Articles | Volume 22, issue 8
https://doi.org/10.5194/bg-22-2049-2025
© Author(s) 2025. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-22-2049-2025
© Author(s) 2025. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
25 Apr 2025
Research article |
| 25 Apr 2025
| 25 Apr 2025
Detection of fast-changing intra-seasonal vegetation dynamics of drylands using solar-induced chlorophyll fluorescence (SIF)
School of Integrative Plant Science, Soil and Crop Sciences Section, Cornell University, Ithaca, NY, USA
Department of Global Ecology, Carnegie Institution for Science, Stanford, CA, USA
Giulia Tagliabue
Remote Sensing of Environmental Dynamics Laboratory, Department of Environmental and Earth Sciences (DISAT), University of Milano-Bicocca, Milan, Italy
Micol Rossini
Remote Sensing of Environmental Dynamics Laboratory, Department of Environmental and Earth Sciences (DISAT), University of Milano-Bicocca, Milan, Italy
Francesco Pietro Fava
Department of Environmental Science and Policy, Università degli Studi di Milano, Milan, Italy
Cinzia Panigada
Remote Sensing of Environmental Dynamics Laboratory, Department of Environmental and Earth Sciences (DISAT), University of Milano-Bicocca, Milan, Italy
Lutz Merbold
Integrative Agroecology Group, Research Division Agroecology and Environment, Agroscope, Reckenholzstr. 191, 8046 Zurich, Switzerland
Sonja Leitner
International Livestock Research Institute, Mazingira Centre, P.O. Box 30709, 00100 Nairobi, Kenya
Ying Sun
CORRESPONDING AUTHOR
School of Integrative Plant Science, Soil and Crop Sciences Section, Cornell University, Ithaca, NY, USA
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Haodi Xu, Joshua Fan, Feng Tao, Lifen Jiang, Fengqi You, Benjamin Z. Houlton, Ying Sun, Carla P. Gomes, and Yiqi Luo
EGUsphere, https://doi.org/https://doi.org/10.48550/arXiv.2502.00672, https://doi.org/https://doi.org/10.48550/arXiv.2502.00672, 2025
This preprint is open for discussion and under review for Geoscientific Model Development (GMD).
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We developed the Biogeochemistry-Informed Neural Network (BINN) which embeds a process-based model inside an AI framework so the model’s parameters can be learned from big data. BINN recovered known parameters in synthetic tests and revealed key controls when applied to about 25 000 soil profiles across the contiguous US. It operates more than 50 times faster than Bayesian approaches while reproducing similar key processes governing SOC stocks.
Beatriz P. Cazorla, Ana Meijide, Javier Cabello, Julio Peñas, Rodrigo Vargas, Javier Martínez-López, Leonardo Montagnani, Alexander Knohl, Lukas Siebicke, Benimiano Gioli, Jiří Dušek, Ladislav Šigut, Andreas Ibrom, Georg Wohlfahrt, Eugénie Paul-Limoges, Kathrin Fuchs, Antonio Manco, Marian Pavelka, Lutz Merbold, Lukas Hörtnagl, Pierpaolo Duce, Ignacio Goded, Kim Pilegaard, and Domingo Alcaraz-Segura
EGUsphere, https://doi.org/10.5194/egusphere-2025-2835, https://doi.org/10.5194/egusphere-2025-2835, 2025
This preprint is open for discussion and under review for Biogeosciences (BG).
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We assess whether satellite-derived Ecosystem Functional Types (EFTs) reflect spatial heterogeneity in carbon fluxes across Europe. Using Eddy Covariance data from 50 sites, we show that EFTs capture distinct Net Ecosystem Exchange dynamics and perform slightly better than PFTs. EFTs offer a scalable, annually updatable approach to monitor ecosystem functioning and its interannual variability.
Alouette van Hove, Kristoffer Aalstad, Vibeke Lind, Claudia Arndt, Vincent Odongo, Rodolfo Ceriani, Francesco Fava, John Hulth, and Norbert Pirk
EGUsphere, https://doi.org/10.5194/egusphere-2024-3994, https://doi.org/10.5194/egusphere-2024-3994, 2025
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Research on methane emissions from African livestock is limited. We used a probabilistic method fusing drone and flux tower observations with an atmospheric model to estimate emissions from various herds. This approach proved robust under non-stationary wind conditions and effective in estimating emissions as low as 100 g h-1. We also detected herd locations using spectral anomalies in satellite data. Our approach can be used to estimate diverse sources, thereby improving emission inventories.
Gerardo E. Soto, Steven W. Wilcox, Patrick E. Clark, Francesco P. Fava, Nathaniel D. Jensen, Njoki Kahiu, Chuan Liao, Benjamin Porter, Ying Sun, and Christopher B. Barrett
Earth Syst. Sci. Data, 16, 5375–5404, https://doi.org/10.5194/essd-16-5375-2024, https://doi.org/10.5194/essd-16-5375-2024, 2024
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This paper uses machine learning and linear unmixing to produce rangeland health indicators: Landsat time series of land cover classes and vegetation fractional cover of photosynthetic vegetation, non-photosynthetic vegetation, and bare ground in arid and semi-arid Kenya, Ethiopia, and Somalia. This represents the first multi-decadal Landsat-resolution dataset specifically designed for mapping and monitoring rangeland health in the arid and semi-arid rangelands of this portion of eastern Africa.
Elodie Salmon, Fabrice Jégou, Bertrand Guenet, Line Jourdain, Chunjing Qiu, Vladislav Bastrikov, Christophe Guimbaud, Dan Zhu, Philippe Ciais, Philippe Peylin, Sébastien Gogo, Fatima Laggoun-Défarge, Mika Aurela, M. Syndonia Bret-Harte, Jiquan Chen, Bogdan H. Chojnicki, Housen Chu, Colin W. Edgar, Eugenie S. Euskirchen, Lawrence B. Flanagan, Krzysztof Fortuniak, David Holl, Janina Klatt, Olaf Kolle, Natalia Kowalska, Lars Kutzbach, Annalea Lohila, Lutz Merbold, Włodzimierz Pawlak, Torsten Sachs, and Klaudia Ziemblińska
Geosci. Model Dev., 15, 2813–2838, https://doi.org/10.5194/gmd-15-2813-2022, https://doi.org/10.5194/gmd-15-2813-2022, 2022
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A methane model that features methane production and transport by plants, the ebullition process and diffusion in soil, oxidation to CO2, and CH4 fluxes to the atmosphere has been embedded in the ORCHIDEE-PEAT land surface model, which includes an explicit representation of northern peatlands. This model, ORCHIDEE-PCH4, was calibrated and evaluated on 14 peatland sites. Results show that the model is sensitive to temperature and substrate availability over the top 75 cm of soil depth.
Russell Doughty, Thomas P. Kurosu, Nicholas Parazoo, Philipp Köhler, Yujie Wang, Ying Sun, and Christian Frankenberg
Earth Syst. Sci. Data, 14, 1513–1529, https://doi.org/10.5194/essd-14-1513-2022, https://doi.org/10.5194/essd-14-1513-2022, 2022
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We describe and compare solar-induced chlorophyll fluorescence data produced by NASA from the Greenhouse Gases Observing Satellite (GOSAT) and the Orbiting Carbon Observatory-2 (OCO-2) and OCO-3 platforms.
Anna-Maria Virkkala, Susan M. Natali, Brendan M. Rogers, Jennifer D. Watts, Kathleen Savage, Sara June Connon, Marguerite Mauritz, Edward A. G. Schuur, Darcy Peter, Christina Minions, Julia Nojeim, Roisin Commane, Craig A. Emmerton, Mathias Goeckede, Manuel Helbig, David Holl, Hiroki Iwata, Hideki Kobayashi, Pasi Kolari, Efrén López-Blanco, Maija E. Marushchak, Mikhail Mastepanov, Lutz Merbold, Frans-Jan W. Parmentier, Matthias Peichl, Torsten Sachs, Oliver Sonnentag, Masahito Ueyama, Carolina Voigt, Mika Aurela, Julia Boike, Gerardo Celis, Namyi Chae, Torben R. Christensen, M. Syndonia Bret-Harte, Sigrid Dengel, Han Dolman, Colin W. Edgar, Bo Elberling, Eugenie Euskirchen, Achim Grelle, Juha Hatakka, Elyn Humphreys, Järvi Järveoja, Ayumi Kotani, Lars Kutzbach, Tuomas Laurila, Annalea Lohila, Ivan Mammarella, Yojiro Matsuura, Gesa Meyer, Mats B. Nilsson, Steven F. Oberbauer, Sang-Jong Park, Roman Petrov, Anatoly S. Prokushkin, Christopher Schulze, Vincent L. St. Louis, Eeva-Stiina Tuittila, Juha-Pekka Tuovinen, William Quinton, Andrej Varlagin, Donatella Zona, and Viacheslav I. Zyryanov
Earth Syst. Sci. Data, 14, 179–208, https://doi.org/10.5194/essd-14-179-2022, https://doi.org/10.5194/essd-14-179-2022, 2022
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The effects of climate warming on carbon cycling across the Arctic–boreal zone (ABZ) remain poorly understood due to the relatively limited distribution of ABZ flux sites. Fortunately, this flux network is constantly increasing, but new measurements are published in various platforms, making it challenging to understand the ABZ carbon cycle as a whole. Here, we compiled a new database of Arctic–boreal CO2 fluxes to help facilitate large-scale assessments of the ABZ carbon cycle.
Yang Liu, Simon Schallhart, Ditte Taipale, Toni Tykkä, Matti Räsänen, Lutz Merbold, Heidi Hellén, and Petri Pellikka
Atmos. Chem. Phys., 21, 14761–14787, https://doi.org/10.5194/acp-21-14761-2021, https://doi.org/10.5194/acp-21-14761-2021, 2021
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We studied the mixing ratio of biogenic volatile organic compounds (BVOCs) in a humid highland and dry lowland African ecosystem in Kenya. The mixing ratio of monoterpenoids was similar to that measured in the relevant ecosystems in western and southern Africa, while that of isoprene was lower. Modeling the emission factors (EFs) for BVOCs from the lowlands, the EFs for isoprene and β-pinene agreed well with what is assumed in the MEGAN, while those of α-pinene and limonene were higher.
Kyle B. Delwiche, Sara Helen Knox, Avni Malhotra, Etienne Fluet-Chouinard, Gavin McNicol, Sarah Feron, Zutao Ouyang, Dario Papale, Carlo Trotta, Eleonora Canfora, You-Wei Cheah, Danielle Christianson, Ma. Carmelita R. Alberto, Pavel Alekseychik, Mika Aurela, Dennis Baldocchi, Sheel Bansal, David P. Billesbach, Gil Bohrer, Rosvel Bracho, Nina Buchmann, David I. Campbell, Gerardo Celis, Jiquan Chen, Weinan Chen, Housen Chu, Higo J. Dalmagro, Sigrid Dengel, Ankur R. Desai, Matteo Detto, Han Dolman, Elke Eichelmann, Eugenie Euskirchen, Daniela Famulari, Kathrin Fuchs, Mathias Goeckede, Sébastien Gogo, Mangaliso J. Gondwe, Jordan P. Goodrich, Pia Gottschalk, Scott L. Graham, Martin Heimann, Manuel Helbig, Carole Helfter, Kyle S. Hemes, Takashi Hirano, David Hollinger, Lukas Hörtnagl, Hiroki Iwata, Adrien Jacotot, Gerald Jurasinski, Minseok Kang, Kuno Kasak, John King, Janina Klatt, Franziska Koebsch, Ken W. Krauss, Derrick Y. F. Lai, Annalea Lohila, Ivan Mammarella, Luca Belelli Marchesini, Giovanni Manca, Jaclyn Hatala Matthes, Trofim Maximov, Lutz Merbold, Bhaskar Mitra, Timothy H. Morin, Eiko Nemitz, Mats B. Nilsson, Shuli Niu, Walter C. Oechel, Patricia Y. Oikawa, Keisuke Ono, Matthias Peichl, Olli Peltola, Michele L. Reba, Andrew D. Richardson, William Riley, Benjamin R. K. Runkle, Youngryel Ryu, Torsten Sachs, Ayaka Sakabe, Camilo Rey Sanchez, Edward A. Schuur, Karina V. R. Schäfer, Oliver Sonnentag, Jed P. Sparks, Ellen Stuart-Haëntjens, Cove Sturtevant, Ryan C. Sullivan, Daphne J. Szutu, Jonathan E. Thom, Margaret S. Torn, Eeva-Stiina Tuittila, Jessica Turner, Masahito Ueyama, Alex C. Valach, Rodrigo Vargas, Andrej Varlagin, Alma Vazquez-Lule, Joseph G. Verfaillie, Timo Vesala, George L. Vourlitis, Eric J. Ward, Christian Wille, Georg Wohlfahrt, Guan Xhuan Wong, Zhen Zhang, Donatella Zona, Lisamarie Windham-Myers, Benjamin Poulter, and Robert B. Jackson
Earth Syst. Sci. Data, 13, 3607–3689, https://doi.org/10.5194/essd-13-3607-2021, https://doi.org/10.5194/essd-13-3607-2021, 2021
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Methane is an important greenhouse gas, yet we lack knowledge about its global emissions and drivers. We present FLUXNET-CH4, a new global collection of methane measurements and a critical resource for the research community. We use FLUXNET-CH4 data to quantify the seasonality of methane emissions from freshwater wetlands, finding that methane seasonality varies strongly with latitude. Our new database and analysis will improve wetland model accuracy and inform greenhouse gas budgets.
Anna B. Harper, Karina E. Williams, Patrick C. McGuire, Maria Carolina Duran Rojas, Debbie Hemming, Anne Verhoef, Chris Huntingford, Lucy Rowland, Toby Marthews, Cleiton Breder Eller, Camilla Mathison, Rodolfo L. B. Nobrega, Nicola Gedney, Pier Luigi Vidale, Fred Otu-Larbi, Divya Pandey, Sebastien Garrigues, Azin Wright, Darren Slevin, Martin G. De Kauwe, Eleanor Blyth, Jonas Ardö, Andrew Black, Damien Bonal, Nina Buchmann, Benoit Burban, Kathrin Fuchs, Agnès de Grandcourt, Ivan Mammarella, Lutz Merbold, Leonardo Montagnani, Yann Nouvellon, Natalia Restrepo-Coupe, and Georg Wohlfahrt
Geosci. Model Dev., 14, 3269–3294, https://doi.org/10.5194/gmd-14-3269-2021, https://doi.org/10.5194/gmd-14-3269-2021, 2021
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We evaluated 10 representations of soil moisture stress in the JULES land surface model against site observations of GPP and latent heat flux. Increasing the soil depth and plant access to deep soil moisture improved many aspects of the simulations, and we recommend these settings in future work using JULES. In addition, using soil matric potential presents the opportunity to include parameters specific to plant functional type to further improve modeled fluxes.
Lutz Merbold, Charlotte Decock, Werner Eugster, Kathrin Fuchs, Benjamin Wolf, Nina Buchmann, and Lukas Hörtnagl
Biogeosciences, 18, 1481–1498, https://doi.org/10.5194/bg-18-1481-2021, https://doi.org/10.5194/bg-18-1481-2021, 2021
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Our study investigated the exchange of the three major greenhouse gases (GHGs) over a temperate grassland prior to and after restoration through tillage in central Switzerland. Our results show that irregular management events, such as tillage, have considerable effects on GHG emissions in the year of tillage while leading to enhanced carbon uptake and similar nitrogen losses via nitrous oxide in the years following tillage to those observed prior to tillage.
Sheila Wachiye, Lutz Merbold, Timo Vesala, Janne Rinne, Matti Räsänen, Sonja Leitner, and Petri Pellikka
Biogeosciences, 17, 2149–2167, https://doi.org/10.5194/bg-17-2149-2020, https://doi.org/10.5194/bg-17-2149-2020, 2020
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Limited data on emissions in Africa translate into uncertainty during GHG budgeting. We studied annual CO2, N2O, and CH4 emissions in four land-use types in Kenyan savanna using static chambers and gas chromatography. CO2 emissions varied between seasons and land-use types. Soil moisture and vegetation explained the seasonal variation, while soil temperature was insignificant. N2O and CH4 emissions did not vary at all sites. Our results are useful in climate change mitigation interventions.
Biagio Di Mauro, Roberto Garzonio, Micol Rossini, Gianluca Filippa, Paolo Pogliotti, Marta Galvagno, Umberto Morra di Cella, Mirco Migliavacca, Giovanni Baccolo, Massimiliano Clemenza, Barbara Delmonte, Valter Maggi, Marie Dumont, François Tuzet, Matthieu Lafaysse, Samuel Morin, Edoardo Cremonese, and Roberto Colombo
The Cryosphere, 13, 1147–1165, https://doi.org/10.5194/tc-13-1147-2019, https://doi.org/10.5194/tc-13-1147-2019, 2019
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The snow albedo reduction due to dust from arid regions alters the melting dynamics of the snowpack, resulting in earlier snowmelt. We estimate up to 38 days of anticipated snow disappearance for a season that was characterized by a strong dust deposition event. This process has a series of further impacts. For example, earlier snowmelts may alter the hydrological cycle in the Alps, induce higher sensitivity to late summer drought, and finally impact vegetation and animal phenology.
Debsunder Dutta, David S. Schimel, Ying Sun, Christiaan van der Tol, and Christian Frankenberg
Biogeosciences, 16, 77–103, https://doi.org/10.5194/bg-16-77-2019, https://doi.org/10.5194/bg-16-77-2019, 2019
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Canopy structural and leaf photosynthesis parameterizations are often fixed over time in Earth system models and represent large sources of uncertainty in predictions of carbon and water fluxes. We develop a moving window nonlinear optimal parameter inversion framework using constraining flux and satellite reflectance observations. The results demonstrate the applicability of the approach for error reduction and capturing the seasonal variability of key ecosystem parameters.
Kathrin Fuchs, Lukas Hörtnagl, Nina Buchmann, Werner Eugster, Val Snow, and Lutz Merbold
Biogeosciences, 15, 5519–5543, https://doi.org/10.5194/bg-15-5519-2018, https://doi.org/10.5194/bg-15-5519-2018, 2018
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Replacing fertiliser nitrogen with biologically fixed nitrogen (BFN) through legumes has been suggested as a strategy for nitrous oxide (N2O) mitigation from intensively managed grasslands. On our site the mitigation strategy reduced N2O emissions by 54 % and 39 % in 2015 and 2016, while annual yields were similar under mitigation management. We conclude that N2O emissions can be effectively reduced without losses in yield by increasing the clover proportion and reducing fertilisation.
Jannis von Buttlar, Jakob Zscheischler, Anja Rammig, Sebastian Sippel, Markus Reichstein, Alexander Knohl, Martin Jung, Olaf Menzer, M. Altaf Arain, Nina Buchmann, Alessandro Cescatti, Damiano Gianelle, Gerard Kiely, Beverly E. Law, Vincenzo Magliulo, Hank Margolis, Harry McCaughey, Lutz Merbold, Mirco Migliavacca, Leonardo Montagnani, Walter Oechel, Marian Pavelka, Matthias Peichl, Serge Rambal, Antonio Raschi, Russell L. Scott, Francesco P. Vaccari, Eva van Gorsel, Andrej Varlagin, Georg Wohlfahrt, and Miguel D. Mahecha
Biogeosciences, 15, 1293–1318, https://doi.org/10.5194/bg-15-1293-2018, https://doi.org/10.5194/bg-15-1293-2018, 2018
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Our work systematically quantifies extreme heat and drought event impacts on gross primary productivity (GPP) and ecosystem respiration globally across a wide range of ecosystems. We show that heat extremes typically increased mainly respiration whereas drought decreased both fluxes. Combined heat and drought extremes had opposing effects offsetting each other for respiration, but there were also strong reductions in GPP and hence the strongest reductions in the ecosystems carbon sink capacity.
Chunjing Qiu, Dan Zhu, Philippe Ciais, Bertrand Guenet, Gerhard Krinner, Shushi Peng, Mika Aurela, Christian Bernhofer, Christian Brümmer, Syndonia Bret-Harte, Housen Chu, Jiquan Chen, Ankur R. Desai, Jiří Dušek, Eugénie S. Euskirchen, Krzysztof Fortuniak, Lawrence B. Flanagan, Thomas Friborg, Mateusz Grygoruk, Sébastien Gogo, Thomas Grünwald, Birger U. Hansen, David Holl, Elyn Humphreys, Miriam Hurkuck, Gerard Kiely, Janina Klatt, Lars Kutzbach, Chloé Largeron, Fatima Laggoun-Défarge, Magnus Lund, Peter M. Lafleur, Xuefei Li, Ivan Mammarella, Lutz Merbold, Mats B. Nilsson, Janusz Olejnik, Mikaell Ottosson-Löfvenius, Walter Oechel, Frans-Jan W. Parmentier, Matthias Peichl, Norbert Pirk, Olli Peltola, Włodzimierz Pawlak, Daniel Rasse, Janne Rinne, Gaius Shaver, Hans Peter Schmid, Matteo Sottocornola, Rainer Steinbrecher, Torsten Sachs, Marek Urbaniak, Donatella Zona, and Klaudia Ziemblinska
Geosci. Model Dev., 11, 497–519, https://doi.org/10.5194/gmd-11-497-2018, https://doi.org/10.5194/gmd-11-497-2018, 2018
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Northern peatlands store large amount of soil carbon and are vulnerable to climate change. We implemented peatland hydrological and carbon accumulation processes into the ORCHIDEE land surface model. The model was evaluated against EC measurements from 30 northern peatland sites. The model generally well reproduced the spatial gradient and temporal variations in GPP and NEE at these sites. Water table depth was not well predicted but had only small influence on simulated NEE.
Biagio Di Mauro, Giovanni Baccolo, Roberto Garzonio, Claudia Giardino, Dario Massabò, Andrea Piazzalunga, Micol Rossini, and Roberto Colombo
The Cryosphere, 11, 2393–2409, https://doi.org/10.5194/tc-11-2393-2017, https://doi.org/10.5194/tc-11-2393-2017, 2017
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In the paper, we demonstrate the potential of field and satellite hyperspectral reflectance data in characterizing the spatial distribution of impurities on the Morteratsch Glacier. In situ reflectance spectra showed that impurities reduced ice reflectance in visible wavelengths by 80–90 %. Satellite data also showed the outcropping of dust during the melting season in the upper parts of the glacier. Laboratory measurements of cryoconite showed the presence of elemental and organic carbon.
Fanny Kittler, Ina Burjack, Chiara A. R. Corradi, Martin Heimann, Olaf Kolle, Lutz Merbold, Nikita Zimov, Sergey Zimov, and Mathias Göckede
Biogeosciences, 13, 5315–5332, https://doi.org/10.5194/bg-13-5315-2016, https://doi.org/10.5194/bg-13-5315-2016, 2016
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We compared growing season CO2 fluxes of a wet tussock tundra ecosystem from an area affected by decadal drainage and an undisturbed area on the Kolyma floodplain in northeastern Siberia. The results show systematically reduced CO2 uptake within the drained area, caused by increased respiration, and that the local permafrost ecosystem is capable of adapting to significantly different hydrologic conditions without losing its capacity to act as a net sink for CO2.
Gianluca Tramontana, Martin Jung, Christopher R. Schwalm, Kazuhito Ichii, Gustau Camps-Valls, Botond Ráduly, Markus Reichstein, M. Altaf Arain, Alessandro Cescatti, Gerard Kiely, Lutz Merbold, Penelope Serrano-Ortiz, Sven Sickert, Sebastian Wolf, and Dario Papale
Biogeosciences, 13, 4291–4313, https://doi.org/10.5194/bg-13-4291-2016, https://doi.org/10.5194/bg-13-4291-2016, 2016
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We have evaluated 11 machine learning (ML) methods and two complementary drivers' setup to estimate the carbon dioxide (CO2) and energy exchanges between land ecosystems and atmosphere. Obtained results have shown high consistency among ML and high capability to estimate the spatial and seasonal variability of the target fluxes. The results were good for all the ecosystems, with limitations to the ones in the extreme environments (cold, hot) or less represented in the training data (tropics).
O. Perez-Priego, J. Guan, M. Rossini, F. Fava, T. Wutzler, G. Moreno, N. Carvalhais, A. Carrara, O. Kolle, T. Julitta, M. Schrumpf, M. Reichstein, and M. Migliavacca
Biogeosciences, 12, 6351–6367, https://doi.org/10.5194/bg-12-6351-2015, https://doi.org/10.5194/bg-12-6351-2015, 2015
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Sun-induced chlorophyll fluorescence and photochemical reflectance index revealed controls of climate and nutrient availability on photosynthesis (gross primary production, GPP). Meteo-driven models (MMs) were unable to describe nutrient-induced effects on GPP. Important implications can be derived from these results, and uncertainties in the prediction of global GPP still remain when MMs do not account for plant nutrient availability.
A. Porcar-Castell, A. Mac Arthur, M. Rossini, L. Eklundh, J. Pacheco-Labrador, K. Anderson, M. Balzarolo, M. P. Martín, H. Jin, E. Tomelleri, S. Cerasoli, K. Sakowska, A. Hueni, T. Julitta, C. J. Nichol, and L. Vescovo
Biogeosciences, 12, 6103–6124, https://doi.org/10.5194/bg-12-6103-2015, https://doi.org/10.5194/bg-12-6103-2015, 2015
B. Wolf, L. Merbold, C. Decock, B. Tuzson, E. Harris, J. Six, L. Emmenegger, and J. Mohn
Biogeosciences, 12, 2517–2531, https://doi.org/10.5194/bg-12-2517-2015, https://doi.org/10.5194/bg-12-2517-2015, 2015
W. Eugster and L. Merbold
SOIL, 1, 187–205, https://doi.org/10.5194/soil-1-187-2015, https://doi.org/10.5194/soil-1-187-2015, 2015
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The eddy covariance (EC) method has become increasingly popular in soil science. The basic concept of this method and its use in different types of experimental designs in the field are given, and we indicate where progress in advancing and extending the field of applications is made. The greatest strengths of EC measurements in soil science are (1) their uninterrupted continuous measurement of gas concentrations and fluxes and (2) spatial integration over
small-scale heterogeneity in the soil.
R. V. Hiller, D. Bretscher, T. DelSontro, T. Diem, W. Eugster, R. Henneberger, S. Hobi, E. Hodson, D. Imer, M. Kreuzer, T. Künzle, L. Merbold, P. A. Niklaus, B. Rihm, A. Schellenberger, M. H. Schroth, C. J. Schubert, H. Siegrist, J. Stieger, N. Buchmann, and D. Brunner
Biogeosciences, 11, 1941–1959, https://doi.org/10.5194/bg-11-1941-2014, https://doi.org/10.5194/bg-11-1941-2014, 2014
W. Yuan, S. Liu, W. Cai, W. Dong, J. Chen, A. Arain, P. D. Blanken, A. Cescatti, G. Wohlfahrt, T. Georgiadis, L. Genesio, D. Gianelle, A. Grelle, G. Kiely, A. Knohl, D. Liu, M. Marek, L. Merbold, L. Montagnani, O. Panferov, M. Peltoniemi, S. Rambal, A. Raschi, A. Varlagin, and J. Xia
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmdd-6-5475-2013, https://doi.org/10.5194/gmdd-6-5475-2013, 2013
Revised manuscript not accepted
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Jingwen Ni, Jin Chen, Yao Tang, Jingyi Xu, Jiahui Xu, Linxin Dong, Qingyu Gu, Bailang Yu, Jianping Wu, and Yan Huang
Biogeosciences, 22, 2637–2651, https://doi.org/10.5194/bg-22-2637-2025, https://doi.org/10.5194/bg-22-2637-2025, 2025
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The effect of snowmelt on vegetation is not immediate but has a mean response lag of 38.5 d. As precipitation and snowmelt increase, the response time shortens. More complex than these factors, temperature shortens the response time in colder regions while lengthening it in warmer areas. Furthermore, vegetation in arid regions is more dependent on water than heat, and low-vegetation areas rely more on sub-snow habitats than external climatic factors.
Joanna L. Corimanya, Daniel Jiménez-García, Xingong Li, and A. Townsend Peterson
EGUsphere, https://doi.org/10.5194/egusphere-2025-1203, https://doi.org/10.5194/egusphere-2025-1203, 2025
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Treelines—the highest elevations where trees can grow—are shifting upward as the climate warms. Using nearly 40 years of satellite imagery, we analyzed treeline movement across 115 high mountain peaks from Canada to Central America. We found that treeline shifts are not uniform and are most pronounced in tropical regions, where few studies have been conducted. These results highlight the need for more research in these areas to better understand how climate change reshapes mountain ecosystems.
Louis Delval, Jordan Bates, François Jonard, and Mathieu Javaux
Biogeosciences, 22, 513–534, https://doi.org/10.5194/bg-22-513-2025, https://doi.org/10.5194/bg-22-513-2025, 2025
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The accurate quantification of grapevine water status is crucial for winemakers as it significantly impacts wine quality. It is acknowledged that within a single vineyard, the variability of grapevine water status can be significant. The within-field spatial distribution of soil hydraulic conductance and weather conditions are the primary factors governing the leaf water potential spatial heterogeneity and extent observed in non-irrigated vineyards, and their effects are concomitant.
Sophie Reinermann, Carolin Boos, Andrea Kaim, Anne Schucknecht, Sarah Asam, Ursula Gessner, Sylvia H. Annuth, Thomas M. Schmitt, Thomas Koellner, and Ralf Kiese
EGUsphere, https://doi.org/10.5194/egusphere-2024-4087, https://doi.org/10.5194/egusphere-2024-4087, 2025
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Grasslands shape the landscape in many parts of the world and serve as the main source of fodder for livestock. There is a lack of comprehensive data on grassland yield, though highly valuable for authorities and research. By applying three approaches to estimate grassland yields, namely a satellite data model, a biogeochemical model and a field measurements approach, we provide annual grassland yield maps for the Ammer region in 2019 and highlight potentials and limitations of the approaches.
Anke Fluhrer, Martin Baur, María Piles, Bagher Bayat, Mehdi Rahmati, David Chaparro, Clémence Dubois, Florian Hellwig, Carsten Montzka, Angelika Kübert, Marlin Mueller, Isabel Augscheller, Francois Jonard, Konstantin Schellenberg, and Thomas Jagdhuber
EGUsphere, https://doi.org/10.5194/egusphere-2024-3386, https://doi.org/10.5194/egusphere-2024-3386, 2024
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This study compares established evapotranspiration products in Central Europe and evaluates their multi-seasonal performance during wet & drought phases between 2017–2020 together with important soil-plant-atmosphere drivers. Results show that SEVIRI, ERA5-land & GLEAM perform best compared to ICOS measurements. During moisture limited drought years, ET is decreasing due to decreasing soil moisture and increasing vapor pressure deficit, while in other years ET is mainly controlled by VPD.
Riccardo Guarino, Daniele Cerra, Renzo Zaia, Alessandro Chiarucci, Pietro Lo Cascio, Duccio Rocchini, Piero Zannini, and Salvatore Pasta
Biogeosciences, 21, 2717–2730, https://doi.org/10.5194/bg-21-2717-2024, https://doi.org/10.5194/bg-21-2717-2024, 2024
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The severity and the extent of a large fire event that occurred on the small volcanic island of Stromboli (Aeolian archipelago, Italy) on 25–26 May 2022 were evaluated through remotely sensed data to assess the short-term effect of fire on local plant communities. For the first time, we documented the outstanding after-fire resilience of an invasive alien species, Saccharum biflorum, which is a rhizomatous C4 perennial grass introduced on the island in the nineteenth century.
Surendra Shrestha, Christopher A. Williams, Brendan M. Rogers, John Rogan, and Dominik Kulakowski
Biogeosciences, 21, 2207–2226, https://doi.org/10.5194/bg-21-2207-2024, https://doi.org/10.5194/bg-21-2207-2024, 2024
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Here, we generated chronosequences of leaf area index (LAI) and surface albedo as a function of time since fire to demonstrate the differences in the characteristic trajectories of post-fire biophysical changes among seven forest types and 21 level III ecoregions of the western United States (US) using satellite data from different sources. We also demonstrated how climate played the dominant role in the recovery of LAI and albedo 10 and 20 years after wildfire events in the western US.
Ricardo Martínez Prentice, Miguel Villoslada, Raymond D. Ward, Thaisa F. Bergamo, Chris B. Joyce, and Kalev Sepp
Biogeosciences, 21, 1411–1431, https://doi.org/10.5194/bg-21-1411-2024, https://doi.org/10.5194/bg-21-1411-2024, 2024
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Despite hosting a wide range of ecosystem services, coastal wetlands face threats from global changes. This study models the plant fractional cover of plant communities in Estonian coastal meadows with a synergistic use of drone, satellite imagery and digital elevation models. This approach highlights the significant contribution of digital elevation models to multispectral data, enabling the modelling of heterogeneous plant community distributions in such wetlands.
Hamadou Balde, Gabriel Hmimina, Yves Goulas, Gwendal Latouche, Abderrahmane Ounis, and Kamel Soudani
Biogeosciences, 21, 1259–1276, https://doi.org/10.5194/bg-21-1259-2024, https://doi.org/10.5194/bg-21-1259-2024, 2024
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We show that FyieldLIF was not correlated with SIFy at the diurnal timescale, and the diurnal patterns in SIF and PAR did not match under clear-sky conditions due to canopy structure. Φk was sensitive to canopy structure. RF models show that Φk can be predicted using reflectance in different bands. RF models also show that FyieldLIF was more sensitive to reflectance and radiation than SIF and SIFy, indicating that the combined effect of reflectance bands could hide the SIF physiological trait.
Peng Li, Rong Shang, Jing M. Chen, Mingzhu Xu, Xudong Lin, Guirui Yu, Nianpeng He, and Li Xu
Biogeosciences, 21, 625–639, https://doi.org/10.5194/bg-21-625-2024, https://doi.org/10.5194/bg-21-625-2024, 2024
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The amount of carbon that forests gain from the atmosphere, called net primary productivity (NPP), changes a lot with age. These forest NPP–age relationships could be modeled from field survey data, but we are not sure which model works best. Here we tested five different models using 3121 field survey samples in China, and the semi-empirical mathematical (SEM) function was determined as the optimal. The relationships built by SEM can improve China's forest carbon modeling and prediction.
Lammert Kooistra, Katja Berger, Benjamin Brede, Lukas Valentin Graf, Helge Aasen, Jean-Louis Roujean, Miriam Machwitz, Martin Schlerf, Clement Atzberger, Egor Prikaziuk, Dessislava Ganeva, Enrico Tomelleri, Holly Croft, Pablo Reyes Muñoz, Virginia Garcia Millan, Roshanak Darvishzadeh, Gerbrand Koren, Ittai Herrmann, Offer Rozenstein, Santiago Belda, Miina Rautiainen, Stein Rune Karlsen, Cláudio Figueira Silva, Sofia Cerasoli, Jon Pierre, Emine Tanır Kayıkçı, Andrej Halabuk, Esra Tunc Gormus, Frank Fluit, Zhanzhang Cai, Marlena Kycko, Thomas Udelhoven, and Jochem Verrelst
Biogeosciences, 21, 473–511, https://doi.org/10.5194/bg-21-473-2024, https://doi.org/10.5194/bg-21-473-2024, 2024
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We reviewed optical remote sensing time series (TS) studies for monitoring vegetation productivity across ecosystems. Methods were categorized into trend analysis, land surface phenology, and assimilation into statistical or dynamic vegetation models. Due to progress in machine learning, TS processing methods will diversify, while modelling strategies will advance towards holistic processing. We propose integrating methods into a digital twin to improve the understanding of vegetation dynamics.
Thomas D. Hessilt, Brendan M. Rogers, Rebecca C. Scholten, Stefano Potter, Thomas A. J. Janssen, and Sander Veraverbeke
Biogeosciences, 21, 109–129, https://doi.org/10.5194/bg-21-109-2024, https://doi.org/10.5194/bg-21-109-2024, 2024
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In boreal North America, snow and frozen ground prevail in winter, while fires occur in summer. Over the last 20 years, the northwestern parts have experienced earlier snow disappearance and more ignitions. This is opposite to the southeastern parts. However, earlier ignitions following earlier snow disappearance timing led to larger fires across the region. Snow disappearance timing may be a good proxy for ignition timing and may also influence important atmospheric conditions related to fires.
Regine Anne Faelga, Luigi Cantelli, Sonia Silvestri, and Beatrice Maria Sole Giambastiani
Biogeosciences, 20, 4841–4855, https://doi.org/10.5194/bg-20-4841-2023, https://doi.org/10.5194/bg-20-4841-2023, 2023
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A dune restoration project on the northern Adriatic coast (Ravenna, Italy) was assessed using UAV monitoring. Structure-from-motion photogrammetry, elevation differencing, and statistical analysis were used to quantify dune development in terms of sand volume and vegetation cover change. Results show that the installed fence has been effective as there was significant sand accumulation, embryo dune development, and a decrease in blowout features due to increased vegetation colonization.
Lilian Vallet, Martin Schwartz, Philippe Ciais, Dave van Wees, Aurelien de Truchis, and Florent Mouillot
Biogeosciences, 20, 3803–3825, https://doi.org/10.5194/bg-20-3803-2023, https://doi.org/10.5194/bg-20-3803-2023, 2023
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This study analyzes the ecological impact of the 2022 summer fire season in France by using high-resolution satellite data. The total biomass loss was 2.553 Mt, equivalent to a 17 % increase of the average natural mortality of all French forests. While Mediterranean forests had a lower biomass loss, there was a drastic increase in burned area and biomass loss over the Atlantic pine forests and temperate forests. This result revisits the distinctiveness of the 2022 fire season.
Arthur Bayle, Bradley Z. Carlson, Anaïs Zimmer, Sophie Vallée, Antoine Rabatel, Edoardo Cremonese, Gianluca Filippa, Cédric Dentant, Christophe Randin, Andrea Mainetti, Erwan Roussel, Simon Gascoin, Dov Corenblit, and Philippe Choler
Biogeosciences, 20, 1649–1669, https://doi.org/10.5194/bg-20-1649-2023, https://doi.org/10.5194/bg-20-1649-2023, 2023
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Glacier forefields have long provided ecologists with a model to study patterns of plant succession following glacier retreat. We used remote sensing approaches to study early succession dynamics as it allows to analyze the deglaciation, colonization, and vegetation growth within a single framework. We found that the heterogeneity of early succession dynamics is deterministic and can be explained well by local environmental context. This work has been done by an international consortium.
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Short summary
Solar-induced chlorophyll fluorescence (SIF), a tiny optical signal emitted from the core photosynthetic machinery, has emerged as a promising tool to evaluate vegetation growth from satellites. We find satellite SIF can capture intra-seasonal (i.e., from days to weeks) vegetation dynamics of dryland ecosystems, while greenness-based vegetation indices cannot. This study generates novel insights for developing effective real-time vegetation monitoring systems to inform climate risk management.
Solar-induced chlorophyll fluorescence (SIF), a tiny optical signal emitted from the core...
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