Articles | Volume 23, issue 13
https://doi.org/10.5194/bg-23-4485-2026
© Author(s) 2026. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-23-4485-2026
© Author(s) 2026. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
06 Jul 2026
Research article |
| 06 Jul 2026
| 06 Jul 2026
Archaeal community composition in Holocene methane pockmarks of the Gdańsk Basin (Baltic Sea, Poland): insights from tetraether lipids and 16S rRNA analysis
Izabela De Mey-Śnieżyńska
CORRESPONDING AUTHOR
University of Warsaw, Faculty of Geology, 02-089 Warsaw, Poland
Mirosław Słowakiewicz
University of Warsaw, Faculty of Geology, 02-089 Warsaw, Poland
Francien Peterse
Utrecht University, Department of Earth Sciences, 3584 CS Utrecht, The Netherlands
Aleksandra Brodecka-Goluch
University of Gdańsk, Faculty of Oceanography and Geography, 81-379 Gdynia, Poland
Andrzej Borkowski
AGH University of Krakow, Faculty of Geology, Geophysics and Environmental Protection, 30-059 Kraków, Poland
Katarzyna Łukawska-Matuszewska
University of Gdańsk, Faculty of Oceanography and Geography, 81-379 Gdynia, Poland
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EGUsphere, https://doi.org/10.5194/egusphere-2026-1238, https://doi.org/10.5194/egusphere-2026-1238, 2026
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Sedimentary processes play a crucial role in regulating the marine carbon cycle. This includes the critical roles of methanogenesis and anaerobic methane oxidation, especially when combined with freshening of pore water, which enhances the generation of dissolved inorganic carbon and promotes carbonate precipitation in sediments; additionally, methane-bearing sediments are a more significant source of dissolved inorganic carbon to overlying water than those lacking significant methanogenesis.
Laura Kellner, Karen Dybkjær, Stefan Piasecki, Julie Fredborg, Francien Peterse, Erik S. Rasmussen, Manuel Vieira, Lígia Castro, and Kasia K. Śliwińska
J. Micropalaeontol., 44, 509–539, https://doi.org/10.5194/jm-44-509-2025, https://doi.org/10.5194/jm-44-509-2025, 2025
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We analysed Miocene dinocyst taxa and organic particle assemblages along a distal–proximal transect in the North Sea Basin. Based on distal and shallow marine successions, we reconstruct depositional changes across the Miocene Climatic Optimum (MCO; ~16.9–14.7 Ma) and use dinocysts as palaeoclimate proxies. Additionally, we provide five GDGT-derived sea surface temperature data points that support our dinocyst-based climate interpretation.
Peter K. Bijl, Kasia K. Śliwińska, Bella Duncan, Arnaud Huguet, Sebastian Naeher, Ronnakrit Rattanasriampaipong, Claudia Sosa-Montes de Oca, Alexandra Auderset, Melissa A. Berke, Bum Soo Kim, Nina Davtian, Tom Dunkley Jones, Desmond D. Eefting, Felix J. Elling, Pierrick Fenies, Gordon N. Inglis, Lauren O'Connor, Richard D. Pancost, Francien Peterse, Addison Rice, Appy Sluijs, Devika Varma, Wenjie Xiao, and Yi Ge Zhang
Biogeosciences, 22, 6465–6508, https://doi.org/10.5194/bg-22-6465-2025, https://doi.org/10.5194/bg-22-6465-2025, 2025
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Many academic laboratories worldwide process environmental samples for analysis of membrane lipid molecules of archaea, for the reconstruction of past environmental conditions. However, the sample workup scheme involves many steps, each of which has a risk of contamination or bias, affecting the results. This paper reviews steps involved in sampling, extraction and analysis of lipids, interpretation and archiving of the data. This ensures reproducible, reusable, comparable and consistent data.
Jingjing Guo, Martin Ziegler, Louise Fuchs, Youbin Sun, and Francien Peterse
Clim. Past, 21, 343–355, https://doi.org/10.5194/cp-21-343-2025, https://doi.org/10.5194/cp-21-343-2025, 2025
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In this study, we use the distribution of soil bacterial membrane lipids stored on the Chinese Loess Plateau (CLP) to quantitatively reconstruct variations in precipitation amount over the past 130 kyr. The precipitation record shows orbital- and millennial-scale variations and varies at precession and obliquity scale. The application of this precipitation proxy across the CLP indicates a more pronounced spatial gradient during glacials, when the western CLP experiences more arid conditions.
Allix J. Baxter, Francien Peterse, Dirk Verschuren, Aihemaiti Maitituerdi, Nicolas Waldmann, and Jaap S. Sinninghe Damsté
Biogeosciences, 21, 2877–2908, https://doi.org/10.5194/bg-21-2877-2024, https://doi.org/10.5194/bg-21-2877-2024, 2024
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This study investigates the impact of long-term lake-system evolution on the climate signal recorded by glycerol dialkyl glycerol tetraethers (GDGTs), a popular biomarker in paleoclimate research. It compares downcore changes in GDGTs in the 250 000 year sediment sequence of Lake Chala (Kenya/Tanzania) to independent data for lake mixing and water-column chemistry. These factors influence the GDGT proxies in the earliest depositional phases (before ~180 ka), confounding the climate signal.
Chris D. Fokkema, Tobias Agterhuis, Danielle Gerritsma, Myrthe de Goeij, Xiaoqing Liu, Pauline de Regt, Addison Rice, Laurens Vennema, Claudia Agnini, Peter K. Bijl, Joost Frieling, Matthew Huber, Francien Peterse, and Appy Sluijs
Clim. Past, 20, 1303–1325, https://doi.org/10.5194/cp-20-1303-2024, https://doi.org/10.5194/cp-20-1303-2024, 2024
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Polar amplification (PA) is a key uncertainty in climate projections. The factors that dominantly control PA are difficult to separate. Here we provide an estimate for the non-ice-related PA by reconstructing tropical ocean temperature variability from the ice-free early Eocene, which we compare to deep-ocean-derived high-latitude temperature variability across short-lived warming periods. We find a PA factor of 1.7–2.3 on 20 kyr timescales, which is somewhat larger than model estimates.
Yord W. Yedema, Timme Donders, Francien Peterse, and Francesca Sangiorgi
J. Micropalaeontol., 42, 257–276, https://doi.org/10.5194/jm-42-257-2023, https://doi.org/10.5194/jm-42-257-2023, 2023
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The pollen and dinoflagellate cyst content of 21 surface sediments from the northern Gulf of Mexico is used to test the applicability of three palynological ratios (heterotroph/autotroph, pollen/dinocyst, and pollen/bisaccate ratio) as proxies for marine productivity and distance to the coast/river. Redundancy analysis confirms the suitability of these three ratios, where the H/A ratio can be used as an indicator of primary production, and the P/B ratio best tracks the distance to the coast.
Frida S. Hoem, Adrián López-Quirós, Suzanna van de Lagemaat, Johan Etourneau, Marie-Alexandrine Sicre, Carlota Escutia, Henk Brinkhuis, Francien Peterse, Francesca Sangiorgi, and Peter K. Bijl
Clim. Past, 19, 1931–1949, https://doi.org/10.5194/cp-19-1931-2023, https://doi.org/10.5194/cp-19-1931-2023, 2023
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We present two new sea surface temperature (SST) records in comparison with available SST records to reconstruct South Atlantic paleoceanographic evolution. Our results show a low SST gradient in the Eocene–early Oligocene due to the persistent gyral circulation. A higher SST gradient in the Middle–Late Miocene infers a stronger circumpolar current. The southern South Atlantic was the coldest region in the Southern Ocean and likely the main deep-water formation location in the Middle Miocene.
Suning Hou, Foteini Lamprou, Frida S. Hoem, Mohammad Rizky Nanda Hadju, Francesca Sangiorgi, Francien Peterse, and Peter K. Bijl
Clim. Past, 19, 787–802, https://doi.org/10.5194/cp-19-787-2023, https://doi.org/10.5194/cp-19-787-2023, 2023
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Neogene climate cooling is thought to be accompanied by increased Equator-to-pole temperature gradients, but mid-latitudes are poorly represented. We use biomarkers to reconstruct a 23 Myr continuous sea surface temperature record of the mid-latitude Southern Ocean. We note a profound mid-latitude cooling which narrowed the latitudinal temperature gradient with the northward expansion of subpolar conditions. We surmise that this reflects the strengthening of the ACC and the expansion of sea ice.
Yord W. Yedema, Francesca Sangiorgi, Appy Sluijs, Jaap S. Sinninghe Damsté, and Francien Peterse
Biogeosciences, 20, 663–686, https://doi.org/10.5194/bg-20-663-2023, https://doi.org/10.5194/bg-20-663-2023, 2023
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Terrestrial organic matter (TerrOM) is transported to the ocean by rivers, where its burial can potentially form a long-term carbon sink. This burial is dependent on the type and characteristics of the TerrOM. We used bulk sediment properties, biomarkers, and palynology to identify the dispersal patterns of plant-derived, soil–microbial, and marine OM in the northern Gulf of Mexico and show that plant-derived OM is transported further into the coastal zone than soil and marine-produced TerrOM.
Paweł Działak, Marcin D. Syczewski, Kamil Kornaus, Mirosław Słowakiewicz, Łukasz Zych, and Andrzej Borkowski
Biogeosciences, 19, 4533–4550, https://doi.org/10.5194/bg-19-4533-2022, https://doi.org/10.5194/bg-19-4533-2022, 2022
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Bacteriophages comprise one of the factors that may influence mineralization processes. The number of bacteriophages in the environment usually exceeds the number of bacteria by an order of magnitude. One of the more interesting processes is the formation of framboidal pyrite, and it is not entirely clear what processes determine its formation. Our studies indicate that some bacterial viruses may influence the formation of framboid-like or spherical structures.
Frédérique M. S. A. Kirkels, Hugo J. de Boer, Paulina Concha Hernández, Chris R. T. Martes, Marcel T. J. van der Meer, Sayak Basu, Muhammed O. Usman, and Francien Peterse
Biogeosciences, 19, 4107–4127, https://doi.org/10.5194/bg-19-4107-2022, https://doi.org/10.5194/bg-19-4107-2022, 2022
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The distinct carbon isotopic values of C3 and C4 plants are widely used to reconstruct past hydroclimate, where more C3 plants reflect wetter and C4 plants drier conditions. Here we examine the impact of regional hydroclimatic conditions on plant isotopic values in the Godavari River basin, India. We find that it is crucial to identify regional plant isotopic values and consider drought stress, which introduces a bias in C3 / C4 plant estimates and associated hydroclimate reconstructions.
Frédérique M. S. A. Kirkels, Huub M. Zwart, Muhammed O. Usman, Suning Hou, Camilo Ponton, Liviu Giosan, Timothy I. Eglinton, and Francien Peterse
Biogeosciences, 19, 3979–4010, https://doi.org/10.5194/bg-19-3979-2022, https://doi.org/10.5194/bg-19-3979-2022, 2022
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Soil organic carbon (SOC) that is transferred to the ocean by rivers forms a long-term sink of atmospheric CO2 upon burial on the ocean floor. We here test if certain bacterial membrane lipids can be used to trace SOC through the monsoon-fed Godavari River basin in India. We find that these lipids trace the mobilisation and transport of SOC in the wet season but that these lipids are not transferred far into the sea. This suggests that the burial of SOC on the sea floor is limited here.
Carolien M. H. van der Weijst, Koen J. van der Laan, Francien Peterse, Gert-Jan Reichart, Francesca Sangiorgi, Stefan Schouten, Tjerk J. T. Veenstra, and Appy Sluijs
Clim. Past, 18, 1947–1962, https://doi.org/10.5194/cp-18-1947-2022, https://doi.org/10.5194/cp-18-1947-2022, 2022
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The TEX86 proxy is often used by paleoceanographers to reconstruct past sea-surface temperatures. However, the origin of the TEX86 signal in marine sediments has been debated since the proxy was first proposed. In our paper, we show that TEX86 carries a mixed sea-surface and subsurface temperature signal and should be calibrated accordingly. Using our 15-million-year record, we subsequently show how a TEX86 subsurface temperature record can be used to inform us on past sea-surface temperatures.
Peter K. Bijl, Joost Frieling, Marlow Julius Cramwinckel, Christine Boschman, Appy Sluijs, and Francien Peterse
Clim. Past, 17, 2393–2425, https://doi.org/10.5194/cp-17-2393-2021, https://doi.org/10.5194/cp-17-2393-2021, 2021
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Here, we use the latest insights for GDGT and dinocyst-based paleotemperature and paleoenvironmental reconstructions in late Cretaceous–early Oligocene sediments from ODP Site 1172 (East Tasman Plateau, Australia). We reconstruct strong river runoff during the Paleocene–early Eocene, a progressive decline thereafter with increased wet/dry seasonality in the northward-drifting hinterland. Our critical review leaves the anomalous warmth of the Eocene SW Pacific Ocean unexplained.
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Short summary
This study examined seafloor gas- and/or water-venting craters (pockmarks) to understand the drivers of the microorganisms inhabiting these environments. By combining lipid biomarkers extracted from seabed sediments with genetic analyses, the study found that the microbial community is shaped mainly by nitrogen availability, methane seepage, and porewater freshening. Pockmarks may therefore modulate coastal nutrient cycling and greenhouse gas dynamics, a finding relevant to ecosystem monitoring.
This study examined seafloor gas- and/or water-venting craters (pockmarks) to understand the...
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