and cushion-forming plants. The aboveground vegetation composition informs us about belowground nutrient availability: patterns in plant-available nutrients resulted from strong biocycling of cations and removal of soil nutrients by plant uptake or leaching. Future changes in vegetation distribution will affect soil water and solute fluxes and the aquatic ecology of Andean rivers and lakes.
Sahiti Bulusu, Cristina Prieto García, Helen E. Dahlke, and Elad Levintal
Biogeosciences, 21, 3007–3013, https://doi.org/10.5194/bg-21-3007-2024, https://doi.org/10.5194/bg-21-3007-2024, 2024
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Do-it-yourself hardware is a new way to improve measurement resolution. We present a low-cost, automated system for field measurements of low nitrate concentrations in soil porewater and open water bodies. All data hardware components cost USD 1100, which is much cheaper than other available commercial solutions. We provide the complete building guide to reduce technical barriers, which we hope will allow easier reproducibility and set up new soil and environmental monitoring applications.
Violeta Mendoza-Martinez, Scott L. Collins, and Jennie R. McLaren
Biogeosciences, 21, 2655–2667, https://doi.org/10.5194/bg-21-2655-2024, https://doi.org/10.5194/bg-21-2655-2024, 2024
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We examine the impacts of multi-decadal nitrogen additions on a dryland ecosystem N budget, including the soil, microbial, and plant N pools. After 26 years, there appears to be little impact on the soil microbial or plant community and only minimal increases in N pools within the soil. While perhaps encouraging from a conservation standpoint, we calculate that greater than 95 % of the nitrogen added to the system is not retained and is instead either lost deeper in the soil or emitted as gas.
Sean Fettrow, Andrew Wozniak, Holly A. Michael, and Angelia L. Seyfferth
Biogeosciences, 21, 2367–2384, https://doi.org/10.5194/bg-21-2367-2024, https://doi.org/10.5194/bg-21-2367-2024, 2024
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Salt marshes play a big role in global carbon (C) storage, and C stock estimates are used to predict future changes. However, spatial and temporal gradients in C burial rates over the landscape exist due to variations in water inundation, dominant plant species and stage of growth, and tidal action. We quantified soil C concentrations in soil cores across time and space beside several porewater biogeochemical variables and discussed the controls on variability in soil C in salt marsh ecosystems.
Andrés Tangarife-Escobar, Georg Guggenberger, Xiaojuan Feng, Guohua Dai, Carolina Urbina-Malo, Mina Azizi-Rad, and Carlos A. Sierra
Biogeosciences, 21, 1277–1299, https://doi.org/10.5194/bg-21-1277-2024, https://doi.org/10.5194/bg-21-1277-2024, 2024
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Soil organic matter stability depends on future temperature and precipitation scenarios. We used radiocarbon (14C) data and model predictions to understand how the transit time of carbon varies under environmental change in grasslands and peatlands. Soil moisture affected the Δ14C of peatlands, while temperature did not have any influence. Our models show the correspondence between Δ14C and transit time and could allow understanding future interactions between terrestrial and atmospheric carbon
Emiko K. Stuart, Laura Castañeda-Gómez, Wolfram Buss, Jeff R. Powell, and Yolima Carrillo
Biogeosciences, 21, 1037–1059, https://doi.org/10.5194/bg-21-1037-2024, https://doi.org/10.5194/bg-21-1037-2024, 2024
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We inoculated wheat plants with various types of fungi whose impacts on soil carbon are poorly understood. After several months of growth, we examined both their impacts on soil carbon and the underlying mechanisms using multiple methods. Overall the fungi benefitted the storage of carbon in soil, mainly by improving the stability of pre-existing carbon, but several pathways were involved. This study demonstrates their importance for soil carbon storage and, therefore, climate change mitigation.
Huimin Sun, Michael W. I. Schmidt, Jintao Li, Jinquan Li, Xiang Liu, Nicholas O. E. Ofiti, Shurong Zhou, and Ming Nie
Biogeosciences, 21, 575–589, https://doi.org/10.5194/bg-21-575-2024, https://doi.org/10.5194/bg-21-575-2024, 2024
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A soil organic carbon (SOC) molecular structure suggested that the easily decomposable and stabilized SOC is similarly affected after 9-year warming and N treatments despite large changes in SOC stocks. Given the long residence time of some SOC, the similar loss of all measurable chemical forms of SOC under global change treatments could have important climate consequences.
Haoli Zhang, Doudou Chang, Zhifeng Zhu, Chunmei Meng, and Kaiyong Wang
Biogeosciences, 21, 1–11, https://doi.org/10.5194/bg-21-1-2024, https://doi.org/10.5194/bg-21-1-2024, 2024
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Soil salinity mediates microorganisms and soil processes like soil organic carbon (SOC) cycling. We observed that negative priming effects at the early stages might be due to the preferential utilization of cottonseed meal. The positive priming that followed decreased with the increase in salinity.
Joséphine Hazera, David Sebag, Isabelle Kowalewski, Eric Verrecchia, Herman Ravelojaona, and Tiphaine Chevallier
Biogeosciences, 20, 5229–5242, https://doi.org/10.5194/bg-20-5229-2023, https://doi.org/10.5194/bg-20-5229-2023, 2023
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This study adapts the Rock-Eval® protocol to quantify soil organic carbon (SOC) and soil inorganic carbon (SIC) on a non-pretreated soil aliquot. The standard protocol properly estimates SOC contents once the TOC parameter is corrected. However, it cannot complete the thermal breakdown of SIC amounts > 4 mg, leading to an underestimation of high SIC contents by the MinC parameter, even after correcting for this. Thus, the final oxidation isotherm is extended to 7 min to quantify any SIC amount.
Bo Zhao, Amin Dou, Zhiwei Zhang, Zhenyu Chen, Wenbo Sun, Yanli Feng, Xiaojuan Wang, and Qiang Wang
Biogeosciences, 20, 4761–4774, https://doi.org/10.5194/bg-20-4761-2023, https://doi.org/10.5194/bg-20-4761-2023, 2023
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This study provided a comprehensive analysis of the spatial variability and determinants of Fe-bound organic carbon (Fe-OC) among terrestrial, wetland, and marine ecosystems and its governing factors globally. We illustrated that reactive Fe was not only an important sequestration mechanism for OC in terrestrial ecosystems but also an effective “rusty sink” of OC preservation in wetland and marine ecosystems, i.e., a key factor for long-term OC storage in global ecosystems.
Han Sun, Tomoyasu Nishizawa, Hiroyuki Ohta, and Kazuhiko Narisawa
Biogeosciences, 20, 4737–4749, https://doi.org/10.5194/bg-20-4737-2023, https://doi.org/10.5194/bg-20-4737-2023, 2023
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In this research, we assessed the diversity and function of the dark septate endophytic (DSE) fungi community associated with Miscanthus condensatus root in volcanic ecosystems. Both metabarcoding and isolation were adopted in this study. We further validated effects on plant growth by inoculation of some core DSE isolates. This study helps improve our understanding of the role of Miscanthus condensatus-associated DSE fungi during the restoration of post-volcanic ecosystems.
Xianjin He, Laurent Augusto, Daniel S. Goll, Bruno Ringeval, Ying-Ping Wang, Julian Helfenstein, Yuanyuan Huang, and Enqing Hou
Biogeosciences, 20, 4147–4163, https://doi.org/10.5194/bg-20-4147-2023, https://doi.org/10.5194/bg-20-4147-2023, 2023
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We identified total soil P concentration as the most important predictor of all soil P pool concentrations, except for primary mineral P concentration, which is primarily controlled by soil pH and only secondarily by total soil P concentration. We predicted soil P pools’ distributions in natural systems, which can inform assessments of the role of natural P availability for ecosystem productivity, climate change mitigation, and the functioning of the Earth system.
Imane Slimani, Xia Zhu-Barker, Patricia Lazicki, and William Horwath
Biogeosciences, 20, 3873–3894, https://doi.org/10.5194/bg-20-3873-2023, https://doi.org/10.5194/bg-20-3873-2023, 2023
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There is a strong link between nitrogen availability and iron minerals in soils. These minerals have multiple outcomes for nitrogen availability depending on soil conditions and properties. For example, iron can limit microbial degradation of nitrogen in aerated soils but has opposing outcomes in non-aerated soils. This paper focuses on the multiple ways iron can affect nitrogen bioavailability in soils.
Shane W. Stoner, Marion Schrumpf, Alison Hoyt, Carlos A. Sierra, Sebastian Doetterl, Valier Galy, and Susan Trumbore
Biogeosciences, 20, 3151–3163, https://doi.org/10.5194/bg-20-3151-2023, https://doi.org/10.5194/bg-20-3151-2023, 2023
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Soils store more carbon (C) than any other terrestrial C reservoir, but the processes that control how much C stays in soil, and for how long, are very complex. Here, we used a recent method that involves heating soil in the lab to measure the range of C ages in soil. We found that most C in soil is decades to centuries old, while some stays for much shorter times (days to months), and some is thousands of years old. Such detail helps us to estimate how soil C may react to changing climate.
Adetunji Alex Adekanmbi, Laurence Dale, Liz Shaw, and Tom Sizmur
Biogeosciences, 20, 2207–2219, https://doi.org/10.5194/bg-20-2207-2023, https://doi.org/10.5194/bg-20-2207-2023, 2023
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The decomposition of soil organic matter and flux of carbon dioxide are expected to increase as temperatures rise. However, soil organic matter decomposition is a two-step process whereby large molecules are first broken down outside microbial cells and then respired within microbial cells. We show here that these two steps are not equally sensitive to increases in soil temperature and that global warming may cause a shift in the rate-limiting step from outside to inside the microbial cell.
Mercedes Román Dobarco, Alexandre M. J-C. Wadoux, Brendan Malone, Budiman Minasny, Alex B. McBratney, and Ross Searle
Biogeosciences, 20, 1559–1586, https://doi.org/10.5194/bg-20-1559-2023, https://doi.org/10.5194/bg-20-1559-2023, 2023
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Soil organic carbon (SOC) is of a heterogeneous nature and varies in chemistry, stabilisation mechanisms, and persistence in soil. In this study we mapped the stocks of SOC fractions with different characteristics and turnover rates (presumably PyOC >= MAOC > POC) across Australia, combining spectroscopy and digital soil mapping. The SOC stocks (0–30 cm) were estimated as 13 Pg MAOC, 2 Pg POC, and 5 Pg PyOC.
Frederick Büks
Biogeosciences, 20, 1529–1535, https://doi.org/10.5194/bg-20-1529-2023, https://doi.org/10.5194/bg-20-1529-2023, 2023
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Ultrasonication with density fractionation of soils is a commonly used method to separate soil organic matter pools, which is, e.g., important to calculate carbon turnover in landscapes. It is shown that the approach that merges soil and dense solution without mixing has a low recovery rate and causes co-extraction of parts of the retained labile pool along with the intermediate pool. An alternative method with high recovery rates and no cross-contamination was recommended.
Tino Peplau, Christopher Poeplau, Edward Gregorich, and Julia Schroeder
Biogeosciences, 20, 1063–1074, https://doi.org/10.5194/bg-20-1063-2023, https://doi.org/10.5194/bg-20-1063-2023, 2023
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We buried tea bags and temperature loggers in a paired-plot design in soils under forest and agricultural land and retrieved them after 2 years to quantify the effect of land-use change on soil temperature and litter decomposition in subarctic agricultural systems. We could show that agricultural soils were on average 2 °C warmer than forests and that litter decomposition was enhanced. The results imply that deforestation amplifies effects of climate change on soil organic matter dynamics.
Joseph Okello, Marijn Bauters, Hans Verbeeck, Samuel Bodé, John Kasenene, Astrid Françoys, Till Engelhardt, Klaus Butterbach-Bahl, Ralf Kiese, and Pascal Boeckx
Biogeosciences, 20, 719–735, https://doi.org/10.5194/bg-20-719-2023, https://doi.org/10.5194/bg-20-719-2023, 2023
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The increase in global and regional temperatures has the potential to drive accelerated soil organic carbon losses in tropical forests. We simulated climate warming by translocating intact soil cores from higher to lower elevations. The results revealed increasing temperature sensitivity and decreasing losses of soil organic carbon with increasing elevation. Our results suggest that climate warming may trigger enhanced losses of soil organic carbon from tropical montane forests.
Johanna Pihlblad, Louise C. Andresen, Catriona A. Macdonald, David S. Ellsworth, and Yolima Carrillo
Biogeosciences, 20, 505–521, https://doi.org/10.5194/bg-20-505-2023, https://doi.org/10.5194/bg-20-505-2023, 2023
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Elevated CO2 in the atmosphere increases forest biomass productivity when growth is not limited by soil nutrients. This study explores how mature trees stimulate soil availability of nitrogen and phosphorus with free-air carbon dioxide enrichment after 5 years of fumigation. We found that both nutrient availability and processes feeding available pools increased in the rhizosphere, and phosphorus increased at depth. This appears to not be by decomposition but by faster recycling of nutrients.
Rodrigo Vargas and Van Huong Le
Biogeosciences, 20, 15–26, https://doi.org/10.5194/bg-20-15-2023, https://doi.org/10.5194/bg-20-15-2023, 2023
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Quantifying the role of soils in nature-based solutions requires accurate estimates of soil greenhouse gas (GHG) fluxes. We suggest that multiple GHG fluxes should not be simultaneously measured at a few fixed time intervals, but an optimized sampling approach can reduce bias and uncertainty. Our results have implications for assessing GHG fluxes from soils and a better understanding of the role of soils in nature-based solutions.
Kristine Karstens, Benjamin Leon Bodirsky, Jan Philipp Dietrich, Marta Dondini, Jens Heinke, Matthias Kuhnert, Christoph Müller, Susanne Rolinski, Pete Smith, Isabelle Weindl, Hermann Lotze-Campen, and Alexander Popp
Biogeosciences, 19, 5125–5149, https://doi.org/10.5194/bg-19-5125-2022, https://doi.org/10.5194/bg-19-5125-2022, 2022
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Soil organic carbon (SOC) has been depleted by anthropogenic land cover change and agricultural management. While SOC models often simulate detailed biochemical processes, the management decisions are still little investigated at the global scale. We estimate that soils have lost around 26 GtC relative to a counterfactual natural state in 1975. Yet, since 1975, SOC has been increasing again by 4 GtC due to a higher productivity, recycling of crop residues and manure, and no-tillage practices.
Petri Kiuru, Marjo Palviainen, Arianna Marchionne, Tiia Grönholm, Maarit Raivonen, Lukas Kohl, and Annamari Laurén
Biogeosciences, 19, 5041–5058, https://doi.org/10.5194/bg-19-5041-2022, https://doi.org/10.5194/bg-19-5041-2022, 2022
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Peatlands are large carbon stocks. Emissions of carbon dioxide and methane from peatlands may increase due to changes in management and climate. We studied the variation in the gas diffusivity of peat with depth using pore network simulations and laboratory experiments. Gas diffusivity was found to be lower in deeper peat with smaller pores and lower pore connectivity. However, gas diffusivity was not extremely low in wet conditions, which may reflect the distinctive structure of peat.
Rachael Akinyede, Martin Taubert, Marion Schrumpf, Susan Trumbore, and Kirsten Küsel
Biogeosciences, 19, 4011–4028, https://doi.org/10.5194/bg-19-4011-2022, https://doi.org/10.5194/bg-19-4011-2022, 2022
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Soils will likely become warmer in the future, and this can increase the release of carbon dioxide (CO2) into the atmosphere. As microbes can take up soil CO2 and prevent further escape into the atmosphere, this study compares the rate of uptake and release of CO2 at two different temperatures. With warming, the rate of CO2 uptake increases less than the rate of release, indicating that the capacity to modulate soil CO2 release into the atmosphere will decrease under future warming.
Giuseppe Cipolla, Salvatore Calabrese, Amilcare Porporato, and Leonardo V. Noto
Biogeosciences, 19, 3877–3896, https://doi.org/10.5194/bg-19-3877-2022, https://doi.org/10.5194/bg-19-3877-2022, 2022
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Enhanced weathering (EW) is a promising strategy for carbon sequestration. Since models may help to characterize field EW, the present work applies a hydro-biogeochemical model to four case studies characterized by different rainfall seasonality, vegetation and soil type. Rainfall seasonality strongly affects EW dynamics, but low carbon sequestration suggests that an in-depth analysis at the global scale is required to see if EW may be effective to mitigate climate change.
Vao Fenotiana Razanamahandry, Marjolein Dewaele, Gerard Govers, Liesa Brosens, Benjamin Campforts, Liesbet Jacobs, Tantely Razafimbelo, Tovonarivo Rafolisy, and Steven Bouillon
Biogeosciences, 19, 3825–3841, https://doi.org/10.5194/bg-19-3825-2022, https://doi.org/10.5194/bg-19-3825-2022, 2022
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In order to shed light on possible past vegetation shifts in the Central Highlands of Madagascar, we measured stable isotope ratios of organic carbon in soil profiles along both forested and grassland hillslope transects in the Lake Alaotra region. Our results show that the landscape of this region was more forested in the past: soils in the C4-dominated grasslands contained a substantial fraction of C3-derived carbon, increasing with depth.
Katherine E. O. Todd-Brown, Rose Z. Abramoff, Jeffrey Beem-Miller, Hava K. Blair, Stevan Earl, Kristen J. Frederick, Daniel R. Fuka, Mario Guevara Santamaria, Jennifer W. Harden, Katherine Heckman, Lillian J. Heran, James R. Holmquist, Alison M. Hoyt, David H. Klinges, David S. LeBauer, Avni Malhotra, Shelby C. McClelland, Lucas E. Nave, Katherine S. Rocci, Sean M. Schaeffer, Shane Stoner, Natasja van Gestel, Sophie F. von Fromm, and Marisa L. Younger
Biogeosciences, 19, 3505–3522, https://doi.org/10.5194/bg-19-3505-2022, https://doi.org/10.5194/bg-19-3505-2022, 2022
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Research data are becoming increasingly available online with tantalizing possibilities for reanalysis. However harmonizing data from different sources remains challenging. Using the soils community as an example, we walked through the various strategies that researchers currently use to integrate datasets for reanalysis. We find that manual data transcription is still extremely common and that there is a critical need for community-supported informatics tools like vocabularies and ontologies.
Alessandro Montemagno, Christophe Hissler, Victor Bense, Adriaan J. Teuling, Johanna Ziebel, and Laurent Pfister
Biogeosciences, 19, 3111–3129, https://doi.org/10.5194/bg-19-3111-2022, https://doi.org/10.5194/bg-19-3111-2022, 2022
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We investigated the biogeochemical processes that dominate the release and retention of elements (nutrients and potentially toxic elements) during litter degradation. Our results show that toxic elements are retained in the litter, while nutrients are released in solution during the first stages of degradation. This seems linked to the capability of trees to distribute the elements between degradation-resistant and non-degradation-resistant compounds of leaves according to their chemical nature.
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Short summary
At treeline, plant species change abruptly from low-stature plants in tundra to trees in forests. Our study documents that from tundra towards forest, the litter layer becomes strongly enriched in nutrients. We show that these litter quality changes alter nutrient processing by soil microbes and increase nutrient release during decomposition in forests compared to tundra. The associated improvement in nutrient availability in forests potentially stimulates tree growth and treeline shifts.
At treeline, plant species change abruptly from low-stature plants in tundra to trees in...
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