Articles | Volume 10, issue 10
https://doi.org/10.5194/bg-10-6267-2013
© Author(s) 2013. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-10-6267-2013
© Author(s) 2013. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
07 Oct 2013
Research article |
| 07 Oct 2013
Vertical distribution of methane oxidation and methanotrophic response to elevated methane concentrations in stratified waters of the Arctic fjord Storfjorden (Svalbard, Norway)
S. Mau
Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany
Alfred Wegener Institute for Marine and Polar Research, Am Handelshafen 12, 27570 Bremerhaven, Germany
J. Blees
Department of Environmental Sciences, University of Basel, Bernoullistrasse 30, 4056 Basel, Switzerland
E. Helmke
Alfred Wegener Institute for Marine and Polar Research, Am Handelshafen 12, 27570 Bremerhaven, Germany
H. Niemann
Department of Environmental Sciences, University of Basel, Bernoullistrasse 30, 4056 Basel, Switzerland
Alfred Wegener Institute for Marine and Polar Research, Am Handelshafen 12, 27570 Bremerhaven, Germany
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Tim R. de Groot, Julia C. Engelmann, Pierre Ramond, Julia Diorgio, Judith van Bleiswijk, and Helge Niemann
EGUsphere, https://doi.org/10.5194/egusphere-2025-316, https://doi.org/10.5194/egusphere-2025-316, 2025
This preprint is open for discussion and under review for Biogeosciences (BG).
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In the ocean, the potent greenhouse gas methane is largely produced – but also consumed – in coastal systems before reaching the atmosphere. Rising temperatures and shifting precipitation patterns will likely impact the community composition of aerobic methanotrophic bacteria (MOB). Experiments with North Sea and Wadden Sea water showed that methane availability increased MOB abundance but that different MOB types could thrive under drastically changed environmental conditions.
Tim René de Groot, Anne Margriet Mol, Katherine Mesdag, Pierre Ramond, Rachel Ndhlovu, Julia Catherine Engelmann, Thomas Röckmann, and Helge Niemann
Biogeosciences, 20, 3857–3872, https://doi.org/10.5194/bg-20-3857-2023, https://doi.org/10.5194/bg-20-3857-2023, 2023
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This study investigates methane dynamics in the Wadden Sea. Our measurements revealed distinct variations triggered by seasonality and tidal forcing. The methane budget was higher in warmer seasons but surprisingly high in colder seasons. Methane dynamics were amplified during low tides, flushing the majority of methane into the North Sea or releasing it to the atmosphere. Methanotrophic activity was also elevated during low tide but mitigated only a small fraction of the methane efflux.
Muhammed Fatih Sert, Helge Niemann, Eoghan P. Reeves, Mats A. Granskog, Kevin P. Hand, Timo Kekäläinen, Janne Jänis, Pamela E. Rossel, Bénédicte Ferré, Anna Silyakova, and Friederike Gründger
Biogeosciences, 19, 2101–2120, https://doi.org/10.5194/bg-19-2101-2022, https://doi.org/10.5194/bg-19-2101-2022, 2022
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We investigate organic matter composition in the Arctic Ocean water column. We collected seawater samples from sea ice to deep waters at six vertical profiles near an active hydrothermal vent and its plume. In comparison to seawater, we found that the organic matter in waters directly affected by the hydrothermal plume had different chemical composition. We suggest that hydrothermal processes may influence the organic matter distribution in the deep ocean.
Tanya J. R. Lippmann, Michiel H. in 't Zandt, Nathalie N. L. Van der Putten, Freek S. Busschers, Marc P. Hijma, Pieter van der Velden, Tim de Groot, Zicarlo van Aalderen, Ove H. Meisel, Caroline P. Slomp, Helge Niemann, Mike S. M. Jetten, Han A. J. Dolman, and Cornelia U. Welte
Biogeosciences, 18, 5491–5511, https://doi.org/10.5194/bg-18-5491-2021, https://doi.org/10.5194/bg-18-5491-2021, 2021
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This paper is a step towards understanding the basal peat ecosystem beneath the North Sea. Plant remains followed parallel sequences. Methane concentrations were low with local exceptions, with the source likely being trapped pockets of millennia-old methane. Microbial community structure indicated the absence of a biofilter and was diverse across sites. Large carbon stores in the presence of methanogens and in the absence of methanotrophs have the potential to be metabolized into methane.
Josefa Verdugo, Ellen Damm, and Anna Nikolopoulos
The Cryosphere, 15, 2701–2717, https://doi.org/10.5194/tc-15-2701-2021, https://doi.org/10.5194/tc-15-2701-2021, 2021
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We show that the ice structures determine the fate of methane during the early melt season and that sea ice may act as a sink of methane when methane oxidation occurs in specific layers of thick and complex sea ice. In spring, when ice melt starts, sea ice methane released into the ocean is the favored pathway. We suggest that changes in ice cover are thus likely to change the methane pathways in the Arctic Ocean and sea ice as a potential source of methane supersaturation in surface waters.
Ines Spangenberg, Pier Paul Overduin, Ellen Damm, Ingeborg Bussmann, Hanno Meyer, Susanne Liebner, Michael Angelopoulos, Boris K. Biskaborn, Mikhail N. Grigoriev, and Guido Grosse
The Cryosphere, 15, 1607–1625, https://doi.org/10.5194/tc-15-1607-2021, https://doi.org/10.5194/tc-15-1607-2021, 2021
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Thermokarst lakes are common on ice-rich permafrost. Many studies have shown that they are sources of methane to the atmosphere. Although they are usually covered by ice, little is known about what happens to methane in winter. We studied how much methane is contained in the ice of a thermokarst lake, a thermokarst lagoon and offshore. Methane concentrations differed strongly, depending on water body type. Microbes can also oxidize methane in ice and lower the concentrations during winter.
Thomas Krumpen, Florent Birrien, Frank Kauker, Thomas Rackow, Luisa von Albedyll, Michael Angelopoulos, H. Jakob Belter, Vladimir Bessonov, Ellen Damm, Klaus Dethloff, Jari Haapala, Christian Haas, Carolynn Harris, Stefan Hendricks, Jens Hoelemann, Mario Hoppmann, Lars Kaleschke, Michael Karcher, Nikolai Kolabutin, Ruibo Lei, Josefine Lenz, Anne Morgenstern, Marcel Nicolaus, Uwe Nixdorf, Tomash Petrovsky, Benjamin Rabe, Lasse Rabenstein, Markus Rex, Robert Ricker, Jan Rohde, Egor Shimanchuk, Suman Singha, Vasily Smolyanitsky, Vladimir Sokolov, Tim Stanton, Anna Timofeeva, Michel Tsamados, and Daniel Watkins
The Cryosphere, 14, 2173–2187, https://doi.org/10.5194/tc-14-2173-2020, https://doi.org/10.5194/tc-14-2173-2020, 2020
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In October 2019 the research vessel Polarstern was moored to an ice floe in order to travel with it on the 1-year-long MOSAiC journey through the Arctic. Here we provide historical context of the floe's evolution and initial state for upcoming studies. We show that the ice encountered on site was exceptionally thin and was formed on the shallow Siberian shelf. The analyses presented provide the initial state for the analysis and interpretation of upcoming biogeochemical and ecological studies.
Astrid Lampert, Falk Pätzold, Magnus O. Asmussen, Lennart Lobitz, Thomas Krüger, Thomas Rausch, Torsten Sachs, Christian Wille, Denis Sotomayor Zakharov, Dominik Gaus, Stephan Bansmer, and Ellen Damm
Atmos. Meas. Tech., 13, 1937–1952, https://doi.org/10.5194/amt-13-1937-2020, https://doi.org/10.5194/amt-13-1937-2020, 2020
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Methane has high climate warming potential. Sources of methane can be distinguished by the isotopic composition. To investigate the origin of methane, an airborne sampling system has been developed that can take air samples worldwide and at various altitudes. The article shows the performance of the overall system, from taking samples to laboratory analyses. As known methane source, a rewetted peatland site, was studied, and the vertical distribution of the isotopic composition is investigated.
Haoyi Yao, Wei-Li Hong, Giuliana Panieri, Simone Sauer, Marta E. Torres, Moritz F. Lehmann, Friederike Gründger, and Helge Niemann
Biogeosciences, 16, 2221–2232, https://doi.org/10.5194/bg-16-2221-2019, https://doi.org/10.5194/bg-16-2221-2019, 2019
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How methane is transported in the sediment is important for the microbial community living on methane. Here we report an observation of a mini-fracture that facilitates the advective gas transport of methane in the sediment, compared to the diffusive fluid transport without a fracture. We found contrasting bio-geochemical signals in these different transport modes. This finding can help to fill the gap in the fracture network system in modulating methane dynamics in surface sediments.
Dong-Hun Lee, Jung-Hyun Kim, Yung Mi Lee, Alina Stadnitskaia, Young Keun Jin, Helge Niemann, Young-Gyun Kim, and Kyung-Hoon Shin
Biogeosciences, 15, 7419–7433, https://doi.org/10.5194/bg-15-7419-2018, https://doi.org/10.5194/bg-15-7419-2018, 2018
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In this study, we provide first evidence of lipid biomarker patterns and phylogenetic identities of key microbes mediating anaerobic oxidation of methane (AOM) communities in active mud volcanoes (MVs) on the continental slope of the Canadian Beaufort Sea. Our lipid and 16S rRNA results indicate that archaea of the ANME-2c and ANME-3 clades are involved in AOM in the MVs investigated.
Lea Steinle, Johanna Maltby, Tina Treude, Annette Kock, Hermann W. Bange, Nadine Engbersen, Jakob Zopfi, Moritz F. Lehmann, and Helge Niemann
Biogeosciences, 14, 1631–1645, https://doi.org/10.5194/bg-14-1631-2017, https://doi.org/10.5194/bg-14-1631-2017, 2017
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Large amounts of methane are produced in anoxic, coastal sediments, from which it can seep into the overlying water column. Aerobic oxidation of methane (MOx) mediated by methanotrophic bacteria is an important sink for methane before its evasion to the atmosphere. In a 2-year seasonal study, we investigated the spatio-temporal variability of MOx in a seasonally hypoxic coastal inlet using radiotracer-based methods. In experiments, we assessed the effect of variable oxygen concentrations on MOx.
S. Mau, T. Gentz, J.-H. Körber, M. E. Torres, M. Römer, H. Sahling, P. Wintersteller, R. Martinez, M. Schlüter, and E. Helmke
Biogeosciences, 12, 5261–5276, https://doi.org/10.5194/bg-12-5261-2015, https://doi.org/10.5194/bg-12-5261-2015, 2015
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Zhen Zhang, Benjamin Poulter, Joe R. Melton, William J. Riley, George H. Allen, David J. Beerling, Philippe Bousquet, Josep G. Canadell, Etienne Fluet-Chouinard, Philippe Ciais, Nicola Gedney, Peter O. Hopcroft, Akihiko Ito, Robert B. Jackson, Atul K. Jain, Katherine Jensen, Fortunat Joos, Thomas Kleinen, Sara H. Knox, Tingting Li, Xin Li, Xiangyu Liu, Kyle McDonald, Gavin McNicol, Paul A. Miller, Jurek Müller, Prabir K. Patra, Changhui Peng, Shushi Peng, Zhangcai Qin, Ryan M. Riggs, Marielle Saunois, Qing Sun, Hanqin Tian, Xiaoming Xu, Yuanzhi Yao, Yi Xi, Wenxin Zhang, Qing Zhu, Qiuan Zhu, and Qianlai Zhuang
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Biogeosciences, 22, 289–304, https://doi.org/10.5194/bg-22-289-2025, https://doi.org/10.5194/bg-22-289-2025, 2025
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Biogeosciences, 21, 5613–5637, https://doi.org/10.5194/bg-21-5613-2024, https://doi.org/10.5194/bg-21-5613-2024, 2024
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Wael Al Hamwi, Maren Dubbert, Jörg Schaller, Matthias Lück, Marten Schmidt, and Mathias Hoffmann
Biogeosciences, 21, 5639–5651, https://doi.org/10.5194/bg-21-5639-2024, https://doi.org/10.5194/bg-21-5639-2024, 2024
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We present a fully automatic, low-cost soil–plant enclosure system to monitor CO2 and evapotranspiration fluxes within greenhouse experiments. It operates in two modes: independent, using low-cost sensors, and dependent, where multiple chambers connect to a single gas analyzer via a low-cost multiplexer. This system provides precise, accurate measurements and high temporal resolution, enabling comprehensive monitoring of plant–soil responses to various treatments and conditions.
Zhao-Jun Yong, Wei-Jen Lin, Chiao-Wen Lin, and Hsing-Juh Lin
Biogeosciences, 21, 5247–5260, https://doi.org/10.5194/bg-21-5247-2024, https://doi.org/10.5194/bg-21-5247-2024, 2024
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We measured CO2 and CH4 fluxes from mangrove stems and soils of Avicennia marina and Kandelia obovata during tidal cycles. Both stem types served as CO2 and CH4 sources, emitting less CH4 than soils, with no difference in CO2 flux. While A. marina stems showed increased CO2 fluxes from low to high tides, they acted as a CH4 sink before flooding and as a source after ebbing. However, K. obovata stems showed no flux pattern. This study highlights the need to consider tidal influence and species.
Ihab Alfadhel, Ignacio Peralta-Maraver, Isabel Reche, Enrique P. Sánchez-Cañete, Sergio Aranda-Barranco, Eva Rodríguez-Velasco, Andrew S. Kowalski, and Penélope Serrano-Ortiz
Biogeosciences, 21, 5117–5129, https://doi.org/10.5194/bg-21-5117-2024, https://doi.org/10.5194/bg-21-5117-2024, 2024
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Inland saline lakes are crucial in the global carbon cycle, but increased droughts may alter their carbon exchange capacity. We measured CO2 and CH4 fluxes in a Mediterranean saline lake using the eddy covariance method under dry and wet conditions. We found the lake acts as a carbon sink during wet periods but not during droughts. These results highlight the importance of saline lakes in carbon sequestration and their vulnerability to climate-change-induced droughts.
Nathaniel B. Weston, Cynthia Troy, Patrick J. Kearns, Jennifer L. Bowen, William Porubsky, Christelle Hyacinthe, Christof Meile, Philippe Van Cappellen, and Samantha B. Joye
Biogeosciences, 21, 4837–4851, https://doi.org/10.5194/bg-21-4837-2024, https://doi.org/10.5194/bg-21-4837-2024, 2024
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Nitrous oxide (N2O) is a potent greenhouse and ozone-depleting gas produced largely from microbial nitrogen cycling processes, and human activities have resulted in increases in atmospheric N2O. We investigate the role of physical and chemical disturbances to soils and sediments in N2O production. We demonstrate that physicochemical perturbation increases N2O production, microbial community adapts over time, and initial perturbation appears to confer resilience to subsequent disturbance.
Sigrid Trier Kjær, Sebastian Westermann, Nora Nedkvitne, and Peter Dörsch
Biogeosciences, 21, 4723–4737, https://doi.org/10.5194/bg-21-4723-2024, https://doi.org/10.5194/bg-21-4723-2024, 2024
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Permafrost peatlands are thawing due to climate change, releasing large quantities of carbon that degrades upon thawing and is released as CO2, CH4 or dissolved organic carbon (DOC). We incubated thawed Norwegian permafrost peat plateaus and thermokarst pond sediment found next to permafrost for up to 350 d to measure carbon loss. CO2 production was initially the highest, whereas CH4 production increased over time. The largest carbon loss was measured at the top of the peat plateau core as DOC.
Silvie Lainela, Erik Jacobs, Stella-Theresa Luik, Gregor Rehder, and Urmas Lips
Biogeosciences, 21, 4495–4519, https://doi.org/10.5194/bg-21-4495-2024, https://doi.org/10.5194/bg-21-4495-2024, 2024
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We evaluate the variability of carbon dioxide and methane in the surface layer of the north-eastern basins of the Baltic Sea in 2018. We show that the shallower coastal areas have considerably higher spatial variability and seasonal amplitude of surface layer pCO2 and cCH4 than measured in the offshore areas of the Baltic Sea. Despite this high variability, caused mostly by coastal physical processes, the average annual air–sea CO2 fluxes differed only marginally between the sub-basins.
Martti Honkanen, Mika Aurela, Juha Hatakka, Lumi Haraguchi, Sami Kielosto, Timo Mäkelä, Jukka Seppälä, Simo-Matti Siiriä, Ken Stenbäck, Juha-Pekka Tuovinen, Pasi Ylöstalo, and Lauri Laakso
Biogeosciences, 21, 4341–4359, https://doi.org/10.5194/bg-21-4341-2024, https://doi.org/10.5194/bg-21-4341-2024, 2024
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The exchange of CO2 between the sea and the atmosphere was studied in the Archipelago Sea, Baltic Sea, in 2017–2021, using an eddy covariance technique. The sea acted as a net source of CO2 with an average yearly emission of 27.1 gC m-2 yr-1, indicating that the marine ecosystem respired carbon that originated elsewhere. The yearly CO2 emission varied between 18.2–39.2 gC m-2 yr-1, mostly due to the yearly variation of ecosystem carbon uptake.
Ralf C. H. Aben, Daniël van de Craats, Jim Boonman, Stijn H. Peeters, Bart Vriend, Coline C. F. Boonman, Ype van der Velde, Gilles Erkens, and Merit van den Berg
Biogeosciences, 21, 4099–4118, https://doi.org/10.5194/bg-21-4099-2024, https://doi.org/10.5194/bg-21-4099-2024, 2024
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Drained peatlands cause high CO2 emissions. We assessed the effectiveness of subsurface water infiltration systems (WISs) in reducing CO2 emissions related to increases in water table depth (WTD) on 12 sites for up to 4 years. Results show WISs markedly reduced emissions by 2.1 t CO2-C ha-1 yr-1. The relationship between the amount of carbon above the WTD and CO2 emission was stronger than the relationship between WTD and emission. Long-term monitoring is crucial for accurate emission estimates.
Ingeborg Bussmann, Eric P. Achterberg, Holger Brix, Nicolas Brüggemann, Götz Flöser, Claudia Schütze, and Philipp Fischer
Biogeosciences, 21, 3819–3838, https://doi.org/10.5194/bg-21-3819-2024, https://doi.org/10.5194/bg-21-3819-2024, 2024
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Methane (CH4) is an important greenhouse gas and contributes to climate warming. However, the input of CH4 from coastal areas to the atmosphere is not well defined. Dissolved and atmospheric CH4 was determined at high spatial resolution in or above the North Sea. The atmospheric CH4 concentration was mainly influenced by wind direction. With our detailed study on the spatial distribution of CH4 fluxes we were able to provide a detailed and more realistic estimation of coastal CH4 fluxes.
Patrick Aurich, Uwe Spank, and Matthias Koschorreck
EGUsphere, https://doi.org/10.5194/egusphere-2024-2550, https://doi.org/10.5194/egusphere-2024-2550, 2024
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Lakes can be sources and sinks for the greenhouse gas carbon dioxide. The gas exchange between the atmosphere and the water can be measured by taking gas samples in both. However, the depth of water samples is not well defined, which may cause errors. We hypothesized that gradients of CO2 concentrations develop under the surface when wind speeds are very low. Our measurements show that such a gradient can occur in calm nights, potentially shifting a lake from a CO2 sink to a source.
Olli-Pekka Tikkasalo, Olli Peltola, Pavel Alekseychik, Juha Heikkinen, Samuli Launiainen, Aleksi Lehtonen, Qian Li, Eduardo Martinez-García, Mikko Peltoniemi, Petri Salovaara, Ville Tuominen, and Raisa Mäkipää
EGUsphere, https://doi.org/10.5194/egusphere-2024-1994, https://doi.org/10.5194/egusphere-2024-1994, 2024
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The emissions of greenhouse gases (GHG) carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O) were measured from a clearcut peatland forest site. The measurements covered the whole year of 2022 which was the second growing season after the clearcut. The site was a strong GHG source and the highest emissions came from CO2 followed by N2O and CH4. A statistical model that included information on different surfaces in the site was developed to unravel surface-type specific GHG fluxes.
Roxanne Daelman, Marijn Bauters, Matti Barthel, Emmanuel Bulonza, Lodewijk Lefevre, José Mbifo, Johan Six, Klaus Butterbach-Bahl, Benjamin Wolf, Ralf Kiese, and Pascal Boeckx
EGUsphere, https://doi.org/10.5194/egusphere-2024-2346, https://doi.org/10.5194/egusphere-2024-2346, 2024
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The increase in atmospheric concentrations of several greenhouse gasses (GHG) since 1750 is attributed to human activity, however natural ecosystems, such as tropical forests, also contribute to GHG budgets. The Congo basin hosts the second largest tropical forest and is understudied. In this study, measurements of soil GHG exchange were carried out during 16 months in a tropical forest in the Congo Basin. Overall, the soil acted as a major source for CO2 and N2O and a minor sink for CH4.
Ruth Reef, Edoardo Daly, Tivanka Anandappa, Eboni-Jane Vienna-Hallam, Harriet Robertson, Matthew Peck, and Adrien Guyot
EGUsphere, https://doi.org/10.5194/egusphere-2024-2182, https://doi.org/10.5194/egusphere-2024-2182, 2024
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Studies show that saltmarshes excel at capturing carbon from the atmosphere. In this study, we measured CO2 flux in an Australian temperate saltmarsh on French Island. The temperate saltmarsh exhibited strong seasonality. During the warmer growing season, the saltmarsh absorbed on average 10.5 grams of CO2 from the atmosphere per m2 daily. Even in winter, when plants were dormant, it continued to be a CO2 sink, albeit smaller. Cool temperatures and high cloud cover inhibit carbon sequestration.
Niu Zhu, Jinniu Wang, Dongliang Luo, Xufeng Wang, Cheng Shen, and Ning Wu
Biogeosciences, 21, 3509–3522, https://doi.org/10.5194/bg-21-3509-2024, https://doi.org/10.5194/bg-21-3509-2024, 2024
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Our study delves into the vital role of subalpine forests in the Qinghai–Tibet Plateau as carbon sinks in the context of climate change. Utilizing advanced eddy covariance systems, we uncover their significant carbon sequestration potential, observing distinct seasonal patterns influenced by temperature, humidity, and radiation. Notably, these forests exhibit robust carbon absorption, with potential implications for global carbon balance.
Colette L. Kelly, Nicole M. Travis, Pascale Anabelle Baya, Claudia Frey, Xin Sun, Bess B. Ward, and Karen L. Casciotti
Biogeosciences, 21, 3215–3238, https://doi.org/10.5194/bg-21-3215-2024, https://doi.org/10.5194/bg-21-3215-2024, 2024
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Nitrous oxide, a potent greenhouse gas, accumulates in regions of the ocean that are low in dissolved oxygen. We used a novel combination of chemical tracers to determine how nitrous oxide is produced in one of these regions, the eastern tropical North Pacific Ocean. Our experiments showed that the two most important sources of nitrous oxide under low-oxygen conditions are denitrification, an anaerobic process, and a novel “hybrid” process performed by ammonia-oxidizing archaea.
Hella van Asperen, Thorsten Warneke, Alessandro Carioca de Araújo, Bruce Forsberg, Sávio José Filgueiras Ferreira, Thomas Röckmann, Carina van der Veen, Sipko Bulthuis, Leonardo Ramos de Oliveira, Thiago de Lima Xavier, Jailson da Mata, Marta de Oliveira Sá, Paulo Ricardo Teixeira, Julie Andrews de França e Silva, Susan Trumbore, and Justus Notholt
Biogeosciences, 21, 3183–3199, https://doi.org/10.5194/bg-21-3183-2024, https://doi.org/10.5194/bg-21-3183-2024, 2024
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Carbon monoxide (CO) is regarded as an important indirect greenhouse gas. Soils can emit and take up CO, but, until now, uncertainty remains as to which process dominates in tropical rainforests. We present the first soil CO flux measurements from a tropical rainforest. Based on our observations, we report that tropical rainforest soils are a net source of CO. In addition, we show that valley streams and inundated areas are likely additional hot spots of CO in the ecosystem.
Sebastian F. A. Jordan, Stefan Schloemer, Martin Krüger, Tanja Heffner, Marcus A. Horn, and Martin Blumenberg
EGUsphere, https://doi.org/10.5194/egusphere-2024-1461, https://doi.org/10.5194/egusphere-2024-1461, 2024
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In a multilayered approach, we studied eight cut and buried abandoned oil wells in a peat rich area of Northern Germany for methane flux, soil gas composition, and isotopic signatures of soil methane and carbon dioxide. The detected methane emissions were of biogenic, peat origin and were not associated with the abandoned wells. Additional microbial analysis and methane oxidation rate measurements demonstrated a high methane-emission mitigation potential in the studied peat-soils.
Laura Thölix, Leif Backman, Minttu Havu, Esko Karvinen, Jesse Soininen, Justine Trémeau, Olli Nevalainen, Joyson Ahongshangbam, Leena Järvi, and Liisa Kulmala
EGUsphere, https://doi.org/10.5194/egusphere-2024-1453, https://doi.org/10.5194/egusphere-2024-1453, 2024
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Cities seek carbon neutrality and are interested in the sinks of urban vegetation. Measurements are difficult to do which leads to the need for modeling carbon cycle. In this study, we examined the performance of models in estimating carbon sequestration rates in lawns, park trees, and urban forests in Helsinki, Finland. We found that models simulated seasonal and annual variations well. Trees had larger carbon sequestration rates compared with lawns and irrigation often increased carbon sink.
Yélognissè Agbohessou, Claire Delon, Manuela Grippa, Eric Mougin, Daouda Ngom, Espoir Koudjo Gaglo, Ousmane Ndiaye, Paulo Salgado, and Olivier Roupsard
Biogeosciences, 21, 2811–2837, https://doi.org/10.5194/bg-21-2811-2024, https://doi.org/10.5194/bg-21-2811-2024, 2024
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Emissions of greenhouse gases in the Sahel are not well represented because they are considered weak compared to the rest of the world. However, natural areas in the Sahel emit carbon dioxide and nitrous oxides, which need to be assessed because of extended surfaces. We propose an assessment of such emissions in Sahelian silvopastoral systems and of how they are influenced by environmental characteristics. These results are essential to inform climate change strategies in the region.
Merit van den Berg, Thomas M. Gremmen, Renske J. E. Vroom, Jacobus van Huissteden, Jim Boonman, Corine J. A. van Huissteden, Ype van der Velde, Alfons J. P. Smolders, and Bas P. van de Riet
Biogeosciences, 21, 2669–2690, https://doi.org/10.5194/bg-21-2669-2024, https://doi.org/10.5194/bg-21-2669-2024, 2024
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Drained peatlands emit 3 % of the global greenhouse gas emissions. Paludiculture is a way to reduce CO2 emissions while at the same time generating an income for landowners. The side effect is the potentially high methane emissions. We found very high methane emissions for broadleaf cattail compared with narrowleaf cattail and water fern. The rewetting was, however, effective to stop CO2 emissions for all species. The highest potential to reduce greenhouse gas emissions had narrowleaf cattail.
Thea H. Heimdal, Galen A. McKinley, Adrienne J. Sutton, Amanda R. Fay, and Lucas Gloege
Biogeosciences, 21, 2159–2176, https://doi.org/10.5194/bg-21-2159-2024, https://doi.org/10.5194/bg-21-2159-2024, 2024
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Measurements of ocean carbon are limited in time and space. Machine learning algorithms are therefore used to reconstruct ocean carbon where observations do not exist. Improving these reconstructions is important in order to accurately estimate how much carbon the ocean absorbs from the atmosphere. In this study, we find that a small addition of observations from the Southern Ocean, obtained by autonomous sampling platforms, could significantly improve the reconstructions.
Gabrielle Emma Kleber, Leonard Magerl, Alexandra V. Turchyn, Mark Trimmer, Yizhu Zhu, and Andrew Hodson
EGUsphere, https://doi.org/10.5194/egusphere-2024-1273, https://doi.org/10.5194/egusphere-2024-1273, 2024
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Our research on Svalbard has uncovered that melting glaciers can release large amounts of methane, a potent greenhouse gas. By studying a glacier over two summers, we found that its river was highly concentrated in methane. This suggests that as the Arctic warms and glaciers melt, they could be a significant source of methane emissions. This is the first time such emissions have been measured on Svalbard, indicating a wider environmental concern as similar processes may occur across the Arctic.
Guilherme L. Torres Mendonça, Julia Pongratz, and Christian H. Reick
Biogeosciences, 21, 1923–1960, https://doi.org/10.5194/bg-21-1923-2024, https://doi.org/10.5194/bg-21-1923-2024, 2024
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We study the timescale dependence of airborne fraction and underlying feedbacks by a theory of the climate–carbon system. Using simulations we show the predictive power of this theory and find that (1) this fraction generally decreases for increasing timescales and (2) at all timescales the total feedback is negative and the model spread in a single feedback causes the spread in the airborne fraction. Our study indicates that those are properties of the system, independently of the scenario.
François Clayer, Jan Erik Thrane, Kuria Ndungu, Andrew King, Peter Dörsch, and Thomas Rohrlack
Biogeosciences, 21, 1903–1921, https://doi.org/10.5194/bg-21-1903-2024, https://doi.org/10.5194/bg-21-1903-2024, 2024
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Determination of dissolved greenhouse gas (GHG) in freshwater allows us to estimate GHG fluxes. Mercuric chloride (HgCl2) is used to preserve water samples prior to GHG analysis despite its environmental and health impacts and interferences with water chemistry in freshwater. Here, we tested the effects of HgCl2, two substitutes and storage time on GHG in water from two boreal lakes. Preservation with HgCl2 caused overestimation of CO2 concentration with consequences for GHG flux estimation.
Helena Rautakoski, Mika Korkiakoski, Jarmo Mäkelä, Markku Koskinen, Kari Minkkinen, Mika Aurela, Paavo Ojanen, and Annalea Lohila
Biogeosciences, 21, 1867–1886, https://doi.org/10.5194/bg-21-1867-2024, https://doi.org/10.5194/bg-21-1867-2024, 2024
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Current and future nitrous oxide (N2O) emissions are difficult to estimate due to their high variability in space and time. Several years of N2O fluxes from drained boreal peatland forest indicate high importance of summer precipitation, winter temperature, and snow conditions in controlling annual N2O emissions. The results indicate increasing year-to-year variation in N2O emissions in changing climate with more extreme seasonal weather conditions.
Matthias Koschorreck, Norbert Kamjunke, Uta Koedel, Michael Rode, Claudia Schuetze, and Ingeborg Bussmann
Biogeosciences, 21, 1613–1628, https://doi.org/10.5194/bg-21-1613-2024, https://doi.org/10.5194/bg-21-1613-2024, 2024
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We measured the emission of carbon dioxide (CO2) and methane (CH4) from different sites at the river Elbe in Germany over 3 days to find out what is more important for quantification: small-scale spatial variability or diurnal temporal variability. We found that CO2 emissions were very different between day and night, while CH4 emissions were more different between sites. Dried out river sediments contributed to CO2 emissions, while the side areas of the river were important CH4 sources.
Odysseas Sifounakis, Edwin Haas, Klaus Butterbach-Bahl, and Maria P. Papadopoulou
Biogeosciences, 21, 1563–1581, https://doi.org/10.5194/bg-21-1563-2024, https://doi.org/10.5194/bg-21-1563-2024, 2024
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We performed a full assessment of the carbon and nitrogen cycles of a cropland ecosystem. An uncertainty analysis and quantification of all carbon and nitrogen fluxes were deployed. The inventory simulations include greenhouse gas emissions of N2O, NH3 volatilization and NO3 leaching from arable land cultivation in Greece. The inventory also reports changes in soil organic carbon and nitrogen stocks in arable soils.
Sarah M. Ludwig, Luke Schiferl, Jacqueline Hung, Susan M. Natali, and Roisin Commane
Biogeosciences, 21, 1301–1321, https://doi.org/10.5194/bg-21-1301-2024, https://doi.org/10.5194/bg-21-1301-2024, 2024
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Landscapes are often assumed to be homogeneous when using eddy covariance fluxes, which can lead to biases when calculating carbon budgets. In this study we report eddy covariance carbon fluxes from heterogeneous tundra. We used the footprints of each flux observation to unmix the fluxes coming from components of the landscape. We identified and quantified hot spots of carbon emissions in the landscape. Accurately scaling with landscape heterogeneity yielded half as much regional carbon uptake.
Justine Trémeau, Beñat Olascoaga, Leif Backman, Esko Karvinen, Henriikka Vekuri, and Liisa Kulmala
Biogeosciences, 21, 949–972, https://doi.org/10.5194/bg-21-949-2024, https://doi.org/10.5194/bg-21-949-2024, 2024
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We studied urban lawns and meadows in the Helsinki metropolitan area, Finland. We found that meadows are more resistant to drought events but that they do not increase carbon sequestration compared with lawns. Moreover, the transformation from lawns to meadows did not demonstrate any negative climate effects in terms of greenhouse gas emissions. Even though social and economic aspects also steer urban development, these results can guide planning to consider carbon-smart options.
Guantao Chen, Edzo Veldkamp, Muhammad Damris, Bambang Irawan, Aiyen Tjoa, and Marife D. Corre
Biogeosciences, 21, 513–529, https://doi.org/10.5194/bg-21-513-2024, https://doi.org/10.5194/bg-21-513-2024, 2024
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We established an oil palm management experiment in a large-scale oil palm plantation in Jambi, Indonesia. We recorded oil palm fruit yield and measured soil CO2, N2O, and CH4 fluxes. After 4 years of treatment, compared with conventional fertilization with herbicide weeding, reduced fertilization with mechanical weeding did not reduce yield and soil greenhouse gas emissions, which highlights the legacy effects of over a decade of conventional management prior to the start of the experiment.
Elizabeth Gachibu Wangari, Ricky Mwangada Mwanake, Tobias Houska, David Kraus, Gretchen Maria Gettel, Ralf Kiese, Lutz Breuer, and Klaus Butterbach-Bahl
Biogeosciences, 20, 5029–5067, https://doi.org/10.5194/bg-20-5029-2023, https://doi.org/10.5194/bg-20-5029-2023, 2023
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Agricultural landscapes act as sinks or sources of the greenhouse gases (GHGs) CO2, CH4, or N2O. Various physicochemical and biological processes control the fluxes of these GHGs between ecosystems and the atmosphere. Therefore, fluxes depend on environmental conditions such as soil moisture, soil temperature, or soil parameters, which result in large spatial and temporal variations of GHG fluxes. Here, we describe an example of how this variation may be studied and analyzed.
Laurie C. Menviel, Paul Spence, Andrew E. Kiss, Matthew A. Chamberlain, Hakase Hayashida, Matthew H. England, and Darryn Waugh
Biogeosciences, 20, 4413–4431, https://doi.org/10.5194/bg-20-4413-2023, https://doi.org/10.5194/bg-20-4413-2023, 2023
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As the ocean absorbs 25% of the anthropogenic emissions of carbon, it is important to understand the impact of climate change on the flux of carbon between the ocean and the atmosphere. Here, we use a very high-resolution ocean, sea-ice, carbon cycle model to show that the capability of the Southern Ocean to uptake CO2 has decreased over the last 40 years due to a strengthening and poleward shift of the southern hemispheric westerlies. This trend is expected to continue over the coming century.
Petr Znachor, Jiří Nedoma, Vojtech Kolar, and Anna Matoušů
Biogeosciences, 20, 4273–4288, https://doi.org/10.5194/bg-20-4273-2023, https://doi.org/10.5194/bg-20-4273-2023, 2023
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We conducted intensive spatial sampling of the hypertrophic fishpond to better understand the spatial dynamics of methane fluxes and environmental heterogeneity in fishponds. The diffusive fluxes of methane accounted for only a minor fraction of the total fluxes and both varied pronouncedly within the pond and over the studied summer season. This could be explained only by the water depth. Wind substantially affected temperature, oxygen and chlorophyll a distribution in the pond.
Sofie Sjögersten, Martha Ledger, Matthias Siewert, Betsabé de la Barreda-Bautista, Andrew Sowter, David Gee, Giles Foody, and Doreen S. Boyd
Biogeosciences, 20, 4221–4239, https://doi.org/10.5194/bg-20-4221-2023, https://doi.org/10.5194/bg-20-4221-2023, 2023
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Permafrost thaw in Arctic regions is increasing methane emissions, but quantification is difficult given the large and remote areas impacted. We show that UAV data together with satellite data can be used to extrapolate emissions across the wider landscape as well as detect areas at risk of higher emissions. A transition of currently degrading areas to fen type vegetation can increase emission by several orders of magnitude, highlighting the importance of quantifying areas at risk.
Cole G. Brachmann, Tage Vowles, Riikka Rinnan, Mats P. Björkman, Anna Ekberg, and Robert G. Björk
Biogeosciences, 20, 4069–4086, https://doi.org/10.5194/bg-20-4069-2023, https://doi.org/10.5194/bg-20-4069-2023, 2023
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Herbivores change plant communities through grazing, altering the amount of CO2 and plant-specific chemicals (termed VOCs) emitted. We tested this effect by excluding herbivores and studying the CO2 and VOC emissions. Herbivores reduced CO2 emissions from a meadow community and altered VOC composition; however, community type had the strongest effect on the amount of CO2 and VOCs released. Herbivores can mediate greenhouse gas emissions, but the effect is marginal and community dependent.
Ole Lessmann, Jorge Encinas Fernández, Karla Martínez-Cruz, and Frank Peeters
Biogeosciences, 20, 4057–4068, https://doi.org/10.5194/bg-20-4057-2023, https://doi.org/10.5194/bg-20-4057-2023, 2023
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Based on a large dataset of seasonally resolved methane (CH4) pore water concentrations in a reservoir's sediment, we assess the significance of CH4 emissions due to reservoir flushing. In the studied reservoir, CH4 emissions caused by one flushing operation can represent 7 %–14 % of the annual CH4 emissions and depend on the timing of the flushing operation. In reservoirs with high sediment loadings, regular flushing may substantially contribute to the overall CH4 emissions.
Matti Räsänen, Risto Vesala, Petri Rönnholm, Laura Arppe, Petra Manninen, Markus Jylhä, Jouko Rikkinen, Petri Pellikka, and Janne Rinne
Biogeosciences, 20, 4029–4042, https://doi.org/10.5194/bg-20-4029-2023, https://doi.org/10.5194/bg-20-4029-2023, 2023
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Fungus-growing termites recycle large parts of dead plant material in African savannas and are significant sources of greenhouse gases. We measured CO2 and CH4 fluxes from their mounds and surrounding soils in open and closed habitats. The fluxes scale with mound volume. The results show that emissions from mounds of fungus-growing termites are more stable than those from other termites. The soil fluxes around the mound are affected by the termite colonies at up to 2 m distance from the mound.
Tim René de Groot, Anne Margriet Mol, Katherine Mesdag, Pierre Ramond, Rachel Ndhlovu, Julia Catherine Engelmann, Thomas Röckmann, and Helge Niemann
Biogeosciences, 20, 3857–3872, https://doi.org/10.5194/bg-20-3857-2023, https://doi.org/10.5194/bg-20-3857-2023, 2023
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This study investigates methane dynamics in the Wadden Sea. Our measurements revealed distinct variations triggered by seasonality and tidal forcing. The methane budget was higher in warmer seasons but surprisingly high in colder seasons. Methane dynamics were amplified during low tides, flushing the majority of methane into the North Sea or releasing it to the atmosphere. Methanotrophic activity was also elevated during low tide but mitigated only a small fraction of the methane efflux.
Frederic Thalasso, Brenda Riquelme, Andrés Gómez, Roy Mackenzie, Francisco Javier Aguirre, Jorge Hoyos-Santillan, Ricardo Rozzi, and Armando Sepulveda-Jauregui
Biogeosciences, 20, 3737–3749, https://doi.org/10.5194/bg-20-3737-2023, https://doi.org/10.5194/bg-20-3737-2023, 2023
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A robust skirt-chamber design to capture and quantify greenhouse gas emissions from peatlands is presented. Compared to standard methods, this design improves the spatial resolution of field studies in remote locations while minimizing intrusion.
Gesa Schulz, Tina Sanders, Yoana G. Voynova, Hermann W. Bange, and Kirstin Dähnke
Biogeosciences, 20, 3229–3247, https://doi.org/10.5194/bg-20-3229-2023, https://doi.org/10.5194/bg-20-3229-2023, 2023
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Nitrous oxide (N2O) is an important greenhouse gas. However, N2O emissions from estuaries underlie significant uncertainties due to limited data availability and high spatiotemporal variability. We found the Elbe Estuary (Germany) to be a year-round source of N2O, with the highest emissions in winter along with high nitrogen loads. However, in spring and summer, N2O emissions did not decrease alongside lower nitrogen loads because organic matter fueled in situ N2O production along the estuary.
Alex Mavrovic, Oliver Sonnentag, Juha Lemmetyinen, Jennifer L. Baltzer, Christophe Kinnard, and Alexandre Roy
Biogeosciences, 20, 2941–2970, https://doi.org/10.5194/bg-20-2941-2023, https://doi.org/10.5194/bg-20-2941-2023, 2023
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This review supports the integration of microwave spaceborne information into carbon cycle science for Arctic–boreal regions. The microwave data record spans multiple decades with frequent global observations of soil moisture and temperature, surface freeze–thaw cycles, vegetation water storage, snowpack properties, and land cover. This record holds substantial unexploited potential to better understand carbon cycle processes.
Zoé Rehder, Thomas Kleinen, Lars Kutzbach, Victor Stepanenko, Moritz Langer, and Victor Brovkin
Biogeosciences, 20, 2837–2855, https://doi.org/10.5194/bg-20-2837-2023, https://doi.org/10.5194/bg-20-2837-2023, 2023
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We use a new model to investigate how methane emissions from Arctic ponds change with warming. We find that emissions increase substantially. Under annual temperatures 5 °C above present temperatures, pond methane emissions are more than 3 times higher than now. Most of this increase is caused by an increase in plant productivity as plants provide the substrate microbes used to produce methane. We conclude that vegetation changes need to be included in predictions of pond methane emissions.
Julian Koch, Lars Elsgaard, Mogens H. Greve, Steen Gyldenkærne, Cecilie Hermansen, Gregor Levin, Shubiao Wu, and Simon Stisen
Biogeosciences, 20, 2387–2403, https://doi.org/10.5194/bg-20-2387-2023, https://doi.org/10.5194/bg-20-2387-2023, 2023
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Utilizing peatlands for agriculture leads to large emissions of greenhouse gases worldwide. The emissions are triggered by lowering the water table, which is a necessary step in order to make peatlands arable. Many countries aim at reducing their emissions by restoring peatlands, which can be achieved by stopping agricultural activities and thereby raising the water table. We estimate a total emission of 2.6 Mt CO2-eq for organic-rich peatlands in Denmark and a potential reduction of 77 %.
Cited articles
Anderson, L. G., Jones, E. P., Lindegren, R., Rudels, B., and Sehlstedt, P.-l.: Nutrient regeneration in cold, high salinity bottom water of the Arctic shelves, Cont. Shelf Res., 8, 1345–1355, 1988.
Baani, M. and Liesack, W.: Two isozymes of particulate methane monooxygenase with different methane kinetics are found in Methylocystis sp. strain SC2, P. Natl. Acad. Sci., 105, 10203–10208, 2008.
Barnes, R. O. and Goldberg, E. D.: Methane production and consumption in anoxic marine sediments, Geology, 4, 297–300, 1976.
Bender, M. and Conrad, R.: Kinetics of methane oxidation in oxic soils, Chemosphere, 26, 687–769, 1993.
Bourne, D. G., McDonald, I. R., and Murell, J. C: Comparison of pmoA PCR primer sets as tools for investigating methanotroph diversity in three Danish soils, Appl. Environ. Microbiol., 67, 3802–3809, 2001.
Bowman, J. P., McCammon, S. A., and Skerratt, J. H.: Methylosphaera hansonii gen. nov, sp. nov, a psychrophilic, group I methanotroph from Antarctic marine-salinity, meromictic lakes, Microbiology, 143, 1451–1459, 1997.
Button, D. K: Kinetics of nutrient-limited transport and microbial growth, Microbiol. Rev, 49, 270–297, 1985.
Button, D. K.: Mud volcanoes, in: Handbook of Hydrocarbon and Lipid Microbiology, edited by: Timmis, K. N., Springer, NY, 1638–1647, 2010.
Damm, E., Schauer, U., Rudels, B., and Haas, C.: Excess of bottom-released methane in an Arctic shelf sea polynya in winter, Cont. Shelf Res., 27, 1692–1701, 2007.
Damm, E., Kiene, R. R, Schwarz, J., Falck, E., and Dieckmann, G.: Methane cycling in Arctic shelf water and its relationship with phytoplankton biomass and DMSP, Mar. Chem., 109, 45–59, 2008.
Damm, E., Helmke, E., Thoms, S., Schauer, U., Nöthig, E., Bakker, K., and Kiene, R. P.: Methane production in aerobic oligotrophic surface water in the central Arctic Ocean, Biogeosciences, 7, 1099–1108, https://doi.org/10.5194/bg-7-1099-2010, 2010.
de Angelis, M. A., Baross, J. A., and Lilley, M. D.: Enhanced microbial methane oxidation in water from a deep-sea hydrothermal vent field at simulated in situ hydrostatic pressures, Limnol. Oceanogr., 36, 565–570, 1991.
de Angelis, M. A., Lilley, M. D, Olson, E. J., and Baross, J. A.: Methane oxidation in deep-sea hydrothermal plumes of the Endeavour Segment of the Juan de Fuca Ridge, Deep-Sea Res. I, 40, 1169–1186, 1993.
Fer, I.: Scaling turbulent dissipation in an Arctic fjord, Deep-Sea Res. II, 53, 77–95, 2006.
Formolo, M.: The microbial production of methane and other volatile hydrocarbons, in: Handbook of Hydrocarbon and Lipid Microbiology, edited by: Timmis, K. N., Springer, NY, 113–126, 2010.
Gerdes, B., Brinkmeyer, R., Dieckmann, G., and Helmke, E.: Influence of crude oil on changes of bacterial communities in Arctic sea-ice, FEMS Microbiol. Ecol., 53, 129–139, 2005.
Geyer, F., Fer, I., and Eldevik, T: Dense overflow from an Arctic fjord: Mean seasonal cycle, variability and wind influence, Cont. Shelf Res., 29, 2110–2121, 2009.
Griffiths, R. P., Caldwell, B. A., Cline, J. D, Broich, W. A., and Morita, R. Y: Field observations of methane concentrations and oxidation rates in the southeastern Bering Sea, Appl. Environ. Microbiol., 44, 435–446, 1982.
Haarpaintner, J., Gascard, J. C, and Haugan, P. M.: Ice production and brine formation in Storfjorden, Svalbard, J. Geophys. Res., 106, 14001–14013, 2001.
Hanson, R. S. and Hanson, T E.: Methanotrophic bacteria, Microbiol. Rev., 60, 439–471, 1996.
Hastings, D. and Emerson, S.: Sulfate reduction in the presence of low oxygen levels in the water column of the Cariaco Trench, Limnol. Oceanogr., 33, 391–396, 1988.
He, R., Wooller, M. J., Pohlman, J. W., Quensen, J., Tiedje, J. M., and Leigh, M. B.: Shifts in identity and activity of methanotrophs in Arctic lake sediments in response to temperature changes, Appl. Environ. Microb., 78, 4715–4728, 2012.
Henckel, T., Jäckel, U., Schnell, S., and Conrad, R.: Molecular analyses of novel methanotrophic communities in forest soil that oxidize atmospheric methane, Appl. Environ. Microbiol., 66, 1801–1808, 2000.
Heintz, M., Mau, S., and Valentine, D. L: Physical control on methanotrophic potential in waters of the Santa Monica Basin, Southern California, Limnol. Oceanogr., 57, 420–432, 2012.
Hinrichs, K. U. and Boetius, A.: The anaerobic oxidation of methane: new insights in microbial ecology and biogeochemistry, in: Ocean Margin Systems, edited by: Wefer, G., Billett, D., Hebbeln, D., Jorgensen, B. B., Schluter, M., and van Weering, T., Springer Verlag, Heidelberg, 457–477, 2002.
Holmes, A. J., Costello, A., Lidstrom, M. E., and Murell, J. C: Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionary related, FEMS Microbiol. Lett., 132, 203–208, 1995.
IPCC: Climate Change 2007 – The Physical Science Basis – Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change, edited by: Solomon, S., Qin, D., Manning, M., Marquis, M., Averyt, K., Tignor, M. M. B., and LeRoy Miller, H. J., Cambridge University Press, Cambridge, 2007.
Jardon, F. P., Bouruet-Aubertot, P., Cuypers, Y., Vivier, F., and Lourenco, A.: Internal waves and vertical mixing in the Storfjorden Polynya, Svalbard, J. Geophys. Res.-Oceans, 116, C12040, https://doi.org/10.1029/2010JC006918, 2011.
Johnson, K. A. and Goody, R. S.: The original Michaelis constant: translation of the 1913 Michaelis-Menten paper, Biochemistry, 50, 8264–8269, 2011.
Karl, D. M., Beversdorf, L., Bjoerkman, K. M., Church, M. J., Martinez, A., and DeLong, E. F: Aerobic production of methane in the sea, Nat. Geosci., 1, 473–478, 2008.
Kelley, C: Methane oxidation potential in the water column of two diverse coastal marine sites, Biogeochemistry, 65, 105–120, 2003.
Kessler, J. D., Valentine, D. L., Redmond, M. C., Du, M., Chan, E. W., Mendes, S. D., Quiroz, E. W., Villanueva, C. J., Shusta, S. S., Werra, L. M., Yvon-Lewis, S. A., and Weber, T. C.: A persistent oxygen anomaly reveals the fate of spilled methane in the deep Gulf of Mexico, Science, 331, 312-315, 2011.
Knittel, K. and Boetius, A.: Anaerobic oxidation of methane: progress with an unknown process, Ann. Rev. Microbiol., 63, 311–334, 2009.
Lammers, S. and Suess, E.: An improved head-space analysis method for methane in seawater, Mar. Chem., 47, 115–125, 1994.
Loeng, H.: Features of the physical oceanographic conditions of the Barent Sea, in: Proceedings of the Pro Mare Symposium on Polar Marine Ecology, edited by: Sakshaug, E., Hopkins, C. C. E., and Øritsland, N. A., Polar Research, Trondheim, 5–18, 1991.
Martens, C. S. and Berner, R. A.: Interstitial water chemistry of anoxic Long Island Sound sediments. I. Dissolved gases, Limnol. Oceanogr., 22, 10–25, 1977.
Mau, S., Rehder, G., Arroyo, I. G., Gossler, J., and Suess, E.: Indications of a link between seismotectonics and CH4 release from seeps off Costa Rica, Geochem. Geophy. Geosy., 8, Q04003, https://doi.org/10.1029/2006GC001326, 2007a.
Mau, S., Valentine, D. L, Clark, J. R, Reed, J., Camilli, R., and Washburn, L: Dissolved methane distributions and air-sea flux in the plume of a massive seep field, Coal Oil Point, California, Geophys. Res. Lett., 34, L22603, https://doi.org/10.1029/2007GL031344, 2007b.
Mau, S., Heintz, M. B., and Valentine, D. L: Quantification of CH4 loss and transport in dissolved plumes of the Santa Barbara Channel, California, Cont. Shelf Res., 32, 110–120, 2012.
McDonald, I. R. and Murrell, J. C: The particulate methane monooxygenase gene pmoA and its use as a functional gene probe for methanotrophs, FEMS Microbiol. Lett., 156, 205–210, 1997.
McDonald, I. R., Bodrossy, L., Chen, Y., and Murrell, J. C.: Molecular ecology techniques for the study of aerobic methanotrophs, Appl. Environ. Microb., 74, 1305–1315, 2008.
Metcalf, W. W., Griffin, B. M., Cicchillo, R. M., Gao, J., Chandra Janga, S., Cooke, H. A., Cir-cello, B. T, Evans, B. S., Martens-Habbena, W., Stahl, D. A., and van der Donk, W. A.: Synthesis of methylphosphonic acid by marine microbes: a source for methane in the aerobic ocean, Science, 337, 1104–1107, 2012.
Murrell, J. C.: The aerobic methane oxidizing bacteria (Methanotrophs), in: Handbook of Hydrocarbon and Lipid Microbiology, edited by: Timmis, K. N., Springer, 1953–1966, 2010.
Muyzer, G., de Waal, E., and Uitterlinden, A.: Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA, Appl. Environ. Microbiol., 59, 695–700, 1993.
Niemann, H., Elvert, M., Hovland, M., Orcutt, B., Judd, A., Suck, I., Gutt, J., Joye, S., Damm, E., Finster, K., and Boetius, A.: Methane emission and consumption at a North Sea gas seep (Tommeliten area), Biogeosciences, 2, 335–351, https://doi.org/10.5194/bg-2-335-2005, 2005.
Niemann, H., Duarte, J., Hensen, C, Omoregie, E., Magalhaes, V H., Elvert, M., Pinheiro, L. M., Kopf, A., and Boetius, A.: Microbial methane turnover at mud volcanoes of the Gulf of Cadiz, Geochim. Cosmochim. Ac., 70, 5336–5355, 2006.
Pack, M. A., Heintz, M. B., Reeburgh, W. S., Trumbore, S. E., Valentine, D. L., Xu, X., and Druffel, E. R. M.: A method for measuring methane oxidation rates using low-levels of 14C-labeled methane and accelerator mass spectrometry, Limnol. Oceanogr., 9, 245–260, 2011.
Reeburgh, W. S.: Methane consumption in Cariaco Trench waters and sediments, Earth Planet. Sci. Lett., 28, 337–344, 1976.
Reeburgh, W. S.: Oceanic methane biogeochemistry, Chem. Rev., 107, 486–513, 2007.
Reeburgh, W. S., Ward, B. B., Whalen, S. C, Sandbeck, K. A., Kilpatrick, K. A., and Kerkhof, L. J.: Black Sea methane geochemistry, Deep-Sea Res., 38, S1189–S1210, 1991.
Sauter, E., Muyakshin, S. I., Charlou, J. L., Schlüter, M., Boetius, A., Jerosch, K., Damm, E., Foucher, J. P., Klages, M.: Methane discharge from a deep-sea submarine mud volcano into the upper water column by gas hydrate-coated methane bubbles, Earth Planet. Sci. Lett., 243, 354–365, 2006.
Schmitt, M., Faber, E., Botz, R., and Stoffers, P.: Extraction of methane from seawater using ultrasonic vacuum degassing, Anal. Chem., 63, 529–532, 1991.
Skogseth, R., Haugan, P. M., and Jakobsson, M.: Watermass transformations in Storfjorden, Cont. Shelf Res., 25, 667–695, 2005.
Smith, K. S., Costello, A. M., and Lidstrom, M. E.: Methane and trichloroethylene oxidation by an estuarine methanotroph, Methylobacter sp. strain BB5.1, Appl. Environ. Microbiol., 63, 4617–4462, 1997.
Suzuki, T., Nakamura, T., and Fuse, H.: Isolation of two novel marine ethylene-assimilating bacteria, Haliea species ETY-M and ETY-NAG, containing particulate methane monooxygenase-like genes Microbes Environ., 27, 54–60, 2012.
Tavormina, P. L, Ussier III, W., and Orphan, V. J.: Planktonic and sediment-associated aerobic methanotrophs in two seep systems along the North American Margin, Appl. Environ. Microbiol., 74, 3985–3995, 2008.
Teske, A., Wawer, C, Muyzer, G., and Ramsing, N. B.: Distribution of sulfate-reducing bacteria in a stratified fjord (Mariager fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments, Appl. Environ. Microbiol., 62, 1405–1415, 1996.
Treude, T., Boetius, A., Knittel, K., Wallmann, K., and Jorgensen, B. B.: Anaerobic oxidation of methane above gas hydrates at Hydrate Ridge, NE Pacific Ocean, Mar. Ecol.-Prog. Ser., 264, 1–14, 2003.
Valentine, D. L, Blanton, D. C, Reeburgh, W. S., and Kastner, M.: Water column methane oxidation adjacent to an area of active hydrate dissociation, Eel River Basin, Geochim. Cosmochim. Ac., 65, 2633–2640, 2001.
Valentine, D. L., Kessler, J. D., Redmond, M. C., Mendes, S. D., Heintz, M. B., Farwell, C., Hu, L., Kinnaman, F. S., Yvon-Lewis, S., Du, M., Chan, E. W., Tigreros, F. G., and Villanueva, C. J.: Propane respiration jump-starts microbial response to a deep oil spill, Science, 330, 208–211, 2010.
Wang, Q., Garrity, G. M., Tiedje, J. M., and Cole, J. R.: Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy, Appl. Environ. Microbiol., 73, 5261–5267, 2007.
Ward, B. B.: The subsurface methane maximum in the Southern California Bight, Cont. Shelf Res., 12, 735–752, 1992.
Ward, B. B. and Kilpatrick, K. A.: Relationship between substrate concentration and oxidation of ammonium and methane in a stratified water column, Cont. Shelf Res., 10, 1193–1208, 1990.
Ward, B. B. and Kilpatrick, K. A.: Methane oxidation associated with mid-depth methane maxima in the Southern California Bight, Cont. Shelf Res., 13, 1111–1122, 1993.
Ward, B. B., Kilpatrick, K. A., Novelli, P. C., and Scranton, M. I.: Methane oxidation and methane fluxes in the ocean surface layer and deep anoxic waters, Nature, 327, 226–229, 1987.
Ward, B. B., Kilpatrick, K. A., Wopat, A. E., Minnich, E. C, and Lidstrom, M. E.: Methane oxidation in Saanich inlet during summer stratification, Cont. Shelf Res., 9, 65–75, 1989.
Whiticar, M. J.: Carbon and hydrogen isotope systematics of bacterial formation and oxidation of methane, Chem. Geol., 161, 291–314, 1999.
Wiesenburg, D. A. and Guinasso, J. N. L: Equilibrium solubilities of methane, carbon monoxide, and hydrogen in water and sea water, J. Chem. Eng. Data, 24, 356–360, 1979.
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