Articles | Volume 16, issue 19
https://doi.org/10.5194/bg-16-3725-2019
© Author(s) 2019. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-16-3725-2019
© Author(s) 2019. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
30 Sep 2019
Research article |
| 30 Sep 2019
| 30 Sep 2019
Effects of eutrophication on sedimentary organic carbon cycling in five temperate lakes
Institute of Biogeochemistry and Pollutant Dynamics (IBP), ETH Zurich, Universitätstrasse 16, 8092 Zurich, Switzerland
Longhui Deng
Institute of Biogeochemistry and Pollutant Dynamics (IBP), ETH Zurich, Universitätstrasse 16, 8092 Zurich, Switzerland
Anja Michel
Institute of Biogeochemistry and Pollutant Dynamics (IBP), ETH Zurich, Universitätstrasse 16, 8092 Zurich, Switzerland
Philip Eickenbusch
Institute of Biogeochemistry and Pollutant Dynamics (IBP), ETH Zurich, Universitätstrasse 16, 8092 Zurich, Switzerland
Xingguo Han
Institute of Biogeochemistry and Pollutant Dynamics (IBP), ETH Zurich, Universitätstrasse 16, 8092 Zurich, Switzerland
Lorenzo Lagostina
Institute of Biogeochemistry and Pollutant Dynamics (IBP), ETH Zurich, Universitätstrasse 16, 8092 Zurich, Switzerland
Rong Zhu
Institute of Biogeochemistry and Pollutant Dynamics (IBP), ETH Zurich, Universitätstrasse 16, 8092 Zurich, Switzerland
Michael Sander
Institute of Biogeochemistry and Pollutant Dynamics (IBP), ETH Zurich, Universitätstrasse 16, 8092 Zurich, Switzerland
Martin H. Schroth
Institute of Biogeochemistry and Pollutant Dynamics (IBP), ETH Zurich, Universitätstrasse 16, 8092 Zurich, Switzerland
Stefano M. Bernasconi
Department of Earth Sciences, ETH Zurich, Sonneggstrasse 5, 8092 Zurich, Switzerland
Nathalie Dubois
Surface Waters Research – Management, Eawag, Swiss Federal Institute
of Aquatic Science and Technology, Überlandstrasse 133, 8600
Dübendorf, Switzerland
Department of Earth Sciences, ETH Zurich, Sonneggstrasse 5, 8092 Zurich, Switzerland
Mark A. Lever
CORRESPONDING AUTHOR
Institute of Biogeochemistry and Pollutant Dynamics (IBP), ETH Zurich, Universitätstrasse 16, 8092 Zurich, Switzerland
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P. A. Nauer, E. Chiri, J. Zeyer, and M. H. Schroth
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Unexpected scarcity of ANME archaea in hydrocarbon seeps within Monterey Bay
Faithful transfer of radiolarian silicon isotope signatures from water column to sediments in the South China Sea
Reviews and syntheses: Tufa microbialites on rocky coasts – towards an integrated terminology
Seafloor sediment characterization improves estimates of organic carbon standing stocks: an example from the Eastern Shore Islands, Nova Scotia, Canada
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Ancient clays support contemporary biogeochemical activity in the Critical Zone
The fate of fixed nitrogen in Santa Barbara Basin sediments during seasonal anoxia
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Geochemical consequences of oxygen diffusion from the oceanic crust into overlying sediments and its significance for biogeochemical cycles based on sediments of the northeast Pacific
Carbon sources of benthic fauna in temperate lakes across multiple trophic states
Deep-water inflow event increases sedimentary phosphorus release on a multi-year scale
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Biogeochemical impact of cable bacteria on coastal Black Sea sediment
Organic carbon characteristics in ice-rich permafrost in alas and Yedoma deposits, central Yakutia, Siberia
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Quantity and distribution of methane entrapped in sediments of calcareous, Alpine glacier forefields
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EGUsphere, https://doi.org/10.5194/egusphere-2024-3686, https://doi.org/10.5194/egusphere-2024-3686, 2024
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We presents the first coupled record of radiolarian silicon isotopes (δ30Sirad) from paired water column and surface sediment samples in the South China Sea. No significant discrepancies in δ30Sirad values were observed between plankton and sediment samples, implying a minimal impact of dissolution on δ30Sirad during deposition of radiolarian shells. This demonstrates the faithful preservation of the δ30Sirad signature and its potential for studying past changes in the marine silicon cycle.
Thomas W. Garner, J. Andrew G. Cooper, Alan M. Smith, Gavin M. Rishworth, and Matt Forbes
Biogeosciences, 21, 4785–4807, https://doi.org/10.5194/bg-21-4785-2024, https://doi.org/10.5194/bg-21-4785-2024, 2024
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There is a diverse and often conflicting suite of terminologies, classifications, and nomenclature applicable to the study of terrestrial carbonate deposits and microbialites (deposits that wholly or primarily accrete as a result of microbial activity). We review existing schemes, identify duplication and redundancy, and present a new integrated approach applicable to tufa microbialites on rock coasts.
Catherine Brenan, Markus Kienast, Vittorio Maselli, Christopher K. Algar, Benjamin Misiuk, and Craig J. Brown
Biogeosciences, 21, 4569–4586, https://doi.org/10.5194/bg-21-4569-2024, https://doi.org/10.5194/bg-21-4569-2024, 2024
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Quantifying how much organic carbon is stored in seafloor sediments is key to assessing how human activities can accelerate the process of carbon storage at the seabed, an important consideration for climate change. This study uses seafloor sediment maps to model organic carbon content. Carbon estimates were 12 times higher when assuming the absence of detailed sediment maps, demonstrating that high-resolution seafloor mapping is critically important for improved estimates of organic carbon.
Sophie Hage, Megan L. Baker, Nathalie Babonneau, Guillaume Soulet, Bernard Dennielou, Ricardo Silva Jacinto, Robert G. Hilton, Valier Galy, François Baudin, Christophe Rabouille, Clément Vic, Sefa Sahin, Sanem Açikalin, and Peter J. Talling
Biogeosciences, 21, 4251–4272, https://doi.org/10.5194/bg-21-4251-2024, https://doi.org/10.5194/bg-21-4251-2024, 2024
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Vanessa M. Alfonso, Peter M. Groffman, Zhongqi Cheng, and David E. Seidemann
EGUsphere, https://doi.org/10.5194/egusphere-2024-1165, https://doi.org/10.5194/egusphere-2024-1165, 2024
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This study sought to explore organic-mineral interactions by investigating the functional performance of exposed clays through measurements of biogeochemical processes occurring on these materials. Results indicate that ancient clays are contributing to contemporary biogeochemical processes at ecosystem and landscape scales by supporting an active microbial community and a wide range of nitrogen cycle processes encompassing mineralization, immobilization, nitrification, and denitrification.
Xuefeng Peng, David J. Yousavich, Annie Bourbonnais, Frank Wenzhöfer, Felix Janssen, Tina Treude, and David L. Valentine
Biogeosciences, 21, 3041–3052, https://doi.org/10.5194/bg-21-3041-2024, https://doi.org/10.5194/bg-21-3041-2024, 2024
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Biologically available (fixed) nitrogen (N) is a limiting nutrient for life in the ocean. Under low-oxygen conditions, fixed N is either removed via denitrification or retained via dissimilatory nitrate reduction to ammonia (DNRA). Using in situ incubations in the Santa Barbara Basin, which undergoes seasonal anoxia, we found that benthic denitrification was the dominant nitrate reduction process, while nitrate availability and organic carbon content control the relative importance of DNRA.
Nicole Burdanowitz, Gerhard Schmiedl, Birgit Gaye, Philipp M. Munz, and Hartmut Schulz
Biogeosciences, 21, 1477–1499, https://doi.org/10.5194/bg-21-1477-2024, https://doi.org/10.5194/bg-21-1477-2024, 2024
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We analyse benthic foraminifera, nitrogen isotopes and lipids in a sediment core from the Gulf of Oman to investigate how the oxygen minimum zone (OMZ) and bottom water (BW) oxygenation have reacted to climatic changes since 43 ka. The OMZ and BW deoxygenation was strong during the Holocene, but the OMZ was well ventilated during the LGM period. We found an unstable mode of oscillating oxygenation states, from moderately oxygenated in cold stadials to deoxygenated in warm interstadials in MIS 3.
Maxime Daviray, Emmanuelle Geslin, Nils Risgaard-Petersen, Vincent V. Scholz, Marie Fouet, and Edouard Metzger
Biogeosciences, 21, 911–928, https://doi.org/10.5194/bg-21-911-2024, https://doi.org/10.5194/bg-21-911-2024, 2024
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Coastal marine sediments are subject to major acidification processes because of climate change and human activities, but these processes can also result from biotic activity. We studied the sediment acidifcation effect on benthic calcareous foraminifera in intertidal mudflats. The strong pH decrease in sediments probably caused by cable bacteria led to calcareous test dissolution of living and dead foraminifera, threatening the test preservation and their robustness as environmental proxies.
Sebastian J. E. Krause, Jiarui Liu, David J. Yousavich, DeMarcus Robinson, David W. Hoyt, Qianhui Qin, Frank Wenzhöfer, Felix Janssen, David L. Valentine, and Tina Treude
Biogeosciences, 20, 4377–4390, https://doi.org/10.5194/bg-20-4377-2023, https://doi.org/10.5194/bg-20-4377-2023, 2023
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Methane is a potent greenhouse gas, and hence it is important to understand its sources and sinks in the environment. Here we present new data from organic-rich surface sediments below an oxygen minimum zone off the coast of California (Santa Barbara Basin) demonstrating the simultaneous microbial production and consumption of methane, which appears to be an important process preventing the build-up of methane in these sediments and the emission into the water column and atmosphere.
Sinan Xu, Bo Liu, Sandra Arndt, Sabine Kasten, and Zijun Wu
Biogeosciences, 20, 2251–2263, https://doi.org/10.5194/bg-20-2251-2023, https://doi.org/10.5194/bg-20-2251-2023, 2023
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We use a reactive continuum model based on a lognormal distribution (l-RCM) to inversely determine model parameters μ and σ at 123 sites across the global ocean. Our results show organic matter (OM) reactivity is more than 3 orders of magnitude higher in shelf than in abyssal regions. In addition, OM reactivity is higher than predicted in some specific regions, yet the l-RCM can still capture OM reactivity features in these regions.
Christiane Schmidt, Emmanuelle Geslin, Joan M. Bernhard, Charlotte LeKieffre, Mette Marianne Svenning, Helene Roberge, Magali Schweizer, and Giuliana Panieri
Biogeosciences, 19, 3897–3909, https://doi.org/10.5194/bg-19-3897-2022, https://doi.org/10.5194/bg-19-3897-2022, 2022
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This study is the first to show non-selective deposit feeding in the foraminifera Nonionella labradorica and the possible uptake of methanotrophic bacteria. We carried out a feeding experiment with a marine methanotroph to examine the ultrastructure of the cell and degradation vacuoles using transmission electron microscopy (TEM). The results revealed three putative methanotrophs at the outside of the cell/test, which could be taken up via non-targeted grazing in seeps or our experiment.
James P. J. Ward, Katharine R. Hendry, Sandra Arndt, Johan C. Faust, Felipe S. Freitas, Sian F. Henley, Jeffrey W. Krause, Christian März, Allyson C. Tessin, and Ruth L. Airs
Biogeosciences, 19, 3445–3467, https://doi.org/10.5194/bg-19-3445-2022, https://doi.org/10.5194/bg-19-3445-2022, 2022
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The seafloor plays an important role in the cycling of silicon (Si), a key nutrient that promotes marine primary productivity. In our model study, we disentangle major controls on the seafloor Si cycle to better anticipate the impacts of continued warming and sea ice melt in the Barents Sea. We uncover a coupling of the iron redox and Si cycles, dissolution of lithogenic silicates, and authigenic clay formation, comprising a Si sink that could have implications for the Arctic Ocean Si budget.
Hanni Vigderovich, Werner Eckert, Michal Elul, Maxim Rubin-Blum, Marcus Elvert, and Orit Sivan
Biogeosciences, 19, 2313–2331, https://doi.org/10.5194/bg-19-2313-2022, https://doi.org/10.5194/bg-19-2313-2022, 2022
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Anaerobic oxidation of methane (AOM) is one of the major processes limiting the release of the greenhouse gas methane from natural environments. Here we show that significant AOM exists in the methane zone of lake sediments in natural conditions and even after long-term (ca. 18 months) anaerobic slurry incubations with two stages. Methanogens were most likely responsible for oxidizing the methane, and humic substances and iron oxides are likely electron acceptors to support this oxidation.
Bjorn Sundby, Pierre Anschutz, Pascal Lecroart, and Alfonso Mucci
Biogeosciences, 19, 1421–1434, https://doi.org/10.5194/bg-19-1421-2022, https://doi.org/10.5194/bg-19-1421-2022, 2022
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A glacial–interglacial methane-fuelled redistribution of reactive phosphorus between the oceanic and sedimentary phosphorus reservoirs can occur in the ocean when falling sea level lowers the pressure on the seafloor, destabilizes methane hydrates, and triggers the dissolution of P-bearing iron oxides. The mass of phosphate potentially mobilizable from the sediment is similar to the size of the current oceanic reservoir. Hence, this process may play a major role in the marine phosphorus cycle.
Florian Lauryssen, Philippe Crombé, Tom Maris, Elliot Van Maldegem, Marijn Van de Broek, Stijn Temmerman, and Erik Smolders
Biogeosciences, 19, 763–776, https://doi.org/10.5194/bg-19-763-2022, https://doi.org/10.5194/bg-19-763-2022, 2022
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Surface waters in lowland regions have a poor surface water quality, mainly due to excess nutrients like phosphate. Therefore, we wanted to know the phosphate levels without humans, also called the pre-industrial background. Phosphate binds strongly to sediment particles, suspended in the river water. In this research we used sediments deposited by a river as an archive for surface water phosphate back to 1800 CE. Pre-industrial phosphate levels were estimated at one-third of the modern levels.
Gerard J. M. Versteegh, Andrea Koschinsky, Thomas Kuhn, Inken Preuss, and Sabine Kasten
Biogeosciences, 18, 4965–4984, https://doi.org/10.5194/bg-18-4965-2021, https://doi.org/10.5194/bg-18-4965-2021, 2021
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Oxygen penetrates sediments not only from the ocean bottom waters but also from the basement. The impact of the latter is poorly understood. We show that this basement oxygen has a clear impact on the nitrogen cycle, the redox state, and the distribution of manganese, nickel cobalt and organic matter in the sediments. This is important for (1) global biogeochemical cycles, (2) understanding sedimentary life and (3) the interpretation of the sediment record to reconstruct the past.
Annika Fiskal, Eva Anthamatten, Longhui Deng, Xingguo Han, Lorenzo Lagostina, Anja Michel, Rong Zhu, Nathalie Dubois, Carsten J. Schubert, Stefano M. Bernasconi, and Mark A. Lever
Biogeosciences, 18, 4369–4388, https://doi.org/10.5194/bg-18-4369-2021, https://doi.org/10.5194/bg-18-4369-2021, 2021
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Microbially produced methane can serve as a carbon source for freshwater macrofauna most likely through grazing on methane-oxidizing bacteria. This study investigates the contributions of different carbon sources to macrofaunal biomass. Our data suggest that the average contribution of methane-derived carbon is similar between different fauna but overall remains low. This is further supported by the low abundance of methane-cycling microorganisms.
Astrid Hylén, Sebastiaan J. van de Velde, Mikhail Kononets, Mingyue Luo, Elin Almroth-Rosell, and Per O. J. Hall
Biogeosciences, 18, 2981–3004, https://doi.org/10.5194/bg-18-2981-2021, https://doi.org/10.5194/bg-18-2981-2021, 2021
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Sediments in oxygen-depleted ocean areas release high amounts of phosphorus, feeding algae that consume oxygen upon degradation, leading to further phosphorus release. Oxygenation is thought to trap phosphorus in the sediment and break this feedback. We studied the sediment phosphorus cycle in a previously anoxic area after an inflow of oxic water. Surprisingly, the sediment phosphorus release increased, showing that feedbacks between phosphorus release and oxygen depletion can be hard to break.
Sebastiaan J. van de Velde, Rebecca K. James, Ine Callebaut, Silvia Hidalgo-Martinez, and Filip J. R. Meysman
Biogeosciences, 18, 1451–1461, https://doi.org/10.5194/bg-18-1451-2021, https://doi.org/10.5194/bg-18-1451-2021, 2021
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Some 540 Myr ago, animal life evolved in the ocean. Previous research suggested that when these early animals started inhabiting the seafloor, they retained phosphorus in the seafloor, thereby limiting photosynthesis in the ocean. We studied salt marsh sediments with and without animals and found that their impact on phosphorus retention is limited, which implies that their impact on the global environment might have been less drastic than previously assumed.
Martijn Hermans, Nils Risgaard-Petersen, Filip J. R. Meysman, and Caroline P. Slomp
Biogeosciences, 17, 5919–5938, https://doi.org/10.5194/bg-17-5919-2020, https://doi.org/10.5194/bg-17-5919-2020, 2020
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This paper demonstrates that the recently discovered cable bacteria are capable of using a mineral, known as siderite, as a source for the formation of iron oxides. This work also demonstrates that the activity of cable bacteria can lead to a distinct subsurface layer in the sediment that can be used as a marker for their activity.
Torben Windirsch, Guido Grosse, Mathias Ulrich, Lutz Schirrmeister, Alexander N. Fedorov, Pavel Y. Konstantinov, Matthias Fuchs, Loeka L. Jongejans, Juliane Wolter, Thomas Opel, and Jens Strauss
Biogeosciences, 17, 3797–3814, https://doi.org/10.5194/bg-17-3797-2020, https://doi.org/10.5194/bg-17-3797-2020, 2020
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To extend the knowledge on circumpolar deep permafrost carbon storage, we examined two deep permafrost deposit types (Yedoma and alas) in central Yakutia. We found little but partially undecomposed organic carbon as a result of largely changing sedimentation processes. The carbon stock of the examined Yedoma deposits is about 50 % lower than the general Yedoma domain mean, implying a very hetererogeneous Yedoma composition, while the alas is approximately 80 % below the thermokarst deposit mean.
Anna Plass, Christian Schlosser, Stefan Sommer, Andrew W. Dale, Eric P. Achterberg, and Florian Scholz
Biogeosciences, 17, 3685–3704, https://doi.org/10.5194/bg-17-3685-2020, https://doi.org/10.5194/bg-17-3685-2020, 2020
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We compare the cycling of Fe and Cd in sulfidic sediments of the Peruvian oxygen minimum zone. Due to the contrasting solubility of their sulfide minerals, the sedimentary Fe release and Cd burial fluxes covary with spatial and temporal distributions of H2S. Depending on the solubility of their sulfide minerals, sedimentary trace metal fluxes will respond differently to ocean deoxygenation/expansion of H2S concentrations, which may change trace metal stoichiometry of upwelling water masses.
Biqing Zhu, Manuel Kübler, Melanie Ridoli, Daniel Breitenstein, and Martin H. Schroth
Biogeosciences, 17, 3613–3630, https://doi.org/10.5194/bg-17-3613-2020, https://doi.org/10.5194/bg-17-3613-2020, 2020
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We provide evidence that the greenhouse gas methane (CH4) is enclosed in calcareous glacier-forefield sediments across Switzerland. Geochemical analyses confirmed that this ancient CH4 has its origin in the calcareous parent bedrock. Our estimate of the total quantity of CH4 enclosed in sediments across Switzerland indicates a large CH4 mass (~105 t CH4). We produced evidence that CH4 is stable in its enclosed state, but additional experiments are needed to elucidate its long-term fate.
Matteo Puglini, Victor Brovkin, Pierre Regnier, and Sandra Arndt
Biogeosciences, 17, 3247–3275, https://doi.org/10.5194/bg-17-3247-2020, https://doi.org/10.5194/bg-17-3247-2020, 2020
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A reaction-transport model to assess the potential non-turbulent methane flux from the East Siberian Arctic sediments to water columns is applied here. We show that anaerobic oxidation of methane (AOM) is an efficient filter except for high values of sedimentation rate and advective flow, which enable considerable non-turbulent steady-state methane fluxes. Significant transient methane fluxes can also occur during the building-up phase of the AOM-performing biomass microbial community.
Kyle Delwiche, Junyao Gu, Harold Hemond, and Sarah P. Preheim
Biogeosciences, 17, 3135–3147, https://doi.org/10.5194/bg-17-3135-2020, https://doi.org/10.5194/bg-17-3135-2020, 2020
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In this study, we investigate whether bubbles transport sediments containing arsenic and cyanobacteria from the bottom to the top of a polluted lake. We measured arsenic and cyanobacteria from bubble traps in the lake and from an experimental bubble column in the laboratory. We found that bubble transport was not an important source of arsenic in the surface waters but that bubbles could transport enough cyanobacteria to the surface to exacerbate harmful algal blooms.
Nathaniel Kemnitz, William M. Berelson, Douglas E. Hammond, Laura Morine, Maria Figueroa, Timothy W. Lyons, Simon Scharf, Nick Rollins, Elizabeth Petsios, Sydnie Lemieux, and Tina Treude
Biogeosciences, 17, 2381–2396, https://doi.org/10.5194/bg-17-2381-2020, https://doi.org/10.5194/bg-17-2381-2020, 2020
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Our paper shows how sedimentation in a very low oxygen setting provides a unique record of environmental change. We look at the past 250 years through the filter of sediment accumulation via radioisotope dating and other physical and chemical analyses of these sediments. We conclude, remarkably, that there has been very little change in net sediment mass accumulation through the past 100–150 years, yet just prior to 1900 CE, sediments were accumulating at 50 %–70 % of today's rate.
Dario Fussmann, Avril Jean Elisabeth von Hoyningen-Huene, Andreas Reimer, Dominik Schneider, Hana Babková, Robert Peticzka, Andreas Maier, Gernot Arp, Rolf Daniel, and Patrick Meister
Biogeosciences, 17, 2085–2106, https://doi.org/10.5194/bg-17-2085-2020, https://doi.org/10.5194/bg-17-2085-2020, 2020
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Dolomite (CaMg(CO3)2) is supersaturated in many aquatic settings (e.g., seawater) on modern Earth but does not precipitate directly from the fluid, a fact known as the dolomite problem. The widely acknowledged concept of dolomite precipitation involves microbial extracellular polymeric substances (EPSs) and anoxic conditions as important drivers. In contrast, results from Lake Neusiedl support an alternative concept of Ca–Mg carbonate precipitation under aerobic and alkaline conditions.
Aurèle Vuillemin, André Friese, Richard Wirth, Jan A. Schuessler, Anja M. Schleicher, Helga Kemnitz, Andreas Lücke, Kohen W. Bauer, Sulung Nomosatryo, Friedhelm von Blanckenburg, Rachel Simister, Luis G. Ordoñez, Daniel Ariztegui, Cynthia Henny, James M. Russell, Satria Bijaksana, Hendrik Vogel, Sean A. Crowe, Jens Kallmeyer, and the Towuti Drilling Project
Science team
Biogeosciences, 17, 1955–1973, https://doi.org/10.5194/bg-17-1955-2020, https://doi.org/10.5194/bg-17-1955-2020, 2020
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Ferruginous lakes experience restricted primary production due to phosphorus trapping by ferric iron oxides under oxic conditions. We report the presence of large crystals of vivianite, a ferrous iron phosphate, in sediments from Lake Towuti, Indonesia. We address processes of P retention linked to diagenesis of iron phases. Vivianite crystals had light Fe2+ isotope signatures and contained mineral inclusions consistent with antecedent processes of microbial sulfate and iron reduction.
Sonja Geilert, Patricia Grasse, Kristin Doering, Klaus Wallmann, Claudia Ehlert, Florian Scholz, Martin Frank, Mark Schmidt, and Christian Hensen
Biogeosciences, 17, 1745–1763, https://doi.org/10.5194/bg-17-1745-2020, https://doi.org/10.5194/bg-17-1745-2020, 2020
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Marine silicate weathering is a key process of the marine silica cycle; however, its controlling processes are not well understood. In the Guaymas Basin, silicate weathering has been studied under markedly differing ambient conditions. Environmental settings like redox conditions or terrigenous input of reactive silicates appear to be major factors controlling marine silicate weathering. These factors need to be taken into account in future oceanic mass balances of Si and in modeling studies.
Jessica B. Volz, Laura Haffert, Matthias Haeckel, Andrea Koschinsky, and Sabine Kasten
Biogeosciences, 17, 1113–1131, https://doi.org/10.5194/bg-17-1113-2020, https://doi.org/10.5194/bg-17-1113-2020, 2020
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Potential future deep-sea mining of polymetallic nodules at the seafloor is expected to severely harm the marine environment. However, the consequences on deep-sea ecosystems are still poorly understood. This study on surface sediments from man-made disturbance tracks in the Pacific Ocean shows that due to the removal of the uppermost sediment layer and thereby the loss of organic matter, the geochemical system in the sediments is disturbed for millennia before reaching a new equilibrium.
Ralf Conrad, Melanie Klose, and Alex Enrich-Prast
Biogeosciences, 17, 1063–1069, https://doi.org/10.5194/bg-17-1063-2020, https://doi.org/10.5194/bg-17-1063-2020, 2020
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Lake sediments release the greenhouse gas CH4. Acetate is an important precursor. Although Amazonian lake sediments all contained acetate-consuming methanogens, measurement of the turnover of labeled acetate showed that some sediments converted acetate not to CH4 plus CO2, as expected, but only to CO2. Our results indicate the operation of acetate-oxidizing microorganisms couples the oxidation process to syntrophic methanogenic partners and/or to the reduction of organic compounds.
Jens Rassmann, Eryn M. Eitel, Bruno Lansard, Cécile Cathalot, Christophe Brandily, Martial Taillefert, and Christophe Rabouille
Biogeosciences, 17, 13–33, https://doi.org/10.5194/bg-17-13-2020, https://doi.org/10.5194/bg-17-13-2020, 2020
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In this paper, we use a large set of measurements made using in situ and lab techniques to elucidate the cause of dissolved inorganic carbon fluxes in sediments from the Rhône delta and its companion compound alkalinity, which carries the absorption capacity of coastal waters with respect to atmospheric CO2. We show that sediment processes (sulfate reduction, FeS precipitation and accumulation) are crucial in generating the alkalinity fluxes observed in this study by in situ incubation chambers.
Sophie A. L. Paul, Matthias Haeckel, Michael Bau, Rajina Bajracharya, and Andrea Koschinsky
Biogeosciences, 16, 4829–4849, https://doi.org/10.5194/bg-16-4829-2019, https://doi.org/10.5194/bg-16-4829-2019, 2019
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We studied the upper 10 m of deep-sea sediments, including pore water, in the Peru Basin to understand small-scale variability of trace metals. Our results show high spatial variability related to topographical variations, which in turn impact organic matter contents, degradation processes, and trace metal cycling. Another interesting finding was the influence of dissolving buried nodules on the surrounding sediment and trace metal cycling.
Sarah Paradis, Antonio Pusceddu, Pere Masqué, Pere Puig, Davide Moccia, Tommaso Russo, and Claudio Lo Iacono
Biogeosciences, 16, 4307–4320, https://doi.org/10.5194/bg-16-4307-2019, https://doi.org/10.5194/bg-16-4307-2019, 2019
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Chronic deep bottom trawling in the Gulf of Castellammare (SW Mediterranean) erodes large volumes of sediment, exposing over-century-old sediment depleted in organic matter. Nevertheless, the arrival of fresh and nutritious sediment recovers superficial organic matter in trawling grounds and leads to high turnover rates, partially and temporarily mitigating the impacts of bottom trawling. However, this deposition is ephemeral and it will be swiftly eroded by the passage of the next trawler.
Zhichao Zhou, Bo Liang, Li-Ying Wang, Jin-Feng Liu, Bo-Zhong Mu, Hojae Shim, and Ji-Dong Gu
Biogeosciences, 16, 4229–4241, https://doi.org/10.5194/bg-16-4229-2019, https://doi.org/10.5194/bg-16-4229-2019, 2019
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This study shows a core bacterial microbiome with a small proportion of shared operational taxonomic units of common sequences among all oil reservoirs. Dominant methanogenesis shifts from the hydrogenotrophic pathway in water phase to the acetoclastic pathway in the oil phase at high temperatures, but the opposite is true at low temperatures. There are also major functional metabolism differences between the two phases for amino acids, hydrocarbons, and carbohydrates.
Hanni Vigderovich, Lewen Liang, Barak Herut, Fengping Wang, Eyal Wurgaft, Maxim Rubin-Blum, and Orit Sivan
Biogeosciences, 16, 3165–3181, https://doi.org/10.5194/bg-16-3165-2019, https://doi.org/10.5194/bg-16-3165-2019, 2019
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Microbial iron reduction participates in important biogeochemical cycles. In the last decade iron reduction has been observed in many aquatic sediments below its classical zone, in the methane production zone, suggesting a link between the two cycles. Here we present evidence for microbial iron reduction in the methanogenic depth of the oligotrophic SE Mediterranean continental shelf using mainly geochemical and microbial sedimentary profiles and suggest possible mechanisms for this process.
Haoyi Yao, Wei-Li Hong, Giuliana Panieri, Simone Sauer, Marta E. Torres, Moritz F. Lehmann, Friederike Gründger, and Helge Niemann
Biogeosciences, 16, 2221–2232, https://doi.org/10.5194/bg-16-2221-2019, https://doi.org/10.5194/bg-16-2221-2019, 2019
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How methane is transported in the sediment is important for the microbial community living on methane. Here we report an observation of a mini-fracture that facilitates the advective gas transport of methane in the sediment, compared to the diffusive fluid transport without a fracture. We found contrasting bio-geochemical signals in these different transport modes. This finding can help to fill the gap in the fracture network system in modulating methane dynamics in surface sediments.
Laura A. Casella, Sixin He, Erika Griesshaber, Lourdes Fernández-Díaz, Martina Greiner, Elizabeth M. Harper, Daniel J. Jackson, Andreas Ziegler, Vasileios Mavromatis, Martin Dietzel, Anton Eisenhauer, Sabino Veintemillas-Verdaguer, Uwe Brand, and Wolfgang W. Schmahl
Biogeosciences, 15, 7451–7484, https://doi.org/10.5194/bg-15-7451-2018, https://doi.org/10.5194/bg-15-7451-2018, 2018
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Biogenic carbonates record past environmental conditions. Fossil shell chemistry and microstructure change as metastable biogenic carbonates are replaced by inorganic calcite. Simulated diagenetic alteration at 175 °C of different shell microstructures showed that (nacreous) shell aragonite and calcite were partially replaced by coarse inorganic calcite crystals due to dissolution–reprecipitation reactions. EBSD maps allowed for qualitative assessment of the degree of diagenetic overprint.
Wytze K. Lenstra, Matthias Egger, Niels A. G. M. van Helmond, Emma Kritzberg, Daniel J. Conley, and Caroline P. Slomp
Biogeosciences, 15, 6979–6996, https://doi.org/10.5194/bg-15-6979-2018, https://doi.org/10.5194/bg-15-6979-2018, 2018
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We show that burial rates of phosphorus (P) in an estuary in the northern Baltic Sea are very high. We demonstrate that at high sedimentation rates, P retention in the sediment is related to the formation of vivianite. With a reactive transport model, we assess the sensitivity of sedimentary vivianite formation. We suggest that enrichments of iron and P in the sediment are linked to periods of enhanced riverine input of Fe, which subsequently strongly enhances P burial in coastal sediments.
Jiarui Liu, Gareth Izon, Jiasheng Wang, Gilad Antler, Zhou Wang, Jie Zhao, and Matthias Egger
Biogeosciences, 15, 6329–6348, https://doi.org/10.5194/bg-15-6329-2018, https://doi.org/10.5194/bg-15-6329-2018, 2018
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Our work provides new insights into the biogeochemical cycling of iron, methane and phosphorus. We found that vivianite, an iron-phosphate mineral, is pervasive in methane-rich sediments, suggesting that iron reduction at depth is coupled to phosphorus and methane cycling on a much greater spatial scale than previously assumed. Acting as an important burial mechanism for iron and phosphorus, vivianite authigenesis may be an under-considered process in both modern and ancient settings alike.
Marc A. Besseling, Ellen C. Hopmans, R. Christine Boschman, Jaap S. Sinninghe Damsté, and Laura Villanueva
Biogeosciences, 15, 4047–4064, https://doi.org/10.5194/bg-15-4047-2018, https://doi.org/10.5194/bg-15-4047-2018, 2018
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Benthic archaea comprise a significant part of the total prokaryotic biomass in marine sediments. Here, we compared the archaeal diversity and intact polar lipid (IPL) composition in both surface and subsurface sediments with different oxygen regimes in the Arabian Sea oxygen minimum zone. The oxygenated sediments were dominated by Thaumarchaeota and IPL-GDGT-0. The anoxic sediment contained highly diverse archaeal communities and high relative abundances of IPL-GDGT-1 to -4.
Georgina Robinson, Thomas MacTavish, Candida Savage, Gary S. Caldwell, Clifford L. W. Jones, Trevor Probyn, Bradley D. Eyre, and Selina M. Stead
Biogeosciences, 15, 1863–1878, https://doi.org/10.5194/bg-15-1863-2018, https://doi.org/10.5194/bg-15-1863-2018, 2018
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This study examined the effect of adding carbon to a sediment-based effluent treatment system to treat nitrogen-rich aquaculture waste. The research was conducted in incubation chambers to measure the exchange of gases and nutrients across the sediment–water interface and examine changes in the sediment microbial community. Adding carbon increased the amount of nitrogen retained in the treatment system, thereby reducing the levels of nitrogen needing to be discharged to the environment.
Daniele Brigolin, Christophe Rabouille, Bruno Bombled, Silvia Colla, Salvatrice Vizzini, Roberto Pastres, and Fabio Pranovi
Biogeosciences, 15, 1347–1366, https://doi.org/10.5194/bg-15-1347-2018, https://doi.org/10.5194/bg-15-1347-2018, 2018
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We present the result of a study carried out in the north-western Adriatic Sea by combining two different types of models with field sampling. A mussel farm was taken as a local source of perturbation to the natural flux of particulate organic carbon to the sediment. Differences in fluxes were primarily associated with mussel physiological conditions. Although restricted, these changes in particulate organic carbon fluxes induced visible effects on sediment biogeochemistry.
Volker Brüchert, Lisa Bröder, Joanna E. Sawicka, Tommaso Tesi, Samantha P. Joye, Xiaole Sun, Igor P. Semiletov, and Vladimir A. Samarkin
Biogeosciences, 15, 471–490, https://doi.org/10.5194/bg-15-471-2018, https://doi.org/10.5194/bg-15-471-2018, 2018
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We determined the aerobic and anaerobic degradation rates of land- and marine-derived organic material in East Siberian shelf sediment. Marine plankton-derived organic carbon was the main source for the oxic dissolved carbon dioxide production, whereas terrestrial organic material significantly contributed to the production of carbon dioxide under anoxic conditions. Our direct degradation rate measurements provide new constraints for the present-day Arctic marine carbon budget.
Jack J. Middelburg
Biogeosciences, 15, 413–427, https://doi.org/10.5194/bg-15-413-2018, https://doi.org/10.5194/bg-15-413-2018, 2018
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Organic carbon processing at the seafloor is studied by geologists to better understand the sedimentary record, by biogeochemists to quantify burial and respiration, by organic geochemists to elucidate compositional changes, and by ecologists to follow carbon transfers within food webs. These disciplinary approaches have their strengths and weaknesses. This award talk provides a synthesis, highlights the role of animals in sediment carbon processing and presents some new concepts.
Craig Smeaton, William E. N. Austin, Althea L. Davies, Agnes Baltzer, John A. Howe, and John M. Baxter
Biogeosciences, 14, 5663–5674, https://doi.org/10.5194/bg-14-5663-2017, https://doi.org/10.5194/bg-14-5663-2017, 2017
Short summary
Short summary
Fjord sediments are recognised as hotspots for the burial and long-term storage of carbon. In this study, we use the Scottish fjords as a natural laboratory. Using geophysical and geochemical analysis in combination with upscaling techniques, we have generated the first full national sedimentary C inventory for a fjordic system. The results indicate that the Scottish fjords on a like-for-like basis are more effective as C stores than their terrestrial counterparts, including Scottish peatlands.
Cited articles
Anderson, J. G. and Meadows, P. S.: Microenvironments in Marine-Sediments,
P. Roy. Soc. Edinb. B, 76, 1–16, 1978.
Anderson, N. J., Dietz, R. D., and Engstrom, D. R.: Land-use change, not
climate, controls organic carbon burial in lakes, P. Roy. Soc. B-Biol. Sci., 280, 20131278, https://doi.org/10.1098/rspb.2013.1278,
2013.
Anderson, N. J., Bennion, H., and Lotter, A. F.: Lake eutrophication and its
implications for organic carbon sequestration in Europe, Glob. Change
Biol., 20, 2741–2751, 2014.
AquaPlus: Entwicklung des Gesamtphosphors im Zugersee anhand der im
Sediment eingelagerten Kieselalgen, Bericht zuhanden des Amtes für
Umweltschutz des Kantons Zug, 48 pp., 2001.
AquaPlus: Untersuchung der Fliessgewässer und Seen im Kanton Zug
und im Einzugsgebiet des Zugersees, Bericht zuhanden des Amtes für
Umweltschutz des Kantons Zug, 86 pp., 2004a.
AquaPlus: Entwicklung des Gesamtphosphors im Greifensee anhand der im
Sediment eingelagerten Kieselalgen, Bericht zuhanden des Amtes für
Abfall, Wasser, Energie und Luft des Kantons Zürich, 2004b.
BAFU: Einzugsgebietsgliederung Schweiz EZGG-CH, Bundesamt für
Umwelt, Bern, available at: http://www.bafu.admin.ch/hydrologie/01835/11452/index.html
(last access: 18 March 2019), 2013.
Bastviken, D., Cole, J., Pace, M., and Tranvik, L.: Methane emissions from
lakes: Dependence of lake characteristics, two regional assessments, and a
global estimate, Global Biogeochem. Cy., 18, Gb4009, https://doi.org/10.1029/2004gb002238, 2004.
Battin, T. J., Luyssaert, S., Kaplan, L. A., Aufdenkampe, A. K., Richter,
A., and Tranvik, L. J.: The boundless carbon cycle, Nat. Geosci., 2, 598–600,
2009.
Binford, M. W.: Calculation and uncertainty analysis of 210Pb dates for
PIRLA project lake sediment cores, J. Paleolimnol., 3, 253–267,
1990.
Blais, J. M. and Kalff, J.: The Influence of Lake Morphometry on Sediment
Focusing, Limnol. Oceanogr., 40, 582–588, 1995.
Bloesch, J. and Burns, N. M.: A Critical-Review of Sedimentation Trap
Technique, Schweiz. Z. Hydrol., 42, 15–55, 1980.
Bostrom, B., Pettersson, A. K., and Ahlgren, I.: Seasonal Dynamics of a
Cyanobacteria-Dominated Microbial Community in Surface Sediments of a
Shallow, Eutrophic Lake, Aquat. Sci., 51, 153–178, 1989.
Boyle, J.: Redox remobilization and the heavy metal record in lake
sediments: a modelling approach, J. Paleolimnol., 26, 423–431,
2001.
Braunschweig, J., Bosch, J., Heister, K., Kuebeck, C., and Meckenstock, R.
U.: Reevaluation of colorimetric iron determination methods commonly used in
geomicrobiology, J. Microbiol. Meth., 89, 41–48, 2012.
Breitburg, D.: Effects of hypoxia, and the balance between hypoxia and
enrichment, on coastal fishes and fisheries, Estuaries, 25, 767–781, 2002.
Buergi, H. R. and Stadelmann, P.: Change of phytoplankton diversity during
long-term restoration of Lake Baldegg (Switzerland), Int. Ver. Theor. Angew.,
27, 574–581, 2000.
Burdige, D. J.: Preservation of organic matter in marine sediments:
Controls, mechanisms, and an imbalance in sediment organic carbon budgets?,
Chem. Rev., 107, 467–485, 2007.
Canfield, D. E.: Reactive Iron in Marine-Sediments, Geochim. Cosmochim. Ac.,
53, 619–632, 1989.
Canfield, D. E., Kristensen, E., and Thamdrup, B.: Aquatic Geomicrobiology,
Adv. Mar. Biol., 48, 1–640, 2005.
Canfield, D. E. and Thamdrup, B.: Towards a consistent classification scheme
for geochemical environments, or, why we wish the term “suboxic” would go
away, Geobiology, 7, 385–392, 2009.
Capone, D. G. and Kiene, R. P.: Comparison of Microbial Dynamics in Marine
and Fresh-Water Sediments – Contrasts in Anaerobic Carbon Catabolism, Limnol.
Oceanogr., 33, 725–749, 1988.
Chen, X. H., Andersen, T. J., Morono, Y., Inagaki, F., Jorgensen, B. B., and
Lever, M. A.: Bioturbation as a key driver behind the dominance of Bacteria
over Archaea in near-surface sediment, Sci. Rep.-UK, 7, 2400, https://doi.org/10.1038/s41598-017-02295-x, 2017.
Cline, J. D.: Spectrophotometric Determination of Hydrogen Sulfide in
Natural Waters, Limnol. Oceanogr., 14, 454, https://doi.org/10.4319/lo.1969.14.3.0454, 1969.
Cole, J. J., Prairie, Y. T., Caraco, N. F., McDowell, W. H., Tranvik, L. J.,
Striegl, R. G., Duarte, C. M., Kortelainen, P., Downing, J. A., Middelburg,
J. J., and Melack, J.: Plumbing the global carbon cycle: Integrating inland
waters into the terrestrial carbon budget, Ecosystems, 10, 171–184, 2007.
Conley, D. J., Paerl, H. W., Howarth, R. W., Boesch, D. F., Seitzinger, S.
P., Havens, K. E., Lancelot, C., and Likens, G. E.: ECOLOGY Controlling
Eutrophication: Nitrogen and Phosphorus, Science, 323, 1014–1015, 2009.
Conrad, R., Noll, M., Claus, P., Klose, M., Bastos, W. R., and Enrich-Prast, A.:
Stable carbon isotope discrimination and microbiology of methane formation in tropical anoxic lake sediments, Biogeosciences, 8, 795–814, https://doi.org/10.5194/bg-8-795-2011, 2011.
Correll, D. L.: Phosphorus: A rate limiting nutrient in surface waters,
Poultry Sci., 78, 674–682, 1999.
Cubasch, U., Wuebbles, D., Chen, D. L., Facchini, M. C., Frame, D.,
Mahowald, N., Winther, J. G., Brauer, A., Gates, L., Janssen, E., Kaspar,
F., Korper, J., Masson-Delmotte, V., Meinshausen, M., Menne, M., Richter,
C., Schulz, M., Schulzweida, U., Stevens, B., Sutton, R., Trenberth, K.,
Turkes, M., and Ward, D. S.: Climate Change 2013 The Physical Science Basis
Working Group I Contribution to the Fifth Assessment Report of the
Intergovernmental Panel on Climate Change Introduction, Climate Change 2013:
The Physical Science Basis, 2014, 119–158, 2014.
Davis, M. B. and Ford, M. S. J.: Sediment Focusing in Mirror Lake,
New-Hampshire, Limnol. Oceanogr., 27, 137–150, 1982.
Dean, W. E. and Gorham, E.: Magnitude and significance of carbon burial in
lakes, reservoirs, and peatlands, Geology, 26, 535–538, 1998.
Deng, L., Fiskal, A., Han, X., Dubois, N., Bernasconi, S. M., and Lever, M.
A.: Improving the accuracy of flow cytometric quantification of microbial
populations in sediments: importance of cell staining procedures, Front
Microbiol., 10, 720, https://doi.org/10.3389/fmicb.2019.00720, 2019.
Drake, H. L., Kusel, K., and Matthies, C.: Acetogenic Prokaryotes,
Prokaryotes: A Handbook on the Biology of Bacteria, Vol. 2, 3rd Edn., 354–420,
https://doi.org/10.1007/0-387-30742-7_13, 2006.
Einsele, G., Yan, J. P., and Hinderer, M.: Atmospheric carbon burial in
modern lake basins and its significance for the global carbon budget, Global
Planet. Change, 30, 167–195, 2001.
Fischer, U. R. and Velimirov, B.: High control of bacterial production by
viruses in a eutrophic oxbow lake, Aquat. Microb. Ecol., 27, 1–12, 2002.
Froelich, P. N., Klinkhammer, G. P., Bender, M. L., Luedtke, N. A., Heath,
G. R., Cullen, D., Dauphin, P., Hammond, D., Hartman, B., and Maynard, V.:
Early Oxidation of Organic-Matter in Pelagic Sediments of the Eastern
Equatorial Atlantic – Suboxic Diagenesis, Geochim. Cosmochim. Ac., 43,
1075–1090, 1979.
Gachter, R. and Muller, B.: Why the phosphorus retention of lakes does not
necessarily depend on the oxygen supply to their sediment surface, Limnol.
Oceanogr., 48, 929–933, 2003.
Gächter, R. and Wehrli, B.:
Ten years of artificial mixing and oxygenation: No effect on the internal phosphorus loading of two eutrophic lakes, Environ. Sci. Technol., 32, 3659–3665,
https://doi.org/10.1021/es980418l, 1998.
Giles, C. D., Isles, P. D. F., Manley, T., Xu, Y. Y., Druschel, G. K., and
Schroth, A. W.: The mobility of phosphorus, iron, and manganese through the
sediment-water continuum of a shallow eutrophic freshwater lake under
stratified and mixed water-column conditions, Biogeochemistry, 127, 15–34,
2016.
Gontikaki, E., Polymenakou, P. N., Thornton, B., Narayanaswamy, B. E.,
Black, K., Tselepides, A., and Witte, U.: Microbial Response to Organic
Matter Enrichment in the Oligotrophic Levantine Basin (Eastern
Mediterranean), Geomicrobiol. J., 29, 648–655, 2012.
Gorham, E., Lund, J. W. G., Sanger, J. E., and Dean, W. E.: Some
Relationships between Algal Standing Crop, Water Chemistry, and Sediment
Chemistry in English Lakes, Limnol. Oceanogr., 19, 601–617, 1974.
Gruca-Rokosz, R.: Diffusive Fluxes of CH4 and CO2 at the Sediment-Overlying
Water Interface in Reservoir Ecosystems, J. Ecol. Eng., 19, 158–164, 2018.
Haglund, A. L., Lantz, P., Tornblom, E., and Tranvik, L.: Depth distribution
of active bacteria and bacterial activity in lake sediment, FEMS Microbiol.
Ecol., 46, 31–38, 2003.
Heathcote, A. J. and Downing, J. A.: Impacts of Eutrophication on Carbon
Burial in Freshwater Lakes in an Intensively Agricultural Landscape,
Ecosystems, 15, 60–70, 2012.
Hebting, Y., Schaeffer, P., Behrens, A., Adam, P., Schmitt, G.,
Schneckenburger, P., Bernasconi, S. M., and Albrecht, P.: Biomarker evidence
for a major preservation pathway of sedimentary organic carbon, Science,
312, 1627–1631, 2006.
Hedges, J. I., Eglinton, G., Hatcher, P. G., Kirchman, D. L., Arnosti, C.,
Derenne, S., Evershed, R. P., Kogel-Knabner, I., de Leeuw, J. W., Littke,
R., Michaelis, W., and Rullkotter, J.: The molecularly-uncharacterized
component of nonliving organic matter in natural environments, Org. Geochem.,
31, 945–958, 2000.
Hoehler, T. M., Alperin, M. J., Albert, D. B., and Martens, C. S.:
Thermodynamic control on hydrogen concentrations in anoxic sediments,
Geochim. Cosmochim. Ac., 62, 1745–1756, 1998.
Hoehler, T. M., Albert, D. B., Alperin, M. J., and Martens, C. S.:
Acetogenesis from CO2 in an anoxic marine sediment, Limnol. Oceanogr., 44,
662–667, 1999.
Hoehler, T. M., Alperin, M. J., Albert, D. B., and Martens, C. S.: Apparent
minimum free energy requirements for methanogenic Archaea and
sulfate-reducing bacteria in an anoxic marine sediment, FEMS Microbiol. Ecol.,
38, 33–41, 2001.
Holgerson, M. A. and Raymond, P. A.: Large contribution to inland water CO2
and CH4 emissions from very small ponds, Nat. Geosci., 9, 222–226, 2016.
Hyun, J.-H., Kim, S.-H., Mok, J.-S., Cho, H., Lee, T., Vandieken, V., and Thamdrup, B.:
Manganese and iron reduction dominate organic carbon oxidation in surface sediments of
the deep Ulleung Basin, East Sea, Biogeosciences, 14, 941–958, https://doi.org/10.5194/bg-14-941-2017, 2017.
Jørgensen, B. B. and Kasten, S.: Sulfur cycling and methane oxidation, in: Marine geochemistry, Springer, Berlin, Heidelberg, 271–309, 2006.
Katsev, S. and Crowe, S. A.: Organic carbon burial efficiencies in
sediments: The power law of mineralization revisited, Geology, 43, 607–610,
2015.
Kluepfel, L., Keiluweit, M., Kleber, M., and Sander, M.: Redox Properties of
Plant Biomass-Derived Black Carbon (Biochar), Environ. Sci. Technol., 48,
5601–5611, 2014.
Klupfel, L., Piepenbrock, A., Kappler, A., and Sander, M.: Humic substances
as fully regenerable electron acceptors in recurrently anoxic environments,
Nat. Geosci., 7, 195–200, 2014.
Kristensen, E.: Organic matter diagenesis at the oxic/anoxic interface in
coastal marine sediments, with emphasis on the role of burrowing animals,
Hydrobiologia, 426, 1–24, 2000.
Kristensen, E., Penha-Lopes, G., Delefosse, M., Valdemarsen, T., Quintana,
C. O., and Banta, G. T.: What is bioturbation? The need for a precise
definition for fauna in aquatic sciences, Mar. Ecol.-Prog. Ser., 446, 285–302,
2012.
Lalonde, K., Mucci, A., Ouellet, A., and Gelinas, Y.: Preservation of
organic matter in sediments promoted by iron, Nature, 483, 198–200, 2012.
Lehman, J. T.: Reconstructing Rate of Accumulation of Lake Sediment – Effect
of Sediment Focusing, Quaternary Res., 5, 541–550, 1975.
Lehmann, M. F., Bernasconi, S. M., Barbieri, A., and McKenzie, J. A.:
Preservation of organic matter and alteration of its carbon and nitrogen
isotope composition during simulated and in situ early sedimentary
diagenesis, Geochim. Cosmochim. Ac., 66, 3573–3584, 2002.
Lever, M. A.: Functional gene surveys from ocean drilling expeditions a
review and perspective, FEMS Microbiol. Ecol., 84, 1–23, 2013.
Lever, M. A. and Teske, A. P.: Diversity of Methane-Cycling Archaea in
Hydrothermal Sediment Investigated by General and Group-Specific PCR
Primers, Appl. Environ. Microb., 81, 1426–1441, 2015.
Liechti, P.: Der Zustand der Seen in der Schweiz, Bundesamt für Umwelt,
Bern, 1994.
Liu, Y. Q., Conrad, R., Yao, T. D., Gleixner, G., and Claus, P.: Change of
methane production pathway with sediment depth in a lake on the Tibetan
plateau, Palaeogeogr. Palaeocl., 474, 279–286, 2017.
Lotter, A.: The effect of eutrophication on diatom diversity: examples from
six Swiss lakes, Lubrecht & Cramer Ltd, ISBN-10 390414426X, 2001.
Lotter, A. F.: The recent eutrophication of Baldeggersee (Switzerland) as
assessed by fossil diatom assemblages, Holocene, 8, 395–405, 1998.
Lovley, D. R. and Goodwin, S.: Hydrogen Concentrations as an Indicator of
the Predominant Terminal Electron-Accepting Reactions in Aquatic Sediments,
Geochim. Cosmochim. Ac., 52, 2993–3003, 1988.
Lovley, D. R. and Phillips, E. J. P.: Rapid Assay for Microbially Reducible
Ferric Iron in Aquatic Sediments, Appl. Environ. Microb., 53, 1536–1540, 1987.
Maerki, M., Muller, B., Dinkel, C., and Wehrli, B.: Mineralization pathways
in lake sediments with different oxygen and organic carbon supply, Limnol.
Oceanogr., 54, 428–438, 2009.
Maerki, M., Wehrli, B., Dinkel, C., and Muller, B.: The influence of
tortuosity on molecular diffusion in freshwater sediments of high porosity,
Geochim. Cosmochim. Ac., 68, 1519–1528, 2004.
McGlathery, K. J.: Macroalgal blooms contribute to the decline of seagrass
in nutrient-enriched coastal waters, J. Phycol., 37, 453–456, 2001.
Meals, D. W., Dressing, S. A., and Davenport, T. E.: Lag Time in Water
Quality Response to Best Management Practices: A Review, J. Environ. Qual., 39,
85–96, 2010.
Mendonca, R., Muller, R. A., Clow, D., Verpoorter, C., Raymond, P., Tranvik,
L. J., and Sobek, S.: Organic carbon burial in global lakes and reservoirs,
Nat. Commun., 8, 1694, https://doi.org/10.1038/s41467-017-01789-6, 2017.
Meysman, F. J. R., Middelburg, J. J., and Heip, C. H. R.: Bioturbation: a
fresh look at Darwin's last idea, Trends Ecol. Evol., 21, 688–695, 2006.
Middelburg, J. J.: Reviews and syntheses: to the bottom of carbon processing at the seafloor, Biogeosciences, 15, 413–427, https://doi.org/10.5194/bg-15-413-2018, 2018.
Moosmann, L., Gachter, R., Muller, B., and Wuest, A.: Is phosphorus
retention in autochthonous lake sediments controlled by oxygen or
phosphorus?, Limnol. Oceanogr., 51, 763–771, 2006.
Müller, G., Ehwald, F., and Hamann, A.: Langzeituntersuchungen über
das Verhalten von Phosphor, Stickstoff und Bor bei der
mechanisch-biologischen Abwasserreinigung am Beispiel der kommunalen
Kläranlagen Bammental und Wiesloch (Rhein-Neckar-Kreis), Univ.
Heidelberg, Heidelberg, 1990.
Naeher, S., Gilli, A., North, R. P., Hamann, Y., and Schubert, C. J.:
Tracing bottom water oxygenation with sedimentary Mn∕Fe ratios in Lake
Zurich, Switzerland, Chem. Geol., 352, 125–133, 2013.
Nedwell, D. B.: The Input and Mineralization of Organic-Carbon in Anaerobic
Aquatic Sediments, Adv. Microb. Ecol., 7, 93–131, 1984.
Oda, Y., Larimer, F. W., Chain, P. S. G., Malfatti, S., Shin, M. V., Vergez,
L. M., Hauser, L., Land, M. L., Braatsch, S., Beatty, J. T., Pelletier, D.
A., Schaefer, A. L., and Harwood, C. S.: Multiple genome sequences reveal
adaptations of a phototrophic bacterium to sediment microenvironments, P.
Natl. Acad. Sci. USA, 105, 18543–18548, 2008.
Oremland, R. S. and Polcin, S.: Methanogenesis and Sulfate Reduction –
Competitive and Noncompetitive Substrates in Estuarine Sediments, Appl.
Environ. Microb., 44, 1270–1276, 1982.
Pritchard, P. H. and Bourquin, A. W.: The Use of Microcosms for Evaluation
of Interactions between Pollutants and Microorganisms, Adv. Microb. Ecol., 7,
133–215, 1984.
Raymond, P. A., Hartmann, J., Lauerwald, R., Sobek, S., McDonald, C.,
Hoover, M., Butman, D., Striegl, R., Mayorga, E., Humborg, C., Kortelainen,
P., Durr, H., Meybeck, M., Ciais, P., and Guth, P.: Global carbon dioxide
emissions from inland waters, Nature, 503, 355–359, 2013.
Rippey, B. and Anderson, N. J.: Reconstruction of lake phosphorus loading
and dynamics using the sedimentary record, Environ. Sci. Technol., 30,
1786–1788, 1996.
Sander, M., Hofstetter, T. B., and Gorski, C. A.: Electrochemical Analyses
of Redox-Active Iron Minerals: A Review of Nonmediated and Mediated
Approaches, Environ. Sci. Technol., 49, 5862–5878, 2015.
Schaller, T. and Wehrli, B.: Geochemical-Focusing of Manganese in Lake
Sediments – An Indicator of Deep-Water Oxygen Conditions, Aquat. Geochem., 2,
359–378, 1996.
Schindler, D. W.: Recent advances in the understanding and management of
eutrophication, Limnol. Oceanogr., 51, 356–363, 2006.
Schink, B.: Energetics of syntrophic cooperation in methanogenic
degradation, Microbiol. Mol. Biol. R., 61, 262–280, 1997.
Schwarz, J. I. K., Eckert, W., and Conrad, R.: Community structure of
Archaea and Bacteria in a profundal lake sediment Lake Kinneret (Israel),
Syst. Appl. Microbiol., 30, 239–254, 2007.
Sobek, S., Durisch-Kaiser, E., Zurbrugg, R., Wongfun, N., Wessels, M.,
Pasche, N., and Wehrli, B.: Organic carbon burial efficiency in lake
sediments controlled by oxygen exposure time and sediment source, Limnol.
Oceanogr., 54, 2243–2254, 2009.
Stadelmann, P. and Escher, M.: 20 Jahre Sanierung und Ueberwachung des
Baldeggersees, Naturforschende Gesellschaft, Luzern, 2002.
Steinsberger, T., Schmid, M., Wüest, A., Schwefel, R., Wehrli, B., and Müller, B.:
Organic carbon mass accumulation rate regulates the flux of reduced substances
from the sediments of deep lakes, Biogeosciences, 14, 3275–3285,
https://doi.org/10.5194/bg-14-3275-2017, 2017.
Stookey, L. L.: Ferrozine – a New Spectrophotometric Reagent for Iron, Anal.
Chem., 42, 779–781, 1970.
Teranes, J. L. and Bernasconi, S. M.: The record of nitrate utilization and
productivity limitation provided by delta N-15 values in lake organic matter
– A study of sediment trap and core sediments from Baldeggersee,
Switzerland, Limnol. Oceanogr., 45, 801–813, 2000.
Teranes, J. L., McKenzie, J. A., Bernasconi, S. M., Lotter, A. F., and
Sturm, M.: A study of oxygen isotopic fractionation during bio-induced
calcite precipitation in eutrophic Baldeggersee, Switzerland, Geochim.
Cosmochim. Ac., 63, 1981–1989, 1999a.
Teranes, J. L., McKenzie, J. A., and Lotter, A. F.: Stable isotope response
to lake eutrophication: Calibration of a high-resolution lacustrine sequence
from Baldeggersee, Switzerland, Limnol. Oceanogr., 44, 320–333, 1999b.
Valiela, I., McClelland, J., Hauxwell, J., Behr, P. J., Hersh, D., and
Foreman, K.: Macroalgal blooms in shallow estuaries: Controls and
ecophysiological and ecosystem consequences, Limnol. Oceanogr., 42, 1105–1118,
1997.
Werne, J. P., Hollander, D. J., Behrens, A., Schaeffer, P., Albrecht, P.,
and Damste, J. S. S.: Timing of early diagenetic sulfurization of organic
matter: A precursor-product relationship in Holocene sediments of the anoxic
Cariaco Basin, Venezuela, Geochim. Cosmochim. Ac., 64, 1741–1751, 2000.
Werne, J. P., Lyons, T. W., Hollander, D. J., Schouten, S., Hopmans, E. C.,
and Damste, J. S. S.: Investigating pathways of diagenetic organic matter
sulfurization using compound-specific sulfur isotope analysis, Geochim.
Cosmochim. Ac., 72, 3489–3502, 2008.
Witherspoon, P. A. and Saraf, D. N.: Diffusion of Methane Ethane Propane and
N-Butane in Water from 25 to 43 Degrees, J. Phys. Chem.-US, 69, 3752–3755, 1965.
Xiao, K. Q., Beulig, F., Kjeldsen, K. U., Jorgensen, B. B., and
Risgaard-Petersen, N.: Concurrent Methane Production and Oxidation in
Surface Sediment from Aarhus Bay, Denmark, Front Microbiol., 8, 1198, 2017.
Zeebe, R. E.: On the molecular diffusion coefficients of dissolved CO2,
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