Articles | Volume 19, issue 3
https://doi.org/10.5194/bg-19-665-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-19-665-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
03 Feb 2022
Research article |
| 03 Feb 2022
| 03 Feb 2022
Predicting the impact of spatial heterogeneity on microbially mediated nutrient cycling in the subsurface
Swamini Khurana
CORRESPONDING AUTHOR
Department of Environmental Microbiology, Helmholtz Centre for
Environmental Research – UFZ, Leipzig, 04318, Germany
Falk Heße
Department of Computational Hydrosystems, Helmholtz Centre for
Environmental Research – UFZ, Leipzig, 04318, Germany
Institute of Earth and Environmental Science-Geoecology, University Potsdam,
Potsdam, 14476, Germany
Anke Hildebrandt
Department of Computational Hydrosystems, Helmholtz Centre for
Environmental Research – UFZ, Leipzig, 04318, Germany
Institute of Geoscience, Friedrich Schiller University Jena, Jena, 07749, Germany
German Centre for Integrative Biodiversity Research, Leipzig, 04103, Germany
Martin Thullner
Department of Environmental Microbiology, Helmholtz Centre for
Environmental Research – UFZ, Leipzig, 04318, Germany
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Sven Armin Westermann, Anke Hildebrandt, Souhail Bousetta, and Stephan Thober
Biogeosciences, 21, 5277–5303, https://doi.org/10.5194/bg-21-5277-2024, https://doi.org/10.5194/bg-21-5277-2024, 2024
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Plants at the land surface mediate between soil and the atmosphere regarding water and carbon transport. Since plant growth is a dynamic process, models need to consider these dynamics. Two models that predict water and carbon fluxes by considering plant temporal evolution were tested against observational data. Currently, dynamizing plants in these models did not enhance their representativeness, which is caused by a mismatch between implemented physical relations and observable connections.
Laura Dénise Nadolski, Tarek Sebastian El Madany, Jacob Allen Nelson, Arnaud Carrara, Gerardo Moreno, Richard K. F. Nair, Yunpeng Luo, Anke Hildebrandt, Victor Rolo, Markus Reichstein, and Sung-Ching Lee
EGUsphere, https://doi.org/10.5194/egusphere-2024-3190, https://doi.org/10.5194/egusphere-2024-3190, 2024
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Semi-arid ecosystems are crucial for Earth's carbon balance and are sensitive to changes in nitrogen (N) and phosphorus (P) levels. Their carbon dynamics are complex and not fully understood. We studied how long-term nutrient changes affect carbon exchange. In summer, N+P changed plant composition and productivity. In transitional seasons, carbon exchange was less weather-dependent with N. Adding N and N+P are increasing carbon exchange variability, driven by grass greenness.
Sandra Raab, Karel Castro-Morales, Anke Hildebrandt, Martin Heimann, Jorien Elisabeth Vonk, Nikita Zimov, and Mathias Goeckede
Biogeosciences, 21, 2571–2597, https://doi.org/10.5194/bg-21-2571-2024, https://doi.org/10.5194/bg-21-2571-2024, 2024
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Water status is an important control factor on sustainability of Arctic permafrost soils, including production and transport of carbon. We compared a drained permafrost ecosystem with a natural control area, investigating water levels, thaw depths, and lateral water flows. We found that shifts in water levels following drainage affected soil water availability and that lateral transport patterns were of major relevance. Understanding these shifts is crucial for future carbon budget studies.
Sinikka J. Paulus, Rene Orth, Sung-Ching Lee, Anke Hildebrandt, Martin Jung, Jacob A. Nelson, Tarek Sebastian El-Madany, Arnaud Carrara, Gerardo Moreno, Matthias Mauder, Jannis Groh, Alexander Graf, Markus Reichstein, and Mirco Migliavacca
Biogeosciences, 21, 2051–2085, https://doi.org/10.5194/bg-21-2051-2024, https://doi.org/10.5194/bg-21-2051-2024, 2024
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Porous materials are known to reversibly trap water from the air, even at low humidity. However, this behavior is poorly understood for soils. In this analysis, we test whether eddy covariance is able to measure the so-called adsorption of atmospheric water vapor by soils. We find that this flux occurs frequently during dry nights in a Mediterranean ecosystem, while EC detects downwardly directed vapor fluxes. These results can help to map moisture uptake globally.
Gökben Demir, Andrew J. Guswa, Janett Filipzik, Johanna Clara Metzger, Christine Römermann, and Anke Hildebrandt
Hydrol. Earth Syst. Sci., 28, 1441–1461, https://doi.org/10.5194/hess-28-1441-2024, https://doi.org/10.5194/hess-28-1441-2024, 2024
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Experimental evidence is scarce to understand how the spatial variation in below-canopy precipitation affects root water uptake patterns. Here, we conducted field measurements to investigate drivers of root water uptake patterns while accounting for canopy induced heterogeneity in water input. We found that tree species interactions and soil moisture variability, rather than below-canopy precipitation patterns, control root water uptake patterns in a mixed unmanaged forest.
Amir Golparvar, Matthias Kästner, and Martin Thullner
Geosci. Model Dev., 17, 881–898, https://doi.org/10.5194/gmd-17-881-2024, https://doi.org/10.5194/gmd-17-881-2024, 2024
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Coupled reaction transport modelling is an established and beneficial method for studying natural and synthetic porous material, with applications ranging from industrial processes to natural decompositions in terrestrial environments. Up to now, a framework that explicitly considers the porous structure (e.g. from µ-CT images) for modelling the transport of reactive species is missing. We presented a model that overcomes this limitation and represents a novel numerical simulation toolbox.
Falk Heße, Sebastian Müller, and Sabine Attinger
Hydrol. Earth Syst. Sci., 28, 357–374, https://doi.org/10.5194/hess-28-357-2024, https://doi.org/10.5194/hess-28-357-2024, 2024
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In this study, we have presented two different advances for the field of subsurface geostatistics. First, we present data of variogram functions from a variety of different locations around the world. Second, we present a series of geostatistical analyses aimed at examining some of the statistical properties of such variogram functions and their relationship to a number of widely used variogram model functions.
Christine Fischer-Bedtke, Johanna Clara Metzger, Gökben Demir, Thomas Wutzler, and Anke Hildebrandt
Hydrol. Earth Syst. Sci., 27, 2899–2918, https://doi.org/10.5194/hess-27-2899-2023, https://doi.org/10.5194/hess-27-2899-2023, 2023
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Canopies change how rain reaches the soil: some spots receive more and others less water. It has long been debated whether this also leads to locally wetter and drier soil. We checked this using measurements of canopy drip and soil moisture. We found that the increase in soil water content after rain was aligned with canopy drip. Independently, the soil storage reaction was dampened in locations prone to drainage, like hig-macroporosity areas, suggesting that canopy drip enhances bypass flow.
Sinikka Jasmin Paulus, Tarek Sebastian El-Madany, René Orth, Anke Hildebrandt, Thomas Wutzler, Arnaud Carrara, Gerardo Moreno, Oscar Perez-Priego, Olaf Kolle, Markus Reichstein, and Mirco Migliavacca
Hydrol. Earth Syst. Sci., 26, 6263–6287, https://doi.org/10.5194/hess-26-6263-2022, https://doi.org/10.5194/hess-26-6263-2022, 2022
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In this study, we analyze small inputs of water to ecosystems such as fog, dew, and adsorption of vapor. To measure them, we use a scaling system and later test our attribution of different water fluxes to weight changes. We found that they occur frequently during 1 year in a dry summer ecosystem. In each season, a different flux seems dominant, but they all mainly occur during the night. Therefore, they could be important for the biosphere because rain is unevenly distributed over the year.
Friedrich Boeing, Oldrich Rakovec, Rohini Kumar, Luis Samaniego, Martin Schrön, Anke Hildebrandt, Corinna Rebmann, Stephan Thober, Sebastian Müller, Steffen Zacharias, Heye Bogena, Katrin Schneider, Ralf Kiese, Sabine Attinger, and Andreas Marx
Hydrol. Earth Syst. Sci., 26, 5137–5161, https://doi.org/10.5194/hess-26-5137-2022, https://doi.org/10.5194/hess-26-5137-2022, 2022
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In this paper, we deliver an evaluation of the second generation operational German drought monitor (https://www.ufz.de/duerremonitor) with a state-of-the-art compilation of observed soil moisture data from 40 locations and four different measurement methods in Germany. We show that the expressed stakeholder needs for higher resolution drought information at the one-kilometer scale can be met and that the agreement of simulated and observed soil moisture dynamics can be moderately improved.
Ralf Loritz, Maoya Bassiouni, Anke Hildebrandt, Sibylle K. Hassler, and Erwin Zehe
Hydrol. Earth Syst. Sci., 26, 4757–4771, https://doi.org/10.5194/hess-26-4757-2022, https://doi.org/10.5194/hess-26-4757-2022, 2022
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In this study, we combine a deep-learning approach that predicts sap flow with a hydrological model to improve soil moisture and transpiration estimates at the catchment scale. Our results highlight that hybrid-model approaches, combining machine learning with physically based models, are a promising way to improve our ability to make hydrological predictions.
Bahar Bahrami, Anke Hildebrandt, Stephan Thober, Corinna Rebmann, Rico Fischer, Luis Samaniego, Oldrich Rakovec, and Rohini Kumar
Geosci. Model Dev., 15, 6957–6984, https://doi.org/10.5194/gmd-15-6957-2022, https://doi.org/10.5194/gmd-15-6957-2022, 2022
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Leaf area index (LAI) and gross primary productivity (GPP) are crucial components to carbon cycle, and are closely linked to water cycle in many ways. We develop a Parsimonious Canopy Model (PCM) to simulate GPP and LAI at stand scale, and show its applicability over a diverse range of deciduous broad-leaved forest biomes. With its modular structure, the PCM is able to adapt with existing data requirements, and run in either a stand-alone mode or as an interface linked to hydrologic models.
Sebastian Müller, Lennart Schüler, Alraune Zech, and Falk Heße
Geosci. Model Dev., 15, 3161–3182, https://doi.org/10.5194/gmd-15-3161-2022, https://doi.org/10.5194/gmd-15-3161-2022, 2022
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The GSTools package provides a Python-based platform for geoostatistical applications. Salient features of GSTools are its random field generation, its kriging capabilities and its versatile covariance model. It is furthermore integrated with other Python packages, like PyKrige, ogs5py or scikit-gstat, and provides interfaces to meshio and PyVista. Four presented workflows showcase the abilities of GSTools.
Josephin Kroll, Jasper M. C. Denissen, Mirco Migliavacca, Wantong Li, Anke Hildebrandt, and Rene Orth
Biogeosciences, 19, 477–489, https://doi.org/10.5194/bg-19-477-2022, https://doi.org/10.5194/bg-19-477-2022, 2022
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Plant growth relies on having access to energy (solar radiation) and water (soil moisture). This energy and water availability is impacted by weather extremes, like heat waves and droughts, which will occur more frequently in response to climate change. In this context, we analysed global satellite data to detect in which regions extreme plant growth is controlled by energy or water. We find that extreme plant growth is associated with temperature- or soil-moisture-related extremes.
Miao Jing, Rohini Kumar, Falk Heße, Stephan Thober, Oldrich Rakovec, Luis Samaniego, and Sabine Attinger
Hydrol. Earth Syst. Sci., 24, 1511–1526, https://doi.org/10.5194/hess-24-1511-2020, https://doi.org/10.5194/hess-24-1511-2020, 2020
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This study investigates the response of regional groundwater system to the climate change under three global warming levels (1.5, 2, and 3 °C) in a central German basin. A comprehensive uncertainty analysis is also presented. This study indicates that the variability of responses increases with the amount of global warming, which might affect the cost of managing the groundwater system.
Johanna C. Metzger, Jens Schumacher, Markus Lange, and Anke Hildebrandt
Hydrol. Earth Syst. Sci., 23, 4433–4452, https://doi.org/10.5194/hess-23-4433-2019, https://doi.org/10.5194/hess-23-4433-2019, 2019
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Variation in stemflow (rain water running down the stem) enhances the formation of flow hot spots at the forest floor. Investigating drivers based on detailed measurements, we find that forest structure affects stemflow, both for individual trees and small communities. Densely packed forest patches received more stemflow, due to a higher proportion of woody structure and canopy morphology adjustments, which increase the potential for flow path generation connecting crowns and soil.
Miao Jing, Falk Heße, Rohini Kumar, Olaf Kolditz, Thomas Kalbacher, and Sabine Attinger
Hydrol. Earth Syst. Sci., 23, 171–190, https://doi.org/10.5194/hess-23-171-2019, https://doi.org/10.5194/hess-23-171-2019, 2019
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We evaluated the uncertainty propagation from the inputs (forcings) and parameters to the predictions of groundwater travel time distributions (TTDs) using a fully distributed numerical model (mHM-OGS) and the StorAge Selection (SAS) function. Through detailed numerical and analytical investigations, we emphasize the key role of recharge estimation in the reliable predictions of TTDs and the good interpretability of the SAS function.
Yoram Rubin, Ching-Fu Chang, Jiancong Chen, Karina Cucchi, Bradley Harken, Falk Heße, and Heather Savoy
Hydrol. Earth Syst. Sci., 22, 5675–5695, https://doi.org/10.5194/hess-22-5675-2018, https://doi.org/10.5194/hess-22-5675-2018, 2018
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This paper addresses questions related to the adoption of stochastic methods in hydrogeology, looking at factors such as environmental regulations, financial incentives, higher education, and the collective feedback loop involving these factors. We show that stochastic hydrogeology's blind spot is in focusing on risk while ignoring uncertainty, to the detriment of its potential clients. The imbalance between the treatments of risk and uncertainty is shown to be common to multiple disciplines.
Miao Jing, Falk Heße, Rohini Kumar, Wenqing Wang, Thomas Fischer, Marc Walther, Matthias Zink, Alraune Zech, Luis Samaniego, Olaf Kolditz, and Sabine Attinger
Geosci. Model Dev., 11, 1989–2007, https://doi.org/10.5194/gmd-11-1989-2018, https://doi.org/10.5194/gmd-11-1989-2018, 2018
Nicolas Dalla Valle, Karin Potthast, Stefanie Meyer, Beate Michalzik, Anke Hildebrandt, and Thomas Wutzler
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2017-336, https://doi.org/10.5194/hess-2017-336, 2017
Manuscript not accepted for further review
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Dual permeability models are an important tool to simulate water movement in soils and can be used to assess the risk of groundwater contamination by pesticides or the risk of flooding after strong precipitation events. However, their application is often hampered by the large amount of data they require. We developed a method to run this kind of models based on mostly just soil water content measurements, which will hopefully increase their usage and improve environmental risk assessment.
Falk Heße, Matthias Zink, Rohini Kumar, Luis Samaniego, and Sabine Attinger
Hydrol. Earth Syst. Sci., 21, 549–570, https://doi.org/10.5194/hess-21-549-2017, https://doi.org/10.5194/hess-21-549-2017, 2017
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Travel-time distributions are a comprehensive tool for the characterization of hydrological systems. In our study, we used data that were simulated by virtue of a well-established hydrological model. This gave us a very large yet realistic dataset, both in time and space, from which we could infer the relative impact of different factors on travel-time behavior. These were, in particular, meteorological (precipitation), land surface (land cover, leaf-area index) and subsurface (soil) properties.
Anke Hildebrandt, Axel Kleidon, and Marcel Bechmann
Hydrol. Earth Syst. Sci., 20, 3441–3454, https://doi.org/10.5194/hess-20-3441-2016, https://doi.org/10.5194/hess-20-3441-2016, 2016
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This theoretical paper describes the energy fluxes and dissipation along the flow paths involved in root water uptake, an approach that is rarely taken. We show that this provides useful additional insights for understanding the biotic and abiotic impediments to root water uptake. This approach shall be applied to explore efficient water uptake strategies and help locate the limiting processes in the complex soil–plant–atmosphere system.
M. Guderle and A. Hildebrandt
Hydrol. Earth Syst. Sci., 19, 409–425, https://doi.org/10.5194/hess-19-409-2015, https://doi.org/10.5194/hess-19-409-2015, 2015
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This paper is the result of a numerical study to test the application of water balance methods for estimating evapotranspiration and water extraction profiles based on measured soil water content data. The advantage of the tested methods is that they do not rely on a priori information of any root distribution parameters. Our research shows the potential of water balance methods for derivation of water extraction profiles, but their application may be challenging in realistic conditions.
M. Bechmann, C. Schneider, A. Carminati, D. Vetterlein, S. Attinger, and A. Hildebrandt
Hydrol. Earth Syst. Sci., 18, 4189–4206, https://doi.org/10.5194/hess-18-4189-2014, https://doi.org/10.5194/hess-18-4189-2014, 2014
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Conversion of tropical forests to smallholder rubber and oil palm plantations impacts nutrient leaching losses and nutrient retention efficiency in highly weathered soils
Molecular characterization of organic matter mobilized from Bangladeshi aquifer sediment: tracking carbon compositional change during microbial utilization
Tracking the direct impact of rainfall on groundwater at Mt. Fuji by multiple analyses including microbial DNA
Functional diversity of microbial communities in pristine aquifers inferred by PLFA- and sequencing-based approaches
Biogeochemical constraints on the origin of methane in an alluvial aquifer: evidence for the upward migration of methane from underlying coal measures
Ash leachates from some recent eruptions of Mount Etna (Italy) and Popocatépetl (Mexico) volcanoes and their impact on amphibian living freshwater organisms
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Biogeosciences, 21, 2571–2597, https://doi.org/10.5194/bg-21-2571-2024, https://doi.org/10.5194/bg-21-2571-2024, 2024
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Water status is an important control factor on sustainability of Arctic permafrost soils, including production and transport of carbon. We compared a drained permafrost ecosystem with a natural control area, investigating water levels, thaw depths, and lateral water flows. We found that shifts in water levels following drainage affected soil water availability and that lateral transport patterns were of major relevance. Understanding these shifts is crucial for future carbon budget studies.
Syahrul Kurniawan, Marife D. Corre, Amanda L. Matson, Hubert Schulte-Bisping, Sri Rahayu Utami, Oliver van Straaten, and Edzo Veldkamp
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Lara E. Pracht, Malak M. Tfaily, Robert J. Ardissono, and Rebecca B. Neumann
Biogeosciences, 15, 1733–1747, https://doi.org/10.5194/bg-15-1733-2018, https://doi.org/10.5194/bg-15-1733-2018, 2018
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Ayumi Sugiyama, Suguru Masuda, Kazuyo Nagaosa, Maki Tsujimura, and Kenji Kato
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Charlotte P. Iverach, Sabrina Beckmann, Dioni I. Cendón, Mike Manefield, and Bryce F. J. Kelly
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M. D'Addabbo, R. Sulpizio, M. Guidi, G. Capitani, P. Mantecca, and G. Zanchetta
Biogeosciences, 12, 7087–7106, https://doi.org/10.5194/bg-12-7087-2015, https://doi.org/10.5194/bg-12-7087-2015, 2015
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Leaching experiments were carried out on fresh ash samples from the 2012 Popocatépetl, and 2011/12 Etna eruptions, in order to investigate the release of compounds in water. Results were discussed in the light of changing pH and release of compounds for the different leachates. They were used for toxicity experiments on living biota (Xenopus laevis). They are mildly toxic, and no significant differences exist between the toxic profiles of the two leachates.
W. Eschenbach, R. Well, and W. Walther
Biogeosciences, 12, 2327–2346, https://doi.org/10.5194/bg-12-2327-2015, https://doi.org/10.5194/bg-12-2327-2015, 2015
J. F. Dean, J. A. Webb, G. E. Jacobsen, R. Chisari, and P. E. Dresel
Biogeosciences, 11, 4099–4114, https://doi.org/10.5194/bg-11-4099-2014, https://doi.org/10.5194/bg-11-4099-2014, 2014
M. Dietzel, A. Leis, R. Abdalla, J. Savarino, S. Morin, M. E. Böttcher, and S. Köhler
Biogeosciences, 11, 3149–3161, https://doi.org/10.5194/bg-11-3149-2014, https://doi.org/10.5194/bg-11-3149-2014, 2014
T. G. Troxler, C. Coronado-Molina, D. N. Rondeau, S. Krupa, S. Newman, M. Manna, R. M. Price, and F. H. Sklar
Biogeosciences, 11, 899–914, https://doi.org/10.5194/bg-11-899-2014, https://doi.org/10.5194/bg-11-899-2014, 2014
W. Eschenbach and R. Well
Biogeosciences, 10, 1013–1035, https://doi.org/10.5194/bg-10-1013-2013, https://doi.org/10.5194/bg-10-1013-2013, 2013
H. J. M. van Grinsven, H. F. M. ten Berge, T. Dalgaard, B. Fraters, P. Durand, A. Hart, G. Hofman, B. H. Jacobsen, S. T. J. Lalor, J. P. Lesschen, B. Osterburg, K. G. Richards, A.-K. Techen, F. Vertès, J. Webb, and W. J. Willems
Biogeosciences, 9, 5143–5160, https://doi.org/10.5194/bg-9-5143-2012, https://doi.org/10.5194/bg-9-5143-2012, 2012
B. Hansen, T. Dalgaard, L. Thorling, B. Sørensen, and M. Erlandsen
Biogeosciences, 9, 3277–3286, https://doi.org/10.5194/bg-9-3277-2012, https://doi.org/10.5194/bg-9-3277-2012, 2012
J. B. Heffernan, A. R. Albertin, M. L. Fork, B. G. Katz, and M. J. Cohen
Biogeosciences, 9, 1671–1690, https://doi.org/10.5194/bg-9-1671-2012, https://doi.org/10.5194/bg-9-1671-2012, 2012
C. Fallico, S. Troisi, A. Molinari, and M. F. Rivera
Biogeosciences, 7, 2545–2556, https://doi.org/10.5194/bg-7-2545-2010, https://doi.org/10.5194/bg-7-2545-2010, 2010
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Short summary
In this study, we concluded that the residence times of solutes and the Damköhler number (Da) of the biogeochemical reactions in the domain are governing factors for evaluating the impact of spatial heterogeneity of the domain on chemical (such as carbon and nitrogen compounds) removal. We thus proposed a relationship to scale this impact governed by Da. This relationship may be applied in larger domains, thereby resulting in more accurate modelling outcomes of nutrient removal in groundwater.
In this study, we concluded that the residence times of solutes and the Damköhler number (Da) of...
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