Articles | Volume 17, issue 24
https://doi.org/10.5194/bg-17-6271-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-17-6271-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
14 Dec 2020
Research article |
| 14 Dec 2020
| 14 Dec 2020
Potential bioavailability of organic matter from atmospheric particles to marine heterotrophic bacteria
Kahina Djaoudi
CORRESPONDING AUTHOR
Aix-Marseille Univ., Université de Toulon, CNRS, IRD, MIO UM 110,
13288, Marseille, France
Molecular and Cellular Biology, The University of Arizona, Tucson,
USA
France Van Wambeke
Aix-Marseille Univ., Université de Toulon, CNRS, IRD, MIO UM 110,
13288, Marseille, France
Aude Barani
Aix-Marseille Univ., Université de Toulon, CNRS, IRD, MIO UM 110,
13288, Marseille, France
Nagib Bhairy
Aix-Marseille Univ., Université de Toulon, CNRS, IRD, MIO UM 110,
13288, Marseille, France
Servanne Chevaillier
LISA, UMR7583, Université de Paris, Université
Paris-Est-Créteil, Institut Pierre Simon Laplace (IPSL), Créteil,
France
Karine Desboeufs
LISA, UMR7583, Université de Paris, Université
Paris-Est-Créteil, Institut Pierre Simon Laplace (IPSL), Créteil,
France
Sandra Nunige
Aix-Marseille Univ., Université de Toulon, CNRS, IRD, MIO UM 110,
13288, Marseille, France
Mohamed Labiadh
IRA (Institut des Régions Arides) de Médenine, El
Fjé4119, Médenine, Tunisia
Thierry Henry des Tureaux
iEES Paris (Institut d'Ecologie et des Sciences de l'Environnement
de Paris), UMR IRD 242, Université Paris Est Créteil–Sorbonne
Université–CNRS–INRA–Université de Paris, 93143 Bondy,
France
Dominique Lefèvre
Aix-Marseille Univ., Université de Toulon, CNRS, IRD, MIO UM 110,
13288, Marseille, France
Amel Nouara
Aix-Marseille Univ., Université de Toulon, CNRS, IRD, MIO UM 110,
13288, Marseille, France
Christos Panagiotopoulos
Aix-Marseille Univ., Université de Toulon, CNRS, IRD, MIO UM 110,
13288, Marseille, France
Marc Tedetti
Aix-Marseille Univ., Université de Toulon, CNRS, IRD, MIO UM 110,
13288, Marseille, France
Elvira Pulido-Villena
Aix-Marseille Univ., Université de Toulon, CNRS, IRD, MIO UM 110,
13288, Marseille, France
Related authors
Elvira Pulido-Villena, Karine Desboeufs, Kahina Djaoudi, France Van Wambeke, Stéphanie Barrillon, Andrea Doglioli, Anne Petrenko, Vincent Taillandier, Franck Fu, Tiphanie Gaillard, Sophie Guasco, Sandra Nunige, Sylvain Triquet, and Cécile Guieu
Biogeosciences, 18, 5871–5889, https://doi.org/10.5194/bg-18-5871-2021, https://doi.org/10.5194/bg-18-5871-2021, 2021
Short summary
Short summary
We report on phosphorus dynamics in the surface layer of the Mediterranean Sea. Highly sensitive phosphate measurements revealed vertical gradients above the phosphacline. The relative contribution of diapycnal fluxes to total external supply of phosphate to the mixed layer decreased towards the east, where atmospheric deposition dominated. Taken together, external sources of phosphate contributed little to total supply, which was mainly sustained by enzymatic hydrolysis of organic phosphorus.
Frédéric Gazeau, Céline Ridame, France Van Wambeke, Samir Alliouane, Christian Stolpe, Jean-Olivier Irisson, Sophie Marro, Jean-Michel Grisoni, Guillaume De Liège, Sandra Nunige, Kahina Djaoudi, Elvira Pulido-Villena, Julie Dinasquet, Ingrid Obernosterer, Philippe Catala, and Cécile Guieu
Biogeosciences, 18, 5011–5034, https://doi.org/10.5194/bg-18-5011-2021, https://doi.org/10.5194/bg-18-5011-2021, 2021
Short summary
Short summary
This paper shows that the impacts of Saharan dust deposition in different Mediterranean basins are as strong as those observed in coastal waters but differed substantially between the three tested stations, differences attributed to variable initial metabolic states. A stronger impact of warming and acidification on mineralization suggests a decreased capacity of Mediterranean surface communities to sequester CO2 following the deposition of atmospheric particles in the coming decades.
France Van Wambeke, Elvira Pulido, Philippe Catala, Julie Dinasquet, Kahina Djaoudi, Anja Engel, Marc Garel, Sophie Guasco, Barbara Marie, Sandra Nunige, Vincent Taillandier, Birthe Zäncker, and Christian Tamburini
Biogeosciences, 18, 2301–2323, https://doi.org/10.5194/bg-18-2301-2021, https://doi.org/10.5194/bg-18-2301-2021, 2021
Short summary
Short summary
Michaelis–Menten kinetics were determined for alkaline phosphatase, aminopeptidase and β-glucosidase in the Mediterranean Sea. Although the ectoenzymatic-hydrolysis contribution to heterotrophic prokaryotic needs was high in terms of N, it was low in terms of C. This study points out the biases in interpretation of the relative differences in activities among the three tested enzymes in regard to the choice of added concentrations of fluorogenic substrates.
Nicolas Metzl, Jonathan Fin, Claire Lo Monaco, Claude Mignon, Samir Alliouane, Bruno Bombled, Jacqueline Boutin, Yann Bozec, Steeve Comeau, Pascal Conan, Laurent Coppola, Pascale Cuet, Eva Ferreira, Jean-Pierre Gattuso, Frédéric Gazeau, Catherine Goyet, Emilie Grossteffan, Bruno Lansard, Dominique Lefèvre, Nathalie Lefèvre, Coraline Leseurre, Sébastien Petton, Mireille Pujo-Pay, Christophe Rabouille, Gilles Reverdin, Céline Ridame, Peggy Rimmelin-Maury, Jean-François Ternon, Franck Touratier, Aline Tribollet, Thibaut Wagener, and Cathy Wimart-Rousseau
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-464, https://doi.org/10.5194/essd-2024-464, 2024
Preprint under review for ESSD
Short summary
Short summary
This work presents a new synthesis of 67 000 total alkalinity and total dissolved inorganic carbon observations obtained between 1993 and 2023 in the global ocean, coastal zones and the Mediterranean Sea. We describe the data assemblage and associated quality control and discuss some potential uses of this dataset. The dataset is provided in a single format and include the quality flag for each sample.
Mathilde Dugenne, Marco Corrales-Ugalde, Jessica Y. Luo, Rainer Kiko, Todd D. O'Brien, Jean-Olivier Irisson, Fabien Lombard, Lars Stemmann, Charles Stock, Clarissa R. Anderson, Marcel Babin, Nagib Bhairy, Sophie Bonnet, Francois Carlotti, Astrid Cornils, E. Taylor Crockford, Patrick Daniel, Corinne Desnos, Laetitia Drago, Amanda Elineau, Alexis Fischer, Nina Grandrémy, Pierre-Luc Grondin, Lionel Guidi, Cecile Guieu, Helena Hauss, Kendra Hayashi, Jenny A. Huggett, Laetitia Jalabert, Lee Karp-Boss, Kasia M. Kenitz, Raphael M. Kudela, Magali Lescot, Claudie Marec, Andrew McDonnell, Zoe Mériguet, Barbara Niehoff, Margaux Noyon, Thelma Panaïotis, Emily Peacock, Marc Picheral, Emilie Riquier, Collin Roesler, Jean-Baptiste Romagnan, Heidi M. Sosik, Gretchen Spencer, Jan Taucher, Chloé Tilliette, and Marion Vilain
Earth Syst. Sci. Data, 16, 2971–2999, https://doi.org/10.5194/essd-16-2971-2024, https://doi.org/10.5194/essd-16-2971-2024, 2024
Short summary
Short summary
Plankton and particles influence carbon cycling and energy flow in marine ecosystems. We used three types of novel plankton imaging systems to obtain size measurements from a range of plankton and particle sizes and across all major oceans. Data were compiled and cross-calibrated from many thousands of images, showing seasonal and spatial changes in particle size structure in different ocean basins. These datasets form the first release of the Pelagic Size Structure database (PSSdb).
France Van Wambeke, Pascal Conan, Mireille Pujo-Pay, Vincent Taillandier, Olivier Crispi, Alexandra Pavlidou, Sandra Nunige, Morgane Didry, Christophe Salmeron, and Elvira Pulido-Villena
Biogeosciences, 21, 2621–2640, https://doi.org/10.5194/bg-21-2621-2024, https://doi.org/10.5194/bg-21-2621-2024, 2024
Short summary
Short summary
Phosphomonoesterase (PME) and phosphodiesterase (PDE) activities over the epipelagic zone are described in the eastern Mediterranean Sea in winter and autumn. The types of concentration kinetics obtained for PDE (saturation at 50 µM, high Km, high turnover times) compared to those of PME (saturation at 1 µM, low Km, low turnover times) are discussed in regard to the possible inequal distribution of PDE and PME in the size continuum of organic material and accessibility to phosphodiesters.
Karine Desboeufs, Paola Formenti, Raquel Torres-Sánchez, Kerstin Schepanski, Jean-Pierre Chaboureau, Hendrik Andersen, Jan Cermak, Stefanie Feuerstein, Benoit Laurent, Danitza Klopper, Andreas Namwoonde, Mathieu Cazaunau, Servanne Chevaillier, Anaïs Feron, Cécile Mirande-Bret, Sylvain Triquet, and Stuart J. Piketh
Atmos. Chem. Phys., 24, 1525–1541, https://doi.org/10.5194/acp-24-1525-2024, https://doi.org/10.5194/acp-24-1525-2024, 2024
Short summary
Short summary
This study investigates the fractional solubility of iron (Fe) in dust particles along the coast of Namibia, a critical region for the atmospheric Fe supply of the South Atlantic Ocean. Our results suggest a possible two-way interplay whereby marine biogenic emissions from the coastal marine ecosystems into the atmosphere would increase the solubility of Fe-bearing dust by photo-reduction processes. The subsequent deposition of soluble Fe could act to further enhance marine biogenic emissions.
Nicolas Metzl, Jonathan Fin, Claire Lo Monaco, Claude Mignon, Samir Alliouane, David Antoine, Guillaume Bourdin, Jacqueline Boutin, Yann Bozec, Pascal Conan, Laurent Coppola, Frédéric Diaz, Eric Douville, Xavier Durrieu de Madron, Jean-Pierre Gattuso, Frédéric Gazeau, Melek Golbol, Bruno Lansard, Dominique Lefèvre, Nathalie Lefèvre, Fabien Lombard, Férial Louanchi, Liliane Merlivat, Léa Olivier, Anne Petrenko, Sébastien Petton, Mireille Pujo-Pay, Christophe Rabouille, Gilles Reverdin, Céline Ridame, Aline Tribollet, Vincenzo Vellucci, Thibaut Wagener, and Cathy Wimart-Rousseau
Earth Syst. Sci. Data, 16, 89–120, https://doi.org/10.5194/essd-16-89-2024, https://doi.org/10.5194/essd-16-89-2024, 2024
Short summary
Short summary
This work presents a synthesis of 44 000 total alkalinity and dissolved inorganic carbon observations obtained between 1993 and 2022 in the Global Ocean and the Mediterranean Sea at the surface and in the water column. Seawater samples were measured using the same method and calibrated with international Certified Reference Material. We describe the data assemblage, quality control and some potential uses of this dataset.
Caroline Ulses, Claude Estournel, Patrick Marsaleix, Karline Soetaert, Marine Fourrier, Laurent Coppola, Dominique Lefèvre, Franck Touratier, Catherine Goyet, Véronique Guglielmi, Fayçal Kessouri, Pierre Testor, and Xavier Durrieu de Madron
Biogeosciences, 20, 4683–4710, https://doi.org/10.5194/bg-20-4683-2023, https://doi.org/10.5194/bg-20-4683-2023, 2023
Short summary
Short summary
Deep convection plays a key role in the circulation, thermodynamics, and biogeochemical cycles in the Mediterranean Sea, considered to be a hotspot of biodiversity and climate change. In this study, we investigate the seasonal and annual budget of dissolved inorganic carbon in the deep-convection area of the northwestern Mediterranean Sea.
Lucille Barré, Frédéric Diaz, Thibaut Wagener, France Van Wambeke, Camille Mazoyer, Christophe Yohia, and Christel Pinazo
Geosci. Model Dev., 16, 6701–6739, https://doi.org/10.5194/gmd-16-6701-2023, https://doi.org/10.5194/gmd-16-6701-2023, 2023
Short summary
Short summary
While several studies have shown that mixotrophs play a crucial role in the carbon cycle, the impact of environmental forcings on their dynamics remains poorly investigated. Using a biogeochemical model that considers mixotrophs, we study the impact of light and nutrient concentration on the ecosystem composition in a highly dynamic Mediterranean coastal area: the Bay of Marseille. We show that mixotrophs cope better with oligotrophic conditions compared to strict auto- and heterotrophs.
Thomas Audoux, Benoit Laurent, Karine Desboeufs, Gael Noyalet, Franck Maisonneuve, Olivier Lauret, and Servanne Chevaillier
Atmos. Chem. Phys., 23, 13485–13503, https://doi.org/10.5194/acp-23-13485-2023, https://doi.org/10.5194/acp-23-13485-2023, 2023
Short summary
Short summary
In the Paris region, a campaign was conducted to study wet deposition of aerosol particles during rainfall events. Simultaneous measurements of aerosol and wet deposition allowed us to discuss their transfer from the atmosphere to rain. Chemical evolution within events revealed meteorology, atmospheric conditions and local vs. long range sources as key factors. This study highlights the variability of wet deposition and the need to consider event-specific factors to understand its mechanisms.
Stéphanie Barrillon, Robin Fuchs, Anne A. Petrenko, Caroline Comby, Anthony Bosse, Christophe Yohia, Jean-Luc Fuda, Nagib Bhairy, Frédéric Cyr, Andrea M. Doglioli, Gérald Grégori, Roxane Tzortzis, Francesco d'Ovidio, and Melilotus Thyssen
Biogeosciences, 20, 141–161, https://doi.org/10.5194/bg-20-141-2023, https://doi.org/10.5194/bg-20-141-2023, 2023
Short summary
Short summary
Extreme weather events can have a major impact on ocean physics and biogeochemistry, but their study is challenging. In May 2019, an intense storm occurred in the north-western Mediterranean Sea, during which in situ multi-platform measurements were performed. The results show a strong impact on the surface phytoplankton, highlighting the need for high-resolution measurements coupling physics and biology during these violent events that may become more common in the context of global change.
Flavienne Bruyant, Rémi Amiraux, Marie-Pier Amyot, Philippe Archambault, Lise Artigue, Lucas Barbedo de Freitas, Guislain Bécu, Simon Bélanger, Pascaline Bourgain, Annick Bricaud, Etienne Brouard, Camille Brunet, Tonya Burgers, Danielle Caleb, Katrine Chalut, Hervé Claustre, Véronique Cornet-Barthaux, Pierre Coupel, Marine Cusa, Fanny Cusset, Laeticia Dadaglio, Marty Davelaar, Gabrièle Deslongchamps, Céline Dimier, Julie Dinasquet, Dany Dumont, Brent Else, Igor Eulaers, Joannie Ferland, Gabrielle Filteau, Marie-Hélène Forget, Jérome Fort, Louis Fortier, Martí Galí, Morgane Gallinari, Svend-Erik Garbus, Nicole Garcia, Catherine Gérikas Ribeiro, Colline Gombault, Priscilla Gourvil, Clémence Goyens, Cindy Grant, Pierre-Luc Grondin, Pascal Guillot, Sandrine Hillion, Rachel Hussherr, Fabien Joux, Hannah Joy-Warren, Gabriel Joyal, David Kieber, Augustin Lafond, José Lagunas, Patrick Lajeunesse, Catherine Lalande, Jade Larivière, Florence Le Gall, Karine Leblanc, Mathieu Leblanc, Justine Legras, Keith Lévesque, Kate-M. Lewis, Edouard Leymarie, Aude Leynaert, Thomas Linkowski, Martine Lizotte, Adriana Lopes dos Santos, Claudie Marec, Dominique Marie, Guillaume Massé, Philippe Massicotte, Atsushi Matsuoka, Lisa A. Miller, Sharif Mirshak, Nathalie Morata, Brivaela Moriceau, Philippe-Israël Morin, Simon Morisset, Anders Mosbech, Alfonso Mucci, Gabrielle Nadaï, Christian Nozais, Ingrid Obernosterer, Thimoté Paire, Christos Panagiotopoulos, Marie Parenteau, Noémie Pelletier, Marc Picheral, Bernard Quéguiner, Patrick Raimbault, Joséphine Ras, Eric Rehm, Llúcia Ribot Lacosta, Jean-François Rontani, Blanche Saint-Béat, Julie Sansoulet, Noé Sardet, Catherine Schmechtig, Antoine Sciandra, Richard Sempéré, Caroline Sévigny, Jordan Toullec, Margot Tragin, Jean-Éric Tremblay, Annie-Pier Trottier, Daniel Vaulot, Anda Vladoiu, Lei Xue, Gustavo Yunda-Guarin, and Marcel Babin
Earth Syst. Sci. Data, 14, 4607–4642, https://doi.org/10.5194/essd-14-4607-2022, https://doi.org/10.5194/essd-14-4607-2022, 2022
Short summary
Short summary
This paper presents a dataset acquired during a research cruise held in Baffin Bay in 2016. We observed that the disappearance of sea ice in the Arctic Ocean increases both the length and spatial extent of the phytoplankton growth season. In the future, this will impact the food webs on which the local populations depend for their food supply and fisheries. This dataset will provide insight into quantifying these impacts and help the decision-making process for policymakers.
Laurie Boithias, Olivier Ribolzi, Emma Rochelle-Newall, Chanthanousone Thammahacksa, Paty Nakhle, Bounsamay Soulileuth, Anne Pando-Bahuon, Keooudone Latsachack, Norbert Silvera, Phabvilay Sounyafong, Khampaseuth Xayyathip, Rosalie Zimmermann, Sayaphet Rattanavong, Priscia Oliva, Thomas Pommier, Olivier Evrard, Sylvain Huon, Jean Causse, Thierry Henry-des-Tureaux, Oloth Sengtaheuanghoung, Nivong Sipaseuth, and Alain Pierret
Earth Syst. Sci. Data, 14, 2883–2894, https://doi.org/10.5194/essd-14-2883-2022, https://doi.org/10.5194/essd-14-2883-2022, 2022
Short summary
Short summary
Fecal pathogens in surface waters may threaten human health, especially in developing countries. The Escherichia coli (E. coli) database is organized in three datasets and includes 1602 records from 31 sampling stations located within the Mekong River basin in Lao PDR. Data have been used to identify the drivers of E. coli dissemination across tropical catchments, including during floods. Data may be further used to interpret new variables or to map the health risk posed by fecal pathogens.
Julie Dinasquet, Estelle Bigeard, Frédéric Gazeau, Farooq Azam, Cécile Guieu, Emilio Marañón, Céline Ridame, France Van Wambeke, Ingrid Obernosterer, and Anne-Claire Baudoux
Biogeosciences, 19, 1303–1319, https://doi.org/10.5194/bg-19-1303-2022, https://doi.org/10.5194/bg-19-1303-2022, 2022
Short summary
Short summary
Saharan dust deposition of nutrients and trace metals is crucial to microbes in the Mediterranean Sea. Here, we tested the response of microbial and viral communities to simulated dust deposition under present and future conditions of temperature and pH. Overall, the effect of the deposition was dependent on the initial microbial assemblage, and future conditions will intensify microbial responses. We observed effects on trophic interactions, cascading all the way down to viral processes.
Karine Desboeufs, Franck Fu, Matthieu Bressac, Antonio Tovar-Sánchez, Sylvain Triquet, Jean-François Doussin, Chiara Giorio, Patrick Chazette, Julie Disnaquet, Anaïs Feron, Paola Formenti, Franck Maisonneuve, Araceli Rodríguez-Romero, Pascal Zapf, François Dulac, and Cécile Guieu
Atmos. Chem. Phys., 22, 2309–2332, https://doi.org/10.5194/acp-22-2309-2022, https://doi.org/10.5194/acp-22-2309-2022, 2022
Short summary
Short summary
This article reports the first concurrent sampling of wet deposition samples and surface seawater and was performed during the PEACETIME cruise in the remote Mediterranean (May–June 2017). Through the chemical composition of trace metals (TMs) in these samples, it emphasizes the decrease of atmospheric metal pollution in this area during the last few decades and the critical role of wet deposition as source of TMs for Mediterranean surface seawater, especially for intense dust deposition events.
Céline Ridame, Julie Dinasquet, Søren Hallstrøm, Estelle Bigeard, Lasse Riemann, France Van Wambeke, Matthieu Bressac, Elvira Pulido-Villena, Vincent Taillandier, Fréderic Gazeau, Antonio Tovar-Sanchez, Anne-Claire Baudoux, and Cécile Guieu
Biogeosciences, 19, 415–435, https://doi.org/10.5194/bg-19-415-2022, https://doi.org/10.5194/bg-19-415-2022, 2022
Short summary
Short summary
We show that in the Mediterranean Sea spatial variability in N2 fixation is related to the diazotrophic community composition reflecting different nutrient requirements among species. Nutrient supply by Saharan dust is of great importance to diazotrophs, as shown by the strong stimulation of N2 fixation after a simulated dust event under present and future climate conditions; the magnitude of stimulation depends on the degree of limitation related to the diazotrophic community composition.
Roxane Tzortzis, Andrea M. Doglioli, Stéphanie Barrillon, Anne A. Petrenko, Francesco d'Ovidio, Lloyd Izard, Melilotus Thyssen, Ananda Pascual, Bàrbara Barceló-Llull, Frédéric Cyr, Marc Tedetti, Nagib Bhairy, Pierre Garreau, Franck Dumas, and Gérald Gregori
Biogeosciences, 18, 6455–6477, https://doi.org/10.5194/bg-18-6455-2021, https://doi.org/10.5194/bg-18-6455-2021, 2021
Short summary
Short summary
This work analyzes an original high-resolution data set collected in the Mediterranean Sea. The major result is the impact of a fine-scale frontal structure on the distribution of phytoplankton groups, in an area of moderate energy with oligotrophic conditions. Our results provide an in situ confirmation of the findings obtained by previous modeling studies and remote sensing about the structuring effect of the fine-scale ocean dynamics on the structure of the phytoplankton community.
Matthieu Bressac, Thibaut Wagener, Nathalie Leblond, Antonio Tovar-Sánchez, Céline Ridame, Vincent Taillandier, Samuel Albani, Sophie Guasco, Aurélie Dufour, Stéphanie H. M. Jacquet, François Dulac, Karine Desboeufs, and Cécile Guieu
Biogeosciences, 18, 6435–6453, https://doi.org/10.5194/bg-18-6435-2021, https://doi.org/10.5194/bg-18-6435-2021, 2021
Short summary
Short summary
Phytoplankton growth is limited by the availability of iron in about 50 % of the ocean. Atmospheric deposition of desert dust represents a key source of iron. Here, we present direct observations of dust deposition in the Mediterranean Sea. A key finding is that the input of iron from dust primarily occurred in the deep ocean, while previous studies mainly focused on the ocean surface. This new insight will enable us to better represent controls on global marine productivity in models.
Yangjunjie Xu-Yang, Rémi Losno, Fabrice Monna, Jean-Louis Rajot, Mohamed Labiadh, Gilles Bergametti, and Béatrice Marticorena
Atmos. Meas. Tech., 14, 7657–7680, https://doi.org/10.5194/amt-14-7657-2021, https://doi.org/10.5194/amt-14-7657-2021, 2021
Short summary
Short summary
Suspended particles in air (aerosols) are sampled with a pump drawing ambient air through a filter. The air inlet must be carefully designed to control the size of sampled particles and to reject the largest ones (> 10 µm). A low-cost sampling head for determination of the finest fraction of aerosol (> 10 µm in diameter) is presented. Compositional data analysis (CoDA) tools are extensively used here to demonstrate similarity between the low-cost sampling head and other existing systems.
Stéphanie H. M. Jacquet, Christian Tamburini, Marc Garel, Aurélie Dufour, France Van Vambeke, Frédéric A. C. Le Moigne, Nagib Bhairy, and Sophie Guasco
Biogeosciences, 18, 5891–5902, https://doi.org/10.5194/bg-18-5891-2021, https://doi.org/10.5194/bg-18-5891-2021, 2021
Short summary
Short summary
We compared carbon remineralization rates (MRs) in the western and central Mediterranean Sea in late spring during the PEACETIME cruise, as assessed using the barium tracer. We reported higher and deeper (up to 1000 m depth) MRs in the western basin, potentially sustained by an additional particle export event driven by deep convection. The central basin is the site of a mosaic of blooming and non-blooming water masses and showed lower MRs that were restricted to the upper mesopelagic layer.
Elvira Pulido-Villena, Karine Desboeufs, Kahina Djaoudi, France Van Wambeke, Stéphanie Barrillon, Andrea Doglioli, Anne Petrenko, Vincent Taillandier, Franck Fu, Tiphanie Gaillard, Sophie Guasco, Sandra Nunige, Sylvain Triquet, and Cécile Guieu
Biogeosciences, 18, 5871–5889, https://doi.org/10.5194/bg-18-5871-2021, https://doi.org/10.5194/bg-18-5871-2021, 2021
Short summary
Short summary
We report on phosphorus dynamics in the surface layer of the Mediterranean Sea. Highly sensitive phosphate measurements revealed vertical gradients above the phosphacline. The relative contribution of diapycnal fluxes to total external supply of phosphate to the mixed layer decreased towards the east, where atmospheric deposition dominated. Taken together, external sources of phosphate contributed little to total supply, which was mainly sustained by enzymatic hydrolysis of organic phosphorus.
France Van Wambeke, Vincent Taillandier, Karine Desboeufs, Elvira Pulido-Villena, Julie Dinasquet, Anja Engel, Emilio Marañón, Céline Ridame, and Cécile Guieu
Biogeosciences, 18, 5699–5717, https://doi.org/10.5194/bg-18-5699-2021, https://doi.org/10.5194/bg-18-5699-2021, 2021
Short summary
Short summary
Simultaneous in situ measurements of (dry and wet) atmospheric deposition and biogeochemical stocks and fluxes in the sunlit waters of the open Mediterranean Sea revealed complex physical and biological processes occurring within the mixed layer. Nitrogen (N) budgets were computed to compare the sources and sinks of N in the mixed layer. The transitory effect observed after a wet dust deposition impacted the microbial food web down to the deep chlorophyll maximum.
Frédéric Gazeau, France Van Wambeke, Emilio Marañón, Maria Pérez-Lorenzo, Samir Alliouane, Christian Stolpe, Thierry Blasco, Nathalie Leblond, Birthe Zäncker, Anja Engel, Barbara Marie, Julie Dinasquet, and Cécile Guieu
Biogeosciences, 18, 5423–5446, https://doi.org/10.5194/bg-18-5423-2021, https://doi.org/10.5194/bg-18-5423-2021, 2021
Short summary
Short summary
Our study shows that the impact of dust deposition on primary production depends on the initial composition and metabolic state of the tested community and is constrained by the amount of nutrients added, to sustain both the fast response of heterotrophic prokaryotes and the delayed one of phytoplankton. Under future environmental conditions, heterotrophic metabolism will be more impacted than primary production, therefore reducing the capacity of surface waters to sequester anthropogenic CO2.
Frédéric Gazeau, Céline Ridame, France Van Wambeke, Samir Alliouane, Christian Stolpe, Jean-Olivier Irisson, Sophie Marro, Jean-Michel Grisoni, Guillaume De Liège, Sandra Nunige, Kahina Djaoudi, Elvira Pulido-Villena, Julie Dinasquet, Ingrid Obernosterer, Philippe Catala, and Cécile Guieu
Biogeosciences, 18, 5011–5034, https://doi.org/10.5194/bg-18-5011-2021, https://doi.org/10.5194/bg-18-5011-2021, 2021
Short summary
Short summary
This paper shows that the impacts of Saharan dust deposition in different Mediterranean basins are as strong as those observed in coastal waters but differed substantially between the three tested stations, differences attributed to variable initial metabolic states. A stronger impact of warming and acidification on mineralization suggests a decreased capacity of Mediterranean surface communities to sequester CO2 following the deposition of atmospheric particles in the coming decades.
Evelyn Freney, Karine Sellegri, Alessia Nicosia, Leah R. Williams, Matteo Rinaldi, Jonathan T. Trueblood, André S. H. Prévôt, Melilotus Thyssen, Gérald Grégori, Nils Haëntjens, Julie Dinasquet, Ingrid Obernosterer, France Van Wambeke, Anja Engel, Birthe Zäncker, Karine Desboeufs, Eija Asmi, Hilkka Timonen, and Cécile Guieu
Atmos. Chem. Phys., 21, 10625–10641, https://doi.org/10.5194/acp-21-10625-2021, https://doi.org/10.5194/acp-21-10625-2021, 2021
Short summary
Short summary
In this work, we present observations of the organic aerosol content in primary sea spray aerosols (SSAs) continuously generated along a 5-week cruise in the Mediterranean. This information is combined with seawater biogeochemical properties also measured continuously along the ship track to develop a number of parametrizations that can be used in models to determine SSA organic content in oligotrophic waters that represent 60 % of the oceans from commonly measured seawater variables.
Matthieu Roy-Barman, Lorna Foliot, Eric Douville, Nathalie Leblond, Fréderic Gazeau, Matthieu Bressac, Thibaut Wagener, Céline Ridame, Karine Desboeufs, and Cécile Guieu
Biogeosciences, 18, 2663–2678, https://doi.org/10.5194/bg-18-2663-2021, https://doi.org/10.5194/bg-18-2663-2021, 2021
Short summary
Short summary
The release of insoluble elements such as aluminum (Al), iron (Fe), rare earth elements (REEs), thorium (Th) and protactinium (Pa) when Saharan dust falls over the Mediterranean Sea was studied during tank experiments under present and future climate conditions. Each element exhibited different dissolution kinetics and dissolution fractions (always lower than a few percent). Changes in temperature and/or pH under greenhouse conditions lead to a lower Th release and a higher light REE release.
Philippe Massicotte, Rainer M. W. Amon, David Antoine, Philippe Archambault, Sergio Balzano, Simon Bélanger, Ronald Benner, Dominique Boeuf, Annick Bricaud, Flavienne Bruyant, Gwenaëlle Chaillou, Malik Chami, Bruno Charrière, Jing Chen, Hervé Claustre, Pierre Coupel, Nicole Delsaut, David Doxaran, Jens Ehn, Cédric Fichot, Marie-Hélène Forget, Pingqing Fu, Jonathan Gagnon, Nicole Garcia, Beat Gasser, Jean-François Ghiglione, Gaby Gorsky, Michel Gosselin, Priscillia Gourvil, Yves Gratton, Pascal Guillot, Hermann J. Heipieper, Serge Heussner, Stanford B. Hooker, Yannick Huot, Christian Jeanthon, Wade Jeffrey, Fabien Joux, Kimitaka Kawamura, Bruno Lansard, Edouard Leymarie, Heike Link, Connie Lovejoy, Claudie Marec, Dominique Marie, Johannie Martin, Jacobo Martín, Guillaume Massé, Atsushi Matsuoka, Vanessa McKague, Alexandre Mignot, William L. Miller, Juan-Carlos Miquel, Alfonso Mucci, Kaori Ono, Eva Ortega-Retuerta, Christos Panagiotopoulos, Tim Papakyriakou, Marc Picheral, Louis Prieur, Patrick Raimbault, Joséphine Ras, Rick A. Reynolds, André Rochon, Jean-François Rontani, Catherine Schmechtig, Sabine Schmidt, Richard Sempéré, Yuan Shen, Guisheng Song, Dariusz Stramski, Eri Tachibana, Alexandre Thirouard, Imma Tolosa, Jean-Éric Tremblay, Mickael Vaïtilingom, Daniel Vaulot, Frédéric Vaultier, John K. Volkman, Huixiang Xie, Guangming Zheng, and Marcel Babin
Earth Syst. Sci. Data, 13, 1561–1592, https://doi.org/10.5194/essd-13-1561-2021, https://doi.org/10.5194/essd-13-1561-2021, 2021
Short summary
Short summary
The MALINA oceanographic expedition was conducted in the Mackenzie River and the Beaufort Sea systems. The sampling was performed across seven shelf–basin transects to capture the meridional gradient between the estuary and the open ocean. The main goal of this research program was to better understand how processes such as primary production are influencing the fate of organic matter originating from the surrounding terrestrial landscape during its transition toward the Arctic Ocean.
France Van Wambeke, Elvira Pulido, Philippe Catala, Julie Dinasquet, Kahina Djaoudi, Anja Engel, Marc Garel, Sophie Guasco, Barbara Marie, Sandra Nunige, Vincent Taillandier, Birthe Zäncker, and Christian Tamburini
Biogeosciences, 18, 2301–2323, https://doi.org/10.5194/bg-18-2301-2021, https://doi.org/10.5194/bg-18-2301-2021, 2021
Short summary
Short summary
Michaelis–Menten kinetics were determined for alkaline phosphatase, aminopeptidase and β-glucosidase in the Mediterranean Sea. Although the ectoenzymatic-hydrolysis contribution to heterotrophic prokaryotic needs was high in terms of N, it was low in terms of C. This study points out the biases in interpretation of the relative differences in activities among the three tested enzymes in regard to the choice of added concentrations of fluorogenic substrates.
Stéphanie H. M. Jacquet, Dominique Lefèvre, Christian Tamburini, Marc Garel, Frédéric A. C. Le Moigne, Nagib Bhairy, and Sophie Guasco
Biogeosciences, 18, 2205–2212, https://doi.org/10.5194/bg-18-2205-2021, https://doi.org/10.5194/bg-18-2205-2021, 2021
Short summary
Short summary
We present new data concerning the relation between biogenic barium (Baxs, a tracer of carbon remineralization at mesopelagic depths), O2 consumption and prokaryotic heterotrophic production (PHP) in the Mediterranean Sea. The purpose of this paper is to improve our understanding of the relation between Baxs, PHP and O2 and to test the validity of the Dehairs transfer function in the Mediterranean Sea. This relation has never been tested in the Mediterranean Sea.
Emilio Marañón, France Van Wambeke, Julia Uitz, Emmanuel S. Boss, Céline Dimier, Julie Dinasquet, Anja Engel, Nils Haëntjens, María Pérez-Lorenzo, Vincent Taillandier, and Birthe Zäncker
Biogeosciences, 18, 1749–1767, https://doi.org/10.5194/bg-18-1749-2021, https://doi.org/10.5194/bg-18-1749-2021, 2021
Short summary
Short summary
The concentration of chlorophyll is commonly used as an indicator of the abundance of photosynthetic plankton (phytoplankton) in lakes and oceans. Our study investigates why a deep chlorophyll maximum, located near the bottom of the upper, illuminated layer develops in the Mediterranean Sea. We find that the acclimation of cells to low light is the main mechanism involved and that this deep maximum represents also a maximum in the biomass and carbon fixation activity of phytoplankton.
Caroline Ulses, Claude Estournel, Marine Fourrier, Laurent Coppola, Fayçal Kessouri, Dominique Lefèvre, and Patrick Marsaleix
Biogeosciences, 18, 937–960, https://doi.org/10.5194/bg-18-937-2021, https://doi.org/10.5194/bg-18-937-2021, 2021
Short summary
Short summary
We analyse the seasonal cycle of O2 and estimate an annual O2 budget in the north-western Mediterranean deep-convection region, using a numerical model. We show that this region acts as a large sink of atmospheric O2 and as a major source of O2 for the western Mediterranean Sea. The decrease in the deep convection intensity predicted in recent projections may have important consequences on the overall uptake of O2 in the Mediterranean Sea and on the O2 exchanges with the Atlantic Ocean.
Katixa Lajaunie-Salla, Frédéric Diaz, Cathy Wimart-Rousseau, Thibaut Wagener, Dominique Lefèvre, Christophe Yohia, Irène Xueref-Remy, Brian Nathan, Alexandre Armengaud, and Christel Pinazo
Geosci. Model Dev., 14, 295–321, https://doi.org/10.5194/gmd-14-295-2021, https://doi.org/10.5194/gmd-14-295-2021, 2021
Short summary
Short summary
A biogeochemical model of planktonic food webs including a carbonate balance module is applied in the Bay of Marseille (France) to represent the carbon marine cycle expected to change in the future owing to significant increases in anthropogenic emissions of CO2. The model correctly simulates the ranges and seasonal dynamics of most variables of the carbonate system (pH). This study shows that external physical forcings have an important impact on the carbonate equilibrium in this coastal area.
Danitza Klopper, Paola Formenti, Andreas Namwoonde, Mathieu Cazaunau, Servanne Chevaillier, Anaïs Feron, Cécile Gaimoz, Patrick Hease, Fadi Lahmidi, Cécile Mirande-Bret, Sylvain Triquet, Zirui Zeng, and Stuart J. Piketh
Atmos. Chem. Phys., 20, 15811–15833, https://doi.org/10.5194/acp-20-15811-2020, https://doi.org/10.5194/acp-20-15811-2020, 2020
Short summary
Short summary
The chemical composition of aerosol particles is very important as it determines to which extent they can affect the Earth's climate by acting with solar light and modifying the properties of clouds. The South Atlantic region is a remote and under-explored region to date where these effects could be important. The measurements presented in this paper consist in the analysis of samples collected at a coastal site in Namibia. The first long-term source apportionment is presented and discussed.
Cécile Guieu, Fabrizio D'Ortenzio, François Dulac, Vincent Taillandier, Andrea Doglioli, Anne Petrenko, Stéphanie Barrillon, Marc Mallet, Pierre Nabat, and Karine Desboeufs
Biogeosciences, 17, 5563–5585, https://doi.org/10.5194/bg-17-5563-2020, https://doi.org/10.5194/bg-17-5563-2020, 2020
Short summary
Short summary
We describe here the objectives and strategy of the PEACETIME project and cruise, dedicated to dust deposition and its impacts in the Mediterranean Sea. Our strategy to go a step further forward than in previous approaches in understanding these impacts by catching a real deposition event at sea is detailed. We summarize the work performed at sea, the type of data acquired and their valorization in the papers published in the special issue.
Clarissa Baldo, Paola Formenti, Sophie Nowak, Servanne Chevaillier, Mathieu Cazaunau, Edouard Pangui, Claudia Di Biagio, Jean-Francois Doussin, Konstantin Ignatyev, Pavla Dagsson-Waldhauserova, Olafur Arnalds, A. Robert MacKenzie, and Zongbo Shi
Atmos. Chem. Phys., 20, 13521–13539, https://doi.org/10.5194/acp-20-13521-2020, https://doi.org/10.5194/acp-20-13521-2020, 2020
Short summary
Short summary
We showed that Icelandic dust has a fundamentally different chemical and mineralogical composition from low-latitude dust. In particular, magnetite is as high as 1 %–2 % of the total dust mass. Our results suggest that Icelandic dust may have an important impact on the radiation balance in the subpolar and polar regions.
Yuri Galletti, Silvia Becagli, Alcide di Sarra, Margherita Gonnelli, Elvira Pulido-Villena, Damiano M. Sferlazzo, Rita Traversi, Stefano Vestri, and Chiara Santinelli
Biogeosciences, 17, 3669–3684, https://doi.org/10.5194/bg-17-3669-2020, https://doi.org/10.5194/bg-17-3669-2020, 2020
Short summary
Short summary
This paper reports the first data about atmospheric deposition of dissolved organic matter (DOM) on the island of Lampedusa. It also shows the implications for the surface marine layer by studying the impact of atmospheric organic carbon deposition in the marine ecosystem. It is a preliminary study, but it is pioneering and important for having new data that can be crucial in order to understand the impact of atmospheric deposition on the marine carbon cycle in a global climate change scenario.
Vincent Taillandier, Louis Prieur, Fabrizio D'Ortenzio, Maurizio Ribera d'Alcalà, and Elvira Pulido-Villena
Biogeosciences, 17, 3343–3366, https://doi.org/10.5194/bg-17-3343-2020, https://doi.org/10.5194/bg-17-3343-2020, 2020
Short summary
Short summary
This study addresses the role played by vertical diffusion in the nutrient enrichment of the Levantine intermediate waters, a process particularly relevant inside thermohaline staircases. Thanks to a high profiling frequency over a 4-year period, BGC-Argo float observations reveal the temporal continuity of the layering patterns encountered during the cruise PEACETIME and their impact on vertical and lateral transfers of nitrate between the deep reservoir and the surface productive zone.
Antonio Tovar-Sánchez, Araceli Rodríguez-Romero, Anja Engel, Birthe Zäncker, Franck Fu, Emilio Marañón, María Pérez-Lorenzo, Matthieu Bressac, Thibaut Wagener, Sylvain Triquet, Guillaume Siour, Karine Desboeufs, and Cécile Guieu
Biogeosciences, 17, 2349–2364, https://doi.org/10.5194/bg-17-2349-2020, https://doi.org/10.5194/bg-17-2349-2020, 2020
Short summary
Short summary
Residence times of particulate metals derived from aerosol deposition in the Sea Surface Microlayer of the Mediterranean Sea ranged from a couple of minutes (e.g., for Fe) to a few hours (e.g., for Cu). Microbial activity seems to play an important role in in this process and in the concentration and distribution of metals between diferent water layers.
Laurent Menut, Guillaume Siour, Bertrand Bessagnet, Florian Couvidat, Emilie Journet, Yves Balkanski, and Karine Desboeufs
Geosci. Model Dev., 13, 2051–2071, https://doi.org/10.5194/gmd-13-2051-2020, https://doi.org/10.5194/gmd-13-2051-2020, 2020
Short summary
Short summary
Modelling of mineral dust is often done using one single mean species. In this study, differentiated mineral species with their chemical composition are implemented in the CHIMERE regional chemistry-transport model by using global databases. Simulations are carried out to quantify the realism and gain of such mineralogy.
Philippe Massicotte, Rémi Amiraux, Marie-Pier Amyot, Philippe Archambault, Mathieu Ardyna, Laurent Arnaud, Lise Artigue, Cyril Aubry, Pierre Ayotte, Guislain Bécu, Simon Bélanger, Ronald Benner, Henry C. Bittig, Annick Bricaud, Éric Brossier, Flavienne Bruyant, Laurent Chauvaud, Debra Christiansen-Stowe, Hervé Claustre, Véronique Cornet-Barthaux, Pierre Coupel, Christine Cox, Aurelie Delaforge, Thibaud Dezutter, Céline Dimier, Florent Domine, Francis Dufour, Christiane Dufresne, Dany Dumont, Jens Ehn, Brent Else, Joannie Ferland, Marie-Hélène Forget, Louis Fortier, Martí Galí, Virginie Galindo, Morgane Gallinari, Nicole Garcia, Catherine Gérikas Ribeiro, Margaux Gourdal, Priscilla Gourvil, Clemence Goyens, Pierre-Luc Grondin, Pascal Guillot, Caroline Guilmette, Marie-Noëlle Houssais, Fabien Joux, Léo Lacour, Thomas Lacour, Augustin Lafond, José Lagunas, Catherine Lalande, Julien Laliberté, Simon Lambert-Girard, Jade Larivière, Johann Lavaud, Anita LeBaron, Karine Leblanc, Florence Le Gall, Justine Legras, Mélanie Lemire, Maurice Levasseur, Edouard Leymarie, Aude Leynaert, Adriana Lopes dos Santos, Antonio Lourenço, David Mah, Claudie Marec, Dominique Marie, Nicolas Martin, Constance Marty, Sabine Marty, Guillaume Massé, Atsushi Matsuoka, Lisa Matthes, Brivaela Moriceau, Pierre-Emmanuel Muller, Christopher-John Mundy, Griet Neukermans, Laurent Oziel, Christos Panagiotopoulos, Jean-Jacques Pangrazi, Ghislain Picard, Marc Picheral, France Pinczon du Sel, Nicole Pogorzelec, Ian Probert, Bernard Quéguiner, Patrick Raimbault, Joséphine Ras, Eric Rehm, Erin Reimer, Jean-François Rontani, Søren Rysgaard, Blanche Saint-Béat, Makoto Sampei, Julie Sansoulet, Catherine Schmechtig, Sabine Schmidt, Richard Sempéré, Caroline Sévigny, Yuan Shen, Margot Tragin, Jean-Éric Tremblay, Daniel Vaulot, Gauthier Verin, Frédéric Vivier, Anda Vladoiu, Jeremy Whitehead, and Marcel Babin
Earth Syst. Sci. Data, 12, 151–176, https://doi.org/10.5194/essd-12-151-2020, https://doi.org/10.5194/essd-12-151-2020, 2020
Short summary
Short summary
The Green Edge initiative was developed to understand the processes controlling the primary productivity and the fate of organic matter produced during the Arctic spring bloom (PSB). In this article, we present an overview of an extensive and comprehensive dataset acquired during two expeditions conducted in 2015 and 2016 on landfast ice southeast of Qikiqtarjuaq Island in Baffin Bay.
Patrick Chazette, Cyrille Flamant, Julien Totems, Marco Gaetani, Gwendoline Smith, Alexandre Baron, Xavier Landsheere, Karine Desboeufs, Jean-François Doussin, and Paola Formenti
Atmos. Chem. Phys., 19, 14979–15005, https://doi.org/10.5194/acp-19-14979-2019, https://doi.org/10.5194/acp-19-14979-2019, 2019
Short summary
Short summary
Evolution of the vertical distribution and optical properties of aerosols in the free troposphere is analysed for the first time over the Namibian coast, a region where uncertainties on aerosol–cloud coupling in climate simulations are significant. The high variability of atmospheric aerosol composition is highlighted using a combination of ground-based, airborne and space-borne lidar. Aerosols are mainly transported from Angola, but part of the highest aerosol layer may come from South America.
Marc D. Mallet, Barbara D'Anna, Aurélie Même, Maria Chiara Bove, Federico Cassola, Giandomenico Pace, Karine Desboeufs, Claudia Di Biagio, Jean-Francois Doussin, Michel Maille, Dario Massabò, Jean Sciare, Pascal Zapf, Alcide Giorgio di Sarra, and Paola Formenti
Atmos. Chem. Phys., 19, 11123–11142, https://doi.org/10.5194/acp-19-11123-2019, https://doi.org/10.5194/acp-19-11123-2019, 2019
Short summary
Short summary
We present findings from a summertime field campaign at the remote island of Lampedusa in the central Mediterranean Sea. We show that the aerosol loading is similar to coastal sites around the Mediterranean. We observe higher loadings of sulfate and aged organic aerosol from air masses transported over the central and eastern Mediterranean in comparison to those from the western Mediterranean. These results highlight the rarity of pristine air masses, even in remote marine environments.
David Au Yang, Pierre Cartigny, Karine Desboeufs, and David Widory
Atmos. Chem. Phys., 19, 3779–3796, https://doi.org/10.5194/acp-19-3779-2019, https://doi.org/10.5194/acp-19-3779-2019, 2019
Short summary
Short summary
Sulfates present in urban aerosols collected worldwide usually exhibit 33S-anomalies whose origin remains unclear. Besides, the sulfate concentration is not very well modelled nowadays, which, coupled with the isotopic composition anomaly on the 33S, would highlight the presence of at least an additional oxidation pathway, different from O2+TMI, O3, OH, H2O2 and NO2. We suggest here the implication of two other possible oxidation pathways.
Christos Panagiotopoulos, Mireille Pujo-Pay, Mar Benavides, France Van Wambeke, and Richard Sempéré
Biogeosciences, 16, 105–116, https://doi.org/10.5194/bg-16-105-2019, https://doi.org/10.5194/bg-16-105-2019, 2019
Pascale Bouruet-Aubertot, Yannis Cuypers, Andrea Doglioli, Mathieu Caffin, Christophe Yohia, Alain de Verneil, Anne Petrenko, Dominique Lefèvre, Hervé Le Goff, Gilles Rougier, Marc Picheral, and Thierry Moutin
Biogeosciences, 15, 7485–7504, https://doi.org/10.5194/bg-15-7485-2018, https://doi.org/10.5194/bg-15-7485-2018, 2018
Short summary
Short summary
The OUTPACE cruise took place between New Caledonia and French Polynesia. The main purpose was to understand how micro-organisms can survive in a very poor environment. One main source of nutrients is at depth, below the euphotic layer where micro-organisms live. The purpose of the turbulence measurements was to determine to which extent turbulence may
upliftnutrients into the euphotic layer. The origin of the turbulence that was found contrasted along the transect was also determined.
Paola Formenti, Stuart John Piketh, Andreas Namwoonde, Danitza Klopper, Roelof Burger, Mathieu Cazaunau, Anaïs Feron, Cécile Gaimoz, Stephen Broccardo, Nicola Walton, Karine Desboeufs, Guillaume Siour, Mattheus Hanghome, Samuel Mafwila, Edosa Omoregie, Wolfgang Junkermann, and Willy Maenhaut
Atmos. Chem. Phys., 18, 17003–17016, https://doi.org/10.5194/acp-18-17003-2018, https://doi.org/10.5194/acp-18-17003-2018, 2018
Short summary
Short summary
Three-years of continuous measurements at the Henties Bay Aerosol Observatory (HBAO; 22°S, 14°05’E), Namibia, show that during the austral wintertime, long- and medium-range transport of pollution from biomass and fossil fuel burning give rise to peaks of light-absorbing black carbon aerosols into the marine boundary layer ahead of the main biomass burning season. This could affect the cloud properties.
Karine Desboeufs, Elisabeth Bon Nguyen, Servanne Chevaillier, Sylvain Triquet, and François Dulac
Atmos. Chem. Phys., 18, 14477–14492, https://doi.org/10.5194/acp-18-14477-2018, https://doi.org/10.5194/acp-18-14477-2018, 2018
Short summary
Short summary
Atmospheric deposition is known to be a major source of nutrients for the marine biosphere in the Mediterranean Sea. The study of the origin of nutrients and trace metals in Corsica presented here shows that the dust events were the major sources of Si and Fe. Conversely, combustion sources predominated the inputs of N, P, and trace metals. This work showed the importance of considering background anthropogenic deposition for estimating the impact of atmospheric forcing on marine biota.
Karine Leblanc, Véronique Cornet, Peggy Rimmelin-Maury, Olivier Grosso, Sandra Hélias-Nunige, Camille Brunet, Hervé Claustre, Joséphine Ras, Nathalie Leblond, and Bernard Quéguiner
Biogeosciences, 15, 5595–5620, https://doi.org/10.5194/bg-15-5595-2018, https://doi.org/10.5194/bg-15-5595-2018, 2018
Short summary
Short summary
The Si biogeochemical cycle was studied during two oceanographic cruises in the tropical South Pacific in 2005 and 2015, between New Caledonia and the Chilean upwelling (8–34° S). Some of the lowest levels of biogenic silica stocks were found in the southern Pacific gyre, where Chlorophyll a concentrations are most depleted worldwide. Size-fractionated biogenic silica concentrations as well as Si kinetic uptake experiments revealed biological Si uptake by the picoplanktonic size fraction.
Cécile Dupouy, Robert Frouin, Marc Tedetti, Morgane Maillard, Martine Rodier, Fabien Lombard, Lionel Guidi, Marc Picheral, Jacques Neveux, Solange Duhamel, Bruno Charrière, and Richard Sempéré
Biogeosciences, 15, 5249–5269, https://doi.org/10.5194/bg-15-5249-2018, https://doi.org/10.5194/bg-15-5249-2018, 2018
Short summary
Short summary
The marine diazotrophic Cyanobacterium Trichodesmium from the Underwater Vision Profiler 5 is concentrated in the first 50 m in the western tropical Pacific Ocean (18–22° S, 160° E–160° W). Its contribution to Tchl a and zeaxanthin is 60 % in the Melanesian archipelago and 30 % in the Fijian archipelago. Its impact on UV–VIS radiance is a peculiar signal in the green and yellow and possibly associated with backscattering or phycoerythrin fluorescence from Trichodesmium.
Thibaut Wagener, Nicolas Metzl, Mathieu Caffin, Jonathan Fin, Sandra Helias Nunige, Dominique Lefevre, Claire Lo Monaco, Gilles Rougier, and Thierry Moutin
Biogeosciences, 15, 5221–5236, https://doi.org/10.5194/bg-15-5221-2018, https://doi.org/10.5194/bg-15-5221-2018, 2018
Short summary
Short summary
The western tropical South Pacific was sampled along a longitudinal 4000 km transect (OUTPACE cruise) for the measurement of carbonate parameters (total alkalinity and total inorganic carbon) between the Melanesian Archipelago and the western part of the South Pacific gyre. This paper reports this new dataset and derived properties. We also estimate anthropogenic carbon distribution in the water column using the TrOCA method.
Marine Bretagnon, Aurélien Paulmier, Véronique Garçon, Boris Dewitte, Séréna Illig, Nathalie Leblond, Laurent Coppola, Fernando Campos, Federico Velazco, Christos Panagiotopoulos, Andreas Oschlies, J. Martin Hernandez-Ayon, Helmut Maske, Oscar Vergara, Ivonne Montes, Philippe Martinez, Edgardo Carrasco, Jacques Grelet, Olivier Desprez-De-Gesincourt, Christophe Maes, and Lionel Scouarnec
Biogeosciences, 15, 5093–5111, https://doi.org/10.5194/bg-15-5093-2018, https://doi.org/10.5194/bg-15-5093-2018, 2018
Short summary
Short summary
In oxygen minimum zone, the fate of the organic matter is a key question as the low oxygen condition would preserve the OM and thus enhance the biological carbon pump while the high microbial activity would foster the remineralisation and the greenhouse gases emission. To investigate this paradigm, sediment traps were deployed off Peru. We pointed out the influence of the oxygenation as well as the organic matter quantity and quality on the carbon transfer efficiency in the oxygen minimum zone.
Sophie Bonnet, Mathieu Caffin, Hugo Berthelot, Olivier Grosso, Mar Benavides, Sandra Helias-Nunige, Cécile Guieu, Marcus Stenegren, and Rachel Ann Foster
Biogeosciences, 15, 4215–4232, https://doi.org/10.5194/bg-15-4215-2018, https://doi.org/10.5194/bg-15-4215-2018, 2018
Nicholas Bock, France Van Wambeke, Moïra Dion, and Solange Duhamel
Biogeosciences, 15, 3909–3925, https://doi.org/10.5194/bg-15-3909-2018, https://doi.org/10.5194/bg-15-3909-2018, 2018
Short summary
Short summary
We report the distribution of major nano- and pico-plankton groups in the western tropical South Pacific. We found microbial community structure to be typical of highly stratified regions of the open ocean, with significant contributions to total biomass by picophytoeukaryotes, and N2 fixation playing a central role in regulating ecosystem processes. Our results also suggest a reduction in the importance of predation in regulating bacteria populations under nutrient-limited conditions.
Mar Benavides, Katyanne M. Shoemaker, Pia H. Moisander, Jutta Niggemann, Thorsten Dittmar, Solange Duhamel, Olivier Grosso, Mireille Pujo-Pay, Sandra Hélias-Nunige, Alain Fumenia, and Sophie Bonnet
Biogeosciences, 15, 3107–3119, https://doi.org/10.5194/bg-15-3107-2018, https://doi.org/10.5194/bg-15-3107-2018, 2018
Short summary
Short summary
We measured N2 fixation rates and identified diazotrophic phylotypes in the mesopelagic layer along a transect spanning from New Caledonia to French Polynesia. N2 fixation rates were low but consistently detected across all depths and stations. A distinct diazotrophic phylotype dominated at 650 dbar, coinciding with the oxygenated Subantarctic Mode Water (SAMW) and suggesting that the distribution of aphotic diazotroph communities is to some extent controlled by water mass structure.
Thierry Moutin, Thibaut Wagener, Mathieu Caffin, Alain Fumenia, Audrey Gimenez, Melika Baklouti, Pascale Bouruet-Aubertot, Mireille Pujo-Pay, Karine Leblanc, Dominique Lefevre, Sandra Helias Nunige, Nathalie Leblond, Olivier Grosso, and Alain de Verneil
Biogeosciences, 15, 2961–2989, https://doi.org/10.5194/bg-15-2961-2018, https://doi.org/10.5194/bg-15-2961-2018, 2018
Short summary
Short summary
Surface waters of the western tropical South Pacific were sampled along a longitudinal 4000 km transect during the stratified period between the Melanesian Archipelago and the western part of the South Pacific gyre. We found a significant biological carbon pump sustained almost exclusively by N2 fixation and essentially controlled by phosphate availability in the iron-rich Melanesian Archipelago waters which appears to be a net sink for atmospheric CO2 while the gyre is in a quasi-steady state.
France Van Wambeke, Audrey Gimenez, Solange Duhamel, Cécile Dupouy, Dominique Lefevre, Mireille Pujo-Pay, and Thierry Moutin
Biogeosciences, 15, 2669–2689, https://doi.org/10.5194/bg-15-2669-2018, https://doi.org/10.5194/bg-15-2669-2018, 2018
Short summary
Short summary
The western tropical South Pacific Ocean has recently been shown to be a hotspot for biological nitrogen fixation. In this study, we examined the horizontal and vertical distribution of heterotrophic prokaryotic production alongside photosynthetic rates, nitrogen fixation rates and phosphate turnover times across the western tropical South Pacific Ocean, in order to relate these fluxes to bottom–up controls (related to nitrogen, phosphate and labile C availability).
Mathieu Caffin, Thierry Moutin, Rachel Ann Foster, Pascale Bouruet-Aubertot, Andrea Michelangelo Doglioli, Hugo Berthelot, Cécile Guieu, Olivier Grosso, Sandra Helias-Nunige, Nathalie Leblond, Audrey Gimenez, Anne Alexandra Petrenko, Alain de Verneil, and Sophie Bonnet
Biogeosciences, 15, 2565–2585, https://doi.org/10.5194/bg-15-2565-2018, https://doi.org/10.5194/bg-15-2565-2018, 2018
Short summary
Short summary
We performed N budgets to assess the role of N2 fixation on production and export in the western tropical South Pacific Ocean. We deployed a combination of techniques including high-sensitivity measurements of N input and sediment traps deployment. We demonstrated that N2 fixation was the major source of new N before atmospheric deposition and upward nitrate fluxes. It contributed significantly to organic matter export, indicating a high efficiency of this region to export carbon.
Vincent Taillandier, Thibaut Wagener, Fabrizio D'Ortenzio, Nicolas Mayot, Hervé Legoff, Joséphine Ras, Laurent Coppola, Orens Pasqueron de Fommervault, Catherine Schmechtig, Emilie Diamond, Henry Bittig, Dominique Lefevre, Edouard Leymarie, Antoine Poteau, and Louis Prieur
Earth Syst. Sci. Data, 10, 627–641, https://doi.org/10.5194/essd-10-627-2018, https://doi.org/10.5194/essd-10-627-2018, 2018
Short summary
Short summary
We report on data from an oceanographic cruise, covering western, central and eastern parts of the Mediterranean Sea. This cruise was fully dedicated to the maintenance and the metrological verification of a biogeochemical observing system based on a fleet of BGC-Argo floats.
Pierre Marrec, Gérald Grégori, Andrea M. Doglioli, Mathilde Dugenne, Alice Della Penna, Nagib Bhairy, Thierry Cariou, Sandra Hélias Nunige, Soumaya Lahbib, Gilles Rougier, Thibaut Wagener, and Melilotus Thyssen
Biogeosciences, 15, 1579–1606, https://doi.org/10.5194/bg-15-1579-2018, https://doi.org/10.5194/bg-15-1579-2018, 2018
Short summary
Short summary
The objective of this study was to better understand the variability of the phytoplankton community structure in small physical structures at the surface of the ocean. After identifying such a structure in the Mediterranean Sea, we deployed cutting-edge physical and biological sensors in order to observe at a high frequency the dynamics of this structure. From these observations we described the variations of the phytoplankton community structure and how the physics controls this variability.
Alain Fumenia, Thierry Moutin, Sophie Bonnet, Mar Benavides, Anne Petrenko, Sandra Helias Nunige, and Christophe Maes
Biogeosciences Discuss., https://doi.org/10.5194/bg-2017-557, https://doi.org/10.5194/bg-2017-557, 2018
Revised manuscript not accepted
Short summary
Short summary
The Melanesian archipelago waters between 160° E and 170° W are characterized by a significant N2 fixation rates and an excess of particulate organic nitrogen compared to the canonical ratio of Redfield and a positive N*. We hypothesize that the southern branch of the subtropical gyre is probably the main vector of excess nitrogen transport in the thermocline waters showing an influence of nitrogen fixation occurring in the western tropical in a large part of the South Pacific.
Yinghe Fu, Karine Desboeufs, Julie Vincent, Elisabeth Bon Nguyen, Benoit Laurent, Remi Losno, and François Dulac
Atmos. Meas. Tech., 10, 4389–4401, https://doi.org/10.5194/amt-10-4389-2017, https://doi.org/10.5194/amt-10-4389-2017, 2017
Lorenzo Caponi, Paola Formenti, Dario Massabó, Claudia Di Biagio, Mathieu Cazaunau, Edouard Pangui, Servanne Chevaillier, Gautier Landrot, Meinrat O. Andreae, Konrad Kandler, Stuart Piketh, Thuraya Saeed, Dave Seibert, Earle Williams, Yves Balkanski, Paolo Prati, and Jean-François Doussin
Atmos. Chem. Phys., 17, 7175–7191, https://doi.org/10.5194/acp-17-7175-2017, https://doi.org/10.5194/acp-17-7175-2017, 2017
Short summary
Short summary
This paper presents new laboratory measurements of the shortwave mass absorption efficiency (MAE) used by climate models for mineral dust of different origin and at different sizes. We found that small particles are more efficient, by given mass, in absorbing radiation, particularly at shorter wavelength. Because dust has high concentrations in the atmosphere, light absorption by mineral dust can be competitive to other absorbing atmospheric aerosols such as black and brown carbon.
Pascal Conan, Mireille Pujo-Pay, Marina Agab, Laura Calva-Benítez, Sandrine Chifflet, Pascal Douillet, Claire Dussud, Renaud Fichez, Christian Grenz, Francisco Gutierrez Mendieta, Montserrat Origel-Moreno, Arturo Rodríguez-Blanco, Caroline Sauret, Tatiana Severin, Marc Tedetti, Rocío Torres Alvarado, and Jean-François Ghiglione
Biogeosciences, 14, 959–975, https://doi.org/10.5194/bg-14-959-2017, https://doi.org/10.5194/bg-14-959-2017, 2017
Short summary
Short summary
Coastal lagoons are extremely rich, diverse, and dynamic but very fragile ecosystems subject to anthropogenic pressures. A joint France–Mexico biogeochemical study was conducted in the Términos Lagoon under severe drought related to an El Niño Modoki episode. In short, the water column of the Términos Lagoon functioned as a nitrogen sink, but variation in mineral stoichiometry across the lagoon mainly accounted for the heterogeneity in microbial distribution and activity.
Julie Vincent, Benoit Laurent, Rémi Losno, Elisabeth Bon Nguyen, Pierre Roullet, Stéphane Sauvage, Servanne Chevaillier, Patrice Coddeville, Noura Ouboulmane, Alcide Giorgio di Sarra, Antonio Tovar-Sánchez, Damiano Sferlazzo, Ana Massanet, Sylvain Triquet, Rafael Morales Baquero, Michel Fornier, Cyril Coursier, Karine Desboeufs, François Dulac, and Gilles Bergametti
Atmos. Chem. Phys., 16, 8749–8766, https://doi.org/10.5194/acp-16-8749-2016, https://doi.org/10.5194/acp-16-8749-2016, 2016
Short summary
Short summary
To investigate dust deposition dynamics at the regional scale, five automatic deposition collectors named CARAGA have been deployed in the western Mediterranean basin (Lampedusa, Majorca, Corsica, Frioul and Le Casset) during 1 to 3 years depending on the station. Complementary observations provided by both satellite and air mass trajectories are used to identify the dust provenance areas and the transport pathways from the Sahara to the stations for the studied period.
Ilana Berman-Frank, Dina Spungin, Eyal Rahav, France Van Wambeke, Kendra Turk-Kubo, and Thierry Moutin
Biogeosciences, 13, 3793–3805, https://doi.org/10.5194/bg-13-3793-2016, https://doi.org/10.5194/bg-13-3793-2016, 2016
Short summary
Short summary
In the marine environment, sticky sugar-containing gels, termed transparent exopolymeric particles (TEP), are produced from biological sources and physical and chemical processes. These compounds are essential vectors enhancing downward flow of organic matter and its storage at depth. Spatial and temporal dynamics of TEPs were followed for 23 days during the VAHINE mesocosm experiment that investigated the fate of nitrogen and carbon derived from organisms fixing atmospheric N2 (diazotrophs).
Marc Tedetti, Lauriane Marie, Rüdiger Röttgers, Martine Rodier, France Van Wambeke, Sandra Helias, Mathieu Caffin, Véronique Cornet-Barthaux, and Cécile Dupouy
Biogeosciences, 13, 3283–3303, https://doi.org/10.5194/bg-13-3283-2016, https://doi.org/10.5194/bg-13-3283-2016, 2016
Short summary
Short summary
In the framework of the VAHINE project, we investigated the spectral characteristics and the variability of dissolved and particulate chromophoric materials throughout a 23-day mesocosm experiment conducted in the south-west Pacific at the mouth of the New Caledonian coral lagoon. We found that the dynamics of CDOM and particulate matter absorption were strongly coupled with those of cyanobacteria Synechococcus spp. and bacterial production.
France Van Wambeke, Ulrike Pfreundt, Aude Barani, Hugo Berthelot, Thierry Moutin, Martine Rodier, Wolfgang R. Hess, and Sophie Bonnet
Biogeosciences, 13, 3187–3202, https://doi.org/10.5194/bg-13-3187-2016, https://doi.org/10.5194/bg-13-3187-2016, 2016
Short summary
Short summary
The phytoplankton is at the base of the plankton food web in large parts of oceanic "deserts" such as the South Pacific Ocean, where nitrogen sources limit activity. Mesocosms were fertilized with phosphorus to stimulate diazotrophy (atmospheric N2 fixation). Mostly diazotroph-derived nitrogen fuelled the heterotrophic bacterial community through indirect processes generating dissolved organic matter and detritus, such as mortality, lysis and grazing of both diazotrophs and non-diazotrophs.
Ulrike Pfreundt, France Van Wambeke, Mathieu Caffin, Sophie Bonnet, and Wolfgang R. Hess
Biogeosciences, 13, 2319–2337, https://doi.org/10.5194/bg-13-2319-2016, https://doi.org/10.5194/bg-13-2319-2016, 2016
Short summary
Short summary
The Southwest Pacific has one of the highest N2 fixation rates in the global ocean, yet information is scarce on the bacterioplankton interrelationships. We detected high microbial diversity in the New Caledonia lagoon and inside a 50 000 L experimental enclosure of the same water mass over 3 weeks and give evidence for previously unknown niche partitioning. Phosphate fertilization promoted the growth of efficient N2 fixing cyanobacteria triggering the growth of most heterotrophic bacteria.
M. Mallet, F. Dulac, P. Formenti, P. Nabat, J. Sciare, G. Roberts, J. Pelon, G. Ancellet, D. Tanré, F. Parol, C. Denjean, G. Brogniez, A. di Sarra, L. Alados-Arboledas, J. Arndt, F. Auriol, L. Blarel, T. Bourrianne, P. Chazette, S. Chevaillier, M. Claeys, B. D'Anna, Y. Derimian, K. Desboeufs, T. Di Iorio, J.-F. Doussin, P. Durand, A. Féron, E. Freney, C. Gaimoz, P. Goloub, J. L. Gómez-Amo, M. J. Granados-Muñoz, N. Grand, E. Hamonou, I. Jankowiak, M. Jeannot, J.-F. Léon, M. Maillé, S. Mailler, D. Meloni, L. Menut, G. Momboisse, J. Nicolas, T. Podvin, V. Pont, G. Rea, J.-B. Renard, L. Roblou, K. Schepanski, A. Schwarzenboeck, K. Sellegri, M. Sicard, F. Solmon, S. Somot, B Torres, J. Totems, S. Triquet, N. Verdier, C. Verwaerde, F. Waquet, J. Wenger, and P. Zapf
Atmos. Chem. Phys., 16, 455–504, https://doi.org/10.5194/acp-16-455-2016, https://doi.org/10.5194/acp-16-455-2016, 2016
Short summary
Short summary
The aim of this article is to present an experimental campaign over the Mediterranean focused on aerosol-radiation measurements and modeling. Results indicate an important atmospheric loading associated with a moderate absorbing ability of mineral dust. Observations suggest a complex vertical structure and size distributions characterized by large aerosols within dust plumes. The radiative effect is highly variable, with negative forcing over the Mediterranean and positive over northern Africa.
Y. Zhang, N. Mahowald, R. A. Scanza, E. Journet, K. Desboeufs, S. Albani, J. F. Kok, G. Zhuang, Y. Chen, D. D. Cohen, A. Paytan, M. D. Patey, E. P. Achterberg, J. P. Engelbrecht, and K. W. Fomba
Biogeosciences, 12, 5771–5792, https://doi.org/10.5194/bg-12-5771-2015, https://doi.org/10.5194/bg-12-5771-2015, 2015
Short summary
Short summary
A new technique to determine a size-fractionated global soil elemental emission inventory based on a global soil and mineralogical data set is introduced. Spatial variability of mineral dust elemental fractions (8 elements, e.g., Ca, Fe, Al) is identified on a global scale, particularly for Ca. The Ca/Al ratio ranged between 0.1 and 5.0 and is confirmed as an indicator of dust source regions by a global dust model. Total and soluble dust element fluxes into different ocean basins are estimated.
U. Christaki, D. Lefèvre, C. Georges, J. Colombet, P. Catala, C. Courties, T. Sime-Ngando, S. Blain, and I. Obernosterer
Biogeosciences, 11, 6739–6753, https://doi.org/10.5194/bg-11-6739-2014, https://doi.org/10.5194/bg-11-6739-2014, 2014
Short summary
Short summary
The concurrent investigation of several parameters has provided insight into two key roles of heterotrophic bacteria, and the microbial food web functioning, at the onset and late phase of the spring phytoplankton bloom induced by natural iron fertilization in the Southern Ocean.
E. Pulido-Villena, A.-C. Baudoux, I. Obernosterer, M. Landa, J. Caparros, P. Catala, C. Georges, J. Harmand, and C. Guieu
Biogeosciences, 11, 5607–5619, https://doi.org/10.5194/bg-11-5607-2014, https://doi.org/10.5194/bg-11-5607-2014, 2014
C. Guieu, C. Ridame, E. Pulido-Villena, M. Bressac, K. Desboeufs, and F. Dulac
Biogeosciences, 11, 5621–5635, https://doi.org/10.5194/bg-11-5621-2014, https://doi.org/10.5194/bg-11-5621-2014, 2014
K. Desboeufs, N. Leblond, T. Wagener, E. Bon Nguyen, and C. Guieu
Biogeosciences, 11, 5581–5594, https://doi.org/10.5194/bg-11-5581-2014, https://doi.org/10.5194/bg-11-5581-2014, 2014
P. Formenti, S. Caquineau, K. Desboeufs, A. Klaver, S. Chevaillier, E. Journet, and J. L. Rajot
Atmos. Chem. Phys., 14, 10663–10686, https://doi.org/10.5194/acp-14-10663-2014, https://doi.org/10.5194/acp-14-10663-2014, 2014
M. Bressac, C. Guieu, D. Doxaran, F. Bourrin, K. Desboeufs, N. Leblond, and C. Ridame
Biogeosciences, 11, 1007–1020, https://doi.org/10.5194/bg-11-1007-2014, https://doi.org/10.5194/bg-11-1007-2014, 2014
M. Girault, H. Arakawa, A. Barani, H. J. Ceccaldi, F. Hashihama, S. Kinouchi, and G. Gregori
Biogeosciences, 10, 5947–5965, https://doi.org/10.5194/bg-10-5947-2013, https://doi.org/10.5194/bg-10-5947-2013, 2013
R. Paris and K. V. Desboeufs
Atmos. Chem. Phys., 13, 4895–4905, https://doi.org/10.5194/acp-13-4895-2013, https://doi.org/10.5194/acp-13-4895-2013, 2013
Related subject area
Biogeochemistry: Environmental Microbiology
Effects of surface water interactions with karst groundwater on microbial biomass, metabolism, and production
Overview: Global change effects on terrestrial biogeochemistry at the plant–soil interface
Ideas and perspectives: Microorganisms in the air through the lenses of atmospheric chemistry and microphysics
Grazing mortality as a controlling factor in the uncultured non-cyanobacterial diazotroph (Gamma A) around the Kuroshio region
Changes in diazotrophic community structure associated with Kuroshio succession in the northern South China Sea
Technical note: A comparison of methods for estimating coccolith mass
Fractionation of stable carbon isotopes during formate consumption in anoxic rice paddy soils and lake sediments
Characteristics of bacterial and fungal communities and their associations with sugar compounds in atmospheric aerosols at a rural site in northern China
Responses of globally important phytoplankton species to olivine dissolution products and implications for carbon dioxide removal via ocean alkalinity enhancement
Differentiation of cognate bacterial communities in thermokarst landscapes: implications for ecological consequences of permafrost degradation
A multi-phase biogeochemical model for mitigating earthquake-induced liquefaction via microbially induced desaturation and calcium carbonate precipitation
Phosphorus regulates ectomycorrhizal fungi biomass production in a Norway spruce forest
Reallocation of elemental content and macromolecules in the coccolithophore Emiliania huxleyi to acclimate to climate change
Abrasion of sedimentary rocks as a source of hydrogen peroxide and nutrients to subglacial ecosystems
Nitrous oxide (N2O) synthesis by the freshwater cyanobacterium Microcystis aeruginosa
Interdisciplinary strategy to assess the impact of meteorological variables on the biochemical composition of the rain and the dynamics of a small eutrophic lake under rain forcing
Depth-related patterns in microbial community responses to complex organic matter in the western North Atlantic Ocean
Assessing the influence of ocean alkalinity enhancement on a coastal phytoplankton community
Eddy-enhanced primary production sustains heterotrophic microbial activities in the Eastern Tropical North Atlantic
Composition and niche-specific characteristics of microbial consortia colonizing Marsberg copper mine in the Rhenish Massif
Diversity and assembly processes of microbial eukaryotic communities in Fildes Peninsula Lakes (West Antarctica)
Nitrophobic ectomycorrhizal fungi are associated with enhanced hydrophobicity of soil organic matter in a Norway spruce forest
Physiological control on carbon isotope fractionation in marine phytoplankton
Implementation of mycorrhizal mechanisms into soil carbon model improves the prediction of long-term processes of plant litter decomposition
Impact of dust addition on the microbial food web under present and future conditions of pH and temperature
Fractionation of stable carbon isotopes during acetate consumption by methanogenic and sulfidogenic microbial communities in rice paddy soils and lake sediments
Hydrothermal trace metal release and microbial metabolism in the northeastern Lau Basin of the South Pacific Ocean
Sedimentation rate and organic matter dynamics shape microbiomes across a continental margin
Disturbance triggers non-linear microbe–environment feedbacks
Hydrographic fronts shape productivity, nitrogen fixation, and microbial community composition in the southern Indian Ocean and the Southern Ocean
Microbial and geo-archaeological records reveal the growth rate, origin and composition of desert rock surface communities
Metagenomic insights into the metabolism of microbial communities that mediate iron and methane cycling in Lake Kinneret iron-rich methanic sediments
Spatiotemporal patterns of N2 fixation in coastal waters derived from rate measurements and remote sensing
Biotic and abiotic transformation of amino acids in cloud water: experimental studies and atmospheric implications
Microbial functional signature in the atmospheric boundary layer
New insight to niche partitioning and ecological function of ammonia oxidizing archaea in subtropical estuarine ecosystem
Impact of reactive surfaces on the abiotic reaction between nitrite and ferrous iron and associated nitrogen and oxygen isotope dynamics
Reviews and syntheses: Bacterial bioluminescence – ecology and impact in the biological carbon pump
Salinity-dependent algae uptake and subsequent carbon and nitrogen metabolisms of two intertidal foraminifera (Ammonia tepida and Haynesina germanica)
On giant shoulders: how a seamount affects the microbial community composition of seawater and sponges
Spatial variations in sedimentary N-transformation rates in the North Sea (German Bight)
Patterns of (trace) metals and microorganisms in the Rainbow hydrothermal vent plume at the Mid-Atlantic Ridge
Co-occurrence of Fe and P stress in natural populations of the marine diazotroph Trichodesmium
Senescence as the main driver of iodide release from a diverse range of marine phytoplankton
Reviews and syntheses: Biological weathering and its consequences at different spatial levels – from nanoscale to global scale
Deep-sea sponge grounds as nutrient sinks: denitrification is common in boreo-Arctic sponges
Inducing the attachment of cable bacteria on oxidizing electrodes
Bacterial degradation activity in the eastern tropical South Pacific oxygen minimum zone
Macromolecular fungal ice nuclei in Fusarium: effects of physical and chemical processing
Effects of sea animal colonization on the coupling between dynamics and activity of soil ammonia-oxidizing bacteria and archaea in maritime Antarctica
Adrian Barry-Sosa, Madison K. Flint, Justin C. Ellena, Jonathan B. Martin, and Brent C. Christner
Biogeosciences, 21, 3965–3984, https://doi.org/10.5194/bg-21-3965-2024, https://doi.org/10.5194/bg-21-3965-2024, 2024
Short summary
Short summary
This study examined springs in north central Florida focusing on how interactions between the surface and subsurface affected the properties of groundwater microbes. We found that microbes reproduced at rates that greatly exceed those documented for any other aquifer. Although the groundwater discharged to spring runs contains low concentrations of nutrients, our results indicate that microbes have access to sources of energy and produce new cells at rates similar to surface waterbodies.
Lucia Fuchslueger, Emily Francesca Solly, Alberto Canarini, and Albert Carles Brangarí
Biogeosciences, 21, 3959–3964, https://doi.org/10.5194/bg-21-3959-2024, https://doi.org/10.5194/bg-21-3959-2024, 2024
Short summary
Short summary
This overview of the special issue “Global change effects on terrestrial biogeochemistry at the plant–soil interface” features empirical, conceptual and modelling-based studies and outlines key findings on plant responses to elevated CO2; soil organism responses to warming; impacts on soil organic carbon, nitrogen and mineral nutrient cycling; and water level changes affecting greenhouse gas emissions, from the Arctic to the tropics, which are crucial for deciphering feedbacks to global change.
Barbara Ervens, Pierre Amato, Kifle Aregahegn, Muriel Joly, Amina Khaled, Tiphaine Labed-Veydert, Frédéric Mathonat, Leslie Nuñez López, Raphaëlle Péguilhan, and Minghui Zhang
EGUsphere, https://doi.org/10.5194/egusphere-2024-2377, https://doi.org/10.5194/egusphere-2024-2377, 2024
Short summary
Short summary
Atmospheric microorganisms are a small fraction of Earth's microbiome, with bacteria being a significant part. Aerosolized bacteria are airborne for a few days encountering unique chemical and physical conditions affecting stress levels and survival. We explore chemical and microphysical conditions bacteria encounter, highlighting potential nutrient and oxidant limitations and diverse effects by pollutants, which may ultimately impact the microbiome's role in global ecosystems and biodiversity.
Takuya Sato, Tamaha Yamaguchi, Kiyotaka Hidataka, Sayaka Sogawa, Takashi Setou, Taketoshi Kodama, Takuhei Shiozaki, and Kazutaka Takahashi
EGUsphere, https://doi.org/10.5194/egusphere-2024-1294, https://doi.org/10.5194/egusphere-2024-1294, 2024
Short summary
Short summary
Gamma A is a widespread non-cyanobacterial diazotroph and plays a crucial role for marine ecosystems, but its controlling factors are still largely unknown. This study, for the first time, quantified microzooplankton grazing on Gamma A and revealed significance of grazing pressure on Gamma A distribution around the Kuroshio region. It highlights the importance of top-down controls on Gamma A abundance and the associated nitrogen cycle.
Han Zhang, Guangming Mai, Weicheng Luo, Meng Chen, Ran Duan, and Tuo Shi
Biogeosciences, 21, 2529–2546, https://doi.org/10.5194/bg-21-2529-2024, https://doi.org/10.5194/bg-21-2529-2024, 2024
Short summary
Short summary
We report taxon-specific biogeography of N2-fixing microbes (diazotrophs) driven by Kuroshio intrusion (Kl) into the South China Sea. We show that the composition and distribution of distinct diazotrophic taxa shift with Kl-induced variations in physicochemical parameters of seawater and that Kl shapes diazotrophic community primarily as a stochastic process. This study thus has implications for the distribution of diazotrophs in a future warming ocean, as Kls are projected to intensify.
Celina Rebeca Valença, Luc Beaufort, Gustaaf Marinus Hallegraeff, and Marius Nils Müller
Biogeosciences, 21, 1601–1611, https://doi.org/10.5194/bg-21-1601-2024, https://doi.org/10.5194/bg-21-1601-2024, 2024
Short summary
Short summary
Coccolithophores contribute to the global carbon cycle and their calcite structures (coccoliths) are used as a palaeoproxy to understand past oceanographic conditions. Here, we compared three frequently used methods to estimate coccolith mass from the model species Emiliania huxleyi and the results allow for a high level of comparability between the methods, facilitating future comparisons and consolidation of mass changes observed from ecophysiological and biogeochemical studies.
Ralf Conrad and Peter Claus
Biogeosciences, 21, 1161–1172, https://doi.org/10.5194/bg-21-1161-2024, https://doi.org/10.5194/bg-21-1161-2024, 2024
Short summary
Short summary
Knowledge of carbon isotope fractionation is important for the assessment of the pathways involved in the degradation of organic matter. Formate is an important intermediate during this process. It was mainly converted to carbon dioxide and acetate both in the presence and absence of sulfate. Methane was only a minor product and was mainly formed from the acetate. The acetate was depleted in the heavy carbon atom relative to formate, while the carbon dioxide was enriched.
Mutong Niu, Shu Huang, Wei Hu, Yajie Wang, Wanyun Xu, Wan Wei, Qiang Zhang, Zihan Wang, Donghuan Zhang, Rui Jin, Libin Wu, Junjun Deng, Fangxia Shen, and Pingqing Fu
Biogeosciences, 20, 4915–4930, https://doi.org/10.5194/bg-20-4915-2023, https://doi.org/10.5194/bg-20-4915-2023, 2023
Short summary
Short summary
Sugar compounds in air can trace the source of bioaerosols that affect public health and climate. In rural north China, we observed increased fungal activity at night and less variable bacterial community diversity. Certain night-increasing sugar compounds were more closely related to fungi than bacteria. The fungal community greatly influenced sugar compounds, while bacteria played a limited role. Caution is advised when using sugar compounds to trace airborne microbes, particularly bacteria.
David A. Hutchins, Fei-Xue Fu, Shun-Chung Yang, Seth G. John, Stephen J. Romaniello, M. Grace Andrews, and Nathan G. Walworth
Biogeosciences, 20, 4669–4682, https://doi.org/10.5194/bg-20-4669-2023, https://doi.org/10.5194/bg-20-4669-2023, 2023
Short summary
Short summary
Applications of the mineral olivine are a promising means to capture carbon dioxide via coastal enhanced weathering, but little is known about the impacts on important marine phytoplankton. We examined the effects of olivine dissolution products on species from three major phytoplankton groups: diatoms, coccolithophores, and cyanobacteria. Growth and productivity were generally either unaffected or stimulated, suggesting the effects of olivine on key phytoplankton are negligible or positive.
Ze Ren, Shudan Ye, Hongxuan Li, Xilei Huang, and Luyao Chen
Biogeosciences, 20, 4241–4258, https://doi.org/10.5194/bg-20-4241-2023, https://doi.org/10.5194/bg-20-4241-2023, 2023
Short summary
Short summary
Permafrost thaw initiates thermokarst landscape formation, resulting in distinct new habitats, including degraded permafrost soil, thermokarst lake sediments, and lake water. These distinct habitats harbored differentiated bacterial communities that originated from the same source, differing in diversity, assembly mechanisms, and environmental influences. The results imply ecological consequences of permafrost degradation in the face of further climate change.
Caitlyn A. Hall, Andre van Turnhout, Edward Kavazanjian Jr., Leon A. van Paassen, and Bruce Rittmann
Biogeosciences, 20, 2903–2917, https://doi.org/10.5194/bg-20-2903-2023, https://doi.org/10.5194/bg-20-2903-2023, 2023
Short summary
Short summary
Earthquake-induced soil liquefaction poses a significant global threat. Microbially induced desaturation and precipitation (MIDP) via denitrification is a potentially sustainable, non-disruptive bacteria-driven ground improvement technique under existing structures. We developed a next-generation biogeochemical model to understand and predict the behavior of MIDP in the natural environment to design field-based hazard mitigation treatments.
Juan Pablo Almeida, Lorenzo Menichetti, Alf Ekblad, Nicholas P. Rosenstock, and Håkan Wallander
Biogeosciences, 20, 1443–1458, https://doi.org/10.5194/bg-20-1443-2023, https://doi.org/10.5194/bg-20-1443-2023, 2023
Short summary
Short summary
In forests, trees allocate a significant amount of carbon belowground to support mycorrhizal symbiosis. In northern forests nitrogen normally regulates this allocation and consequently mycorrhizal fungi growth. In this study we demonstrate that in a conifer forest from Sweden, fungal growth is regulated by phosphorus instead of nitrogen. This is probably due to an increase in nitrogen deposition to soils caused by decades of human pollution that has altered the ecosystem nutrient regime.
Yong Zhang, Yong Zhang, Shuai Ma, Hanbing Chen, Jiabing Li, Zhengke Li, Kui Xu, Ruiping Huang, Hong Zhang, Yonghe Han, and Jun Sun
Biogeosciences, 20, 1299–1312, https://doi.org/10.5194/bg-20-1299-2023, https://doi.org/10.5194/bg-20-1299-2023, 2023
Short summary
Short summary
We found that increasing light intensity compensates for the negative effects of low phosphorus (P) availability on cellular protein and nitrogen contents. Reduced P availability, increasing light intensity, and ocean acidification act synergistically to increase cellular contents of carbohydrate and POC and the allocation of POC to carbohydrate. These regulation mechanisms in Emiliania huxleyi could provide vital information for evaluating carbon cycle in marine ecosystems under global change.
Beatriz Gill-Olivas, Jon Telling, Mark Skidmore, and Martyn Tranter
Biogeosciences, 20, 929–943, https://doi.org/10.5194/bg-20-929-2023, https://doi.org/10.5194/bg-20-929-2023, 2023
Short summary
Short summary
Microbial ecosystems have been found in all subglacial environments sampled to date. Yet, little is known of the sources of energy and nutrients that sustain these microbial populations. This study shows that crushing of sedimentary rocks, which contain organic carbon, carbonate and sulfide minerals, along with previously weathered silicate minerals, produces a range of compounds and nutrients which can be utilised by the diverse suite of microbes that inhabit glacier beds.
Federico Fabisik, Benoit Guieysse, Jonathan Procter, and Maxence Plouviez
Biogeosciences, 20, 687–693, https://doi.org/10.5194/bg-20-687-2023, https://doi.org/10.5194/bg-20-687-2023, 2023
Short summary
Short summary
We show, for the first time, that pure cultures of the cyanobacterium Microcystis aeruginosa can synthesize the potent greenhouse gas N2O using nitrite as substrate. Our findings have broad environmental implications because M. aeruginosa is globally found in freshwater ecosystems and is often the dominant species found in algae blooms. Further research is now needed to determine the occurrence and significance of N2O emissions from ecosystems rich with M. aeruginosa.
Fanny Noirmain, Jean-Luc Baray, Frédéric Tridon, Philippe Cacault, Hermine Billard, Guillaume Voyard, Joël Van Baelen, and Delphine Latour
Biogeosciences, 19, 5729–5749, https://doi.org/10.5194/bg-19-5729-2022, https://doi.org/10.5194/bg-19-5729-2022, 2022
Short summary
Short summary
We present a study linking rain, meteorology, and mountain lake phytoplankton dynamics on the basis of a case study at Aydat (France) in September 2020. The air mass origin mainly influences the rain chemical composition, which depends on the type of rain, convective or stratiform. Our results also highlighted a non-negligible presence of photosynthetic cells in rainwater. The impact of the atmospheric forcing on the lake could play a key role in phytoplankton dynamics in the temperate zone.
Sarah A. Brown, John Paul Balmonte, Adrienne Hoarfrost, Sherif Ghobrial, and Carol Arnosti
Biogeosciences, 19, 5617–5631, https://doi.org/10.5194/bg-19-5617-2022, https://doi.org/10.5194/bg-19-5617-2022, 2022
Short summary
Short summary
Bacteria use extracellular enzymes to cut large organic matter to sizes small enough for uptake. We compared the enzymatic response of surface, mid-water, and deep-ocean bacteria to complex natural substrates. Bacteria in surface and mid-depth waters produced a much wider range of enzymes than those in the deep ocean and may therefore consume a broader range of organic matter. The extent to which organic matter is recycled by bacteria depends in part on its residence time at different depths.
Aaron Ferderer, Zanna Chase, Fraser Kennedy, Kai G. Schulz, and Lennart T. Bach
Biogeosciences, 19, 5375–5399, https://doi.org/10.5194/bg-19-5375-2022, https://doi.org/10.5194/bg-19-5375-2022, 2022
Short summary
Short summary
Ocean alkalinity enhancement has the capacity to remove vast quantities of carbon from the atmosphere, but its effect on marine ecosystems is largely unknown. We assessed the effect of increased alkalinity on a coastal phytoplankton community when seawater was equilibrated and not equilibrated with atmospheric CO2. We found that the phytoplankton community was moderately affected by increased alkalinity and equilibration with atmospheric CO2 had little influence on this effect.
Quentin Devresse, Kevin W. Becker, Arne Bendinger, Johannes Hahn, and Anja Engel
Biogeosciences, 19, 5199–5219, https://doi.org/10.5194/bg-19-5199-2022, https://doi.org/10.5194/bg-19-5199-2022, 2022
Short summary
Short summary
Eddies are ubiquitous in the ocean and alter physical, chemical, and biological processes. However, how they affect organic carbon production and consumption is largely unknown. Here we show how an eddy triggers a cascade effect on biomass production and metabolic activities of phyto- and bacterioplankton. Our results may contribute to the improvement of biogeochemical models used to estimate carbon fluxes in the ocean.
Sania Arif, Heiko Nacke, Elias Schliekmann, Andreas Reimer, Gernot Arp, and Michael Hoppert
Biogeosciences, 19, 4883–4902, https://doi.org/10.5194/bg-19-4883-2022, https://doi.org/10.5194/bg-19-4883-2022, 2022
Short summary
Short summary
The natural enrichment of Chloroflexi (Ktedonobacteria) at the Kilianstollen Marsberg copper mine rocks being exposed to the acidic sulfate-rich leachate led to an investigation of eight metagenomically assembled genomes (MAGs) involved in copper and other transition heavy metal resistance in addition to low pH resistance and aromatic compounds degradation. The present study offers functional insights about a novel cold-adapted Ktedonobacteria MAG extremophily along with other phyla MAGs.
Chunmei Zhang, Huirong Li, Yinxin Zeng, Haitao Ding, Bin Wang, Yangjie Li, Zhongqiang Ji, Yonghong Bi, and Wei Luo
Biogeosciences, 19, 4639–4654, https://doi.org/10.5194/bg-19-4639-2022, https://doi.org/10.5194/bg-19-4639-2022, 2022
Short summary
Short summary
The unique microbial eukaryotic community structure and lower diversity have been demonstrated in five freshwater lakes of the Fildes Peninsula, Antarctica. Stochastic processes and biotic co-occurrence patterns were shown to be important in shaping microbial eukaryotic communities in the area. Our study provides a better understanding of the dynamic patterns and ecological assembly processes of microbial eukaryotic communities in Antarctic oligotrophic lakes (Fildes Peninsula).
Juan Pablo Almeida, Nicholas P. Rosenstock, Susanne K. Woche, Georg Guggenberger, and Håkan Wallander
Biogeosciences, 19, 3713–3726, https://doi.org/10.5194/bg-19-3713-2022, https://doi.org/10.5194/bg-19-3713-2022, 2022
Short summary
Short summary
Fungi living in symbiosis with tree roots can accumulate belowground, forming special tissues than can repel water. We measured the water repellency of organic material incubated belowground and correlated it with fungal growth. We found a positive association between water repellency and root symbiotic fungi. These results are important because an increase in soil water repellency can reduce the release of CO2 from soils into the atmosphere and mitigate the effects of greenhouse gasses.
Karen M. Brandenburg, Björn Rost, Dedmer B. Van de Waal, Mirja Hoins, and Appy Sluijs
Biogeosciences, 19, 3305–3315, https://doi.org/10.5194/bg-19-3305-2022, https://doi.org/10.5194/bg-19-3305-2022, 2022
Short summary
Short summary
Reconstructions of past CO2 concentrations rely on proxy estimates, with one line of proxies relying on the CO2-dependence of stable carbon isotope fractionation in marine phytoplankton. Culturing experiments provide insights into which processes may impact this. We found, however, that the methods with which these culturing experiments are performed also influence 13C fractionation. Caution should therefore be taken when extrapolating results from these experiments to proxy applications.
Weilin Huang, Peter M. van Bodegom, Toni Viskari, Jari Liski, and Nadejda A. Soudzilovskaia
Biogeosciences, 19, 1469–1490, https://doi.org/10.5194/bg-19-1469-2022, https://doi.org/10.5194/bg-19-1469-2022, 2022
Short summary
Short summary
This work focuses on one of the essential pathways of mycorrhizal impact on C cycles: the mediation of plant litter decomposition. We present a model based on litter chemical quality which precludes a conclusive examination of mycorrhizal impacts on soil C. It improves long-term decomposition predictions and advances our understanding of litter decomposition dynamics. It creates a benchmark in quantitatively examining the impacts of plant–microbe interactions on soil C dynamics.
Julie Dinasquet, Estelle Bigeard, Frédéric Gazeau, Farooq Azam, Cécile Guieu, Emilio Marañón, Céline Ridame, France Van Wambeke, Ingrid Obernosterer, and Anne-Claire Baudoux
Biogeosciences, 19, 1303–1319, https://doi.org/10.5194/bg-19-1303-2022, https://doi.org/10.5194/bg-19-1303-2022, 2022
Short summary
Short summary
Saharan dust deposition of nutrients and trace metals is crucial to microbes in the Mediterranean Sea. Here, we tested the response of microbial and viral communities to simulated dust deposition under present and future conditions of temperature and pH. Overall, the effect of the deposition was dependent on the initial microbial assemblage, and future conditions will intensify microbial responses. We observed effects on trophic interactions, cascading all the way down to viral processes.
Ralf Conrad, Pengfei Liu, and Peter Claus
Biogeosciences, 18, 6533–6546, https://doi.org/10.5194/bg-18-6533-2021, https://doi.org/10.5194/bg-18-6533-2021, 2021
Short summary
Short summary
Acetate is an important intermediate during the anaerobic degradation of organic matter. It is consumed by methanogenic and sulfidogenic microorganisms accompanied by stable carbon isotope fractionation. We determined isotope fractionation under different conditions in two paddy soils and two lake sediments and also determined the composition of the microbial communities. Despite a relatively wide range of experimental conditions, the range of fractionation factors was quite moderate.
Natalie R. Cohen, Abigail E. Noble, Dawn M. Moran, Matthew R. McIlvin, Tyler J. Goepfert, Nicholas J. Hawco, Christopher R. German, Tristan J. Horner, Carl H. Lamborg, John P. McCrow, Andrew E. Allen, and Mak A. Saito
Biogeosciences, 18, 5397–5422, https://doi.org/10.5194/bg-18-5397-2021, https://doi.org/10.5194/bg-18-5397-2021, 2021
Short summary
Short summary
A previous study documented an intense hydrothermal plume in the South Pacific Ocean; however, the iron release associated with this plume and the impact on microbiology were unclear. We describe metal concentrations associated with multiple hydrothermal plumes in this region and protein signatures of plume-influenced microbes. Our findings demonstrate that resources released from these systems can be transported away from their source and may alter the physiology of surrounding microbes.
Sabyasachi Bhattacharya, Tarunendu Mapder, Svetlana Fernandes, Chayan Roy, Jagannath Sarkar, Moidu Jameela Rameez, Subhrangshu Mandal, Abhijit Sar, Amit Kumar Chakraborty, Nibendu Mondal, Sumit Chatterjee, Bomba Dam, Aditya Peketi, Ranadhir Chakraborty, Aninda Mazumdar, and Wriddhiman Ghosh
Biogeosciences, 18, 5203–5222, https://doi.org/10.5194/bg-18-5203-2021, https://doi.org/10.5194/bg-18-5203-2021, 2021
Short summary
Short summary
Physicochemical determinants of microbiome architecture across continental shelves–slopes are unknown, so we explored the geomicrobiology along 3 m sediment horizons of seasonal (shallow coastal) and perennial (deep sea) hypoxic zones of the Arabian Sea. Nature, concentration, and fate of the organic matter delivered to the sea floor were found to shape the microbiome across the western Indian margin, under direct–indirect influence of sedimentation rate and water column O2 level.
Aditi Sengupta, Sarah J. Fansler, Rosalie K. Chu, Robert E. Danczak, Vanessa A. Garayburu-Caruso, Lupita Renteria, Hyun-Seob Song, Jason Toyoda, Jacqueline Hager, and James C. Stegen
Biogeosciences, 18, 4773–4789, https://doi.org/10.5194/bg-18-4773-2021, https://doi.org/10.5194/bg-18-4773-2021, 2021
Short summary
Short summary
Conceptual models link microbes with the environment but are untested. We test a recent model using riverbed sediments. We exposed sediments to disturbances, going dry and becoming wet again. As the length of dry conditions got longer, there was a sudden shift in the ecology of microbes, chemistry of organic matter, and rates of microbial metabolism. We propose a new model based on feedbacks initiated by disturbance that cascade across biological, chemical, and functional aspects of the system.
Cora Hörstmann, Eric J. Raes, Pier Luigi Buttigieg, Claire Lo Monaco, Uwe John, and Anya M. Waite
Biogeosciences, 18, 3733–3749, https://doi.org/10.5194/bg-18-3733-2021, https://doi.org/10.5194/bg-18-3733-2021, 2021
Short summary
Short summary
Microbes are the main drivers of productivity and nutrient cycling in the ocean. We present a combined approach assessing C and N uptake and microbial community diversity across ecological provinces in the Southern Ocean and southern Indian Ocean. Provinces showed distinct genetic fingerprints, but microbial activity varied gradually across regions, correlating with nutrient concentrations. Our study advances the biogeographic understanding of microbial diversity across C and N uptake regimes.
Nimrod Wieler, Tali Erickson Gini, Osnat Gillor, and Roey Angel
Biogeosciences, 18, 3331–3342, https://doi.org/10.5194/bg-18-3331-2021, https://doi.org/10.5194/bg-18-3331-2021, 2021
Short summary
Short summary
Biological rock crusts (BRCs) are common microbial-based assemblages covering rocks in drylands. BRCs play a crucial role in arid environments because of the limited activity of plants and soil. Nevertheless, BRC development rates have never been dated. Here we integrated archaeological, microbiological and geological methods to provide a first estimation of the growth rate of BRCs under natural conditions. This can serve as an affordable dating tool in archaeological sites in arid regions.
Michal Elul, Maxim Rubin-Blum, Zeev Ronen, Itay Bar-Or, Werner Eckert, and Orit Sivan
Biogeosciences, 18, 2091–2106, https://doi.org/10.5194/bg-18-2091-2021, https://doi.org/10.5194/bg-18-2091-2021, 2021
Mindaugas Zilius, Irma Vybernaite-Lubiene, Diana Vaiciute, Donata Overlingė, Evelina Grinienė, Anastasija Zaiko, Stefano Bonaglia, Iris Liskow, Maren Voss, Agneta Andersson, Sonia Brugel, Tobia Politi, and Paul A. Bukaveckas
Biogeosciences, 18, 1857–1871, https://doi.org/10.5194/bg-18-1857-2021, https://doi.org/10.5194/bg-18-1857-2021, 2021
Short summary
Short summary
In fresh and brackish waters, algal blooms are often dominated by cyanobacteria, which have the ability to utilize atmospheric nitrogen. Cyanobacteria are also unusual in that they float to the surface and are dispersed by wind-driven currents. Their patchy and dynamic distribution makes it difficult to track their abundance and quantify their effects on nutrient cycling. We used remote sensing to map the distribution of cyanobacteria in a large Baltic lagoon and quantify their contributions.
Saly Jaber, Muriel Joly, Maxence Brissy, Martin Leremboure, Amina Khaled, Barbara Ervens, and Anne-Marie Delort
Biogeosciences, 18, 1067–1080, https://doi.org/10.5194/bg-18-1067-2021, https://doi.org/10.5194/bg-18-1067-2021, 2021
Short summary
Short summary
Our study is of interest to atmospheric scientists and environmental microbiologists, as we show that clouds can be considered a medium where bacteria efficiently degrade and transform amino acids, in competition with chemical processes. As current atmospheric multiphase models are restricted to chemical degradation of organic compounds, our conclusions motivate further model development.
Romie Tignat-Perrier, Aurélien Dommergue, Alban Thollot, Olivier Magand, Timothy M. Vogel, and Catherine Larose
Biogeosciences, 17, 6081–6095, https://doi.org/10.5194/bg-17-6081-2020, https://doi.org/10.5194/bg-17-6081-2020, 2020
Short summary
Short summary
The adverse atmospheric environmental conditions do not appear suited for microbial life. We conducted the first global comparative metagenomic analysis to find out if airborne microbial communities might be selected by their ability to resist these adverse conditions. The relatively higher concentration of fungi led to the observation of higher proportions of stress-related functions in air. Fungi might likely resist and survive atmospheric physical stress better than bacteria.
Yanhong Lu, Shunyan Cheung, Ling Chen, Shuh-Ji Kao, Xiaomin Xia, Jianping Gan, Minhan Dai, and Hongbin Liu
Biogeosciences, 17, 6017–6032, https://doi.org/10.5194/bg-17-6017-2020, https://doi.org/10.5194/bg-17-6017-2020, 2020
Short summary
Short summary
Through a comprehensive investigation, we observed differential niche partitioning among diverse ammonia-oxidizing archaea (AOA) sublineages in a typical subtropical estuary. Distinct AOA communities observed at DNA and RNA levels suggested that a strong divergence in ammonia-oxidizing activity among different AOA groups occurs. Our result highlights the importance of identifying major ammonia oxidizers at RNA level in future studies.
Anna-Neva Visser, Scott D. Wankel, Pascal A. Niklaus, James M. Byrne, Andreas A. Kappler, and Moritz F. Lehmann
Biogeosciences, 17, 4355–4374, https://doi.org/10.5194/bg-17-4355-2020, https://doi.org/10.5194/bg-17-4355-2020, 2020
Short summary
Short summary
This study focuses on the chemical reaction between Fe(II) and nitrite, which has been reported to produce high levels of the greenhouse gas N2O. We investigated the extent to which dead biomass and Fe(II) minerals might enhance this reaction. Here, nitrite reduction was highest when both additives were present but less pronounced if only Fe(II) minerals were added. Both reaction systems show distinct differences, rather low N2O levels, and indicated the abiotic production of N2.
Lisa Tanet, Séverine Martini, Laurie Casalot, and Christian Tamburini
Biogeosciences, 17, 3757–3778, https://doi.org/10.5194/bg-17-3757-2020, https://doi.org/10.5194/bg-17-3757-2020, 2020
Short summary
Short summary
Bioluminescent bacteria, the most abundant light-emitting organisms in the ocean, can be free-living, be symbiotic or colonize organic particles. This review suggests that they act as a visual target and may indirectly influence the sequestration of biogenic carbon in oceans by increasing the attraction rate for consumers. We summarize the instrumentation available to quantify this impact in future studies and propose synthetic figures integrating these ecological and biogeochemical concepts.
Michael Lintner, Bianca Biedrawa, Julia Wukovits, Wolfgang Wanek, and Petra Heinz
Biogeosciences, 17, 3723–3732, https://doi.org/10.5194/bg-17-3723-2020, https://doi.org/10.5194/bg-17-3723-2020, 2020
Short summary
Short summary
Foraminifera are unicellular marine organisms that play an important role in the marine element cycle. Changes of environmental parameters such as salinity or temperature have a significant impact on the faunal assemblages. Our experiments show that changing salinity in the German Wadden Sea immediately influences the foraminiferal community. It seems that A. tepida is better adapted to salinity fluctuations than H. germanica.
Kathrin Busch, Ulrike Hanz, Furu Mienis, Benjamin Mueller, Andre Franke, Emyr Martyn Roberts, Hans Tore Rapp, and Ute Hentschel
Biogeosciences, 17, 3471–3486, https://doi.org/10.5194/bg-17-3471-2020, https://doi.org/10.5194/bg-17-3471-2020, 2020
Short summary
Short summary
Seamounts are globally abundant submarine structures that offer great potential to study the impacts and interactions of environmental gradients at a single geographic location. In an exemplary way, we describe potential mechanisms by which a seamount can affect the structure of pelagic and benthic (sponge-)associated microbial communities. We conclude that the geology, physical oceanography, biogeochemistry, and microbiology of seamounts are even more closely linked than currently appreciated.
Alexander Bratek, Justus E. E. van
Beusekom, Andreas Neumann, Tina Sanders, Jana Friedrich, Kay-Christian Emeis, and Kirstin Dähnke
Biogeosciences, 17, 2839–2851, https://doi.org/10.5194/bg-17-2839-2020, https://doi.org/10.5194/bg-17-2839-2020, 2020
Short summary
Short summary
The following paper highlights the importance of benthic N-transformation rates in different sediment types in the southern North Sea as a source of fixed nitrogen for primary producers and also as a sink of fixed nitrogen. Sedimentary fluxes of dissolved inorganic nitrogen support ∼7 to 59 % of the average annual primary production. Semi-permeable and permeable sediments contribute ∼68 % of the total benthic N2 production rates, counteracting eutrophication in the southern North Sea.
Sabine Haalboom, David M. Price, Furu Mienis, Judith D. L. van Bleijswijk, Henko C. de Stigter, Harry J. Witte, Gert-Jan Reichart, and Gerard C. A. Duineveld
Biogeosciences, 17, 2499–2519, https://doi.org/10.5194/bg-17-2499-2020, https://doi.org/10.5194/bg-17-2499-2020, 2020
Short summary
Short summary
Mineral mining in deep-sea hydrothermal settings will lead to the formation of plumes of fine-grained, chemically reactive, suspended matter. Understanding how natural hydrothermal plumes evolve as they disperse from their source, and how they affect their surrounding environment, may help in characterising the behaviour of the diluted part of mining plumes. The natural plume provided a heterogeneous, geochemically enriched habitat conducive to the development of a distinct microbial ecology.
Noelle A. Held, Eric A. Webb, Matthew M. McIlvin, David A. Hutchins, Natalie R. Cohen, Dawn M. Moran, Korinna Kunde, Maeve C. Lohan, Claire Mahaffey, E. Malcolm S. Woodward, and Mak A. Saito
Biogeosciences, 17, 2537–2551, https://doi.org/10.5194/bg-17-2537-2020, https://doi.org/10.5194/bg-17-2537-2020, 2020
Short summary
Short summary
Trichodesmium is a globally important marine nitrogen fixer that stimulates primary production in the surface ocean. We surveyed metaproteomes of Trichodesmium populations across the North Atlantic and other oceans, and we found that they experience simultaneous phosphate and iron stress because of the biophysical limits of nutrient uptake. Importantly, nitrogenase was most abundant during co-stress, indicating the potential importance of this phenotype to global nitrogen and carbon cycling.
Helmke Hepach, Claire Hughes, Karen Hogg, Susannah Collings, and Rosie Chance
Biogeosciences, 17, 2453–2471, https://doi.org/10.5194/bg-17-2453-2020, https://doi.org/10.5194/bg-17-2453-2020, 2020
Short summary
Short summary
Tropospheric iodine takes part in numerous atmospheric chemical cycles, including tropospheric ozone destruction and aerosol formation. Due to its significance for atmospheric processes, it is crucial to constrain its sources and sinks. This paper aims at investigating and understanding features of biogenic iodate-to-iodide reduction in microalgal monocultures. We find that phytoplankton senescence may play a crucial role in the release of iodide to the marine environment.
Roger D. Finlay, Shahid Mahmood, Nicholas Rosenstock, Emile B. Bolou-Bi, Stephan J. Köhler, Zaenab Fahad, Anna Rosling, Håkan Wallander, Salim Belyazid, Kevin Bishop, and Bin Lian
Biogeosciences, 17, 1507–1533, https://doi.org/10.5194/bg-17-1507-2020, https://doi.org/10.5194/bg-17-1507-2020, 2020
Short summary
Short summary
Effects of biological activity on mineral weathering operate at scales ranging from short-term, microscopic interactions to global, evolutionary timescale processes. Microorganisms have had well-documented effects at large spatio-temporal scales, but to establish the quantitative significance of microscopic measurements for field-scale processes, higher-resolution studies of liquid chemistry at local weathering sites and improved upscaling to soil-scale dissolution rates are still required.
Christine Rooks, James Kar-Hei Fang, Pål Tore Mørkved, Rui Zhao, Hans Tore Rapp, Joana R. Xavier, and Friederike Hoffmann
Biogeosciences, 17, 1231–1245, https://doi.org/10.5194/bg-17-1231-2020, https://doi.org/10.5194/bg-17-1231-2020, 2020
Short summary
Short summary
Sponge grounds are known as nutrient sources, providing nitrate and ammonium to the ocean. We found that they also can do the opposite: in six species from Arctic and North Atlantic sponge grounds, we measured high rates of denitrification, which remove these nutrients from the sea. Rates were highest when the sponge tissue got low in oxygen, which happens when sponges stop pumping because of stress. Sponge grounds may become nutrient sinks when exposed to stress.
Cheng Li, Clare E. Reimers, and Yvan Alleau
Biogeosciences, 17, 597–607, https://doi.org/10.5194/bg-17-597-2020, https://doi.org/10.5194/bg-17-597-2020, 2020
Short summary
Short summary
Novel filamentous cable bacteria that grow in the top layer of intertidal mudflat sediment were attracted to electrodes poised at a positive electrical potential. Several diverse morphologies of Desulfobulbaceae filaments, cells, and colonies were observed on the electrode surface. These observations provide information to suggest conditions that will induce cable bacteria to perform electron donation to an electrode, informing future experiments that culture cable bacteria outside of sediment.
Marie Maßmig, Jan Lüdke, Gerd Krahmann, and Anja Engel
Biogeosciences, 17, 215–230, https://doi.org/10.5194/bg-17-215-2020, https://doi.org/10.5194/bg-17-215-2020, 2020
Short summary
Short summary
Little is known about the rates of bacterial element cycling in oxygen minimum zones (OMZs). We measured bacterial production and rates of extracellular hydrolytic enzymes at various in situ oxygen concentrations in the OMZ off Peru. Our field data show unhampered bacterial activity at low oxygen concentrations. Meanwhile bacterial degradation of organic matter substantially contributed to the formation of the OMZ.
Anna T. Kunert, Mira L. Pöhlker, Kai Tang, Carola S. Krevert, Carsten Wieder, Kai R. Speth, Linda E. Hanson, Cindy E. Morris, David G. Schmale III, Ulrich Pöschl, and Janine Fröhlich-Nowoisky
Biogeosciences, 16, 4647–4659, https://doi.org/10.5194/bg-16-4647-2019, https://doi.org/10.5194/bg-16-4647-2019, 2019
Short summary
Short summary
A screening of more than 100 strains from 65 different species revealed that the ice nucleation activity within the fungal genus Fusarium is more widespread than previously assumed. Filtration experiments suggest that the single cell-free Fusarium IN is smaller than 100 kDa (~ 6 nm) and that aggregates can be formed in solution. Exposure experiments, freeze–thaw cycles, and long-term storage tests demonstrate a high stability of Fusarium IN under atmospherically relevant conditions.
Qing Wang, Renbin Zhu, Yanling Zheng, Tao Bao, and Lijun Hou
Biogeosciences, 16, 4113–4128, https://doi.org/10.5194/bg-16-4113-2019, https://doi.org/10.5194/bg-16-4113-2019, 2019
Short summary
Short summary
We investigated abundance, potential activity, and diversity of soil ammonia-oxidizing archaea (AOA) and bacteria (AOB) in five Antarctic tundra patches, including penguin colony, seal colony, and tundra marsh. We have found (1) sea animal colonization increased AOB population size.; (2) AOB contributed to ammonia oxidation rates more than AOA in sea animal colonies; (3) community structures of AOB and AOA were closely related to soil biogeochemical processes associated with animal activities.
Cited articles
Anderson, T. R. and Turley, C. M.: Low bacterial growth efficiency in the oligotrophic eastern Mediterranean Sea: a modelling analysis, J. Plankton Res., 25, 1011–1019, https://doi.org/10.1093/plankt/25.9.1011, 2003.
Alves, C., Vicente, A., Pio, C., Kiss, G., Hoffer, A., Decesari, S.,
Prevôt, A. S., Minguillón, M. C., Querol, X., and Hillamo, R.:
Organic compounds in aerosols from selected European sites – Biogenic versus
anthropogenic sources, Atmos. Environ., 59, 243–255, 2012.
Amato, F., Alastuey, A., Karanasiou, A., Lucarelli, F., Nava, S., Calzolai, G., Severi, M., Becagli, S., Gianelle, V. L., Colombi, C., Alves, C., Custódio, D., Nunes, T., Cerqueira, M., Pio, C., Eleftheriadis, K., Diapouli, E., Reche, C., Minguillón, M. C., Manousakas, M.-I., Maggos, T., Vratolis, S., Harrison, R. M., and Querol, X.: AIRUSE-LIFE+: a harmonized PM speciation and source apportionment in five southern European cities, Atmos. Chem. Phys., 16, 3289–3309, https://doi.org/10.5194/acp-16-3289-2016, 2016.
Ammermann, J. W., Furhman, J. A., Hagström, A., and Azam, F.:
Bacterioplankton growth in sea water: I. Growth kinetics and cellular
characteristics in sea water cultures, Mar. Ecol.-Prog. Ser., 18, 31–39,
1984.
Aminot, A. and Kerouel., R.: Dosage automatique des nutriments dans les eaux marines. Méthodes en flux continu, MEDD Editions Quae, Brest, 188 pp., 2007.
Azam, F.: Microbial Control of Oceanic Carbon Flux: The Plot Thickens,
Science, 280, 694–696, https://doi.org/10.1126/science.280.5364.694, 1998.
Azam, F., Fenchel, T., Field, J. G., Gray, J., Meyer-Reil, L., and
Thingstad, F.: The ecological role of water-column microbes in the sea,
Mar. Ecol.-Prog. Ser., 10, 257–263, 1983.
Barhoumi, B., Castro-Jiménez, J., Guigue, C., Goutx, M.,
Sempéré, R., Derouiche, A., Achour, A., Touil, S., Driss, M. R., and
Tedetti, M.: Levels and risk assessment of hydrocarbons and organochlorines
in aerosols from a North African coastal city (Bizerte, Tunisia),
Environ. Pollut., 240, 422–431, 2018.
Biddanda, B., Opsahl, S., and Benner, R.: Plankton respiration and carbon
flux through bacterioplankton on the Louisiana shelf, Limnol. Oceanogr., 39,
1259–1275, 1994.
Browning, T. J., Achterberg, E. P., Yong, J. C., Rapp, I., Utermann, C.,
Engel, A., and Moore, C. M.: Iron limitation of microbial phosphorus
acquisition in the tropical North Atlantic, Nat. Commun., 8, 15465,
https://doi.org/10.1038/ncomms15465, 2017.
Bif, M. B., Hansell, D. A., and Popendorf, K. J.: Controls on the fate of
dissolved organic carbon under contrasting upwelling conditions, Front. Mar. Sci., 5, 463, https://doi.org/10.3389/Fmars.2018.00463, 2018.
Bunse, C. and Pinhassi, J.: Marine bacterioplankton seasonal succession
dynamics, Trends Microbiol., 25, 494–505, 2017.
Carlson, A.: Production and Removal Processes, in: Biogeochemistry of dissolved organic matter, 1st Edn., Hansell, D. and Carlson, A., Academic Press, London, 91–151, 2002.
Carlson, C. A. and Ducklow, H. W.: Growth of bacterioplankton and
consumption of dissolved organic carbon in the Sargasso Sea, Aquat.
Microb. Ecol., 10, 69–85, 1996.
Carlson, C. A., Ducklow, H. W., and Michaels, A. F.: annual flux of
dissolved organic-carbon from the euphotic zone in the northwestern Sargasso
Sea, Nature, 371, 405–408, https://doi.org/10.1038/371405a0, 1994.
Cavalli, F., Viana, M., Yttri, K. E., Genberg, J., and Putaud, J.-P.: Toward a standardised thermal-optical protocol for measuring atmospheric organic and elemental carbon: the EUSAAR protocol, Atmos. Meas. Tech., 3, 79–89, https://doi.org/10.5194/amt-3-79-2010, 2010.
Conen, F., Morris, C. E., Leifeld, J., Yakutin, M. V., and Alewell, C.: Biological residues define the ice nucleation properties of soil dust, Atmos. Chem. Phys., 11, 9643–9648, https://doi.org/10.5194/acp-11-9643-2011, 2011.
Dall'Osto, M., Harrison, R. M., Highwood, E. J., O'Dowd, C., Ceburnis, D.,
Querol, X., and Achterberg, E. P.: Variation of the mixing state of Saharan
dust particles with atmospheric transport, Atmos. Environ., 44,
3135–3146, 2010.
De Leeuw, G., Guieu, C., Arneth, A., Bellouin, N., Bopp, L., Boyd, P. W., van der Gon, H. A. D., Desboeufs, K. V., Dulac, F., and Facchini, M. C.: Ocean–atmosphere interactions of particles, in: Ocean-Atmosphere Interactions of Gases and Particles, Springer, Berlin, 171–246, 2014.
del Giorgio, P. A. and Cole, J. J.: Bacterial growth efficiency in natural
aquatic systems, Annu. Rev. Ecol. Syst., 29, 503–541,
https://doi.org/10.1146/annurev.ecolsys.29.1.503, 1998.
del Giorgio, P. A., Cole, J. J., and Cimbleris, A.: Respiration rates in
bacteria exceed phytoplankton production in unproductive aquatic systems,
Nature, 385, 148–151, 1997.
Djaoudi, K., Van Wambeke, F., Barani, A., Hélias-Nunige, S., Sempere,
R., and Pulido-Villena, E.: Atmospheric fluxes of soluble organic C, N, and
P to the Mediterranean Sea: Potential biogeochemical implications in the
surface layer, Prog. Oceanogr., 163, 59–69, 2018.
Duce, R. A., Liss, P. S., Merrill, J. T., Atlas, E. L., Buat-Menard, P., Hicks, B. B., Miller, J. M., Prospero, J. M., Arimoto, R., Church, T. M., Ellis, W., Galloway, J. N., Hansen, L., Jickells, T. D., Knap, A. H., Reinhardt, K. H., Schneider, B., Soudine, A., Tokos, J. J., Tsunogai, S., Wollast, R., and Zhou, M.: The atmospheric input of trace species to the world ocean, Global Biogeochem. Cy., 5, 193–259, https://doi.org/10.1029/91GB01778, 1991.
Duce, R. A., LaRoche, J., Altieri, K., Arrigo, K. R., Baker, A. R., Capone,
D. G., Cornell, S., Dentener, F., Galloway, J., Ganeshram, R. S., Geider, R.
J., Jickells, T., Kuypers, M. M., Langlois, R., Liss, P. S., Liu, S. M.,
Middelburg, J. J., Moore, C. M., Nickovic, S., Oschlies, A., Pedersen, T.,
Prospero, J., Schlitzer, R., Seitzinger, S., Sorensen, L. L., Uematsu, M.,
Ulloa, O., Voss, M., Ward, B., and Zamora, L.: Impacts of atmospheric
anthropogenic nitrogen on the open ocean, Science, 320, 893–897,
https://doi.org/10.1126/science.1150369, 2008.
Eglinton, T. I., Eglinton, G., Dupont, L., Sholkovitz, E., Montluçon,
D., and Reddy, C.: Composition, age, and provenance of organic matter in NW
African dust over the Atlantic Ocean, Geochem. Geophy. Geosy.,
3, 1–27, 2002.
Falkovich, A. H., Schkolnik, G., Ganor, E., and Rudich, Y.: Adsorption of
organic compounds pertinent to urban environments onto mineral dust
particles, J. Geophys. Res.-Atmos., 109, D02208,
https://doi.org/10.1029/2003jd003919, 2004.
Fenchel, T. and Blackburn, T. H.: Bacteria and mineral cycling, Academic
Press, Inc. (London) Ltd., 1979.
Fuhrman, J.: Bacterioplankton Roles in Cycling of Organic Matter: The Microbial Food Web, in: Primary Productivity and Biogeochemical Cycles in the Sea, edited by: Falkowski, P. G., Woodhead, A. D., and Vivirito, K., Environmental Science Research, Vol. 43, Springer, Boston, MA, https://doi.org/10.1007/978-1-4899-0762-2_20, 1992.
Galletti, Y., Becagli, S., di Sarra, A., Gonnelli, M., Pulido-Villena, E., Sferlazzo, D. M., Traversi, R., Vestri, S., and Santinelli, C.: Atmospheric deposition of organic matter at a remote site in the central Mediterranean Sea: implications for the marine ecosystem, Biogeosciences, 17, 3669–3684, https://doi.org/10.5194/bg-17-3669-2020, 2020.
Gasol, J. M. and Kirchman, D. L.: The evolution of microbial ecology of the ocean, in: Microbial ecology of the oceans, edited by: Gasol, J. M., Kirchman, D. L., 4rd Edn., John Wiley & Sons, Hoboken, NJ, USA, 528 pp., 2018.
Goldman, J. C., Caron, D. A., and Dennett, M. R.: Regulation of gross growth efficiency and ammonium regeneration in bacteria by substrate C : N ratio 1, Limnol. Oceanogr., 32, 1239–1252, 1987.
Guieu, C., Aumont, O., Paytan, A., Bopp, L., Law, C. S., Mahowald, N.,
Achterberg, E. P., Maranon, E., Salihoglu, B., Crise, A., Wagener, T.,
Herut, B., Desboeufs, K., Kanakidou, M., Olgun, N., Peters, F.,
Pulido-Villena, E., Tovar-Sanchez, A., and Volker, C.: The significance of
the episodic nature of atmospheric deposition to Low Nutrient Low
Chlorophyll regions, Global Biogeochem. Cy., 28, 1179–1198,
https://doi.org/10.1002/2014gb004852, 2014.
Guyennon, A., Baklouti, M., Diaz, F., Palmieri, J., Beuvier, J., Lebaupin-Brossier, C., Arsouze, T., Béranger, K., Dutay, J.-C., and Moutin, T.: New insights into the organic carbon export in the Mediterranean Sea from 3-D modeling, Biogeosciences, 12, 7025–7046, https://doi.org/10.5194/bg-12-7025-2015, 2015.
Hansell, D. A.: Dissolved organic carbon reference material program, EOS
T. Am. Geophys. Un., 86, 318–318, 2005.
Hansell, D. A., Carlson, C. A., Repeta, D. J., and Schlitzer, R.: Dissolved
organic matter in the ocean a controversy stimulates new insights,
Oceanography, 22, 202–211, 2009.
Herut, B., Rahav, E., Tsagaraki, T. M., Giannakourou, A., Tsiola, A.,
Psarra, S., Lagaria, A., Papageorgiou, N., Mihalopoulos, N., Theodosi, C.
N., Violaki, K., Stathopoulou, E., Scoullos, M., Krom, M. D., Stockdale, A.,
Shi, Z., Berman-Frank, I., Meador, T. B., Tanaka, T., and Paraskevi, P.: The
Potential Impact of Saharan Dust and Polluted Aerosols on Microbial
Populations in the East Mediterranean Sea, an Overview of a Mesocosm
Experimental Approach, Front. Mar. Sci., 3, 226,
https://doi.org/10.3389/fmars.2016.00226, 2016.
Hoppe, H.-G.: Significance of exoenzymatic activities in the ecology of
brackish water: measurements by means of methylumbelliferyl-substrates,
Mar. Ecol.-Prog. Ser., 11, 299–308, 1983.
Jaffrezo, J.-L., Aymoz, G., Delaval, C., and Cozic, J.: Seasonal variations of the water soluble organic carbon mass fraction of aerosol in two valleys of the French Alps, Atmos. Chem. Phys., 5, 2809–2821, https://doi.org/10.5194/acp-5-2809-2005, 2005.
Jiao, N., Herndl, G. J., Hansell, D. A., Benner, R., Kattner, G., Wilhelm,
S. W., Kirchman, D. L., Weinbauer, M. G., Luo, T. W., Chen, F., and Azam,
F.: Microbial production of recalcitrant dissolved organic matter: long-term
carbon storage in the global ocean, Nat. Rev. Microbiol., 8, 593–599,
https://doi.org/10.1038/nrmicro2386, 2010.
Jickells, T. D., An, Z. S., Andersen, K. K., Baker, A. R., Bergametti, G.,
Brooks, N., Cao, J. J., Boyd, P. W., Duce, R. A., Hunter, K. A., Kawahata,
H., Kubilay, N., laRoche, J., Liss, P. S., Mahowald, N., Prospero, J. M.,
Ridgwell, A. J., Tegen, I., and Torres, R.: Global Iron Connections Between
Desert Dust, Ocean Biogeochemistry, and Climate, Science, 308, 67–71,
https://doi.org/10.1126/science.1105959, 2005.
Jordi, A., Basterretxea, G., Tovar-Sanchez, A., Alastuey, A., and Querol,
X.: Copper aerosols inhibit phytoplankton growth in the Mediterranean Sea,
P. Natl. Acad. Sci. USA, 109, 21246–21249, https://doi.org/10.1073/pnas.1207567110,
2012.
Kanakidou, M., Duce, R. A., Prospero, J. M., Baker, A. R., Benitez-Nelson,
C., Dentener, F. J., Hunter, K. A., Liss, P. S., Mahowald, N., Okin, G. S.,
Sarin, M., Tsigaridis, K., Uematsu, M., Zamora, L. M., and Zhu, T.:
Atmospheric fluxes of organic N and P to the global ocean, Global
Biogeochem. Cy., 26, GB3026, https://doi.org/10.1029/2011gb004277, 2012.
Kanakidou, M., Myriokefalitakis, S., and Tsigaridis, K.: Aerosols in
atmospheric chemistry and biogeochemical cycles of nutrients, Environ.
Res. Lett., 13, 063004, https://doi.org/10.1088/1748-9326/Aabcdb, 2018.
Kirchman, D. L.: Processes in Microbial Ecology, 2nd Edn., Vol. 1,
Oxford University Press, Oxford, UK, https://doi.org/10.1093/oso/9780198789406.001.0001,
2018.
Kirchman, D. L., Ducklow, H. W., and Mitchell, R.: Estimates of bacterial
growth from changes in uptake rates and biomass, Appl. Environ. Microb.,
44, 1296–1307, 1982.
Kirchman, D. L., Keil, R. G., Simon, M., and Welschmeyer, N. A.: Biomass and
production of heterotrophic bacterioplancton in the oceanic Sub-Arctic
Pacific, Deep-Sea Res. Pt. I, 40,
967–988, https://doi.org/10.1016/0967-0637(93)90084-g, 1993.
Leaitch, W. R., Macdonald, A. M., Anlauf, K. G., Liu, P. S. K., Toom-Sauntry, D., Li, S.-M., Liggio, J., Hayden, K., Wasey, M. A., Russell, L. M., Takahama, S., Liu, S., van Donkelaar, A., Duck, T., Martin, R. V., Zhang, Q., Sun, Y., McKendry, I., Shantz, N. C., and Cubison, M.: Evidence for Asian dust effects from aerosol plume measurements during INTEX-B 2006 near Whistler, BC, Atmos. Chem. Phys., 9, 3523–3546, https://doi.org/10.5194/acp-9-3523-2009, 2009.
Lechtenfeld, O. J., Hertkorn, N., Shen, Y., Witt, M., and Benner, R.: Marine
sequestration of carbon in bacterial metabolites, Nat. Commun., 6, 6711,
https://doi.org/10.1038/ncomms7711, 2015.
Letelier, R. M., Björkman, K. M., Church, M. J., Hamilton, D. S.,
Mahowald, N. M., Scanza, R. A., Schneider, N., White, A. E., and Karl, D.
M.: Climate-driven oscillation of phosphorus and iron limitation in the
North Pacific Subtropical Gyre, P. Natl. Acad.
Sci. USA, 116, 12720–12728, 2019.
Letscher, R. T. and Moore, J. K.: Preferential remineralization of
dissolved organic phosphorus and non-Redfield DOM dynamics in the global
ocean: Impacts on marine productivity, nitrogen fixation, and carbon export,
Global Biogeochem. Cy., 29, 325–340, https://doi.org/10.1002/2014gb004904, 2015.
Li, C.-T., Zhuang, H.-K., Hsieh, L.-T., Lee, W.-J., and Tsao, M.-C.: PAH
emission from the incineration of three plastic wastes, Environ.
Int., 27, 61–67, 2001.
Lønborg, C. and Álvarez-Salgado, X. A.: Recycling versus export of
bioavailable dissolved organic matter in the coastal ocean and efficiency of
the continental shelf pump, Global Biogeochem. Cy., 26, GB3018, https://doi.org/10.1029/2012GB004353, 2012.
López-Sandoval, D. C., Fernández, A., and Marañón, E.: Dissolved and particulate primary production along a longitudinal gradient in the Mediterranean Sea, Biogeosciences, 8, 815–825, https://doi.org/10.5194/bg-8-815-2011, 2011.
Marañón, E., Fernández, A., Mouriño-Carballido, B.,
Martínez-GarcÍa, S., Teira, E., Cermeño, P., Chouciño, P.,
Huete-Ortega, M., Fernández, E., Calvo-DÍaz, A., Morán, X. A.
G., Bode, A., Moreno-Ostos, E., Varela, M. M., Patey, M. D., and Achterberg,
E. P.: Degree of oligotrophy controls the response of microbial plankton to
Saharan dust, Limnol. Oceanogr., 55, 2339–2352, https://doi.org/10.4319/lo.2010.55.6.2339,
2010.
Marañón, E., Van Wambeke, F., Uitz, J., Boss, E. S., Pérez-Lorenzo, M., Dinasquet, J., Haëntjens, N., Dimier, C., and Taillandier, V.: Deep maxima of phytoplankton biomass, primary production and bacterial production in the Mediterranean Sea during late spring, Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-261, in review, 2020.
Marie, D., Simon, N., Guillou, L., Partensky, F., and Vaulot,
D.: DNA/RNA analysis of phytoplankton by flow cytometry,
in: Current protocols in cytometry, edited by: Robinson, J. P., Darzynkiewicz, Z., Dean, P. N., Dressler, L. G., Rabinovitch, P. S., Stewart, C. C., Tanke, H. J., Wheeless, L. L., John Wiley & Sons, New York, 11–12, https://doi.org/10.1002/0471142956.cy1112s11, 2002.
Marín, I., Nunes, S., Sánchez-Pérez, E. D., Txurruka, E., Antequera, C., Sala, M. M., Marrasé, C., and Peters, F.: Coastal bacterioplankton metabolism is stimulated stronger by anthropogenic aerosols than saharan dust, Front. Mmicrobiol., 8, 2215, https://doi.org/10.3389/fmicb.2017.02215, 2017a.
Marín, I., Nunes, S., Sánchez-Pérez, E. D., Aparicio, F.,
Estrada, M., Marrasé, C., Moreno, T., Wagener, T., Querol, X., and
Peters, F.: Anthropogenic versus mineral aerosols in the stimulation of
microbial planktonic communities in coastal waters of the northwestern
Mediterranean Sea, Sci. Total Environ., 574, 553–568, 2017b.
Markaki, Z., Loye-Pilot, M. D., Violaki, K., Benyahya, L., and Mihalopoulos, N.:
Variability of atmospheric deposition of dissolved nitrogen and phosphorus in the
Mediterranean and possible link to the anomalous seawater N∕P ratio, Mar.
Chem., 120, 187–194, https://doi.org/10.1016/j.marchem.2008.10.005, 2010.
Moran, M. A., Kujawinski, E. B., Stubbins, A., Fatland, R., Aluwihare, L.
I., Buchan, A., Crump, B. C., Dorrestein, P. C., Dyhrman, S. T., and Hess,
N. J.: Deciphering ocean carbon in a changing world, P.
Natl. Acad. Sci. USA, 113, 3143–3151, 2016.
Omar, N. Y. M., Mon, T. C., Rahman, N. A., and Abas, M. R. B.: Distributions
and health risks of polycyclic aromatic hydrocarbons (PAHs) in atmospheric
aerosols of Kuala Lumpur, Malaysia, Sci. Total Environ., 369,
76–81, 2006.
Paris, R., Desboeufs, K. V., Formenti, P., Nava, S., and Chou, C.: Chemical characterisation of iron in dust and biomass burning aerosols during AMMA-SOP0/DABEX: implication for iron solubility, Atmos. Chem. Phys., 10, 4273––4282, https://doi.org/10.5194/acp-10-4273-2010, 2010.
Paytan, A., Mackey, K. R. M., Chen, Y., Lima, I. D., Doney, S. C., Mahowald,
N., Labiosa, R., and Postf, A. F.: Toxicity of atmospheric aerosols on
marine phytoplankton, Proc. Natl. Acad. Sci. USA, 106, 4601–4605,
https://doi.org/10.1073/pnas.0811486106, 2009.
Prospero, J. M., Bullard, J. E., and Hodgkins, R.: High-Latitude Dust Over
the North Atlantic: Inputs from Icelandic Proglacial Dust Storms, Science,
335, 1078–1082, https://doi.org/10.1126/science.1217447, 2012.
Pujo-Pay, M. and Raimbault, P.: Improvement of the wet-oxidation procedure
for simultaneous determination of particulate organic nitrogen and
phosphorus collected on filters, Mar. Ecol.-Prog. Ser., 105,
203–203, 1994.
Pulido-Villena, E., Wagener, T., and Guieu, C.: Bacterial response to dust
pulses in the western Mediterranean: Implications for carbon cycling in the
oligotrophic ocean, Global Biogeochem. Cy., 22, 1–5,
https://doi.org/10.1029/2007GB003091, 2008.
Pulido-Villena, E., Rerolle, V., and Guieu, C.: Transient fertilizing effect
of dust in P-deficient LNLC surface ocean, Geophys. Res. Lett., 37,
1–5, https://doi.org/10.1029/2009gl041415, 2010.
Romera-Castillo, C., Letscher, R. T., and Hansell, D. A.: New nutrients
exert fundamental control on dissolved organic carbon accumulation in the
surface Atlantic Ocean, P. Natl. Acad. Sci. USA,
113, 10497–10502, 2016.
Roshan, S. and DeVries, T.: Efficient dissolved organic carbon production
and export in the oligotrophic ocean, Nat. Commun., 8, 1–8, 2017.
Salma, I., Mészáros, T., and Maenhaut, W.: Mass size distribution of
carbon in atmospheric humic-like substances and water-soluble organic carbon
for an urban environment, J. Aerosol Sci., 56, 53–60, 2013.
Sannigrahi, P., Sullivan, A. P., Weber, R. J., and Ingall, E. D.:
Characterization of water-soluble organic carbon in urban atmospheric
aerosols using solid-state 13C NMR spectroscopy, Environ. Sci.
Technol., 40, 666–672, 2006.
Sipler, R. E. and Bronk, D. A.: Dynamics of dissolved organic nitrogen, in: Biogeochemistry of marine dissolved organic matter, edited by: Hansell, D. and Carlson, A., 2nd Edn., Elsevier, London, 127–232, 2015.
Smith, D. C. and Azam, F.: A simple, economical method for measuring
bacterial protein synthesis rates in seawater using 3H-leucine, Mar. Microb.
Food Webs, 6, 107–114, 1992.
Sullivan, R. C. and Prather, K. A.: Investigations of the diurnal cycle and
mixing state of oxalic acid in individual particles in Asian aerosol
outflow, Environ. Sci. Technol., 41, 8062–8069, 2007.
Theodosi, C., Panagiotopoulos, C., Nouara, A., Zarmpas, P., Nicolaou, P.,
Violaki, K., Kanakidou, M., Sempéré, R., and Mihalopoulos, N.:
Sugars in atmospheric aerosols over the Eastern Mediterranean, Prog.
Oceanogr., 163, 70–81, https://doi.org/10.1016/j.pocean.2017.09.001, 2018.
Tsagaraki, T. M., Herut, B., Rahav, E., Frank, I. R. B., Tsiola, A., Tsapakis, M., Giannakourou, A., Gogou, A., Panagiotopoulos, C., Violaki, K., Psarra, S., Lagaria, A., Christou, E. D., Papageorgiou, N., Zervoudaki, S., de Puelles, M. L. F., Nikolioudakis, N., Meador, T. B., Tanaka, T., Pedrotti, M. L., Krom, M. D., and Pitta, P.: Atmospheric Deposition Effects on Plankton Communities in the Eastern Mediterranean: A Mesocosm Experimental Approach, Front. Mar. Sci., 4, 210,
https://doi.org/10.3389/Fmars.2017.00210, 2017.
Twining, B. S., Baines, S. B., and Fisher, N. S.: Element stoichiometries of
individual plankton cells collected during the Southern Ocean Iron
Experiment (SOFeX), Limnol. Oceanogr., 49, 2115–2128, 2004.
Van Wambeke, F., Christaki, U., and Gaudy, R.: Carbon fluxes from the
microbial food web to mesozooplankton. An approach in the surface layer of a
pelagic area (NW Mediterranean Sea), Oceanol. Acta, 19, 57–66, 1996.
Van Wambeke, F., Pulido, E., Dinasquet, J., Djaoudi, K., Engel, A., Garel, M., Guasco, S., Nunige, S., Taillandier, V., Zäncker, B., and Tamburini, C.: Spatial patterns of biphasic ectoenzymatic kinetics related to biogeochemical properties in the Mediterranean Sea, Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-253, in review, 2020.
Vila-Costa, M., Sebastián, M., Pizarro, M., Cerro-Gálvez, E.,
Lundin, D., Gasol, J. M., and Dachs, J.: Microbial consumption of
organophosphate esters in seawater under phosphorus limited conditions,
Sci. Rep.-UK, 9, 1–11, 2019.
Violaki, K., Bourrin, F., Aubert, D., Kouvarakis, G., Delsaut, N., and
Mihalopoulos, N.: Organic Phosphorus in atmospheric deposition over
Mediterranean Sea: An important missing piece of the P cycle, Prog.
Oceanogr., 163, 50–58, 2018.
Voliotis, A., Prokeš, R., Lammel, G., and Samara, C.: New insights on
humic-like substances associated with wintertime urban aerosols from central
and southern Europe: size-resolved chemical characterization and optical
properties, Atmos. Enviro., 166, 286–299, 2017.
Wu, J. F., Sunda, W., Boyle, E. A., and Karl, D. M.: Phosphate depletion in
the western North Atlantic Ocean, Science, 289, 759–762,
https://doi.org/10.1126/science.289.5480.759, 2000.
Zheng, G., He, K., Duan, F., Cheng, Y., and Ma, Y.: Measurement of humic-like substances in aerosols: A review, Environ. Pollut., 181, 301–314, 2013.
Altmetrics
Final-revised paper
Preprint