Articles | Volume 14, issue 6
https://doi.org/10.5194/bg-14-1419-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-14-1419-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Observing and modelling phytoplankton community structure in the North Sea
David A. Ford
CORRESPONDING AUTHOR
Met Office, FitzRoy Road, Exeter, EX1 3PB, UK
Johan van der Molen
Centre for Environment, Fisheries and Aquaculture Science (Cefas), Pakefield Road, Lowestoft, NR33 0HT, UK
Royal Netherlands Institute for Sea Research (NIOZ), Department of Coastal Systems and Utrecht University, P.O. Box 59, 1790 AB Den Burg, Texel, the Netherlands
Kieran Hyder
Centre for Environment, Fisheries and Aquaculture Science (Cefas), Pakefield Road, Lowestoft, NR33 0HT, UK
John Bacon
Centre for Environment, Fisheries and Aquaculture Science (Cefas), Pakefield Road, Lowestoft, NR33 0HT, UK
Rosa Barciela
Met Office, FitzRoy Road, Exeter, EX1 3PB, UK
Veronique Creach
Centre for Environment, Fisheries and Aquaculture Science (Cefas), Pakefield Road, Lowestoft, NR33 0HT, UK
Robert McEwan
Met Office, FitzRoy Road, Exeter, EX1 3PB, UK
Piet Ruardij
Royal Netherlands Institute for Sea Research (NIOZ), Department of Coastal Systems and Utrecht University, P.O. Box 59, 1790 AB Den Burg, Texel, the Netherlands
Rodney Forster
Centre for Environment, Fisheries and Aquaculture Science (Cefas), Pakefield Road, Lowestoft, NR33 0HT, UK
University of Hull, Cottingham Road, Hull, HU6 7RX, UK
Related authors
Davi Mignac, Jennifer Waters, Daniel J. Lea, Matthew J. Martin, James While, Anthony T. Weaver, Arthur Vidard, Catherine Guiavarc’h, Dave Storkey, David Ford, Edward W. Blockley, Jonathan Baker, Keith Haines, Martin R. Price, Michael J. Bell, and Richard Renshaw
EGUsphere, https://doi.org/10.5194/egusphere-2024-3143, https://doi.org/10.5194/egusphere-2024-3143, 2024
Short summary
Short summary
We describe major improvements of the Met Office's global ocean-sea ice forecasting system. The models and the way observations are used to improve the forecasts were changed, which led to a significant error reduction of 1-day forecasts. The new system performance in past conditions, where sub-surface observations are scarce, was improved with more consistent ocean heat content estimates. The new system will be of better use for climate studies and will provide improved forecasts for end users.
Jozef Skakala, David Ford, Keith Haines, Amos Lawless, Matthew Martin, Philip Browne, Marcin Chrust, Stefano Ciavatta, Alison Fowler, Daniel Lea, Matthew Palmer, Andrea Rochner, Jennifer Waters, Hao Zuo, Mike Bell, Davi Carneiro, Yumeng Chen, Susan Kay, Dale Partridge, Martin Price, Richard Renshaw, Georgy Shapiro, and James While
EGUsphere, https://doi.org/10.5194/egusphere-2024-1737, https://doi.org/10.5194/egusphere-2024-1737, 2024
Short summary
Short summary
In this paper we review marine data assimilation (MDA) in the UK, its stakeholders, needs, past and present developments in different areas of UK MDA, and offer a vision for their longer future. The specific areas covered are ocean physics and sea ice, marine biogeochemistry, coupled MDA, MDA informing observing network design and MDA theory. We also discuss future vision for MDA resources: observations, software, hardware and people skills.
Marion Mittermaier, Rachel North, Jan Maksymczuk, Christine Pequignet, and David Ford
Ocean Sci., 17, 1527–1543, https://doi.org/10.5194/os-17-1527-2021, https://doi.org/10.5194/os-17-1527-2021, 2021
Short summary
Short summary
Regions of enhanced chlorophyll-a concentrations can be identified by applying a threshold to the concentration value to a forecast and observed field (or analysis). These regions can then be treated and analysed as features using diagnostic techniques to consider of the evolution of the chlorophyll-a blooms in space and time. This allows us to understand whether the biogeochemistry in the model has any skill in predicting these blooms, their location, intensity, onset, duration and demise.
David Ford
Biogeosciences, 18, 509–534, https://doi.org/10.5194/bg-18-509-2021, https://doi.org/10.5194/bg-18-509-2021, 2021
Short summary
Short summary
Biogeochemical-Argo floats are starting to routinely measure ocean chlorophyll, nutrients, oxygen, and pH. This study generated synthetic observations representing two potential Biogeochemical-Argo observing system designs and created a data assimilation scheme to combine them with an ocean model. The proposed system of 1000 floats brought clear benefits to model results, with additional floats giving further benefit. Existing satellite ocean colour observations gave complementary information.
David Andrew Ford
Ocean Sci., 16, 875–893, https://doi.org/10.5194/os-16-875-2020, https://doi.org/10.5194/os-16-875-2020, 2020
Short summary
Short summary
Satellite observations of the ocean were combined with a numerical model to create simulations of the ocean state between 1998 and 2010. Relationships between physical and biogeochemical quantities were assessed to investigate whether observations of different variables are consistent in their representation of the Earth system. Good consistency was found. The results also highlighted ways in which the model could be improved and the respective impacts of using different observations.
Davi Mignac, Jennifer Waters, Daniel J. Lea, Matthew J. Martin, James While, Anthony T. Weaver, Arthur Vidard, Catherine Guiavarc’h, Dave Storkey, David Ford, Edward W. Blockley, Jonathan Baker, Keith Haines, Martin R. Price, Michael J. Bell, and Richard Renshaw
EGUsphere, https://doi.org/10.5194/egusphere-2024-3143, https://doi.org/10.5194/egusphere-2024-3143, 2024
Short summary
Short summary
We describe major improvements of the Met Office's global ocean-sea ice forecasting system. The models and the way observations are used to improve the forecasts were changed, which led to a significant error reduction of 1-day forecasts. The new system performance in past conditions, where sub-surface observations are scarce, was improved with more consistent ocean heat content estimates. The new system will be of better use for climate studies and will provide improved forecasts for end users.
Jozef Skakala, David Ford, Keith Haines, Amos Lawless, Matthew Martin, Philip Browne, Marcin Chrust, Stefano Ciavatta, Alison Fowler, Daniel Lea, Matthew Palmer, Andrea Rochner, Jennifer Waters, Hao Zuo, Mike Bell, Davi Carneiro, Yumeng Chen, Susan Kay, Dale Partridge, Martin Price, Richard Renshaw, Georgy Shapiro, and James While
EGUsphere, https://doi.org/10.5194/egusphere-2024-1737, https://doi.org/10.5194/egusphere-2024-1737, 2024
Short summary
Short summary
In this paper we review marine data assimilation (MDA) in the UK, its stakeholders, needs, past and present developments in different areas of UK MDA, and offer a vision for their longer future. The specific areas covered are ocean physics and sea ice, marine biogeochemistry, coupled MDA, MDA informing observing network design and MDA theory. We also discuss future vision for MDA resources: observations, software, hardware and people skills.
Johan van der Molen, Sjoerd Groeskamp, and Leo R. M. Maas
Ocean Sci., 18, 1805–1816, https://doi.org/10.5194/os-18-1805-2022, https://doi.org/10.5194/os-18-1805-2022, 2022
Short summary
Short summary
We studied the long-term mean flow through the Marsdiep tidal inlet in the Dutch Wadden Sea. We found that this flow, which is important for sediment, salt and nutrient balances, is reversing from net outflow to inflow. We hypothesise changes in tides in the North Sea caused this, due to increased stratification in response to global warming. Hence, we expect permanent inflow conditions within 1 decade, with potential effects on the sediment balance and the ecosystem of this World Heritage Site.
Marion Mittermaier, Rachel North, Jan Maksymczuk, Christine Pequignet, and David Ford
Ocean Sci., 17, 1527–1543, https://doi.org/10.5194/os-17-1527-2021, https://doi.org/10.5194/os-17-1527-2021, 2021
Short summary
Short summary
Regions of enhanced chlorophyll-a concentrations can be identified by applying a threshold to the concentration value to a forecast and observed field (or analysis). These regions can then be treated and analysed as features using diagnostic techniques to consider of the evolution of the chlorophyll-a blooms in space and time. This allows us to understand whether the biogeochemistry in the model has any skill in predicting these blooms, their location, intensity, onset, duration and demise.
David Ford
Biogeosciences, 18, 509–534, https://doi.org/10.5194/bg-18-509-2021, https://doi.org/10.5194/bg-18-509-2021, 2021
Short summary
Short summary
Biogeochemical-Argo floats are starting to routinely measure ocean chlorophyll, nutrients, oxygen, and pH. This study generated synthetic observations representing two potential Biogeochemical-Argo observing system designs and created a data assimilation scheme to combine them with an ocean model. The proposed system of 1000 floats brought clear benefits to model results, with additional floats giving further benefit. Existing satellite ocean colour observations gave complementary information.
David Andrew Ford
Ocean Sci., 16, 875–893, https://doi.org/10.5194/os-16-875-2020, https://doi.org/10.5194/os-16-875-2020, 2020
Short summary
Short summary
Satellite observations of the ocean were combined with a numerical model to create simulations of the ocean state between 1998 and 2010. Relationships between physical and biogeochemical quantities were assessed to investigate whether observations of different variables are consistent in their representation of the Earth system. Good consistency was found. The results also highlighted ways in which the model could be improved and the respective impacts of using different observations.
Suzanne J. Painting, Kate A. Collingridge, Dominique Durand, Antoine Grémare, Veronique Créach, Christos Arvanitidis, and Guillaume Bernard
Ocean Sci., 16, 235–252, https://doi.org/10.5194/os-16-235-2020, https://doi.org/10.5194/os-16-235-2020, 2020
Short summary
Short summary
We carried out a literature review and an opinion poll of the JERICO-NEXT community to identify the main environmental threats in European coastal areas and gaps in monitoring. The need for improved monitoring was highlighted, e.g. through improved design and monitoring effort and better links with new technologies. The findings underpin the JERICO-NEXT science strategy to integrate linkages between physical, chemical, and biological parameters to address scientific and policy needs.
Thodoris Karpouzoglou, Brigitte Vlaswinkel, and Johan van der Molen
Ocean Sci., 16, 195–208, https://doi.org/10.5194/os-16-195-2020, https://doi.org/10.5194/os-16-195-2020, 2020
Short summary
Short summary
Sustainable operation of floating solar platforms requires knowledge of effects on the marine ecosystem. We modelled effects on water flow and algae growth in a coastal sea. Algae growth was reduced depending on the local currents and on the density of coverage with platforms. The model represented platforms distributed evenly over areas of hundreds of square kilometres. For smaller-scale cases, effects may be smaller, and for more detailed understanding, three-dimensional models are needed.
Jonathan Tinker, Justin Krijnen, Richard Wood, Rosa Barciela, and Stephen R. Dye
Ocean Sci., 14, 887–909, https://doi.org/10.5194/os-14-887-2018, https://doi.org/10.5194/os-14-887-2018, 2018
Short summary
Short summary
We consider the prospects for seasonal forecasts for the North-west European Shelf (NWS) seas. The recent maturation of global seasonal forecast systems and NWS marine reanalyses provide a basis for such forecasts. We assess the potential of three possible approaches: direct use of global forecast fields and empirical and dynamical downscaling. We conclude that there is potential for NWS seasonal forecasts and as an example show a skillful prototype SST forecast for the English Channel.
Johan van der Molen, Piet Ruardij, Karen Mooney, Philip Kerrison, Nessa E. O'Connor, Emma Gorman, Klaas Timmermans, Serena Wright, Maeve Kelly, Adam D. Hughes, and Elisa Capuzzo
Biogeosciences, 15, 1123–1147, https://doi.org/10.5194/bg-15-1123-2018, https://doi.org/10.5194/bg-15-1123-2018, 2018
Short summary
Short summary
Macroalgae farming may provide biofuel. Modelled macroalgae production is given for four sites in UK and Dutch waters. Macroalgae growth depended on nutrient concentrations and light levels. Macroalgae carbohydrate content, important for biofuel use, was lower for high nutrient concentrations. The hypothetical large-scale farm off the UK north Norfolk coast gave high, stable yields of macroalgae from year to year with substantial carbohydrate content.
Johan van der Molen, Piet Ruardij, and Naomi Greenwood
Biogeosciences, 13, 2593–2609, https://doi.org/10.5194/bg-13-2593-2016, https://doi.org/10.5194/bg-13-2593-2016, 2016
Short summary
Short summary
The potential large-scale (> 100 km) effects of marine renewable tidal energy generation in the Pentland Firth were studied using a 3-D hydrodynamics–biogeochemistry model. A realistic 800 MW scenario suggested minor effects on tides and biogeochemistry. A massive-expansion 8 GW scenario suggested effects over hundreds of kilometres away with changes of up to 10 % in tidal and ecosystem variables, the latter through clearer waters and increased primary production with associated increases in fauna.
Momme Butenschön, James Clark, John N. Aldridge, Julian Icarus Allen, Yuri Artioli, Jeremy Blackford, Jorn Bruggeman, Pierre Cazenave, Stefano Ciavatta, Susan Kay, Gennadi Lessin, Sonja van Leeuwen, Johan van der Molen, Lee de Mora, Luca Polimene, Sevrine Sailley, Nicholas Stephens, and Ricardo Torres
Geosci. Model Dev., 9, 1293–1339, https://doi.org/10.5194/gmd-9-1293-2016, https://doi.org/10.5194/gmd-9-1293-2016, 2016
Short summary
Short summary
ERSEM 15.06 is a model for marine biogeochemistry and the lower trophic levels of the marine food web. It comprises a pelagic and benthic sub-model including the microbial food web and the major biogeochemical cycles of carbon, nitrogen, phosphorus, silicate, and iron using dynamic stochiometry. Further features include modules for the carbonate system and calcification. We present full mathematical descriptions of all elements along with examples at various scales up to 3-D applications.
M. Thyssen, S. Alvain, A. Lefèbvre, D. Dessailly, M. Rijkeboer, N. Guiselin, V. Creach, and L.-F. Artigas
Biogeosciences, 12, 4051–4066, https://doi.org/10.5194/bg-12-4051-2015, https://doi.org/10.5194/bg-12-4051-2015, 2015
Short summary
Short summary
Phytoplankton community structure at a high spatial resolution (<3km) was studied in the North Sea during a cruise in May 2011. A first comparison with PHYSAT reflectance anomalies enables the extrapolation of the community structure rather than a dominant type at the North Sea scale and was interpreted with its hydrological characteristics. This will seriously improve our understanding of the influence of community structure on biogeochemical processes at the daily and basin scales.
J. van der Molen, J. van Beek, S. Augustine, L. Vansteenbrugge, L. van Walraven, V. Langenberg, H. W. van der Veer, K. Hostens, S. Pitois, and J. Robbens
Ocean Sci., 11, 405–424, https://doi.org/10.5194/os-11-405-2015, https://doi.org/10.5194/os-11-405-2015, 2015
Short summary
Short summary
The reproduction, survival, and transport of the comb jelly Mnemiopsis leidyi was studied with three models in the Scheldt estuaries and the southern North Sea. The results suggest that (a) the estuaries can retain an overwintering population and seed offshore populations; (b) M. leidyi can survive in the North Sea, and be transported between coastal inlets; and (c) M. leidyi cannot reproduce well in the North Sea, but this might change with global warming. The models need further improvement.
L. Kwiatkowski, A. Yool, J. I. Allen, T. R. Anderson, R. Barciela, E. T. Buitenhuis, M. Butenschön, C. Enright, P. R. Halloran, C. Le Quéré, L. de Mora, M.-F. Racault, B. Sinha, I. J. Totterdell, and P. M. Cox
Biogeosciences, 11, 7291–7304, https://doi.org/10.5194/bg-11-7291-2014, https://doi.org/10.5194/bg-11-7291-2014, 2014
M. C. H. Tiessen, L. Fernard, T. Gerkema, J. van der Molen, P. Ruardij, and H. W. van der Veer
Ocean Sci., 10, 357–376, https://doi.org/10.5194/os-10-357-2014, https://doi.org/10.5194/os-10-357-2014, 2014
Related subject area
Biogeochemistry: Coastal Ocean
Reviews and syntheses: Biological indicators of low-oxygen stress in marine water-breathing animals
Temperature-enhanced effects of iron on Southern Ocean phytoplankton
Riverine nutrient impact on global ocean nitrogen cycle feedbacks and marine primary production in an Earth system model
The Northeast Greenland Shelf as a potential late-summer CO2 source to the atmosphere
Technical note: Ocean Alkalinity Enhancement Pelagic Impact Intercomparison Project (OAEPIIP)
Estimates of carbon sequestration potential in an expanding Arctic fjord (Hornsund, Svalbard) affected by dark plumes of glacial meltwater
An assessment of ocean alkalinity enhancement using aqueous hydroxides: kinetics, efficiency, and precipitation thresholds
High metabolic zinc demand within native Amundsen and Ross Sea phytoplankton communities determined by stable isotope uptake rate measurements
Dissolved nitric oxide in the lower Elbe Estuary and the Port of Hamburg area
Variable contribution of wastewater treatment plant effluents to downstream nitrous oxide concentrations and emissions
Responses of microbial metabolic rates to non-equilibrated silicate vs calcium-based ocean alkalinity enhancement
Distribution of nutrients and dissolved organic matter in a eutrophic equatorial estuary: the Johor River and the East Johor Strait
Investigating the effect of silicate- and calcium-based ocean alkalinity enhancement on diatom silicification
Ocean alkalinity enhancement using sodium carbonate salts does not lead to measurable changes in Fe dynamics in a mesocosm experiment
Quantification and mitigation of bottom-trawling impacts on sedimentary organic carbon stocks in the North Sea
Influence of ocean alkalinity enhancement with olivine or steel slag on a coastal plankton community in Tasmania
Multi-model comparison of trends and controls of near-bed oxygen concentration on the northwest European continental shelf under climate change
Picoplanktonic methane production in eutrophic surface waters
Vertical mixing alleviates autumnal oxygen deficiency in the central North Sea
Hypoxia also occurs in small highly turbid estuaries: the example of the Charente (Bay of Biscay)
Assessing the impacts of simulated Ocean Alkalinity Enhancement on viability and growth of near-shore species of phytoplankton
Seasonality and response of ocean acidification and hypoxia to major environmental anomalies in the southern Salish Sea, North America (2014–2018)
The influence of zooplankton and oxygen on the particulate organic carbon flux in the Benguela Upwelling System
Oceanographic processes driving low-oxygen conditions inside Patagonian fjords
Above- and belowground plant mercury dynamics in a salt marsh estuary in Massachusetts, USA
Variability and drivers of carbonate chemistry at shellfish aquaculture sites in the Salish Sea, British Columbia
Unusual Hemiaulus bloom influences ocean productivity in Northeastern US Shelf waters
Insights into carbonate environmental conditions in the Chukchi Sea
UAV approaches for improved mapping of vegetation cover and estimation of carbon storage of small saltmarshes: examples from Loch Fleet, northeast Scotland
Iron “ore” nothing: benthic iron fluxes from the oxygen-deficient Santa Barbara Basin enhance phytoplankton productivity in surface waters
Marine anoxia initiates giant sulfur-oxidizing bacterial mat proliferation and associated changes in benthic nitrogen, sulfur, and iron cycling in the Santa Barbara Basin, California Borderland
Uncertainty in the evolution of northwestern North Atlantic circulation leads to diverging biogeochemical projections
The additionality problem of ocean alkalinity enhancement
Short-term variation in pH in seawaters around coastal areas of Japan: characteristics and forcings
Revisiting the applicability and constraints of molybdenum- and uranium-based paleo redox proxies: comparing two contrasting sill fjords
Influence of a small submarine canyon on biogenic matter export flux in the lower St. Lawrence Estuary, eastern Canada
Single-celled bioturbators: benthic foraminifera mediate oxygen penetration and prokaryotic diversity in intertidal sediment
Assessing impacts of coastal warming, acidification, and deoxygenation on Pacific oyster (Crassostrea gigas) farming: a case study in the Hinase area, Okayama Prefecture, and Shizugawa Bay, Miyagi Prefecture, Japan
Multiple nitrogen sources for primary production inferred from δ13C and δ15N in the southern Sea of Japan
Influence of manganese cycling on alkalinity in the redox stratified water column of Chesapeake Bay
Estuarine flocculation dynamics of organic carbon and metals from boreal acid sulfate soils
Drivers of particle sinking velocities in the Peruvian upwelling system
Impacts and uncertainties of climate-induced changes in watershed inputs on estuarine hypoxia
Considerations for hypothetical carbon dioxide removal via alkalinity addition in the Amazon River watershed
High metabolism and periodic hypoxia associated with drifting macrophyte detritus in the shallow subtidal Baltic Sea
Production and accumulation of reef framework by calcifying corals and macroalgae on a remote Indian Ocean cay
Zooplankton community succession and trophic links during a mesocosm experiment in the coastal upwelling off Callao Bay (Peru)
Temporal and spatial evolution of bottom-water hypoxia in the St Lawrence estuarine system
Significant nutrient consumption in the dark subsurface layer during a diatom bloom: a case study on Funka Bay, Hokkaido, Japan
Contrasts in dissolved, particulate, and sedimentary organic carbon from the Kolyma River to the East Siberian Shelf
Michael R. Roman, Andrew H. Altieri, Denise Breitburg, Erica M. Ferrer, Natalya D. Gallo, Shin-ichi Ito, Karin Limburg, Kenneth Rose, Moriaki Yasuhara, and Lisa A. Levin
Biogeosciences, 21, 4975–5004, https://doi.org/10.5194/bg-21-4975-2024, https://doi.org/10.5194/bg-21-4975-2024, 2024
Short summary
Short summary
Oxygen-depleted ocean waters have increased worldwide. In order to improve our understanding of the impacts of this oxygen loss on marine life it is essential that we develop reliable indicators that track the negative impacts of low oxygen. We review various indicators of low-oxygen stress for marine animals including their use, research needs, and application to confront the challenges of ocean oxygen loss.
Charlotte Eich, Mathijs van Manen, J. Scott P. McCain, Loay J. Jabre, Willem H. van de Poll, Jinyoung Jung, Sven B. E. H. Pont, Hung-An Tian, Indah Ardiningsih, Gert-Jan Reichart, Erin M. Bertrand, Corina P. D. Brussaard, and Rob Middag
Biogeosciences, 21, 4637–4663, https://doi.org/10.5194/bg-21-4637-2024, https://doi.org/10.5194/bg-21-4637-2024, 2024
Short summary
Short summary
Phytoplankton growth in the Southern Ocean (SO) is often limited by low iron (Fe) concentrations. Sea surface warming impacts Fe availability and can affect phytoplankton growth. We used shipboard Fe clean incubations to test how changes in Fe and temperature affect SO phytoplankton. Their abundances usually increased with Fe addition and temperature increase, with Fe being the major factor. These findings imply potential shifts in ecosystem structure, impacting food webs and elemental cycling.
Miriam Tivig, David P. Keller, and Andreas Oschlies
Biogeosciences, 21, 4469–4493, https://doi.org/10.5194/bg-21-4469-2024, https://doi.org/10.5194/bg-21-4469-2024, 2024
Short summary
Short summary
Marine biological production is highly dependent on the availability of nitrogen and phosphorus. Rivers are the main source of phosphorus to the oceans but poorly represented in global model oceans. We include dissolved nitrogen and phosphorus from river export in a global model ocean and find that the addition of riverine phosphorus affects marine biology on millennial timescales more than riverine nitrogen alone. Globally, riverine phosphorus input increases primary production rates.
Esdoorn Willcox, Marcos Lemes, Thomas Juul-Pedersen, Mikael Kristian Sejr, Johnna Marchiano Holding, and Søren Rysgaard
Biogeosciences, 21, 4037–4050, https://doi.org/10.5194/bg-21-4037-2024, https://doi.org/10.5194/bg-21-4037-2024, 2024
Short summary
Short summary
In this work, we measured the chemistry of seawater from samples obtained from different depths and locations off the east coast of the Northeast Greenland National Park to determine what is influencing concentrations of dissolved CO2. Historically, the region has always been thought to take up CO2 from the atmosphere, but we show that it is possible for the region to become a source in late summer. We discuss the variables that may be related to such changes.
Lennart Thomas Bach, Aaron James Ferderer, Julie LaRoche, and Kai Georg Schulz
Biogeosciences, 21, 3665–3676, https://doi.org/10.5194/bg-21-3665-2024, https://doi.org/10.5194/bg-21-3665-2024, 2024
Short summary
Short summary
Ocean alkalinity enhancement (OAE) is an emerging marine CO2 removal method, but its environmental effects are insufficiently understood. The OAE Pelagic Impact Intercomparison Project (OAEPIIP) provides funding for a standardized and globally replicated microcosm experiment to study the effects of OAE on plankton communities. Here, we provide a detailed manual for the OAEPIIP experiment. We expect OAEPIIP to help build scientific consensus on the effects of OAE on plankton.
Marlena Szeligowska, Déborah Benkort, Anna Przyborska, Mateusz Moskalik, Bernabé Moreno, Emilia Trudnowska, and Katarzyna Błachowiak-Samołyk
Biogeosciences, 21, 3617–3639, https://doi.org/10.5194/bg-21-3617-2024, https://doi.org/10.5194/bg-21-3617-2024, 2024
Short summary
Short summary
The European Arctic is experiencing rapid regional warming, causing glaciers that terminate in the sea to retreat onto land. Due to this process, the area of a well-studied fjord, Hornsund, has increased by around 100 km2 (40%) since 1976. Combining satellite and in situ data with a mathematical model, we estimated that, despite some negative consequences of glacial meltwater release, such emerging coastal waters could mitigate climate change by increasing carbon uptake and storage by sediments.
Mallory C. Ringham, Nathan Hirtle, Cody Shaw, Xi Lu, Julian Herndon, Brendan R. Carter, and Matthew D. Eisaman
Biogeosciences, 21, 3551–3570, https://doi.org/10.5194/bg-21-3551-2024, https://doi.org/10.5194/bg-21-3551-2024, 2024
Short summary
Short summary
Ocean alkalinity enhancement leverages the large surface area and carbon storage capacity of the oceans to store atmospheric CO2 as dissolved bicarbonate. We monitored CO2 uptake in seawater treated with NaOH to establish operational boundaries for carbon removal experiments. Results show that CO2 equilibration occurred on the order of weeks to months, was consistent with values expected from equilibration calculations, and was limited by mineral precipitation at high pH and CaCO3 saturation.
Riss M. Kell, Rebecca J. Chmiel, Deepa Rao, Dawn M. Moran, Matthew R. McIlvin, Tristan J. Horner, Nicole L. Schanke, Robert B. Dunbar, Giacomo R. DiTullio, and Mak A. Saito
EGUsphere, https://doi.org/10.5194/egusphere-2024-2085, https://doi.org/10.5194/egusphere-2024-2085, 2024
Short summary
Short summary
Southern Ocean phytoplankton play a pivotal role in regulating the uptake and sequestration of carbon dioxide from the atmosphere. This study describes a new stable zinc isotope uptake rate measurement method used to quantify zinc and cadmium uptake rates within native Southern Ocean phytoplankton communities. This data can better inform biogeochemical model predictions of primary production, carbon export, and atmospheric carbon dioxide flux.
Riel Carlo O. Ingeniero, Gesa Schulz, and Hermann W. Bange
Biogeosciences, 21, 3425–3440, https://doi.org/10.5194/bg-21-3425-2024, https://doi.org/10.5194/bg-21-3425-2024, 2024
Short summary
Short summary
Our research is the first to measure dissolved NO concentrations in temperate estuarine waters, providing insights into its distribution under varying conditions and enhancing our understanding of its production processes. Dissolved NO was supersaturated in the Elbe Estuary, indicating that it is a source of atmospheric NO. The observed distribution of dissolved NO most likely resulted from nitrification.
Weiyi Tang, Jeff Talbott, Timothy Jones, and Bess B. Ward
Biogeosciences, 21, 3239–3250, https://doi.org/10.5194/bg-21-3239-2024, https://doi.org/10.5194/bg-21-3239-2024, 2024
Short summary
Short summary
Wastewater treatment plants (WWTPs) are known to be hotspots of greenhouse gas emissions. However, the impact of WWTPs on the emission of the greenhouse gas N2O in downstream aquatic environments is less constrained. We found spatially and temporally variable but overall higher N2O concentrations and fluxes in waters downstream of WWTPs, pointing to the need for efficient N2O removal in addition to the treatment of nitrogen in WWTPs.
Laura Marin-Samper, Javier Arístegui, Nauzet Hernández-Hernández, and Ulf Riebesell
EGUsphere, https://doi.org/10.5194/egusphere-2024-1776, https://doi.org/10.5194/egusphere-2024-1776, 2024
Short summary
Short summary
This study exposed a natural community to two non-CO2 equilibrated ocean alkalinity enhancement (OAE) deployments using different minerals. Adding alkalinity in this manner decreases dissolved CO2, essential for photosynthesis. While photosynthesis was not suppressed, bloom formation was delayed, potentially impacting marine food webs. The study emphasizes the need for further research on OAE without prior equilibration and its ecological implications
Amanda Y. L. Cheong, Kogila Vani Annammala, Ee Ling Yong, Yongli Zhou, Robert S. Nichols, and Patrick Martin
Biogeosciences, 21, 2955–2971, https://doi.org/10.5194/bg-21-2955-2024, https://doi.org/10.5194/bg-21-2955-2024, 2024
Short summary
Short summary
We measured nutrients and dissolved organic matter for 1 year in a eutrophic tropical estuary to understand their sources and cycling. Our data show that the dissolved organic matter originates partly from land and partly from microbial processes in the water. Internal recycling is likely important for maintaining high nutrient concentrations, and we found that there is often excess nitrogen compared to silicon and phosphorus. Our data help to explain how eutrophication persists in this system.
Aaron Ferderer, Kai G. Schulz, Ulf Riebesell, Kirralee G. Baker, Zanna Chase, and Lennart T. Bach
Biogeosciences, 21, 2777–2794, https://doi.org/10.5194/bg-21-2777-2024, https://doi.org/10.5194/bg-21-2777-2024, 2024
Short summary
Short summary
Ocean alkalinity enhancement (OAE) is a promising method of atmospheric carbon removal; however, its ecological impacts remain largely unknown. We assessed the effects of simulated silicate- and calcium-based mineral OAE on diatom silicification. We found that increased silicate concentrations from silicate-based OAE increased diatom silicification. In contrast, the enhancement of alkalinity had no effect on community silicification and minimal effects on the silicification of different genera.
David González-Santana, María Segovia, Melchor González-Dávila, Librada Ramírez, Aridane G. González, Leonardo J. Pozzo-Pirotta, Veronica Arnone, Victor Vázquez, Ulf Riebesell, and J. Magdalena Santana-Casiano
Biogeosciences, 21, 2705–2715, https://doi.org/10.5194/bg-21-2705-2024, https://doi.org/10.5194/bg-21-2705-2024, 2024
Short summary
Short summary
In a recent experiment off the coast of Gran Canaria (Spain), scientists explored a method called ocean alkalinization enhancement (OAE), where carbonate minerals were added to seawater. This process changed the levels of certain ions in the water, affecting its pH and buffering capacity. The researchers were particularly interested in how this could impact the levels of essential trace metals in the water.
Lucas Porz, Wenyan Zhang, Nils Christiansen, Jan Kossack, Ute Daewel, and Corinna Schrum
Biogeosciences, 21, 2547–2570, https://doi.org/10.5194/bg-21-2547-2024, https://doi.org/10.5194/bg-21-2547-2024, 2024
Short summary
Short summary
Seafloor sediments store a large amount of carbon, helping to naturally regulate Earth's climate. If disturbed, some sediment particles can turn into CO2, but this effect is not well understood. Using computer simulations, we found that bottom-contacting fishing gears release about 1 million tons of CO2 per year in the North Sea, one of the most heavily fished regions globally. We show how protecting certain areas could reduce these emissions while also benefitting seafloor-living animals.
Jiaying A. Guo, Robert F. Strzepek, Kerrie M. Swadling, Ashley T. Townsend, and Lennart T. Bach
Biogeosciences, 21, 2335–2354, https://doi.org/10.5194/bg-21-2335-2024, https://doi.org/10.5194/bg-21-2335-2024, 2024
Short summary
Short summary
Ocean alkalinity enhancement aims to increase atmospheric CO2 sequestration by adding alkaline materials to the ocean. We assessed the environmental effects of olivine and steel slag powder on coastal plankton. Overall, slag is more efficient than olivine in releasing total alkalinity and, thus, in its ability to sequester CO2. Slag also had less environmental effect on the enclosed plankton communities when considering its higher CO2 removal potential based on this 3-week experiment.
Giovanni Galli, Sarah Wakelin, James Harle, Jason Holt, and Yuri Artioli
Biogeosciences, 21, 2143–2158, https://doi.org/10.5194/bg-21-2143-2024, https://doi.org/10.5194/bg-21-2143-2024, 2024
Short summary
Short summary
This work shows that, under a high-emission scenario, oxygen concentration in deep water of parts of the North Sea and Celtic Sea can become critically low (hypoxia) towards the end of this century. The extent and frequency of hypoxia depends on the intensity of climate change projected by different climate models. This is the result of a complex combination of factors like warming, increase in stratification, changes in the currents and changes in biological processes.
Sandy E. Tenorio and Laura Farías
Biogeosciences, 21, 2029–2050, https://doi.org/10.5194/bg-21-2029-2024, https://doi.org/10.5194/bg-21-2029-2024, 2024
Short summary
Short summary
Time series studies show that CH4 is highly dynamic on the coastal ocean surface and planktonic communities are linked to CH4 accumulation, as found in coastal upwelling off Chile. We have identified the crucial role of picoplankton (> 3 µm) in CH4 recycling, especially with the addition of methylated substrates (trimethylamine and methylphosphonic acid) during upwelling and non-upwelling periods. These insights improve understanding of surface ocean CH4 recycling, aiding CH4 emission estimates.
Charlotte A. J. Williams, Tom Hull, Jan Kaiser, Claire Mahaffey, Naomi Greenwood, Matthew Toberman, and Matthew R. Palmer
Biogeosciences, 21, 1961–1971, https://doi.org/10.5194/bg-21-1961-2024, https://doi.org/10.5194/bg-21-1961-2024, 2024
Short summary
Short summary
Oxygen (O2) is a key indicator of ocean health. The risk of O2 loss in the productive coastal/continental slope regions is increasing. Autonomous underwater vehicles equipped with O2 optodes provide lots of data but have problems resolving strong vertical O2 changes. Here we show how to overcome this and calculate how much O2 is supplied to the low-O2 bottom waters via mixing. Bursts in mixing supply nearly all of the O2 to bottom waters in autumn, stopping them reaching ecologically low levels.
Sabine Schmidt and Ibrahima Iris Diallo
Biogeosciences, 21, 1785–1800, https://doi.org/10.5194/bg-21-1785-2024, https://doi.org/10.5194/bg-21-1785-2024, 2024
Short summary
Short summary
Along the French coast facing the Bay of Biscay, the large Gironde and Loire estuaries suffer from hypoxia. This prompted a study of the small Charente estuary located between them. This work reveals a minimum oxygen zone in the Charente estuary, which extends for about 25 km. Temperature is the main factor controlling the hypoxia. This calls for the monitoring of small turbid macrotidal estuaries that are vulnerable to hypoxia, a risk expected to increase with global warming.
Jessica L. Oberlander, Mackenzie E. Burke, Cat A. London, and Hugh L. MacIntyre
EGUsphere, https://doi.org/10.5194/egusphere-2024-971, https://doi.org/10.5194/egusphere-2024-971, 2024
Short summary
Short summary
OAE is a promising negative emission technology that could restore the oceanic pH and carbonate system to a pre-industrial state. To our knowledge, this paper is the first to assess the potential impact of OAE on phytoplankton through an analysis of prior studies and the effects of simulated OAE on photosynthetic competence. Our findings suggest that there may be little if any significant impact on most phytoplankton studied to date if OAE is conducted in well-flushed, near-shore environments.
Simone R. Alin, Jan A. Newton, Richard A. Feely, Samantha Siedlecki, and Dana Greeley
Biogeosciences, 21, 1639–1673, https://doi.org/10.5194/bg-21-1639-2024, https://doi.org/10.5194/bg-21-1639-2024, 2024
Short summary
Short summary
We provide a new multi-stressor data product that allows us to characterize the seasonality of temperature, O2, and CO2 in the southern Salish Sea and delivers insights into the impacts of major marine heatwave and precipitation anomalies on regional ocean acidification and hypoxia. We also describe the present-day frequencies of temperature, O2, and ocean acidification conditions that cross thresholds of sensitive regional species that are economically or ecologically important.
Luisa Chiara Meiritz, Tim Rixen, Anja K. van der Plas, Tarron Lamont, and Niko Lahajnar
EGUsphere, https://doi.org/10.5194/egusphere-2024-700, https://doi.org/10.5194/egusphere-2024-700, 2024
Short summary
Short summary
The transport of particles through the water column and their subsequent burial on the seafloor is an important process for carbon storage and the mediation of carbon dioxide in the oceans. Our results from the Benguela Upwelling System distinguish between the northern and southern parts of the study area and between passive (gravitational) and active (zooplankton) transport processes. The decomposition of organic matter is doubtlessly an important factor for the size of oxygen minimum zones.
Pamela Linford, Iván Pérez-Santos, Paulina Montero, Patricio A. Díaz, Claudia Aracena, Elías Pinilla, Facundo Barrera, Manuel Castillo, Aida Alvera-Azcárate, Mónica Alvarado, Gabriel Soto, Cécile Pujol, Camila Schwerter, Sara Arenas-Uribe, Pilar Navarro, Guido Mancilla-Gutiérrez, Robinson Altamirano, Javiera San Martín, and Camila Soto-Riquelme
Biogeosciences, 21, 1433–1459, https://doi.org/10.5194/bg-21-1433-2024, https://doi.org/10.5194/bg-21-1433-2024, 2024
Short summary
Short summary
The Patagonian fjords comprise a world region where low-oxygen water and hypoxia conditions are observed. An in situ dataset was used to quantify the mechanism involved in the presence of these conditions in northern Patagonian fjords. Water mass analysis confirmed the contribution of Equatorial Subsurface Water in the advection of the low-oxygen water, and hypoxic conditions occurred when the community respiration rate exceeded the gross primary production.
Ting Wang, Buyun Du, Inke Forbrich, Jun Zhou, Joshua Polen, Elsie M. Sunderland, Prentiss H. Balcom, Celia Chen, and Daniel Obrist
Biogeosciences, 21, 1461–1476, https://doi.org/10.5194/bg-21-1461-2024, https://doi.org/10.5194/bg-21-1461-2024, 2024
Short summary
Short summary
The strong seasonal increases of Hg in aboveground biomass during the growing season and the lack of changes observed after senescence in this salt marsh ecosystem suggest physiologically controlled Hg uptake pathways. The Hg sources found in marsh aboveground tissues originate from a mix of sources, unlike terrestrial ecosystems, where atmospheric GEM is the main source. Belowground plant tissues mostly take up Hg from soils. Overall, the salt marsh currently serves as a small net Hg sink.
Eleanor Simpson, Debby Ianson, Karen E. Kohfeld, Ana C. Franco, Paul A. Covert, Marty Davelaar, and Yves Perreault
Biogeosciences, 21, 1323–1353, https://doi.org/10.5194/bg-21-1323-2024, https://doi.org/10.5194/bg-21-1323-2024, 2024
Short summary
Short summary
Shellfish aquaculture operates in nearshore areas where data on ocean acidification parameters are limited. We show daily and seasonal variability in pH and saturation states of calcium carbonate at nearshore aquaculture sites in British Columbia, Canada, and determine the contributing drivers of this variability. We find that nearshore locations have greater variability than open waters and that the uptake of carbon by phytoplankton is the major driver of pH and saturation state variability.
S. Alejandra Castillo Cieza, Rachel H. R. Stanley, Pierre Marrec, Diana N. Fontaine, E. Taylor Crockford, Dennis J. McGillicuddy Jr., Arshia Mehta, Susanne Menden-Deuer, Emily E. Peacock, Tatiana A. Rynearson, Zoe O. Sandwith, Weifeng Zhang, and Heidi M. Sosik
Biogeosciences, 21, 1235–1257, https://doi.org/10.5194/bg-21-1235-2024, https://doi.org/10.5194/bg-21-1235-2024, 2024
Short summary
Short summary
The coastal ocean in the northeastern USA provides many services, including fisheries and habitats for threatened species. In summer 2019, a bloom occurred of a large unusual phytoplankton, the diatom Hemiaulus, with nitrogen-fixing symbionts. This led to vast changes in productivity and grazing rates in the ecosystem. This work shows that the emergence of one species can have profound effects on ecosystem function. Such changes may become more prevalent as the ocean warms due to climate change.
Claudine Hauri, Brita Irving, Sam Dupont, Rémi Pagés, Donna D. W. Hauser, and Seth L. Danielson
Biogeosciences, 21, 1135–1159, https://doi.org/10.5194/bg-21-1135-2024, https://doi.org/10.5194/bg-21-1135-2024, 2024
Short summary
Short summary
Arctic marine ecosystems are highly susceptible to impacts of climate change and ocean acidification. We present pH and pCO2 time series (2016–2020) from the Chukchi Ecosystem Observatory and analyze the drivers of the current conditions to get a better understanding of how climate change and ocean acidification could affect the ecological niches of organisms.
William Hiles, Lucy C. Miller, Craig Smeaton, and William E. N. Austin
Biogeosciences, 21, 929–948, https://doi.org/10.5194/bg-21-929-2024, https://doi.org/10.5194/bg-21-929-2024, 2024
Short summary
Short summary
Saltmarsh soils may help to limit the rate of climate change by storing carbon. To understand their impacts, they must be accurately mapped. We use drone data to estimate the size of three saltmarshes in NE Scotland. We find that drone imagery, combined with tidal data, can reliably inform our understanding of saltmarsh size. When compared with previous work using vegetation communities, we find that our most reliable new estimates of stored carbon are 15–20 % smaller than previously estimated.
De'Marcus Robinson, Anh L. D. Pham, David J. Yousavich, Felix Janssen, Frank Wenzhöfer, Eleanor C. Arrington, Kelsey M. Gosselin, Marco Sandoval-Belmar, Matthew Mar, David L. Valentine, Daniele Bianchi, and Tina Treude
Biogeosciences, 21, 773–788, https://doi.org/10.5194/bg-21-773-2024, https://doi.org/10.5194/bg-21-773-2024, 2024
Short summary
Short summary
The present study suggests that high release of ferrous iron from the seafloor of the oxygen-deficient Santa Barabara Basin (California) supports surface primary productivity, creating positive feedback on seafloor iron release by enhancing low-oxygen conditions in the basin.
David J. Yousavich, De'Marcus Robinson, Xuefeng Peng, Sebastian J. E. Krause, Frank Wenzhöfer, Felix Janssen, Na Liu, Jonathan Tarn, Franklin Kinnaman, David L. Valentine, and Tina Treude
Biogeosciences, 21, 789–809, https://doi.org/10.5194/bg-21-789-2024, https://doi.org/10.5194/bg-21-789-2024, 2024
Short summary
Short summary
Declining oxygen (O2) concentrations in coastal oceans can threaten people’s ways of life and food supplies. Here, we investigate how mats of bacteria that proliferate on the seafloor of the Santa Barbara Basin sustain and potentially worsen these O2 depletion events through their unique chemoautotrophic metabolism. Our study shows how changes in seafloor microbiology and geochemistry brought on by declining O2 concentrations can help these mats grow as well as how that growth affects the basin.
Krysten Rutherford, Katja Fennel, Lina Garcia Suarez, and Jasmin G. John
Biogeosciences, 21, 301–314, https://doi.org/10.5194/bg-21-301-2024, https://doi.org/10.5194/bg-21-301-2024, 2024
Short summary
Short summary
We downscaled two mid-century (~2075) ocean model projections to a high-resolution regional ocean model of the northwest North Atlantic (NA) shelf. In one projection, the NA shelf break current practically disappears; in the other it remains almost unchanged. This leads to a wide range of possible future shelf properties. More accurate projections of coastal circulation features would narrow the range of possible outcomes of biogeochemical projections for shelf regions.
Lennart Thomas Bach
Biogeosciences, 21, 261–277, https://doi.org/10.5194/bg-21-261-2024, https://doi.org/10.5194/bg-21-261-2024, 2024
Short summary
Short summary
Ocean alkalinity enhancement (OAE) is a widely considered marine carbon dioxide removal method. OAE aims to accelerate chemical rock weathering, which is a natural process that slowly sequesters atmospheric carbon dioxide. This study shows that the addition of anthropogenic alkalinity via OAE can reduce the natural release of alkalinity and, therefore, reduce the efficiency of OAE for climate mitigation. However, the additionality problem could be mitigated via a variety of activities.
Tsuneo Ono, Daisuke Muraoka, Masahiro Hayashi, Makiko Yorifuji, Akihiro Dazai, Shigeyuki Omoto, Takehiro Tanaka, Tomohiro Okamura, Goh Onitsuka, Kenji Sudo, Masahiko Fujii, Ryuji Hamanoue, and Masahide Wakita
Biogeosciences, 21, 177–199, https://doi.org/10.5194/bg-21-177-2024, https://doi.org/10.5194/bg-21-177-2024, 2024
Short summary
Short summary
We carried out parallel year-round observations of pH and related parameters in five stations around the Japan coast. It was found that short-term acidified situations with Omega_ar less than 1.5 occurred at four of five stations. Most of such short-term acidified events were related to the short-term low salinity event, and the extent of short-term pH drawdown at high freshwater input was positively correlated with the nutrient concentration of the main rivers that flow into the coastal area.
K. Mareike Paul, Martijn Hermans, Sami A. Jokinen, Inda Brinkmann, Helena L. Filipsson, and Tom Jilbert
Biogeosciences, 20, 5003–5028, https://doi.org/10.5194/bg-20-5003-2023, https://doi.org/10.5194/bg-20-5003-2023, 2023
Short summary
Short summary
Seawater naturally contains trace metals such as Mo and U, which accumulate under low oxygen conditions on the seafloor. Previous studies have used sediment Mo and U contents as an archive of changing oxygen concentrations in coastal waters. Here we show that in fjords the use of Mo and U for this purpose may be impaired by additional processes. Our findings have implications for the reliable use of Mo and U to reconstruct oxygen changes in fjords.
Hannah Sharpe, Michel Gosselin, Catherine Lalande, Alexandre Normandeau, Jean-Carlos Montero-Serrano, Khouloud Baccara, Daniel Bourgault, Owen Sherwood, and Audrey Limoges
Biogeosciences, 20, 4981–5001, https://doi.org/10.5194/bg-20-4981-2023, https://doi.org/10.5194/bg-20-4981-2023, 2023
Short summary
Short summary
We studied the impact of submarine canyon processes within the Pointe-des-Monts system on biogenic matter export and phytoplankton assemblages. Using data from three oceanographic moorings, we show that the canyon experienced two low-amplitude sediment remobilization events in 2020–2021 that led to enhanced particle fluxes in the deep-water column layer > 2.6 km offshore. Sinking phytoplankton fluxes were lower near the canyon compared to background values from the lower St. Lawrence Estuary.
Dewi Langlet, Florian Mermillod-Blondin, Noémie Deldicq, Arthur Bauville, Gwendoline Duong, Lara Konecny, Mylène Hugoni, Lionel Denis, and Vincent M. P. Bouchet
Biogeosciences, 20, 4875–4891, https://doi.org/10.5194/bg-20-4875-2023, https://doi.org/10.5194/bg-20-4875-2023, 2023
Short summary
Short summary
Benthic foraminifera are single-cell marine organisms which can move in the sediment column. They were previously reported to horizontally and vertically transport sediment particles, yet the impact of their motion on the dissolved fluxes remains unknown. Using microprofiling, we show here that foraminiferal burrow formation increases the oxygen penetration depth in the sediment, leading to a change in the structure of the prokaryotic community.
Masahiko Fujii, Ryuji Hamanoue, Lawrence Patrick Cases Bernardo, Tsuneo Ono, Akihiro Dazai, Shigeyuki Oomoto, Masahide Wakita, and Takehiro Tanaka
Biogeosciences, 20, 4527–4549, https://doi.org/10.5194/bg-20-4527-2023, https://doi.org/10.5194/bg-20-4527-2023, 2023
Short summary
Short summary
This is the first study of the current and future impacts of climate change on Pacific oyster farming in Japan. Future coastal warming and acidification may affect oyster larvae as a result of longer exposure to lower-pH waters. A prolonged spawning period may harm oyster processing by shortening the shipping period and reducing oyster quality. To minimize impacts on Pacific oyster farming, in addition to mitigation measures, local adaptation measures may be required.
Taketoshi Kodama, Atsushi Nishimoto, Ken-ichi Nakamura, Misato Nakae, Naoki Iguchi, Yosuke Igeta, and Yoichi Kogure
Biogeosciences, 20, 3667–3682, https://doi.org/10.5194/bg-20-3667-2023, https://doi.org/10.5194/bg-20-3667-2023, 2023
Short summary
Short summary
Carbon and nitrogen are essential elements for organisms; their stable isotope ratios (13C : 12C, 15N : 14N) are useful tools for understanding turnover and movement in the ocean. In the Sea of Japan, the environment is rapidly being altered by human activities. The 13C : 12C of small organic particles is increased by active carbon fixation, and phytoplankton growth increases the values. The 15N : 14N variations suggest that nitrates from many sources contribute to organic production.
Aubin Thibault de Chanvalon, George W. Luther, Emily R. Estes, Jennifer Necker, Bradley M. Tebo, Jianzhong Su, and Wei-Jun Cai
Biogeosciences, 20, 3053–3071, https://doi.org/10.5194/bg-20-3053-2023, https://doi.org/10.5194/bg-20-3053-2023, 2023
Short summary
Short summary
The intensity of the oceanic trap of CO2 released by anthropogenic activities depends on the alkalinity brought by continental weathering. Between ocean and continent, coastal water and estuaries can limit or favour the alkalinity transfer. This study investigate new interactions between dissolved metals and alkalinity in the oxygen-depleted zone of estuaries.
Joonas J. Virtasalo, Peter Österholm, and Eero Asmala
Biogeosciences, 20, 2883–2901, https://doi.org/10.5194/bg-20-2883-2023, https://doi.org/10.5194/bg-20-2883-2023, 2023
Short summary
Short summary
We mixed acidic metal-rich river water from acid sulfate soils and seawater in the laboratory to study the flocculation of dissolved metals and organic matter in estuaries. Al and Fe flocculated already at a salinity of 0–2 to large organic flocs (>80 µm size). Precipitation of Al and Fe hydroxide flocculi (median size 11 µm) began when pH exceeded ca. 5.5. Mn transferred weakly to Mn hydroxides and Co to the flocs. Up to 50 % of Cu was associated with the flocs, irrespective of seawater mixing.
Moritz Baumann, Allanah Joy Paul, Jan Taucher, Lennart Thomas Bach, Silvan Goldenberg, Paul Stange, Fabrizio Minutolo, and Ulf Riebesell
Biogeosciences, 20, 2595–2612, https://doi.org/10.5194/bg-20-2595-2023, https://doi.org/10.5194/bg-20-2595-2023, 2023
Short summary
Short summary
The sinking velocity of marine particles affects how much atmospheric CO2 is stored inside our oceans. We measured particle sinking velocities in the Peruvian upwelling system and assessed their physical and biochemical drivers. We found that sinking velocity was mainly influenced by particle size and porosity, while ballasting minerals played only a minor role. Our findings help us to better understand the particle sinking dynamics in this highly productive marine system.
Kyle E. Hinson, Marjorie A. M. Friedrichs, Raymond G. Najjar, Maria Herrmann, Zihao Bian, Gopal Bhatt, Pierre St-Laurent, Hanqin Tian, and Gary Shenk
Biogeosciences, 20, 1937–1961, https://doi.org/10.5194/bg-20-1937-2023, https://doi.org/10.5194/bg-20-1937-2023, 2023
Short summary
Short summary
Climate impacts are essential for environmental managers to consider when implementing nutrient reduction plans designed to reduce hypoxia. This work highlights relative sources of uncertainty in modeling regional climate impacts on the Chesapeake Bay watershed and consequent declines in bay oxygen levels. The results demonstrate that planned water quality improvement goals are capable of reducing hypoxia levels by half, offsetting climate-driven impacts on terrestrial runoff.
Linquan Mu, Jaime B. Palter, and Hongjie Wang
Biogeosciences, 20, 1963–1977, https://doi.org/10.5194/bg-20-1963-2023, https://doi.org/10.5194/bg-20-1963-2023, 2023
Short summary
Short summary
Enhancing ocean alkalinity accelerates carbon dioxide removal from the atmosphere. We hypothetically added alkalinity to the Amazon River and examined the increment of the carbon uptake by the Amazon plume. We also investigated the minimum alkalinity addition in which this perturbation at the river mouth could be detected above the natural variability.
Karl M. Attard, Anna Lyssenko, and Iván F. Rodil
Biogeosciences, 20, 1713–1724, https://doi.org/10.5194/bg-20-1713-2023, https://doi.org/10.5194/bg-20-1713-2023, 2023
Short summary
Short summary
Aquatic plants produce a large amount of organic matter through photosynthesis that, following erosion, is deposited on the seafloor. In this study, we show that plant detritus can trigger low-oxygen conditions (hypoxia) in shallow coastal waters, making conditions challenging for most marine animals. We propose that the occurrence of hypoxia may be underestimated because measurements typically do not consider the region closest to the seafloor, where detritus accumulates.
M. James McLaughlin, Cindy Bessey, Gary A. Kendrick, John Keesing, and Ylva S. Olsen
Biogeosciences, 20, 1011–1026, https://doi.org/10.5194/bg-20-1011-2023, https://doi.org/10.5194/bg-20-1011-2023, 2023
Short summary
Short summary
Coral reefs face increasing pressures from environmental change at present. The coral reef framework is produced by corals and calcifying algae. The Kimberley region of Western Australia has escaped land-based anthropogenic impacts. Specimens of the dominant coral and algae were collected from Browse Island's reef platform and incubated in mesocosms to measure calcification and production patterns of oxygen. This study provides important data on reef building and climate-driven effects.
Patricia Ayón Dejo, Elda Luz Pinedo Arteaga, Anna Schukat, Jan Taucher, Rainer Kiko, Helena Hauss, Sabrina Dorschner, Wilhelm Hagen, Mariona Segura-Noguera, and Silke Lischka
Biogeosciences, 20, 945–969, https://doi.org/10.5194/bg-20-945-2023, https://doi.org/10.5194/bg-20-945-2023, 2023
Short summary
Short summary
Ocean upwelling regions are highly productive. With ocean warming, severe changes in upwelling frequency and/or intensity and expansion of accompanying oxygen minimum zones are projected. In a field experiment off Peru, we investigated how different upwelling intensities affect the pelagic food web and found failed reproduction of dominant zooplankton. The changes projected could severely impact the reproductive success of zooplankton communities and the pelagic food web in upwelling regions.
Mathilde Jutras, Alfonso Mucci, Gwenaëlle Chaillou, William A. Nesbitt, and Douglas W. R. Wallace
Biogeosciences, 20, 839–849, https://doi.org/10.5194/bg-20-839-2023, https://doi.org/10.5194/bg-20-839-2023, 2023
Short summary
Short summary
The deep waters of the lower St Lawrence Estuary and gulf have, in the last decades, experienced a strong decline in their oxygen concentration. Below 65 µmol L-1, the waters are said to be hypoxic, with dire consequences for marine life. We show that the extent of the hypoxic zone shows a seven-fold increase in the last 20 years, reaching 9400 km2 in 2021. After a stable period at ~ 65 µmol L⁻¹ from 1984 to 2019, the oxygen level also suddenly decreased to ~ 35 µmol L-1 in 2020.
Sachi Umezawa, Manami Tozawa, Yuichi Nosaka, Daiki Nomura, Hiroji Onishi, Hiroto Abe, Tetsuya Takatsu, and Atsushi Ooki
Biogeosciences, 20, 421–438, https://doi.org/10.5194/bg-20-421-2023, https://doi.org/10.5194/bg-20-421-2023, 2023
Short summary
Short summary
We conducted repetitive observations in Funka Bay, Japan, during the spring bloom 2019. We found nutrient concentration decreases in the dark subsurface layer during the bloom. Incubation experiments confirmed that diatoms could consume nutrients at a substantial rate, even in darkness. We concluded that the nutrient reduction was mainly caused by nutrient consumption by diatoms in the dark.
Dirk Jong, Lisa Bröder, Tommaso Tesi, Kirsi H. Keskitalo, Nikita Zimov, Anna Davydova, Philip Pika, Negar Haghipour, Timothy I. Eglinton, and Jorien E. Vonk
Biogeosciences, 20, 271–294, https://doi.org/10.5194/bg-20-271-2023, https://doi.org/10.5194/bg-20-271-2023, 2023
Short summary
Short summary
With this study, we want to highlight the importance of studying both land and ocean together, and water and sediment together, as these systems function as a continuum, and determine how organic carbon derived from permafrost is broken down and its effect on global warming. Although on the one hand it appears that organic carbon is removed from sediments along the pathway of transport from river to ocean, it also appears to remain relatively ‘fresh’, despite this removal and its very old age.
Cited articles
Aiken, J., Pradhan, Y., Barlow, R., Lavender, S., Poulton, A., Holligan, P., and Hardman-Mountford, N.: Phytoplankton pigments and functional types in the Atlantic Ocean: a decadal assessment, Deep-Sea Res. Pt II, 56, 899–917, 2009.
Aldridge, J., van der Molen, J., and Forster, R.: Wider ecological implications of Macroalgae cultivation, The Crown Estate, London, ISBN: 978-1-906410-38-4, 95 pp., 2012.
Allen, J. I. and Clarke, K. R.: Effects of demersal trawling on ecosystem functioning in the North Sea: a modelling study, Mar. Ecol.-Prog. Ser., 336, 63–75, 2007.
Anderson, T. R.: Plankton functional type modelling: running before we can walk?, J. Plankton Res., 27, 1073–1081, 2005.
Balmaseda M. A., Mogensen, K., and Weaver, A.: Evaluation of the ECMWF Ocean Reanalysis ORAS4, Q. J. Roy. Meteor. Soc., 139, 1132–1161, 2013.
Baretta, J. W., Ebenhöh, W., and Ruardij, P.: The European Regional Seas Ecosystem Model, a complex marine ecosystem model, Neth. J. Sea Res., 33, 233–246, 1995.
Barton, A. D., Dutkiewicz, S., Flierl, G., Bragg, J., and Follows, M. J.: Patterns of diversity in marine phytoplankton, Science, 327, 1509–1511, 2010.
Blackford, J. C., Allen, J. I., and Gilbert, F. J.: Ecosystem dynamics at six contrasting sites: a generic modelling study, J. Marine Syst., 52, 191–215, 2004.
Blauw, A. N., Los, F. J., Huisman, J,, and Peperzak, L.: Nuisance foam events and Phaeocystis globosa blooms in Dutch coastal waters analyzed with fuzzy logic, J. Marine Syst., 83, 115–126, 2010.
Blockley, E. W., Martin, M. J., McLaren, A. J., Ryan, A. G., Waters, J., Lea, D. J., Mirouze, I., Peterson, K. A., Sellar, A., and Storkey, D.: Recent development of the Met Office operational ocean forecasting system: an overview and assessment of the new Global FOAM forecasts, Geosci. Model Dev., 7, 2613–2638, https://doi.org/10.5194/gmd-7-2613-2014, 2014.
Borja, A., Elliott, M., Andersen, J. H., Cardoso, A. C., Carstensen, J., Ferreira, J. G., Heiskanen, A. S., Marques, J. C., Neto, J. M., Teixeira, H., and Uusitalo, L.: Good Environmental Status of marine ecosystems: What is it and how do we know when we have attained it?, Mar. Pollut. Bull., 76, 16–27, 2013.
Boyes, S. J. and Elliott, M.: Marine legislation – The ultimate “horrendogram”: International law, European directives and national implementation, Mar. Pollut. Bull., 86, 39–47, 2014.
Brandsma, J., Martínez, J. M., Slagter, H. A., Evans, C., and Brussaard, C. P.: Microbial biogeography of the North Sea during summer, Biogeochemistry, 113, 119–136, 2013.
Brewin, R. J., Sathyendranath, S., Hirata, T., Lavender, S. J., Barciela, R. M., and Hardman-Mountford, N. J.: A three-component model of phytoplankton size class for the Atlantic Ocean, Ecol. Model., 221, 1472–1483, 2010.
Brewin, R. J., Hardman-Mountford, N. J., Lavender, S. J., Raitsos, D. E., Hirata, T., Uitz, J., Devred, E., Bricaud, A., Ciotti, A., and Gentili, B.: An intercomparison of bio-optical techniques for detecting dominant phytoplankton size class from satellite remote sensing, Remote Sens. Environ., 115, 325–339, 2011.
Brito, A. C., Sá, C., Brotas, V., Brewin, R. J., Silva, T., Vitorino, J., Platt, T., and Sathyendranath, S.: Effect of phytoplankton size classes on bio-optical properties of phytoplankton in the Western Iberian coast: Application of models, Remote Sens. Environ., 156, 537–550, 2014.
Brotas, V., Brewin, R. J., Sá, C., Brito, A. C., Silva, A., Mendes, C. R., Diniz, T., Kaufmann, M., Tarran, G., Groom, S. B., and Platt, T.: Deriving phytoplankton size classes from satellite data: Validation along a trophic gradient in the eastern Atlantic Ocean, Remote Sens. Environ., 134, 66–77, 2013.
Bruggeman, J.: Succession in plankton communities: A trait-based perspective, PhD thesis, Vrije Universiteit Amsterdam, 2009.
Bruggeman, J. and Bolding, K.: A general framework for aquatic biogeochemical models, Environ. Modell. Softw., 61, 249–265, 2014.
Burchard, H. and Bolding, K.: GETM: A General Estuarine Transport Model; Scientific Documentation, Tech. Rep. EUR 20253 EN, European Commission, 2002.
Butenschön, M., Clark, J., Aldridge, J. N., Allen, J. I., Artioli, Y., Blackford, J., Bruggeman, J., Cazenave, P., Ciavatta, S., Kay, S., Lessin, G., van Leeuwen, S., van der Molen, J., de Mora, L., Polimene, L., Sailley, S., Stephens, N., and Torres, R.: ERSEM 15.06: a generic model for marine biogeochemistry and the ecosystem dynamics of the lower trophic levels, Geosci. Model Dev., 9, 1293–1339, https://doi.org/10.5194/gmd-9-1293-2016, 2016.
Campbell, J. W.: The lognormal distribution as a model for bio-optical variability in the sea, J. Geophys. Res.-Oceans, 100, 13237–13254, 1995.
Capuzzo, E., Stephens, D., Silva, T., Barry, J., and Forster, R. M.: Decrease in water clarity of the southern and central North Sea during the 20th century, Glob. Change Biol., 21, 2206–2214, 2015.
Chassot, E., Mélin, F., Le Pape, O., and Gascuel, D.: Bottom-up control regulates fisheries production at the scale of eco-regions in European seas, Mar. Ecol.-Prog. Ser., 343, 45–55, 2007.
Chavez, F. P., Messié, M., and Pennington, J. T.: Marine Primary Production in Relation to Climate Variability and Change, Annu. Rev. Mar. Sci., 3, 227–260, 2011.
Ciavatta, S., Torres, R., Saux-Picart, S., and Allen, J. I.: Can ocean color assimilation improve biogeochemical hindcasts in shelf seas?, J. Geophys. Res.-Oceans, 116, C12043, https://doi.org/10.1029/2011JC007219, 2011.
Ciavatta, S., Torres, R., Martinez-Vicente, V., Smyth, T., Dall'Olmo, G., Polimene, L., and Allen, J. I.: Assimilation of remotely-sensed optical properties to improve marine biogeochemistry modelling, Prog. Oceanogr., 127, 74–95, 2014.
Ciavatta, S., Kay, S., Saux-Picart, S., Butenschön, M., and Allen, J. I.: Decadal reanalysis of biogeochemical indicators and fluxes in the North West European shelf-sea ecosystem, J. Geophys. Res.-Oceans, 121, 1824–1845, 2016.
Courant, R., Friedrichs, K., and Lewy, H.: Über die partiellen Differenzengleichungen der mathematischen Physik, Math. Ann., 100, 32–74, 1928.
Daan, N., Gislason, H., Pope, J. G., and Rice, J. C.: Changes in the North Sea fish community: evidence of indirect effects of fishing?, ICES J. Mar. Sci., 62, 177–188, 2005.
Dee, D. P., Uppala, S. M., Simmons, A. J., Berrisford, P., Poli, P., Kobayashi, S., Andrae, U., Balmaseda, M. A., Balsamo, G., Bauer, P., Bechtold, P., Beljaars, A. C. M., van de Berg, L., Bidlot, J., Bormann, N., Delsol, C., Dragani, R., Fuentes, M., Geer, A. J., Haimberger, L., Healy, S. B., Hersbach, H., Hólm, E. V., Isaksen, L., Kållberg, P., Köhler, M., Matricardi, M., McNally, A. P., Monge-Sanz, B. M., Morcrette, J.-J., Park, B.-K., Peubey, C., de Rosnay, P., Tavolato, C., Thépaut, J.-N., and Vitart, F.: The ERA-Interim reanalysis: configuration and performance of the data assimilation system, Q. J. Roy. Meteor. Soc., 137, 553–597, 2011.
Defra: Making the most of our evidence?: a strategy for Defra and its network, Department for Environment, Food and Rural Affairs, London, UK, 2014.
de Mora, L., Butenschön, M., and Allen, J. I.: How should sparse marine in situ measurements be compared to a continuous model: an example, Geosci. Model Dev., 6, 533–548, https://doi.org/10.5194/gmd-6-533-2013, 2013.
de Mora, L., Butenschön, M., and Allen, J. I.: The assessment of a global marine ecosystem model on the basis of emergent properties and ecosystem function: a case study with ERSEM, Geosci. Model Dev., 9, 59–76, https://doi.org/10.5194/gmd-9-59-2016, 2016.
Devred, E., Sathyendranath, S., Stuart, V., and Platt, T.: A three component classification of phytoplankton absorption spectra: Application to ocean-color data, Remote Sens. Environ., 115, 2255–2266, 2011.
Donlon, C. J., Martin, M., Stark, J., Roberts-Jones, J., Fiedler, E., and Wimmer, W.: The operational sea surface temperature and sea ice analysis (OSTIA) system, Remote Sens. Environ., 116, 140–158, 2012.
Donnelly, C., Andersson, J. C., and Arheimer, B.: Using flow signatures and catchment similarities to evaluate the E-HYPE multi-basin model across Europe, Hydrolog. Sci. J., 61, 255–273, 2015.
Dupont, N. and Aksnes, D. L.: Centennial changes in water clarity of the Baltic Sea and the North Sea, Estuar. Coast. Shelf S., 131, 282–289, 2013.
ECMWF: European Centre for Medium-Range Weather Forecasts (ECMWF) 40-year Re-Analysis (ERA-40) model data, NCAS British Atmospheric Data Centre, available at: http://catalogue.ceda.ac.uk/uuid/775634f7e339b5262067e28a5d7b679d (last access: July 2007), 2006a.
ECMWF: Assimilated Data from the European Centre for Medium-Range Weather Forecasts (ECMWF) operational analysis program, NCAS British Atmospheric Data Centre, available at: http://catalogue.ceda.ac.uk/uuidf6ce34fc/c462480467660a36d9b10a71 (last access: January 2012), 2006b.
Edwards, K. P., Barciela, R., and Butenschön, M.: Validation of the NEMO-ERSEM operational ecosystem model for the North West European Continental Shelf, Ocean Sci., 8, 983–1000, https://doi.org/10.5194/os-8-983-2012, 2012.
Engel, A.: The role of transparent exopolymer particles (TEP) in the increase in apparent particle stickiness (α) during the decline of a diatom bloom, J. Plankton Res., 22, 485–497, 2000.
EU: Directive 2000/60/EC of the European Parliament and of the Council of 23 October 2000 establishing a framework for Community action in the field of water policy, European Parliament and Council of the European Union, Off. J. Eur. Communities, 327, 1–72, 2000.
EU: Directive 2008/56/EC of the European Parliament and of the Council of 17 June 2008 establishing a framework for community action in the field of marine environmental policy (Marine Strategy Framework Directive), European Parliament and Council of the European Union, Off. J. Eur. Union, 164, 19–40, 2008.
EU: Regulation (EU) No 1380/2013 of the European Parliament and of the Council of 11 December 2013 on the Common Fisheries Policy, amending council Regulations (EC) No 1954/2003 and (EC) No 1224/2009 and repealing Council regulations (EC) No 2371/2002 and (EC) No 639/2004 and Council Decision 2004/585/EC, Off. J. Eur. Union, 354, 22–61, 2013.
Finkel, Z. V., Beardall, J., Flynn, K. J., Quigg, A., Rees, T. A. V., and Raven, J. A.: Phytoplankton in a changing world: cell size and elemental stoichiometry, J. Plankton Res., 32, 119–137, 2010.
Follows, M. J., Dutkiewicz, S., Grant, S., and Chisholm, S. W.: Emergent biogeography of microbial communities in a model ocean, Science, 315, 1843–1846, 2007.
Friedrichs, M. A., Dusenberry, J. A., Anderson, L. A., Armstrong, R. A., Chai, F., Christian, J. R., Doney, S. C., Dunne, J., Fujii, M., Hood, R., and McGillicuddy, D. J.: Assessment of skill and portability in regional marine biogeochemical models: Role of multiple planktonic groups, J. Geophys. Res.-Oceans, 112, C08001, https://doi.org/10.1029/2006JC003852, 2007.
Fulton, E. A. and Link, J. S.: Modeling Approaches for Marine Ecosystem-based Management, in: The Sea, Vol. 16: Marine Ecosystem-Based Management, edited by: Fogarty, M. J. and McCarthy, J. J., Harvard University Press, 2014.
Fulton, E. A., Link, J. S., Kaplan, I. C., Savina-Rolland, M., Johnson, P., Ainsworth, C., Horne, P., Gorton, R., Gamble, R. J., Smith, A. D., and Smith, D. C.: Lessons in modelling and management of marine ecosystems: the Atlantis experience, Fish Fish., 12, 171–188, 2007.
Garcia, H. E., Locarnini, R. A., Boyer, T. P., Antonov, J. I., Zweng, M. M., Baranova, O. K., and Johnson, D. R.: World Ocean Atlas 2009, Vol. 4: Nutrients (phosphate, nitrate, silicate), edited by: Levitus, S., NOAA Atlas NESDIS 71, US Government Printing Office, Washington, D.C., 398 pp., 2010.
Gårdmark, A., Lindegren, M., Neuenfeldt, S., Blenckner, T., Heikinheimo, O., Müller-Karulis, B., Niiranen, S., Tomczak, M. T., Aro, E., Wikström, A., and Möllmann, C.: Biological ensemble modeling to evaluate potential futures of living marine resources, Ecol. Appl., 23, 742–754, 2013.
Garmendia, M., Borja, A., Franco, J., and Revilla, M.: Phytoplankton composition indicators for the assessment of eutrophication in marine waters: Present state and challenges within the European directives, Mar. Pollut. Bull., 66, 7–16, 2013.
Gehlen, M., Barciela, R., Bertino, L., Brasseur, P., Butenschön, M., Chai, F., Crise, A., Drillet, Y., Ford, D., Lavoie, D., and Lehodey, P.: Building the capacity for forecasting marine biogeochemistry and ecosystems: recent advances and future developments, Journal of Operational Oceanography, 8, s168–s187, 2015.
Geider, R. J., MacIntyre, H. L., and Kana, T. M.: Dynamic model of phytoplankton growth and acclimation: responses of the balanced growth rate and the chlorophyll a: carbon ratio to light, nutrient-limitation and temperature, Mar. Ecol.-Prog. Ser., 148, 187–200, 1997.
Gohin, F., Druon, J. N., and Lampert, L.: A five channel chlorophyll concentration algorithm applied to SeaWiFS data processed by SeaDAS in coastal waters, Int. J. Remote S., 23, 1639–1661, 2002.
Gohin, F., Loyer, S., Lunven, M., Labry, C., Froidefond, J. M., Delmas, D., Huret, M., and Herbland, A.: Satellite-derived parameters for biological modelling in coastal waters: Illustration over the eastern continental shelf of the Bay of Biscay, Remote Sens. Environ., 95, 29–46, 2005.
Gohin, F., Saulquin, B., Oger-Jeanneret, H., Lozac'h, L., Lampert, L., Lefebvre, A., Riou, P., and Bruchon, F.: Towards a better assessment of the ecological status of coastal waters using satellite-derived chlorophyll-a concentrations, Remote Sens. Environ., 112, 3329–3340, 2008.
Greenwood, N., Parker, E. R., Fernand, L., Sivyer, D. B., Weston, K., Painting, S. J., Kröger, S., Forster, R. M., Lees, H. E., Mills, D. K., and Laane, R. W. P. M.: Detection of low bottom water oxygen concentrations in the North Sea; implications for monitoring and assessment of ecosystem health, Biogeosciences, 7, 1357–1373, https://doi.org/10.5194/bg-7-1357-2010, 2010.
Gregg, W. W. and Casey, N. W.: Modeling coccolithophores in the global oceans, Deep-Sea Res. Pt II, 54, 447–477, 2007.
Hirata, T., Aiken, J., Hardman-Mountford, N., Smyth, T. J., and Barlow, R. G.: An absorption model to determine phytoplankton size classes from satellite ocean colour, Remote Sens. Environ., 112, 3153–3159, 2008.
Hirata, T., Hardman-Mountford, N. J., Brewin, R. J. W., Aiken, J., Barlow, R., Suzuki, K., Isada, T., Howell, E., Hashioka, T., Noguchi-Aita, M., and Yamanaka, Y.: Synoptic relationships between surface Chlorophyll-a and diagnostic pigments specific to phytoplankton functional types, Biogeosciences, 8, 311–327, https://doi.org/10.5194/bg-8-311-2011, 2011.
Hirata, T., Saux-Picart, S., Hashioka, T., Aita-Noguchi, M., Sumata, H., Shigemitsu, M., Allen, J. I., and Yamanaka, Y.: A comparison between phytoplankton community structures derived from a global 3D ecosystem model and satellite observation, J. Marine Syst., 109, 129–137, 2013.
Holt, J. T. and James, I. D.: An s coordinate density evolving model of the northwest European continental shelf: 1. Model description and density structure, J. Geophys. Res.-Oceans, 106, 14015–14034, 2001.
Holt, J. T., Allen, J. I., Proctor, R., and Gilbert, F.: Error quantification of a high-resolution coupled hydrodynamic-ecosystem coastal-ocean model: Part 1. Model overview and assessment of the hydrodynamics, J. Marine Syst., 57, 167–188, 2005.
Holt, J., Allen, J. I., Anderson, T. R., Brewin, R., Butenschön, M., Harle, J., Huse, G., Lehodey, P., Lindemann, C., Memery, L., and Salihoglu, B.: Challenges in integrative approaches to modelling the marine ecosystems of the North Atlantic: Physics to fish and coasts to ocean, Prog. Oceanogr., 129, 285–313, 2014.
Hyder, K., Rossberg, A. G., Allen, J. I., Austen, M. C., Barciela, R. M., Bannister, H. J., Blackwell, P. G., Blanchard, J. L., Burrows, M. T., Defriez, E., and Dorrington, T.: Making modelling count-increasing the contribution of shelf-seas community and ecosystem models to policy development and management, Mar. Policy, 61, 291–302, 2015.
Jennings, S. and Collingridge, K.: Predicting consumer biomass, size-structure, production, catch potential, responses to fishing and associated uncertainties in the world's marine ecosystems, PloS one, 10, e0133794, https://doi.org/10.1371/journal.pone.0133794, 2015.
Jennings, S., Greenstreet, S., Hill, L., Piet, G., Pinnegar, J., and Warr, K. J.: Long-term trends in the trophic structure of the North Sea fish community: evidence from stable-isotope analysis, size-spectra and community metrics, Mar. Biol., 141, 1085–1097, 2002.
Jupp, T. E., Lowe, R., Coelho, C. A., and Stephenson, D. B.: On the visualization, verification and recalibration of ternary probabilistic forecasts, Philos. T. R. Soc. A, 370, 1100–1120, 2012.
Kurekin, A. A., Miller, P. I., and van der Woerd, H. J.: Satellite discrimination of Karenia mikimotoi and Phaeocystis harmful algal blooms in European coastal waters: Merged classification of ocean colour data, Harmful Algae, 31, 163–176, 2014.
Kwiatkowski, L., Yool, A., Allen, J. I., Anderson, T. R., Barciela, R., Buitenhuis, E. T., Butenschön, M., Enright, C., Halloran, P. R., Le Quéré, C., de Mora, L., Racault, M.-F., Sinha, B., Totterdell, I. J., and Cox, P. M.: iMarNet: an ocean biogeochemistry model intercomparison project within a common physical ocean modelling framework, Biogeosciences, 11, 7291–7304, https://doi.org/10.5194/bg-11-7291-2014, 2014.
Lenhart, H. J., Mills, D. K., Baretta-Bekker, H., van Leeuwen, S. M., van der Molen, J., Baretta, J. W., Blaas, M., Desmit, X., Kühn, W., Lacroix, G., Los, H. J., Ménesguen, A., Neves, R., Proctor, R., Ruardij, P., Skogen, M. D., Vanhoutte-Grunier, A., Villars, M. T., and Wakelin, S. L.: Predicting the consequences of nutrient reduction on the eutrophication status of the North Sea, J. Marine Syst., 81, 148–170, 2010.
Le Quéré, C., Harrison, S. P., Prentice, I. C., Buitenhuis, E. T., Aumont, O., Bopp, L., Claustre, H., Cotrim Da Cunha, L., Geider, R., Giraud, X., and Klaas, C.: Ecosystem dynamics based on plankton functional types for global ocean biogeochemistry models, Global Change Biol., 11, 2016–2040, 2005.
Lewis, K. and Allen, J. I.: Validation of a hydrodynamic-ecosystem model simulation with time-series data collected in the western English Channel, J. Marine Syst., 77, 296–311, 2009.
Lewis, K., Allen, J. I., Richardson, A. J., and Holt, J. T.: Error quantification of a high resolution coupled hydrodynamic-ecosystem coastal-ocean model: Part 3, validation with Continuous Plankton Recorder data, J. Marine Syst., 63, 209–224, 2006.
Mackinson, S.: Combined analyses reveal environmentally driven changes in the North Sea ecosystem and raise questions regarding what makes an ecosystem model's performance credible?, Can. J. Fish. Aquat. Sci., 71, 31–46, 2014.
MacLachlan, C., Arribas, A., Peterson, D., Maidens, A., Fereday, D., Scaife, A. A., Gordon, M., Vellinga, M., Williams, A., Comer, R. E., Camp, J., and Xavier, P.: Global Seasonal Forecast System 5 (GloSea5): a high resolution seasonal forecast system, Q. J. Roy. Meteor. Soc., 141, 1072–1084, 2014.
Madec, G.: NEMO ocean engine, Note du Pole de modélisation, Insititut Pierre-Simon Laplace (IPSL), France, No. 27, 2008.
Mogensen, K., Balmaseda, M., and Weaver, A.: The NEMOVAR ocean data assimilation system as implemented in the ECMWF ocean analysis for System4, ECMWF Technical Memorandum 668, 59 pp., 2012.
Nair, A., Sathyendranath, S., Platt, T., Morales, J., Stuart, V., Forget, M.-H., Devred, E., and Bouman, H.: Remote sensing of phytoplankton functional types, Remote Sens. Environ., 112, 3366–3375, 2008.
Núñez-Riboni, I. and Akimova, A.: Monthly maps of optimally interpolated in situ hydrography in the North Sea from 1948 to 2013, J. Marine Syst., 151, 15–34, 2015.
O'Dea, E., Furner, R., Wakelin, S., Siddorn, J., While, J., Sykes, P., King, R., Holt, J., and Hewitt, H.: The CO5 configuration of the 7 km Atlantic Margin Model: Large scale biases and sensitivity to forcing, physics options and vertical resolution, Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2017-15, in review, 2017.
O'Dea, E. J., Arnold, A. K., Edwards, K. P., Furner, R., Hyder, P., Martin, M. J., Siddorn, J. R., Storkey, D., While, J., Holt, J. T., and Liu, H.: An operational ocean forecast system incorporating NEMO and SST data assimilation for the tidally driven European North-West shelf, Journal of Operational Oceanography, 5, 3–17, 2012.
Peloquin, J., Swan, C., Gruber, N., Vogt, M., Claustre, H., Ras, J., Uitz, J., Barlow, R., Behrenfeld, M., Bidigare, R., Dierssen, H., Ditullio, G., Fernandez, E., Gallienne, C., Gibb, S., Goericke, R., Harding, L., Head, E., Holligan, P., Hooker, S., Karl, D., Landry, M., Letelier, R., Llewellyn, C. A., Lomas, M., Lucas, M., Mannino, A., Marty, J.-C., Mitchell, B. G., Muller-Karger, F., Nelson, N., O'Brien, C., Prezelin, B., Repeta, D., Jr. Smith, W. O., Smythe-Wright, D., Stumpf, R., Subramaniam, A., Suzuki, K., Trees, C., Vernet, M., Wasmund, N., and Wright, S.: The MAREDAT global database of high performance liquid chromatography marine pigment measurements, Earth Syst. Sci. Data, 5, 109–123, https://doi.org/10.5194/essd-5-109-2013, 2013.
Peperzak, L., Colijn, F., Gieskes, W. W. C., and Peeters, J. C. H.: Development of the diatom-Phaeocystis spring bloom in the Dutch coastal zone of the North Sea: the silicon depletion versus the daily irradiance threshold hypothesis, J. Plankton Res., 20, 517–537, 1998.
Petersen, W., Wehde, H., Krasemann, H., Colijn, F., and Schroeder, F.: FerryBox and MERIS – Assessment of coastal and shelf sea ecosystems by combining in situ and remotely sensed data, Estuar. Coast. Shelf. S., 77, 296–307, 2008.
Piroddi, C., Teixeira, H., Lynam, C. P., Smith, C., Alvarez, M. C., Mazik, K., Andonegi, E., Churilova, T., Tedesco, L., Chifflet, M., and Chust, G.: Using ecological models to assess ecosystem status in support of the European Marine Strategy Framework Directive, Ecol. Indic., 58, 175–191, 2015.
Plagányi, É. E., Punt, A. E., Hillary, R., Morello, E. B., Thébaud, O., Hutton, T., Pillans, R. D., Thorson, J. T., Fulton, E. A., Smith, A. D., and Smith, F.: Multispecies fisheries management and conservation: tactical applications using models of intermediate complexity, Fish Fish., 15, 1–22, 2014.
Richardson, A. J., Walne, A. W., John, A. W. G., Jonas, T. D., Lindley, J. A., Sims, D. W., Stevens, D., and Witt, M.: Using continuous plankton recorder data, Prog. Oceanogr., 68, 27–74, 2006.
Rombouts, I., Beaugrand, G., Fizzala, X., Gaill, F., Greenstreet, S. P. R., Lamare, S., Le Loc'h, F., McQuatters-Gollop, A., Mialet, B., Niquil, N., and Percelay, J.: Food web indicators under the Marine Strategy Framework Directive: From complexity to simplicity?, Ecol. Indic., 29, 246–254, 2013.
Roselli, L. and Basset, A.: Decoding size distribution patterns in marine and transitional water phytoplankton: from community to species level, PloS one, 10, e0127193, https://doi.org/10.1371/journal.pone.0127193, 2015.
Ruardij, P. and van Raaphorst, W.: Benthic nutrient regeneration in the ERSEM-BFM ecosystem model of the North Sea, Neth. J. Sea Res., 33, 453–483, 1995.
Ruardij, P., van Haren, H., and Ridderinkhof, H.: The impact of thermal stratification on phytoplankton and nutrient dynamics in shelf seas, J. Sea Res., 38, 311–331, 1997.
Ruardij, P., Veldhuis, M. J. W., and Brussaard, C. P. D.: Modeling the bloom dynamics of the polymorphic phytoplankter Phaeocystis globosa: impact of grazers and viruses, Harmful Algae, 4, 941–963, 2005.
Ryther, J. H.: Photosynthesis and fish production in the sea. The production of organic matter and its conversion to higher forms of life vary throughout the world ocean, Science, 166, 72–76, 1969.
Schlüter, L., Henriksen, P., Nielsen, T. G., and Jakobsen, H. H.: Phytoplankton composition and biomass across the southern Indian Ocean, Deep-Sea Res. Pt I, 58, 546–556, 2011.
Schlüter, L., Møhlenberg, F., and Kaas, H.: Temporal and spatial variability of phytoplankton monitored by a combination of monitoring buoys, pigment analysis and fast screening microscopy in the Fehmarn Belt Estuary, Environ. Monit. Assess., 186, 5167–5184, 2014.
Shephard, S., Greenstreet, S. P., Piet, G. J., Rindorf, A., and Dickey-Collas, M.: Surveillance indicators and their use in implementation of the Marine Strategy Framework Directive, ICES J. Mar. Sci., 72, 2269–2277, https://doi.org/10.1093/icesjms/fsv131, 2015.
Sherrard, N. J., Nimmo, M., and Llewellyn, C. A.: Combining HPLC pigment markers and ecological similarity indices to assess phytoplankton community structure: an environmental tool for eutrophication?, Sci. Total Environ., 361, 97–110, 2006.
Siddorn, J. R. and Furner, R.: An analytical stretching function that combines the best attributes of geopotential and terrain-following vertical coordinates, Ocean Model., 66, 1–13, 2013.
Sinha, B., Buitenhuis, E. T., Le Quéré, C., and Anderson, T. R.: Comparison of the emergent behavior of a complex ecosystem model in two ocean general circulation models, Prog. Oceanogr., 84, 204–224, 2010.
Skogen, M. D., Eilola, K., Hansen, J. L. S., Meier, H. E. M., Molchanov, M. S., and Ryabchenko, V. A.: Eutrophication status of the North Sea, Skagerrak, Kattegat and the Baltic Sea in present and future climates: A model study, J. Marine Syst., 132, 174–184, 2014.
Smaal, A. C., Schellekens, T., van Stralen, M. R., and Kromkamp, J. C.: Decrease of the carrying capacity of the Oosterschelde estuary (SW Delta, NL) for bivalve filter feeders due to overgrazing?, Aquaculture, 404, 28–34, 2013.
Stewart, I. J. and Martell, S. J.: Reconciling stock assessment paradigms to better inform fisheries management, ICES J. Mar. Sci., 72, 2187–2196, https://doi.org/10.1093/icesjms/fsv061, 2015.
Stips, A., Bolding, K., Pohlmann, T., and Burchard, H.: Simulating the temporal and spatial dynamics of the North Sea using the new model GETM (General Estuarine Transport Model), Ocean Dynam., 54, 266–283, 2004.
Storkey, D., Blockley, E. W., Furner, R., Guiavarc'h, C., Lea, D., Martin, M. J., Barciela, R. M., Hines, A., Hyder, P. and Siddorn, J. R.: Forecasting the ocean state using NEMO: The new FOAM system, Journal of Operational Oceanography, 3, 3–15, 2010.
Sutherland, W. J., Armstrong-Brown, S., Armsworth, P. R., Tom, B., Brickland, J., Campbell, C. D., Chamberlain, D. E., Cooke, A. I., Dulvy, N. K., Dusic, N. R., and Fitton, M.: The identification of 100 ecological questions of high policy relevance in the UK, J. Appl. Ecol., 43, 617–627, 2006.
Sykes, P. A. and Barciela, R. M.: Assessment and development of a sediment model within an operational system, J. Geophys. Res.-Oceans, 117, C04036, doi10.1029/2011JC007420, 2012.
Taylor, K. E.: Summarizing multiple aspects of model performance in a single diagram, J. Geophys. Res.-Atmos., 106, 7183–7192, 2001.
Tebaldi, C. and Knutti, R.: The use of the multi-model ensemble in probabilistic climate projections, Philos. T. R. Soc. A, 365, 2053–2075, 2007.
Thorpe, R. B., Le Quesne, W. J., Luxford, F., Collie, J. S., and Jennings, S.: Evaluation and management implications of uncertainty in a multispecies size-structured model of population and community responses to fishing, Methods Ecol. Evol., 6, 49–58, 2015.
Thyssen, M., Alvain, S., Lefèbvre, A., Dessailly, D., Rijkeboer, M., Guiselin, N., Creach, V., and Artigas, L.-F.: High-resolution analysis of a North Sea phytoplankton community structure based on in situ flow cytometry observations and potential implication for remote sensing, Biogeosciences, 12, 4051–4066, https://doi.org/10.5194/bg-12-4051-2015, 2015.
Uitz, J., Claustre, H., Morel, A., and Hooker, S. B.: Vertical distribution of phytoplankton communities in open ocean: An assessment based on surface chlorophyll, J. Geophys. Res.-Oceans, 111, C08005, https://doi.org/10.1029/2005JC003207, 2006.
Uitz, J., Huot, Y., Bruyant, F., Babin, M., and Claustre, H.: Relating phytoplankton photophysiological properties to community structure on large scales, Limnol. Oceanogr., 53, 614–630, 2008.
Van der Molen, J., Aldridge, J. N., Coughlan, C., Parker, E. R., Stephens, D., and Ruardij, P.: Modelling marine ecosystem response to climate change and trawling in the North Sea, Biogeochemistry, 113, 213–236, 2013.
Van der Molen, J., Smith, H. C. M., Lepper, P., Limpenny, S., and Rees, J.: Predicting the large-scale consequences of offshore wind turbine array development on a North Sea ecosystem, Cont. Shelf Res., 85, 60–72, 2014.
van der Molen, J., van Beek, J., Augustine, S., Vansteenbrugge, L., van Walraven, L., Langenberg, V., van der Veer, H. W., Hostens, K., Pitois, S., and Robbens, J.: Modelling survival and connectivity of Mnemiopsis leidyi in the south-western North Sea and Scheldt estuaries, Ocean Sci., 11, 405–424, https://doi.org/10.5194/os-11-405-2015, 2015.
van der Molen, J., Ruardij, P., and Greenwood, N.: Potential environmental impact of tidal energy extraction in the Pentland Firth at large spatial scales: results of a biogeochemical model, Biogeosciences, 13, 2593–2609, https://doi.org/10.5194/bg-13-2593-2016, 2016.
Van der Molen, J., Ruardij, P., and Greenwood, N.: A 3D SPM model for biogeochemical modelling, with application to the northwest European continental shelf, J. Sea Res., in press, 2017.
Van Leeuwen, S., Tett, P., Mills, D., and van der Molen, J.: Stratified and non-stratified areas in the North Sea: Long-term variability and biological and policy implications, J. Geophys. Res.-Oceans, 120, 4670–4686, 2015.
Van Leeuwen, S. M., van der Molen, J., Ruardij, P., Fernand, L., and Jickells, T.: Modelling the contribution of deep chlorophyll maxima to annual primary production in the North Sea, Biogeochemistry, 113, 137–152, 2013.
Veldhuis, M. J. W. and Admiraal, W.: Influence of phosphate depletion on the growth and colony formation of Phaeocystis pouchetii, Mar. Biol., 95, 47–54, 1987.
Vichi, M., Oddo, P., Zavatarelli, M., Coluccelli, A., Coppini, G., Celio, M., Fonda Umani, S., and Pinardi, N.: Calibration and validation of a one-dimensional complex marine biogeochemical flux model in different areas of the northern Adriatic shelf, Ann. Geophys., 21, 413–436, https://doi.org/10.5194/angeo-21-413-2003, 2003.
Vichi, M., Ruardij, P., and Baretta, J. W.: Link or sink: a modelling interpretation of the open Baltic biogeochemistry, Biogeosciences, 1, 79–100, https://doi.org/10.5194/bg-1-79-2004, 2004.
Vichi, M., Pinardi, N., and Masina, S.: A generalized model of pelagic biogeochemistry for the global ocean ecosystem. Part I: Theory, J. Marine Syst., 64, 89–109, 2007.
Wakelin, S. L., Artioli, Y., Butenschön, M., Allen, J. I., and Holt, J. T.: Modelling the combined impacts of climate change and direct anthropogenic drivers on the ecosystem of the northwest European continental shelf, J. Marine Syst., 152, 51–63, 2015a.
Wakelin, S., While, J., King, R., O'Dea, E., Holt, J., Furner, R., Siddorn, J., Martin, M., McEwan, R., Blockley, E., and Tinker, J.: Quality Information Document: North West European Shelf Reanalysis – NORTHWESTSHELF_REANALYSIS_PHYS_004_009 and NORTHWESTSHELF_REANALYSIS_BIO_004_011, EU Copernicus Marine Environment Monitoring Service, available at: http://marine.copernicus.eu/documents/QUID/CMEMS-NWS-QUID-004-009-011.pdf (last access: 2 March 2017), 2015b.
Ward, B. A., Schartau, M., Oschlies, A., Martin, A. P., Follows, M. J., and Anderson, T. R.: When is a biogeochemical model too complex? Objective model reduction and selection for North Atlantic time-series sites, Prog. Oceanogr., 116, 49–65, 2013.
Waters, J., Lea, D. J., Martin, M. J., Mirouze, I., Weaver, A., and While, J.: Implementing a variational data assimilation system in an operational 1/4 degree global ocean model, Q. J. Roy. Meteor. Soc., 141, 333–349, 2015.
Wollschläger, J., Wiltshire, K. H., Petersen, W., and Metfies, K.: Analysis of phytoplankton distribution and community structure in the German Bight with respect to the different size classes, J. Sea Res., 99, 83–96, 2015.
Xiao, Y. and Friedrichs, M. A. M.: Using biogeochemical data assimilation to assess the relative skill of multiple ecosystem models in the Mid-Atlantic Bight: effects of increasing the complexity of the planktonic food web, Biogeosciences, 11, 3015–3030, https://doi.org/10.5194/bg-11-3015-2014, 2014.
Short summary
This study presents a novel set of in situ observations of phytoplankton community structure for the North Sea. These observations were used to validate two physical–biogeochemical ocean model simulations, each of which used different variants of the widely used European Regional Seas Ecosystem Model (ERSEM). The results suggest the ability of the models to reproduce the observed phytoplankton community structure was dependent on the details of the biogeochemical model parameterizations used.
This study presents a novel set of in situ observations of phytoplankton community structure for...
Altmetrics
Final-revised paper
Preprint