Articles | Volume 10, issue 11
https://doi.org/10.5194/bg-10-7395-2013
© Author(s) 2013. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-10-7395-2013
© Author(s) 2013. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
19 Nov 2013
Research article |
| 19 Nov 2013
Measurements of nitrite production in and around the primary nitrite maximum in the central California Current
A. E. Santoro
Horn Point Laboratory, University of Maryland Center for Environmental Science, Cambridge, Maryland 21613, USA
C. M. Sakamoto
Department of Environmental Earth System Science, Stanford University, Stanford, California 94305, USA
J. M. Smith
Monterey Bay Aquarium Research Institute, Moss Landing, California 95039, USA
J. N. Plant
Department of Environmental Earth System Science, Stanford University, Stanford, California 94305, USA
A. L. Gehman
Department of Environmental Earth System Science, Stanford University, Stanford, California 94305, USA
Present address: Odum School of Ecology, University of Georgia, Athens, Georgia 30602, USA
A. Z. Worden
Department of Environmental Earth System Science, Stanford University, Stanford, California 94305, USA
K. S. Johnson
Department of Environmental Earth System Science, Stanford University, Stanford, California 94305, USA
C. A. Francis
Monterey Bay Aquarium Research Institute, Moss Landing, California 95039, USA
K. L. Casciotti
Monterey Bay Aquarium Research Institute, Moss Landing, California 95039, USA
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Nitrification and nitrifiers play an important role in marine nitrogen and carbon cycles by converting ammonium to nitrite and nitrate. Nitrification could affect microbial community structure, marine productivity, and the production of nitrous oxide – a powerful greenhouse gas. We introduce the newly constructed database of nitrification and nitrifiers in the marine water column and guide future research efforts in field observations and model development of nitrification.
Colleen L. Hoffman, Patrick J. Monreal, Justine B. Albers, Alastair J. M. Lough, Alyson E. Santoro, Travis Mellett, Kristen N. Buck, Alessandro Tagliabue, Maeve C. Lohan, Joseph A. Resing, and Randelle M. Bundy
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Hydrothermally-derived iron can be transported thousands of kilometers away from deep-sea vents, representing a significant flux of vital micronutrients to the ocean. However, the mechanisms that support the stabilization and transport of dissolved iron remain elusive. Using electrochemical methods, advanced mass spectrometry techniques, and genomic tools we demonstrate that strong microbially-produced ligands appear to exert an important control on plume iron biogeochemistry and dissemination.
Emily J. Zakem, Barbara Bayer, Wei Qin, Alyson E. Santoro, Yao Zhang, and Naomi M. Levine
Biogeosciences, 19, 5401–5418, https://doi.org/10.5194/bg-19-5401-2022, https://doi.org/10.5194/bg-19-5401-2022, 2022
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We use a microbial ecosystem model to quantitatively explain the mechanisms controlling observed relative abundances and nitrification rates of ammonia- and nitrite-oxidizing microorganisms in the ocean. We also estimate how much global carbon fixation can be associated with chemoautotrophic nitrification. Our results improve our understanding of the controls on nitrification, laying the groundwork for more accurate predictions in global climate models.
Samuel T. Wilson, Hermann W. Bange, Damian L. Arévalo-Martínez, Jonathan Barnes, Alberto V. Borges, Ian Brown, John L. Bullister, Macarena Burgos, David W. Capelle, Michael Casso, Mercedes de la Paz, Laura Farías, Lindsay Fenwick, Sara Ferrón, Gerardo Garcia, Michael Glockzin, David M. Karl, Annette Kock, Sarah Laperriere, Cliff S. Law, Cara C. Manning, Andrew Marriner, Jukka-Pekka Myllykangas, John W. Pohlman, Andrew P. Rees, Alyson E. Santoro, Philippe D. Tortell, Robert C. Upstill-Goddard, David P. Wisegarver, Gui-Ling Zhang, and Gregor Rehder
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To determine the variability between independent measurements of dissolved methane and nitrous oxide, seawater samples were analyzed by multiple laboratories. The results revealed the influences of the different parts of the analytical process, from the initial sample collection to the calculation of the final concentrations. Recommendations are made to improve dissolved methane and nitrous oxide measurements to help preclude future analytical discrepancies between laboratories.
Weiyi Tang, Bess B. Ward, Michael Beman, Laura Bristow, Darren Clark, Sarah Fawcett, Claudia Frey, François Fripiat, Gerhard J. Herndl, Mhlangabezi Mdutyana, Fabien Paulot, Xuefeng Peng, Alyson E. Santoro, Takuhei Shiozaki, Eva Sintes, Charles Stock, Xin Sun, Xianhui S. Wan, Min N. Xu, and Yao Zhang
Earth Syst. Sci. Data, 15, 5039–5077, https://doi.org/10.5194/essd-15-5039-2023, https://doi.org/10.5194/essd-15-5039-2023, 2023
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Nitrification and nitrifiers play an important role in marine nitrogen and carbon cycles by converting ammonium to nitrite and nitrate. Nitrification could affect microbial community structure, marine productivity, and the production of nitrous oxide – a powerful greenhouse gas. We introduce the newly constructed database of nitrification and nitrifiers in the marine water column and guide future research efforts in field observations and model development of nitrification.
Colleen L. Hoffman, Patrick J. Monreal, Justine B. Albers, Alastair J. M. Lough, Alyson E. Santoro, Travis Mellett, Kristen N. Buck, Alessandro Tagliabue, Maeve C. Lohan, Joseph A. Resing, and Randelle M. Bundy
EGUsphere, https://doi.org/10.1101/2023.01.05.522639, https://doi.org/10.1101/2023.01.05.522639, 2023
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Hydrothermally-derived iron can be transported thousands of kilometers away from deep-sea vents, representing a significant flux of vital micronutrients to the ocean. However, the mechanisms that support the stabilization and transport of dissolved iron remain elusive. Using electrochemical methods, advanced mass spectrometry techniques, and genomic tools we demonstrate that strong microbially-produced ligands appear to exert an important control on plume iron biogeochemistry and dissemination.
Emily J. Zakem, Barbara Bayer, Wei Qin, Alyson E. Santoro, Yao Zhang, and Naomi M. Levine
Biogeosciences, 19, 5401–5418, https://doi.org/10.5194/bg-19-5401-2022, https://doi.org/10.5194/bg-19-5401-2022, 2022
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We use a microbial ecosystem model to quantitatively explain the mechanisms controlling observed relative abundances and nitrification rates of ammonia- and nitrite-oxidizing microorganisms in the ocean. We also estimate how much global carbon fixation can be associated with chemoautotrophic nitrification. Our results improve our understanding of the controls on nitrification, laying the groundwork for more accurate predictions in global climate models.
Samuel T. Wilson, Hermann W. Bange, Damian L. Arévalo-Martínez, Jonathan Barnes, Alberto V. Borges, Ian Brown, John L. Bullister, Macarena Burgos, David W. Capelle, Michael Casso, Mercedes de la Paz, Laura Farías, Lindsay Fenwick, Sara Ferrón, Gerardo Garcia, Michael Glockzin, David M. Karl, Annette Kock, Sarah Laperriere, Cliff S. Law, Cara C. Manning, Andrew Marriner, Jukka-Pekka Myllykangas, John W. Pohlman, Andrew P. Rees, Alyson E. Santoro, Philippe D. Tortell, Robert C. Upstill-Goddard, David P. Wisegarver, Gui-Ling Zhang, and Gregor Rehder
Biogeosciences, 15, 5891–5907, https://doi.org/10.5194/bg-15-5891-2018, https://doi.org/10.5194/bg-15-5891-2018, 2018
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To determine the variability between independent measurements of dissolved methane and nitrous oxide, seawater samples were analyzed by multiple laboratories. The results revealed the influences of the different parts of the analytical process, from the initial sample collection to the calculation of the final concentrations. Recommendations are made to improve dissolved methane and nitrous oxide measurements to help preclude future analytical discrepancies between laboratories.
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Uncertainty in the evolution of northwestern North Atlantic circulation leads to diverging biogeochemical projections
The additionality problem of ocean alkalinity enhancement
Short-term variation in pH in seawaters around coastal areas of Japan: characteristics and forcings
Revisiting the applicability and constraints of molybdenum- and uranium-based paleo redox proxies: comparing two contrasting sill fjords
Influence of a small submarine canyon on biogenic matter export flux in the lower St. Lawrence Estuary, eastern Canada
Single-celled bioturbators: benthic foraminifera mediate oxygen penetration and prokaryotic diversity in intertidal sediment
Assessing impacts of coastal warming, acidification, and deoxygenation on Pacific oyster (Crassostrea gigas) farming: a case study in the Hinase area, Okayama Prefecture, and Shizugawa Bay, Miyagi Prefecture, Japan
Seasonality and response of ocean acidification and hypoxia to major environmental anomalies in the southern Salish Sea, North America (2014–2018)
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Multiple nitrogen sources for primary production inferred from δ13C and δ15N in the southern Sea of Japan
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Krysten Rutherford, Katja Fennel, Lina Garcia Suarez, and Jasmin G. John
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Tsuneo Ono, Daisuke Muraoka, Masahiro Hayashi, Makiko Yorifuji, Akihiro Dazai, Shigeyuki Omoto, Takehiro Tanaka, Tomohiro Okamura, Goh Onitsuka, Kenji Sudo, Masahiko Fujii, Ryuji Hamanoue, and Masahide Wakita
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We carried out parallel year-round observations of pH and related parameters in five stations around the Japan coast. It was found that short-term acidified situations with Omega_ar less than 1.5 occurred at four of five stations. Most of such short-term acidified events were related to the short-term low salinity event, and the extent of short-term pH drawdown at high freshwater input was positively correlated with the nutrient concentration of the main rivers that flow into the coastal area.
K. Mareike Paul, Martijn Hermans, Sami A. Jokinen, Inda Brinkmann, Helena L. Filipsson, and Tom Jilbert
Biogeosciences, 20, 5003–5028, https://doi.org/10.5194/bg-20-5003-2023, https://doi.org/10.5194/bg-20-5003-2023, 2023
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Seawater naturally contains trace metals such as Mo and U, which accumulate under low oxygen conditions on the seafloor. Previous studies have used sediment Mo and U contents as an archive of changing oxygen concentrations in coastal waters. Here we show that in fjords the use of Mo and U for this purpose may be impaired by additional processes. Our findings have implications for the reliable use of Mo and U to reconstruct oxygen changes in fjords.
Hannah Sharpe, Michel Gosselin, Catherine Lalande, Alexandre Normandeau, Jean-Carlos Montero-Serrano, Khouloud Baccara, Daniel Bourgault, Owen Sherwood, and Audrey Limoges
Biogeosciences, 20, 4981–5001, https://doi.org/10.5194/bg-20-4981-2023, https://doi.org/10.5194/bg-20-4981-2023, 2023
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Dewi Langlet, Florian Mermillod-Blondin, Noémie Deldicq, Arthur Bauville, Gwendoline Duong, Lara Konecny, Mylène Hugoni, Lionel Denis, and Vincent M. P. Bouchet
Biogeosciences, 20, 4875–4891, https://doi.org/10.5194/bg-20-4875-2023, https://doi.org/10.5194/bg-20-4875-2023, 2023
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Benthic foraminifera are single-cell marine organisms which can move in the sediment column. They were previously reported to horizontally and vertically transport sediment particles, yet the impact of their motion on the dissolved fluxes remains unknown. Using microprofiling, we show here that foraminiferal burrow formation increases the oxygen penetration depth in the sediment, leading to a change in the structure of the prokaryotic community.
Masahiko Fujii, Ryuji Hamanoue, Lawrence Patrick Cases Bernardo, Tsuneo Ono, Akihiro Dazai, Shigeyuki Oomoto, Masahide Wakita, and Takehiro Tanaka
Biogeosciences, 20, 4527–4549, https://doi.org/10.5194/bg-20-4527-2023, https://doi.org/10.5194/bg-20-4527-2023, 2023
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This is the first study of the current and future impacts of climate change on Pacific oyster farming in Japan. Future coastal warming and acidification may affect oyster larvae as a result of longer exposure to lower-pH waters. A prolonged spawning period may harm oyster processing by shortening the shipping period and reducing oyster quality. To minimize impacts on Pacific oyster farming, in addition to mitigation measures, local adaptation measures may be required.
Simone R. Alin, Jan A. Newton, Richard A. Feely, Samantha A. Siedlecki, and Dana J. Greeley
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-181, https://doi.org/10.5194/bg-2023-181, 2023
Revised manuscript accepted for BG
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We provide a new multi-stressor data product allowed us to characterize the seasonality of temperature, oxygen, and carbon dioxide in the southern Salish Sea and provided insight into impacts of major marine heatwave and precipitation anomalies on regional ocean acidification and hypoxia. We also described the present-day frequencies of temperature, oxygen, and ocean acidification conditions that cross thresholds of sensitive regional species that are economically or ecologically important.
S. Alejandra Castillo Cieza, Rachel H. R. Stanley, Pierre Marrec, Diana N. Fontaine, E. Taylor Crockford, Dennis J. McGillicuddy, Arshia Mehta, Susanne Menden-Deuer, Emily E. Peacock, Tatiana A. Rynearson, Zoe O. Sandwith, Weifeng Zhang, and Heidi M. Sosik
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-153, https://doi.org/10.5194/bg-2023-153, 2023
Revised manuscript accepted for BG
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The coastal ocean in northeastern USA provides many services, including fisheries and habitat for threatened species. In summer 2019, a bloom occurred of an unusual large phytoplankton, the diatom Hemiaulus with nitrogen fixing symbionts. This led to vast changes in productivity and grazing rates in the ecosystem. This work shows that the emergence of one species can have profound effects on ecosystem function. Such changes maybe become more prevalent as the ocean warms due to climate change.
Taketoshi Kodama, Atsushi Nishimoto, Ken-ichi Nakamura, Misato Nakae, Naoki Iguchi, Yosuke Igeta, and Yoichi Kogure
Biogeosciences, 20, 3667–3682, https://doi.org/10.5194/bg-20-3667-2023, https://doi.org/10.5194/bg-20-3667-2023, 2023
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Carbon and nitrogen are essential elements for organisms; their stable isotope ratios (13C : 12C, 15N : 14N) are useful tools for understanding turnover and movement in the ocean. In the Sea of Japan, the environment is rapidly being altered by human activities. The 13C : 12C of small organic particles is increased by active carbon fixation, and phytoplankton growth increases the values. The 15N : 14N variations suggest that nitrates from many sources contribute to organic production.
Eleanor Simpson, Debby Ianson, Karen Elizabeth Kohfeld, Ana C. Franco, Paul A. Covert, Marty Davelaar, and Yves Perreault
EGUsphere, https://doi.org/10.5194/egusphere-2023-1553, https://doi.org/10.5194/egusphere-2023-1553, 2023
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Shellfish aquaculture operates in nearshore areas where data on key ocean acidification (OA) parameters is limited. We show daily and seasonal variability in chemical properties at nearshore aquaculture sites in Canada and define drivers of these changes. Nearshore locations have greater variability than open waters and uptake of carbon by phytoplankton is the major driver of variability. Areas with high primary productivity are recommended for aquaculture as they will be less vulnerable to OA.
Aubin Thibault de Chanvalon, George W. Luther, Emily R. Estes, Jennifer Necker, Bradley M. Tebo, Jianzhong Su, and Wei-Jun Cai
Biogeosciences, 20, 3053–3071, https://doi.org/10.5194/bg-20-3053-2023, https://doi.org/10.5194/bg-20-3053-2023, 2023
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The intensity of the oceanic trap of CO2 released by anthropogenic activities depends on the alkalinity brought by continental weathering. Between ocean and continent, coastal water and estuaries can limit or favour the alkalinity transfer. This study investigate new interactions between dissolved metals and alkalinity in the oxygen-depleted zone of estuaries.
William Hiles, Lucy Catherine Miller, Craig Smeaton, and William Edward Newns Austin
EGUsphere, https://doi.org/10.5194/egusphere-2023-1185, https://doi.org/10.5194/egusphere-2023-1185, 2023
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Saltmarsh soils may help to limit the rate of climate change by storing carbon. To understand their impacts, they must be accurately mapped. We use drone data to estimate the size of three saltmarshes in NE Scotland. We find that drone imagery, combined with tidal data, can reliably inform our understanding of saltmarsh size. When compared with previous work using vegetation communities, we find that our most reliable new estimates of stored carbon are 15–20 % smaller than previously estimated.
Joonas J. Virtasalo, Peter Österholm, and Eero Asmala
Biogeosciences, 20, 2883–2901, https://doi.org/10.5194/bg-20-2883-2023, https://doi.org/10.5194/bg-20-2883-2023, 2023
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We mixed acidic metal-rich river water from acid sulfate soils and seawater in the laboratory to study the flocculation of dissolved metals and organic matter in estuaries. Al and Fe flocculated already at a salinity of 0–2 to large organic flocs (>80 µm size). Precipitation of Al and Fe hydroxide flocculi (median size 11 µm) began when pH exceeded ca. 5.5. Mn transferred weakly to Mn hydroxides and Co to the flocs. Up to 50 % of Cu was associated with the flocs, irrespective of seawater mixing.
Claudine Hauri, Brita Irving, Sam Dupont, Remi Pages, Donna Hauser, and Seth Danielson
EGUsphere, https://doi.org/10.5194/egusphere-2023-1386, https://doi.org/10.5194/egusphere-2023-1386, 2023
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Arctic marine ecosystems are highly susceptible to impacts of climate change and ocean acidification. We present pH and pCO2 time-series (2016–2020) from the Chukchi Ecosystem Observatory and analyze the drivers of the current conditions to get a better understanding of how climate change and ocean acidification could affect the ecological niches of organisms.
Moritz Baumann, Allanah Joy Paul, Jan Taucher, Lennart Thomas Bach, Silvan Goldenberg, Paul Stange, Fabrizio Minutolo, and Ulf Riebesell
Biogeosciences, 20, 2595–2612, https://doi.org/10.5194/bg-20-2595-2023, https://doi.org/10.5194/bg-20-2595-2023, 2023
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The sinking velocity of marine particles affects how much atmospheric CO2 is stored inside our oceans. We measured particle sinking velocities in the Peruvian upwelling system and assessed their physical and biochemical drivers. We found that sinking velocity was mainly influenced by particle size and porosity, while ballasting minerals played only a minor role. Our findings help us to better understand the particle sinking dynamics in this highly productive marine system.
Charlotte Williams, Tom Hull, Matthew Palmer, Claire Mahaffey, Naomi Greenwood, Jan Kaiser, and Matthew Toberman
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-100, https://doi.org/10.5194/bg-2023-100, 2023
Revised manuscript accepted for BG
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Oxygen (O2) is a key indicator of ocean health. The risk of O2 loss in the productive coastal/continental slope regions is increasing. Autonomous underwater vehicles equipped with O2 optodes provide lots of data, but have problems resolving strong vertical O2 changes. Here we show how to overcome this and calculate how much O2 is supplied to the low-O2 bottom waters via mixing. Bursts in mixing supply nearly all of the O2 to bottom waters in autumn, stopping them reach ecologically low levels.
Kyle E. Hinson, Marjorie A. M. Friedrichs, Raymond G. Najjar, Maria Herrmann, Zihao Bian, Gopal Bhatt, Pierre St-Laurent, Hanqin Tian, and Gary Shenk
Biogeosciences, 20, 1937–1961, https://doi.org/10.5194/bg-20-1937-2023, https://doi.org/10.5194/bg-20-1937-2023, 2023
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Climate impacts are essential for environmental managers to consider when implementing nutrient reduction plans designed to reduce hypoxia. This work highlights relative sources of uncertainty in modeling regional climate impacts on the Chesapeake Bay watershed and consequent declines in bay oxygen levels. The results demonstrate that planned water quality improvement goals are capable of reducing hypoxia levels by half, offsetting climate-driven impacts on terrestrial runoff.
Linquan Mu, Jaime B. Palter, and Hongjie Wang
Biogeosciences, 20, 1963–1977, https://doi.org/10.5194/bg-20-1963-2023, https://doi.org/10.5194/bg-20-1963-2023, 2023
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Enhancing ocean alkalinity accelerates carbon dioxide removal from the atmosphere. We hypothetically added alkalinity to the Amazon River and examined the increment of the carbon uptake by the Amazon plume. We also investigated the minimum alkalinity addition in which this perturbation at the river mouth could be detected above the natural variability.
Ting Wang, Buyun Du, Inke Forbrich, Jun Zhou, Joshua Polen, Elsie M. Sunderland, Prentiss H. Balcom, Celia Y. Chen, and Daniel Obrist
EGUsphere, https://doi.org/10.5194/egusphere-2023-720, https://doi.org/10.5194/egusphere-2023-720, 2023
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The strong seasonal increases of Hg in aboveground biomass during the growing season and the lack of changes observed after senescence in this salt marsh ecosystem suggest physiologically controlled Hg uptake pathways. The Hg sources found in marsh aboveground tissues originate from a mix of sources, unlike terrestrial ecosystems where atmospheric GEM is the main source. While belowground plant tissues mostly take up Hg from soils. Overall, the salt marsh currently serves as a small net Hg sink.
Karl M. Attard, Anna Lyssenko, and Iván F. Rodil
Biogeosciences, 20, 1713–1724, https://doi.org/10.5194/bg-20-1713-2023, https://doi.org/10.5194/bg-20-1713-2023, 2023
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Aquatic plants produce a large amount of organic matter through photosynthesis that, following erosion, is deposited on the seafloor. In this study, we show that plant detritus can trigger low-oxygen conditions (hypoxia) in shallow coastal waters, making conditions challenging for most marine animals. We propose that the occurrence of hypoxia may be underestimated because measurements typically do not consider the region closest to the seafloor, where detritus accumulates.
Pamela Linford, Iván Pérez-Santos, Paulina Montero, Patricio Díaz, Claudia Aracena, Elías Pinilla, Facundo Barrera, Manuel Castillo, Aida Alvera-Azcárate, Mónica Alvarado, Gabriel Soto, Cécile Pujol, Camila Schwerter, Sara Arenas-Uribe, Pilar Navarro, Guido Mancilla-Gutiérrez, Robinson Altamirano, Javiera San Martín, and Camila Soto-Riquelme
EGUsphere, https://doi.org/10.5194/egusphere-2023-706, https://doi.org/10.5194/egusphere-2023-706, 2023
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The Patagonian fjord is one world region where low-oxygen water and hypoxia conditions is observed. An in-situ data set was used to quantify the mechanism involved in the presence of low-oxygen water and hypoxic conditions in northern Patagonian fjords. Water mass analysis confirmed the contribution of equatorial subsurface water in the advection of the low-oxygen water and hypoxic conditions occurred when the community respiration rate exceeded the gross primary production.
M. James McLaughlin, Cindy Bessey, Gary A. Kendrick, John Keesing, and Ylva S. Olsen
Biogeosciences, 20, 1011–1026, https://doi.org/10.5194/bg-20-1011-2023, https://doi.org/10.5194/bg-20-1011-2023, 2023
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Coral reefs face increasing pressures from environmental change at present. The coral reef framework is produced by corals and calcifying algae. The Kimberley region of Western Australia has escaped land-based anthropogenic impacts. Specimens of the dominant coral and algae were collected from Browse Island's reef platform and incubated in mesocosms to measure calcification and production patterns of oxygen. This study provides important data on reef building and climate-driven effects.
Patricia Ayón Dejo, Elda Luz Pinedo Arteaga, Anna Schukat, Jan Taucher, Rainer Kiko, Helena Hauss, Sabrina Dorschner, Wilhelm Hagen, Mariona Segura-Noguera, and Silke Lischka
Biogeosciences, 20, 945–969, https://doi.org/10.5194/bg-20-945-2023, https://doi.org/10.5194/bg-20-945-2023, 2023
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Ocean upwelling regions are highly productive. With ocean warming, severe changes in upwelling frequency and/or intensity and expansion of accompanying oxygen minimum zones are projected. In a field experiment off Peru, we investigated how different upwelling intensities affect the pelagic food web and found failed reproduction of dominant zooplankton. The changes projected could severely impact the reproductive success of zooplankton communities and the pelagic food web in upwelling regions.
Mathilde Jutras, Alfonso Mucci, Gwenaëlle Chaillou, William A. Nesbitt, and Douglas W. R. Wallace
Biogeosciences, 20, 839–849, https://doi.org/10.5194/bg-20-839-2023, https://doi.org/10.5194/bg-20-839-2023, 2023
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The deep waters of the lower St Lawrence Estuary and gulf have, in the last decades, experienced a strong decline in their oxygen concentration. Below 65 µmol L-1, the waters are said to be hypoxic, with dire consequences for marine life. We show that the extent of the hypoxic zone shows a seven-fold increase in the last 20 years, reaching 9400 km2 in 2021. After a stable period at ~ 65 µmol L⁻¹ from 1984 to 2019, the oxygen level also suddenly decreased to ~ 35 µmol L-1 in 2020.
Sachi Umezawa, Manami Tozawa, Yuichi Nosaka, Daiki Nomura, Hiroji Onishi, Hiroto Abe, Tetsuya Takatsu, and Atsushi Ooki
Biogeosciences, 20, 421–438, https://doi.org/10.5194/bg-20-421-2023, https://doi.org/10.5194/bg-20-421-2023, 2023
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We conducted repetitive observations in Funka Bay, Japan, during the spring bloom 2019. We found nutrient concentration decreases in the dark subsurface layer during the bloom. Incubation experiments confirmed that diatoms could consume nutrients at a substantial rate, even in darkness. We concluded that the nutrient reduction was mainly caused by nutrient consumption by diatoms in the dark.
Dirk Jong, Lisa Bröder, Tommaso Tesi, Kirsi H. Keskitalo, Nikita Zimov, Anna Davydova, Philip Pika, Negar Haghipour, Timothy I. Eglinton, and Jorien E. Vonk
Biogeosciences, 20, 271–294, https://doi.org/10.5194/bg-20-271-2023, https://doi.org/10.5194/bg-20-271-2023, 2023
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With this study, we want to highlight the importance of studying both land and ocean together, and water and sediment together, as these systems function as a continuum, and determine how organic carbon derived from permafrost is broken down and its effect on global warming. Although on the one hand it appears that organic carbon is removed from sediments along the pathway of transport from river to ocean, it also appears to remain relatively ‘fresh’, despite this removal and its very old age.
Georgia Filippi, Manos Dassenakis, Vasiliki Paraskevopoulou, and Konstantinos Lazogiannis
Biogeosciences, 20, 163–189, https://doi.org/10.5194/bg-20-163-2023, https://doi.org/10.5194/bg-20-163-2023, 2023
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The pollution of the western Saronikos Gulf from heavy metals has been examined through the study of marine sediment cores. It is a deep gulf (maximum depth 440 m) near Athens affected by industrial and volcanic activity. Eight cores were received from various stations and depths and analysed for their heavy metal content and geochemical characteristics. The results were evaluated by using statistical methods, environmental indicators and comparisons with old data.
Jing He and Michael D. Tyka
Biogeosciences, 20, 27–43, https://doi.org/10.5194/bg-20-27-2023, https://doi.org/10.5194/bg-20-27-2023, 2023
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Recently, ocean alkalinity enhancement (OAE) has gained interest as a scalable way to address the urgent need for negative CO2 emissions. In this paper we examine the capacity of different coastlines to tolerate alkalinity enhancement and the time scale of CO2 uptake following the addition of a given quantity of alkalinity. The results suggest that OAE has significant potential and identify specific favorable and unfavorable coastlines for its deployment.
Arnaud Laurent, Haiyan Zhang, and Katja Fennel
Biogeosciences, 19, 5893–5910, https://doi.org/10.5194/bg-19-5893-2022, https://doi.org/10.5194/bg-19-5893-2022, 2022
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The Changjiang is the main terrestrial source of nutrients to the East China Sea (ECS). Nutrient delivery to the ECS has been increasing since the 1960s, resulting in low oxygen (hypoxia) during phytoplankton decomposition in summer. River phosphorus (P) has increased less than nitrogen, and therefore, despite the large nutrient delivery, phytoplankton growth can be limited by the lack of P. Here, we investigate this link between P limitation, phytoplankton production/decomposition, and hypoxia.
Coline Poppeschi, Guillaume Charria, Anne Daniel, Romaric Verney, Peggy Rimmelin-Maury, Michaël Retho, Eric Goberville, Emilie Grossteffan, and Martin Plus
Biogeosciences, 19, 5667–5687, https://doi.org/10.5194/bg-19-5667-2022, https://doi.org/10.5194/bg-19-5667-2022, 2022
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This paper aims to understand interannual changes in the initiation of the phytoplankton growing period (IPGP) in the current context of global climate changes over the last 20 years. An important variability in the timing of the IPGP is observed with a trend towards a later IPGP during this last decade. The role and the impact of extreme events (cold spells, floods, and wind burst) on the IPGP is also detailed.
Lin Yang, Jing Zhang, Anja Engel, and Gui-Peng Yang
Biogeosciences, 19, 5251–5268, https://doi.org/10.5194/bg-19-5251-2022, https://doi.org/10.5194/bg-19-5251-2022, 2022
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Enrichment factors of dissolved organic matter (DOM) in the eastern marginal seas of China exhibited a significant spatio-temporal variation. Photochemical and enrichment processes co-regulated DOM enrichment in the sea-surface microlayer (SML). Autochthonous DOM was more frequently enriched in the SML than terrestrial DOM. DOM in the sub-surface water exhibited higher aromaticity than that in the SML.
Mona Norbisrath, Johannes Pätsch, Kirstin Dähnke, Tina Sanders, Gesa Schulz, Justus E. E. van Beusekom, and Helmuth Thomas
Biogeosciences, 19, 5151–5165, https://doi.org/10.5194/bg-19-5151-2022, https://doi.org/10.5194/bg-19-5151-2022, 2022
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Total alkalinity (TA) regulates the oceanic storage capacity of atmospheric CO2. TA is also metabolically generated in estuaries and influences coastal carbon storage through its inflows. We used water samples and identified the Hamburg port area as the one with highest TA generation. Of the overall riverine TA load, 14 % is generated within the estuary. Using a biogeochemical model, we estimated potential effects on the coastal carbon storage under possible anthropogenic and climate changes.
Le Zhang and Z. George Xue
Biogeosciences, 19, 4589–4618, https://doi.org/10.5194/bg-19-4589-2022, https://doi.org/10.5194/bg-19-4589-2022, 2022
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We adopt a high-resolution carbon model for the Gulf of Mexico (GoM) and calculate the decadal trends of important carbon system variables in the GoM from 2001 to 2019. The GoM surface CO2 values experienced a steady increase over the past 2 decades, and the ocean surface pH is declining. Although carbonate saturation rates remain supersaturated with aragonite, they show a slightly decreasing trend. The northern GoM is a stronger carbon sink than we thought.
Michael M. Whitney
Biogeosciences, 19, 4479–4497, https://doi.org/10.5194/bg-19-4479-2022, https://doi.org/10.5194/bg-19-4479-2022, 2022
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Coastal hypoxia is a major environmental problem of increasing severity. The 21st-century projections analyzed indicate global coastal waters will warm and experience rapid declines in oxygen. The forecasted median coastal trends for increasing sea surface temperature and decreasing oxygen capacity are 48 % and 18 % faster than the rates observed over the last 4 decades. Existing hypoxic areas are expected to worsen, and new hypoxic areas likely will emerge under these warming-related pressures.
Bryce Van Dam, Nele Lehmann, Mary A. Zeller, Andreas Neumann, Daniel Pröfrock, Marko Lipka, Helmuth Thomas, and Michael Ernst Böttcher
Biogeosciences, 19, 3775–3789, https://doi.org/10.5194/bg-19-3775-2022, https://doi.org/10.5194/bg-19-3775-2022, 2022
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We quantified sediment–water exchange at shallow sites in the North and Baltic seas. We found that porewater irrigation rates in the former were approximately twice as high as previously estimated, likely driven by relatively high bioirrigative activity. In contrast, we found small net fluxes of alkalinity, ranging from −35 µmol m−2 h−1 (uptake) to 53 µmol m−2 h−1 (release). We attribute this to low net denitrification, carbonate mineral (re-)precipitation, and sulfide (re-)oxidation.
Jiaying Abby Guo, Robert Strzepek, Anusuya Willis, Aaron Ferderer, and Lennart Thomas Bach
Biogeosciences, 19, 3683–3697, https://doi.org/10.5194/bg-19-3683-2022, https://doi.org/10.5194/bg-19-3683-2022, 2022
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Ocean alkalinity enhancement is a CO2 removal method with significant potential, but it can lead to a perturbation of the ocean with trace metals such as nickel. This study tested the effect of increasing nickel concentrations on phytoplankton growth and photosynthesis. We found that the response to nickel varied across the 11 phytoplankton species tested here, but the majority were rather insensitive. We note, however, that responses may be different under other experimental conditions.
Malcolm E. Scully, W. Rockwell Geyer, David Borkman, Tracy L. Pugh, Amy Costa, and Owen C. Nichols
Biogeosciences, 19, 3523–3536, https://doi.org/10.5194/bg-19-3523-2022, https://doi.org/10.5194/bg-19-3523-2022, 2022
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For two consecutive summers, the bottom waters in southern Cape Cod Bay became severely depleted of dissolved oxygen. Low oxygen levels in bottom waters have never been reported in this area before, and this unprecedented occurrence is likely the result of a new algae species that recently began blooming during the late-summer months. We present data suggesting that blooms of this new species are the result of regional climate change including warmer waters and changes in summer winds.
Zheng Chen, Bin Wang, Chuang Xu, Zhongren Zhang, Shiyu Li, and Jiatang Hu
Biogeosciences, 19, 3469–3490, https://doi.org/10.5194/bg-19-3469-2022, https://doi.org/10.5194/bg-19-3469-2022, 2022
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Deterioration of low-oxygen conditions in the coastal waters off Hong Kong was revealed by monitoring data over two decades. The declining wind forcing and the increasing nutrient input contributed significantly to the areal expansion and intense deterioration of low-oxygen conditions. Also, the exacerbated eutrophication drove a shift in the dominant source of organic matter from terrestrial inputs to in situ primary production, which has probably led to an earlier onset of hypoxia in summer.
Stella-Theresa Stoicescu, Jaan Laanemets, Taavi Liblik, Māris Skudra, Oliver Samlas, Inga Lips, and Urmas Lips
Biogeosciences, 19, 2903–2920, https://doi.org/10.5194/bg-19-2903-2022, https://doi.org/10.5194/bg-19-2903-2022, 2022
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Coastal basins with high input of nutrients often suffer from oxygen deficiency. In summer 2018, the extent of oxygen depletion was exceptional in the Gulf of Riga. We analyzed observational data and found that extensive oxygen deficiency appeared since the water layer close to the seabed, where oxygen is consumed, was separated from the surface layer. The problem worsens if similar conditions restricting vertical transport of oxygen occur more frequently in the future.
Justin C. Tiano, Jochen Depestele, Gert Van Hoey, João Fernandes, Pieter van Rijswijk, and Karline Soetaert
Biogeosciences, 19, 2583–2598, https://doi.org/10.5194/bg-19-2583-2022, https://doi.org/10.5194/bg-19-2583-2022, 2022
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This study gives an assessment of bottom trawling on physical, chemical, and biological characteristics in a location known for its strong currents and variable habitats. Although trawl gears only removed the top 1 cm of the seabed surface, impacts on reef-building tubeworms significantly decreased carbon and nutrient cycling. Lighter trawls slightly reduced the impact on fauna and nutrients. Tubeworms were strongly linked to biogeochemical and faunal aspects before but not after trawling.
Inda Brinkmann, Christine Barras, Tom Jilbert, Tomas Næraa, K. Mareike Paul, Magali Schweizer, and Helena L. Filipsson
Biogeosciences, 19, 2523–2535, https://doi.org/10.5194/bg-19-2523-2022, https://doi.org/10.5194/bg-19-2523-2022, 2022
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The concentration of the trace metal barium (Ba) in coastal seawater is a function of continental input, such as riverine discharge. Our geochemical records of the severely hot and dry year 2018, and following wet year 2019, reveal that prolonged drought imprints with exceptionally low Ba concentrations in benthic foraminiferal calcium carbonates of coastal sediments. This highlights the potential of benthic Ba / Ca to trace past climate extremes and variability in coastal marine records.
Shichao Tian, Birgit Gaye, Jianhui Tang, Yongming Luo, Wenguo Li, Niko Lahajnar, Kirstin Dähnke, Tina Sanders, Tianqi Xiong, Weidong Zhai, and Kay-Christian Emeis
Biogeosciences, 19, 2397–2415, https://doi.org/10.5194/bg-19-2397-2022, https://doi.org/10.5194/bg-19-2397-2022, 2022
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We constrain the nitrogen budget and in particular the internal sources and sinks of nitrate in the Bohai Sea by using a mass-based and dual stable isotope approach based on δ15N and δ18O of nitrate. Based on available mass fluxes and isotope data an updated nitrogen budget is proposed. Compared to previous estimates, it is more complete and includes the impact of the interior cycle (nitrification) on the nitrate pool. The main external nitrogen sources are rivers contributing 19.2 %–25.6 %.
Gesa Schulz, Tina Sanders, Justus E. E. van Beusekom, Yoana G. Voynova, Andreas Schöl, and Kirstin Dähnke
Biogeosciences, 19, 2007–2024, https://doi.org/10.5194/bg-19-2007-2022, https://doi.org/10.5194/bg-19-2007-2022, 2022
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Estuaries can significantly alter nutrient loads before reaching coastal waters. Our study of the heavily managed Ems estuary (Northern Germany) reveals three zones of nitrogen turnover along the estuary with water-column denitrification in the most upstream hyper-turbid part, nitrate production in the middle reaches and mixing/nitrate uptake in the North Sea. Suspended particulate matter was the overarching control on nitrogen cycling in the hyper-turbid estuary.
Wiley Evans, Geoffrey T. Lebon, Christen D. Harrington, Yuichiro Takeshita, and Allison Bidlack
Biogeosciences, 19, 1277–1301, https://doi.org/10.5194/bg-19-1277-2022, https://doi.org/10.5194/bg-19-1277-2022, 2022
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Information on the marine carbon dioxide system along the northeast Pacific Inside Passage has been limited. To address this gap, we instrumented an Alaskan ferry in order to characterize the marine carbon dioxide system in this region. Data over a 2-year period were used to assess drivers of the observed variability, identify the timing of severe conditions, and assess the extent of contemporary ocean acidification as well as future levels consistent with a 1.5 °C warmer climate.
Melissa Ward, Tye L. Kindinger, Heidi K. Hirsh, Tessa M. Hill, Brittany M. Jellison, Sarah Lummis, Emily B. Rivest, George G. Waldbusser, Brian Gaylord, and Kristy J. Kroeker
Biogeosciences, 19, 689–699, https://doi.org/10.5194/bg-19-689-2022, https://doi.org/10.5194/bg-19-689-2022, 2022
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Here, we synthesize the results from 62 studies reporting in situ rates of seagrass metabolism to highlight spatial and temporal variability in oxygen fluxes and inform efforts to use seagrass to mitigate ocean acidification. Our analyses suggest seagrass meadows are generally autotrophic and variable in space and time, and the effects on seawater oxygen are relatively small in magnitude.
Tianfei Xue, Ivy Frenger, A. E. Friederike Prowe, Yonss Saranga José, and Andreas Oschlies
Biogeosciences, 19, 455–475, https://doi.org/10.5194/bg-19-455-2022, https://doi.org/10.5194/bg-19-455-2022, 2022
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The Peruvian system supports 10 % of the world's fishing yield. In the Peruvian system, wind and earth’s rotation bring cold, nutrient-rich water to the surface and allow phytoplankton to grow. But observations show that it grows worse at high upwelling. Using a model, we find that high upwelling happens when air mixes the water the most. Then phytoplankton is diluted and grows slowly due to low light and cool upwelled water. This study helps to estimate how it might change in a warming climate.
Shao-Min Chen, Ulf Riebesell, Kai G. Schulz, Elisabeth von der Esch, Eric P. Achterberg, and Lennart T. Bach
Biogeosciences, 19, 295–312, https://doi.org/10.5194/bg-19-295-2022, https://doi.org/10.5194/bg-19-295-2022, 2022
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Oxygen minimum zones in the ocean are characterized by enhanced carbon dioxide (CO2) levels and are being further acidified by increasing anthropogenic atmospheric CO2. Here we report CO2 system measurements in a mesocosm study offshore Peru during a rare coastal El Niño event to investigate how CO2 dynamics may respond to ongoing ocean deoxygenation. Our observations show that nitrogen limitation, productivity, and plankton community shift play an important role in driving the CO2 dynamics.
Cited articles
Al-Qutob, M., Hase, C., Tilzer, M. M., and Lazar, B.: Phytoplankton drives nitrite dynamics in the Gulf of Aqaba, Red Sea. Mar. Ecol. Prog. Ser., 239, 233–239, 2002.
Allen, A. E., Booth, M. G., Frischer, M. E., Verity, P. G., Zehr, J. P., and Zani, S.: Diversity and detection of nitrate assimilation genes in marine bacteria, Appl. Environ. Microbiol., 67, 5343–5348, 2001.
Archer, D., Emerson, S., Powell, T., and Wong, C. S.: Numerical hindcasting of sea surface pCO2 at Weathership Station Papa, Prog. Oceanogr., 32, 319–351, 1993.
Babu, K. N., Sharma, R., Agarwal, N., Agarwal, V. K., and Weller, R. A.: Study of the mixed layer depth variations within the north Indian Ocean using a 1-D model, J. Geophys. Res., 109, C08016, https://doi.org/10.1029/2003JC002024, 2004.
Behrenfeld, M. J., O'Malley, R. T., Siegel, D. A., McClain, C. R., Sarmiento, J. L., Feldman, G. C., Milligan, A. J., Falkowski, P. G., Letelier, R. M., and Boss, E. S.: Climate-driven trends in contemporary ocean productivity, Nature, 444, 752–755, 2006.
Beman, J. M., Popp, B. N., and Francis, C. A.: Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California, ISME Journal, 2, 429–441, 2008.
Beman, J. M., Sachdeva, R., and Fuhrman, J. A.: Population ecology of nitrifying archaea and Bacteria in the Southern California Bight, Environ. Microbiol., 12, 1282–1292, 2010.
Beman, J. M., Popp, B. N., and Alford, S. E.: Quantification of ammonia oxidation rates and ammonia-oxidizing archaea and bacteria at high resolution in the Gulf of California and eastern tropical North Pacific Ocean, Limnol. Oceanogr., 57, 711–726, 2012.
Blainey, P. C., Mosier, A. C., Potanina, A., Francis, C. A., Quake, S. R., and Gilbert, J.: Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis, PLoS One, 6, 148–149, 2011.
Brandhorst, W.: Nitrification and denitrification in the eastern tropical North Pacific, J. Conseil Perm. Int. Expl. Mer., 25, 2–20, 1959.
Buchwald, C. and Casciotti, K. L.: Oxygen isotopic fractionation and exchange during bacterial nitrite oxidation, Limnol. Oceanogr., 55, 1064–1074, 2010.
Buchwald, C. and Casciotti, K. L.: Isotopic ratios of nitrite as tracers of the source and age of oceanic nitrite, Nat. Geosci., 6, 4, 308–313, https://doi.org/10.1038/NGEO1745, 2013.
Buchwald, C., Santoro, A. E., McIlvin, M. R., and Casciotti, K. L.: Oxygen isotopic composition of nitrate and nitrite produced by nitrifying cocultures and natural marine assemblages, Limnol. Oceanogr., 57, 1361–1375, 2012.
Campbell, L. and Vaulot, D.: Photosynthetic picoplankton community structure in the subtropical north Pacific-Ocean near Hawaii (Station AlOHA), Deep-Sea Res. I, 40, 2043–2060, 1993.
Campbell, L., Liu, H. B., Nolla, H. A., and Vaulot, D.: Annual variability of phytoplankton and bacteria in the subtropical North Pacific Ocean at Station ALOHA during the 1991-1994 ENSO event, Deep Sea Res. I, 44, 167–192, 1997.
Casciotti, K. L., and McIlvin, M. R.: Isotopic analyses of nitrate and nitrite from reference mixtures and application to Eastern Tropical North Pacific waters, Mar. Chem., 107, 184–201, 2007.
Casciotti, K. L., Sigman, D. M., Hastings, M. G., Bohlke, J. K., and Hilkert, A.: Measurement of the oxygen isotopic composition of nitrate in seawater and freshwater using the denitrifier method, Anal. Chem., 74, 4905–4912, 2002.
Casciotti, K. L., Bohlke, J. K., McIlvin, M. R., Mroczkowski, S. J., and Hannon, J. E.: Oxygen isotopes in nitrite: Analysis, calibration, and equilibration, Anal. Chem., 79, 2427–2436, 2007.
Casciotti, K. L., McIlvin, M. R., and Buchwald, C.: Oxygen isotopic exchange and fractionation during bacterial ammonia oxidation, Limnol. Oceanogr, 55, 753–762, 2010.
Casey, J. R., Lomas, M. W., Mandecki, J., and Walker, D. E.: Prochlorococcus contributes to new production in the Sargasso Sea deep chlorophyll maximum, Geophys. Res. Lett., 34, L10604, https://doi.org/10.1029/2006GL028725, 2007.
Cavender-Bares, K. K., Karl, D. M., and Chisholm, S. W.: Nutrient gradients in the western North Atlantic Ocean: Relationship to microbial community structure and comparison to patterns in the Pacific Ocean, Deep Sea Res. I, 48, 2373–2395, 2001.
Church, M. J., Karl, D. M., and DeLong, E. F.: Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean, Environ. Microbiol., 12, 679–688, 2010.
Codispoti, L. A., Friederich, G. E., Packard, T. T., Glover, H. E., Kelly, P. J., Spinrad, R. W., Barber, R. T., Elkins, J. W., Ward, B. B., Lipschultz, F., and Lostaunau, N.: High nitrite levels off northern Peru - a signal of instability in the marine denitrification rate, Science, 233, 1200–1202, 1986.
Collins, C. A., Pennington, J. T., Castro, C. G., Rago, T. A., and Chavez, F. P.: The California Current system off Monterey, California: physical and biological coupling, Deep Sea Res. II, 50, 2389–2404, 2003.
Cuvelier, M. L., Allen, A. E., Monier, A., McCrow, J. P., Messie, M., Tringe, S. G., Woyke, T., Welsh, R. M., Ishoey, T., Lee, J. H., Binder, B. J., DuPont, C. L., Latasa, M., Guigand, C., Buck, K. R., Hilton, J., Thiagarajan, M., Caler, E., Read, B., Lasken, R. S., Chavez, F. P., and Worden, A. Z.: Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton, Proc. Natl. Acad. Sci. USA, 107, 14679–14684, 2010.
Dore, J. E. and Karl, D. M.: Nitrification in the euphotic zone as a source for nitrite, nitrate, and nitrous oxide at Station ALOHA, Limnol. Oceanogr., 41, 1619–1628, 1996a.
Dore, J. E. and Karl, D. M.: Nitrite distributions and dynamics at station ALOHA, Deep Sea Res., 43, 385–402, 1996b.
Dugdale, R. C. and Goering, J. J.: Uptake of new and regenerated forms of nitrogen in primary productivity, Limnol. Oceanogr., 12, 196–206, 1967.
Eppley, R. W., Coatswor. J., and Solorzano, L.: Studies of nitrate reductase in marine phytoplankton, Limnol. Oceanogr., 14, 194–205, 1969.
Fawcett, S. E., Lomas, M., Casey, J. R., Ward, B. B., and Sigman, D. M.: Assimilation of upwelled nitrate by small eukaryotes in the Sargasso Sea, Nat. Geosci., 4, 717–722, 2011.
Flynn, K. J., and Flynn, K.: Release of nitrite by marine dinoflagellates: development of a mathematical simulation, Mar. Biol., 130, 455–470, 1998.
Francis, C. A., Roberts, K. J., Beman, J. M., Santoro, A. E., and Oakley, B.B.: Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean, Proc. Natl. Acad. Sci. USA, 102, 14683–14688, 2005.
Glover, D. M., Jenkins, B. D., and Doney, S. C: Modeling Methods for Marine Science, Cambridge University Press, Cambridge, 2011.
Hallam, S. J., Mincer, T. J., Schleper, C., Preston, C. M., Roberts, K., Richardson, P. M., and DeLong, E. F.: Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota, PLoS Biology, 4, 520–536, 2006.
Horak, R. E. A., Qin, W., Shauer, A. J., Armbrust, E. V., Ingalls, A. E., Moffett, J. W., Stahl, D. A., and Devol, A. H.: Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by archaea, ISME J., 7, 10, 2023–2033, 2013.
Jenkins, B. D., Zehr, J. P., Gibson, A., and Campbell, L.: Cyanobacterial assimilatory nitrate reductase gene diversity in coastal and oligotrophic marine environments, Environ. Microbiol., 8, 2083–2095, 2006.
Johnson, K. S. and Coletti, L. J.: In situ ultraviolet spectrophotometry for high resolution and long-term monitoring of nitrate, bromide and bisulfide in the ocean, Deep Sea Res. I, 49, 1291–1305, 2002.
Johnson, Z. I., Zinser, E. R., Coe, A., McNulty, N. P., Woodward, E. M. S., and Chisholm, S. W.: Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients, Science, 311, 1737–1740, 2006.
Kalnay, E., Kanamitsu, M., Kistler, R., Collins, W., Deaven, D., Gandin, L., Iredell, M., Saha, S., White, G., Woollen, J., Zhu, Y., Chelliah, M., Ebisuzaki, W., Higgins, W., Janowiak, J., Mo, K.C., Ropelewski, C., Wang, J., Leetmaa, A., Reynolds, R., Jenne, R., and Joseph, D.: The NCEP/NCAR 40-year reanalysis project, B. Am. Meteorol. Soc., 77, 437–471, 1996.
Karl, D. M., Bidigare, R. R., Church, M. J., Dore, J. E., Letelier, R. M., Mahaffey, C., and Zehr, J. P.: The Nitrogen cycle in the North Pacific trades biome: An evolving paradigm, in: Nitrogen in the Marine Environment, edited by: Capone, D. G., Bronk, D. A., Mulholland, M. R., and Carpenter, E. J., 2nd Edn., Elsevier, 705–770, 2008.
Kiefer, D. A. and Kremer, J. N.: Origins of vertical patterns of phytoplankton and nutrients in the temperate, open ocean – a stratigraphic hypothesis, Deep-Sea Res. I, 28, 1087–1105, 1981.
Kiefer, D. A., Olson, R. J., and Holmhansen, O.: Another look at nitrite and chlorophyll maxima in central north Pacific, Deep-Sea Res., 23, 1199–1208, 1976.
Kirstein, K. and Bock, E.: Close genetic-relationship between Nitrobacter-hamburgensis nitrite oxidoreductase and Escherichia-coli nitrate reductases, Arch. Microbiol., 160, 447–453, 1993.
Lipschultz, F., Zafiriou, O. C., and Ball, L. A.: Seasonal fluctuations of nitrite concentrations in the deep oligotrophic ocean, Deep Sea Res., 43, 403–419, 1996.
Lomas, M. W. and Lipschultz, F.: Forming the primary nitrite maximum: Nitrifiers or phytoplankton?, Limnol. Oceanogr., 51, 2453–2467, 2006.
Luecker, S., Nowka, B., Rattei, T., Spieck, E., and Daims, H.: The genome of Nitrospina gracilis illuminates the metabolism and evolution of the major marine nitrite oxidizer, Frontiers in Microbiology, 4, 2013.
Mackey, K. R. M., Bristow, L., Parks, D. R., Altabet, M. A., Post, A. F., and Paytan, A.: The influence of light on nitrogen cycling and the primary nitrite maximum in a seasonally stratified sea, Prog. Oceanogr., 91, 545–560, 2011.
Martens-Habbena, W., Berube, P. M., Urakawa, H., de la Torre, J. R., and Stahl, D. A.: Ammonia oxidation kinetics determine niche separation of nitrifying archaea and Bacteria, Nature, 461, 976–981, 2009.
Martiny, A. C., Kathuria, S., and Berube, P. M.: Widespread metabolic potential for nitrite and nitrate assimilation among Prochlorococcus ecotypes, Proc. Natl. Acad. Sci. USA, 106, 10787–10792, 2009.
Martz, T. R., DeGrandpre, M. D., Strutton, P. G., McGillis, W. R., and Drennan, W. M.: Sea surface pCO2 and carbon export during the Labrador Sea spring-summer bloom: An in situ mass balance approach, J. Geophys. Res., 114, C09008, https://doi.org/10.1029/2008JC005060, 2009.
Mathieu, T. and Deyoung, B.: Application of a Mixed-Layer Model to the Inner Newfoundland Shelf, J. Geophys. Res., 100, 921–936, 1995.
McIlvin, M. R. and Altabet, M. A.: Chemical conversion of nitrate and nitrite to nitrous oxide for nitrogen and oxygen isotopic analysis in freshwater and seawater, Anal. Chem., 77, 5589–5595, 2005.
McIlvin, M. R. and Casciotti, K. L.: Technical updates to the bacterial method for nitrate isotopic analyses, Anal. Chem., https://doi.org/10.1021/ac1028984, 2011.
Mincer, T. J., Church, M. J., Taylor, L .T., Preston, C., Karl, D. M., and DeLong, E. F.: Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre, Environ. Microbiol., 9, 1162–1175, 2007.
Mosier, A. C. and Francis, C. A.: Determining the distribution of marine and coastal ammonia-oxidizing archaea and bacteria using a quantitative approach, Methods Enzymol., 486, 205–221, 2011.
Murray, A. E., Blakis, A., Massana, R., Strawzewski, S., Passow, U., Alldredge, A., and DeLong, E. F.: A time series assessment of planktonic archaeal variability in the Santa Barbara Channel, Aquat. Microb. Ecol., 20, 129–145, 1999.
Naqvi, S., Yoshinari, T., Jayakumar, D., Altabet, M., Narvekar, P., Devol, A., Brandes, J., and Codispoti, L.: Budgetary and biogeochemical implications of N2O isotope signatures in the Arabian Sea, Nature, 394, 462–464, 1998.
Newell, S. E., Babbin, A. R., Jayakumar, A., and Ward, B. B.: Ammonia oxidation rates and nitrification in the Arabian Sea, Global Biogeochem. Cy., 25, Gb4016, https://doi.org/10.1029/2010GB003940, 2011.
Newell, S. E., Fawcett, S. E., and Ward, B. B.: Depth distribution of ammonia oxidation rates and ammonia-oxidizer community composition in the Sargasso Sea, Limnol. Oceanogr., 58, 1491–1500, 2013.
Olson, R. J.: 15N tracer studies of the primary nitrite maximum, J. Mar. Res., 39, 203–226, 1981a.
Olson, R. J.: Differential photoinhibition of marine nitrifying bacteria: a possible mechanism for the formation of the primary nitrite maximum, J. Mar. Res., 39, 227–238, 1981b.
Paerl, R. W., Foster, R. A., Jenkins, B. D., Montoya, J. P., and Zehr, J. P.: Phylogenetic diversity of cyanobacterial narB genes from various marine habitats, Environ. Microbiol., 10, 3377–3387, 2008.
Paerl, R. W., Tozzi, S., Kolber, Z. S., and Zehr, J. P.: Variation in the abundance of Synechococcus sp. CC9311 narB mRNA relative to changes in light, nitrogen growth conditions and nitrate assimilation, J. Phycol., 48, 1028–1039, 2012.
Patey, M. D., Rijkenberg, M. J. A., Statham, P. J., Stinchcombe, M. C., Achterberg, E. P., and Mowlem, M.: Determination of nitrate and phosphate in seawater at nanomolar concentrations, Trac-Trend Anal. Chem., 27, 169–182, 2008.
Plant, J. N., Johnson, K. S., Needoba, J. A., and Coletti, L. J.: NH4-Digiscan: an in situ and laboratory ammonium analyzer for estuarine, coastal, and shelf waters, Limnol. Oceanogr.-Meth., 7, 144–156, 2009.
Plueddemann, A. J., Weller, R. A., Stramska, M., Dickey, T. D., and Marra, J.: Vertical structure of the upper ocean during the marine light-mixed layers experiment, J. Geophys. Res., 100, 6605–6619, 1995.
Price, J. F., Weller, R. A., and Pinkel, R.: Diurnal cycling – observations and models of the upper ocean response to diurnal heating,cooling, and wind mixing, J. Geophys. Res., 91, 8411–8427, 1986.
Raimbault, P., Garcia, N., and Cerutti, F.: Distribution of inorganic and organic nutrients in the South Pacific Ocean – evidence for long-term accumulation of organic matter in nitrogen-depleted waters, Biogeosciences, 5, 281–298, https://doi.org/10.5194/bg-5-281-2008, 2008
Rocap, G., Larimer, F. W., Lamerdin, J., Malfatti, S. A., Chain, P., Ahlgren, N. A., Arellano, A., Coleman, M. L., Hauser, L., Hess, W. R., Johnson, Z. I., Land, M., Lindell, D., Post, A. F., Regala, W., Shah, M., Shaw, S. L., Steglich, C., Sullivan, M. B., Ting, C. S., Tolonen, A., Webb, E. A., Zinser, E. R., and Chisholm, S. W.: Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation, Nature, 424, 1042–1047, 2003.
Sakamoto, C. M., Friederich, G. E., and Codispoti, L. A.: MBARI procedures for automated nutrient analyses using a modified Alpkem Series 300 Rapid Flow Analyzer, in: MBARI Technical Report, 90-2, (Moss Landing, CA: Monterey Bay Aquarium Research Institute), 1990.
Santoro, A. E. and Casciotti, K. L.: Enrichment and characterization of ammonia-oxidizing archaea from the open ocean: Phylogeny, physiology, and stable isotope fractionation, ISME J., 5, 1796–1808, https://doi.org/10.1038/ismej.2011.1058, 2011.
Santoro, A. E., Casciotti, K. L., and Francis, C. A.: Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current, Environ. Microbiol., 12, 1989–2006, 2010.
Sigman, D. M., Casciotti, K. L., Andreani, M., Barford, C., Galanter, M., and Bohlke, J. K.: A bacterial method for the nitrogen isotopic analysis of nitrate in seawater and freshwater, Anal. Chem., 73, 4145–4153, 2001.
Signorini, S. R., McClain, C. R., Christian, J. R., and Wong, C. S.: Seasonal and interannual variability of phytoplankton, nutrients, TCO2, pCO2), and O2) in the eastern subarctic Pacific (ocean weather station Papa), J. Geophys. Res., 106, 31197–31215, 2001.
Spieck, E., Ehrich, S., Aamand, J., and Bock, E.: Isolation and immunocytochemical location of the nitrite-oxidizing system in Nitrospira moscoviensis, Arch. Microbiol., 169, 225–230, 1998.
Su, H., Cheng, Y. F., Oswald, R., Behrendt, T., Trebs, I., Meixner, F. X., Andreae, M. O., Cheng, P., Zhang, Y., and Poschl, U.: Soil nitrite as a source of atmospheric HONO and OH radicals, Science, 333, 1616–1618, 2011.
Vaccaro, R. and Ryther, J. H.: Marine phytoplankton and the distribution of nitrite in the sea, J. Conseil Perm. Int. Expl. Mer., 25, 260–271, 1960.
Vage, K., Pickart, R. S., Moore, G. W. K., and Ribergaard, M. H.: Winter mixed layer development in the central Irminger Sea: The effect of strong, intermittent wind events, J. Phys. Oceanogr., 38, 541–565, 2008.
Venrick, E. L. and Hayward, T.L.: Determining chlorophyll on the 1984 CalCOFI surveys, Cal Coop Ocean Fish, 25, 74–79, 1984.
Wada, E. and Hattori, A.: Nitrite metabolism in euphotic layer of the central North Pacific Ocean, Limnol. Oceanogr., 16, 766–772, 1971.
Walker, C. B., de la Torre, J. R., Klotz, M. G., Urakawa, H., Pinel, N., Arp, D. J., Brochier-Armanet, C., Chain, P. S. G., Chan, P. P., and Gollabgir, A.: Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea, Proc. Natl. Acad. Sci. USA, 107, 8818–8823, 2010.
Ward, B. B.: Nitrification in aquatic environments, in: Encyclopedia of environmental microbiology, edidet by: Capone, D. G., New York, John Wiley and Sons, 2144–2167, 2002.
Ward, B. B.: Phytoplankton community composition and gene expression of functional genes involved in carbon and nitrogen assimilation, J. Phycol., 44, 1490–1503, 2008.
Ward, B. B. and Zafiriou, O. C.: Nitrification and nitric oxide in the oxygen minimum of the Eastern Tropical North Pacific, Deep Sea Res. I, 35, 1127–1142, 1988.
Ward, B. B., Olson, R. J., and Perry, M. J.: Microbial nitrification rates in the primary nitrite maximum off Southern-California, Deep Sea Res. I, 29, 247–255, 1982.
Ward, B. B., Talbot, M. C., and Perry, M.,J.: Contributions of phytoplankton and nitrifying bacteria to ammonium and nitrite dynamics in coastal waters, Cont. Shelf Res., 3, 383–398, 1984.
Zafiriou, O. C. and Mcfarland, M.: Nitric-oxide from nitrite photolysis in the central Equatorial Pacific, J. Geophys. Res.-Oc. Atmos., 86, 3173–3182, 1981.
Zafiriou, O. C. and True, M. B.: Nitrite photolysis as a source of free-radicals in productive surface waters, Geophys. Res. Lett., 6, 81–84, 1979a.
Zafiriou, O. C. and True, M. B.: Nitrite photolysis in seawater by sunlight, Mar. Chem., 8, 9–32, 1979b.
Zhang, J. Z.: Shipboard automated determination of trace concentrations of nitrite and nitrate in oligotrophic water by gas-segmented continuous flow analysis with a liquid waveguide capillary flow cell, Deep Sea Res. I, 47, 1157–1171, 2000.
Zinser, E. R., Johnson, Z. I., Coe, A., Karaca, E., Veneziano, D., and Chisholm, S. W.: Influence of light and temperature on Prochlorococcus ecotype distributions in the Atlantic Ocean, Limnol. Oceanogr., 52, 2205–2220, 2007.
Zubkov, M. V., Sleigh, M. A., Burkill, P. H., and Leakey, R. J. G.: Picoplankton community structure on the Atlantic Meridional Transect: a comparison between seasons, Prog. Oceanogr., 45, 369–386, 2000.
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