Articles | Volume 11, issue 7
https://doi.org/10.5194/bg-11-2083-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-11-2083-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
14 Apr 2014
Research article |
| 14 Apr 2014
Nitrification and its oxygen consumption along the turbid Chang Jiang River plume
S. S.-Y. Hsiao
Earth System Science Program, Taiwan International Graduate Program, Research Center for Environmental Changes, Academia Sinica, Taipei, Taiwan
T.-C. Hsu
Earth System Science Program, Taiwan International Graduate Program, Research Center for Environmental Changes, Academia Sinica, Taipei, Taiwan
J.-w. Liu
State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
X. Xie
State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
Y. Zhang
State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
J. Lin
State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
H. Wang
State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
J.-Y. T. Yang
State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
S.-C. Hsu
Earth System Science Program, Taiwan International Graduate Program, Research Center for Environmental Changes, Academia Sinica, Taipei, Taiwan
State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
S.-J. Kao
Earth System Science Program, Taiwan International Graduate Program, Research Center for Environmental Changes, Academia Sinica, Taipei, Taiwan
State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
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J. Tao, J. Gao, L. Zhang, R. Zhang, H. Che, Z. Zhang, Z. Lin, J. Jing, J. Cao, and S.-C. Hsu
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S.-C. Hsu, G.-C. Gong, F.-K. Shiah, C.-C. Hung, S.-J. Kao, R. Zhang, W.-N. Chen, C.-C. Chen, C. C.-K. Chou, Y.-C. Lin, F.-J. Lin, and S.-H. Lin
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acpd-14-21433-2014, https://doi.org/10.5194/acpd-14-21433-2014, 2014
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S.-J. Kao, R. G. Hilton, K. Selvaraj, M. Dai, F. Zehetner, J.-C. Huang, S.-C. Hsu, R. Sparkes, J. T. Liu, T.-Y. Lee, J.-Y. T. Yang, A. Galy, X. Xu, and N. Hovius
Earth Surf. Dynam., 2, 127–139, https://doi.org/10.5194/esurf-2-127-2014, https://doi.org/10.5194/esurf-2-127-2014, 2014
Y.-F. Tseng, J. Lin, M. Dai, and S.-J. Kao
Biogeosciences, 11, 409–423, https://doi.org/10.5194/bg-11-409-2014, https://doi.org/10.5194/bg-11-409-2014, 2014
A. Q. Han, M. H. Dai, J. P. Gan, S.-J. Kao, X. Z. Zhao, S. Jan, Q. Li, H. Lin, C.-T. A. Chen, L. Wang, J. Y. Hu, L. F. Wang, and F. Gong
Biogeosciences, 10, 8159–8170, https://doi.org/10.5194/bg-10-8159-2013, https://doi.org/10.5194/bg-10-8159-2013, 2013
T.-C. Hsu and S.-J. Kao
Biogeosciences, 10, 7847–7862, https://doi.org/10.5194/bg-10-7847-2013, https://doi.org/10.5194/bg-10-7847-2013, 2013
W.-D. Zhai, M.-H. Dai, B.-S. Chen, X.-H. Guo, Q. Li, S.-L. Shang, C.-Y. Zhang, W.-J. Cai, and D.-X. Wang
Biogeosciences, 10, 7775–7791, https://doi.org/10.5194/bg-10-7775-2013, https://doi.org/10.5194/bg-10-7775-2013, 2013
K.-K. Liu, L.-W. Wang, M. Dai, C.-M. Tseng, Y. Yang, C.-H. Sui, L. Oey, K.-Y. Tseng, and S.-M. Huang
Biogeosciences, 10, 7449–7462, https://doi.org/10.5194/bg-10-7449-2013, https://doi.org/10.5194/bg-10-7449-2013, 2013
C. Du, Z. Liu, M. Dai, S.-J. Kao, Z. Cao, Y. Zhang, T. Huang, L. Wang, and Y. Li
Biogeosciences, 10, 6419–6432, https://doi.org/10.5194/bg-10-6419-2013, https://doi.org/10.5194/bg-10-6419-2013, 2013
R. Zhang, J. Jing, J. Tao, S.-C. Hsu, G. Wang, J. Cao, C. S. L. Lee, L. Zhu, Z. Chen, Y. Zhao, and Z. Shen
Atmos. Chem. Phys., 13, 7053–7074, https://doi.org/10.5194/acp-13-7053-2013, https://doi.org/10.5194/acp-13-7053-2013, 2013
N. N. Chang, J. C. Shiao, G. C. Gong, S. J. Kao, and C. H. Hsieh
Biogeosciences Discuss., https://doi.org/10.5194/bgd-10-1051-2013, https://doi.org/10.5194/bgd-10-1051-2013, 2013
Revised manuscript not accepted
Related subject area
Biogeochemistry: Coastal Ocean
Responses of microbial metabolic rates to non-equilibrated silicate- versus calcium-based ocean alkalinity enhancement
High metabolic zinc demand within native Amundsen and Ross sea phytoplankton communities determined by stable isotope uptake rate measurements
The influence of zooplankton and oxygen on the particulate organic carbon flux in the Benguela Upwelling System
Reviews and syntheses: Biological indicators of low-oxygen stress in marine water-breathing animals
Temperature-enhanced effects of iron on Southern Ocean phytoplankton
Riverine nutrient impact on global ocean nitrogen cycle feedbacks and marine primary production in an Earth system model
The Northeast Greenland Shelf as a potential late-summer CO2 source to the atmosphere
Technical note: Ocean Alkalinity Enhancement Pelagic Impact Intercomparison Project (OAEPIIP)
Estimates of carbon sequestration potential in an expanding Arctic fjord (Hornsund, Svalbard) affected by dark plumes of glacial meltwater
An assessment of ocean alkalinity enhancement using aqueous hydroxides: kinetics, efficiency, and precipitation thresholds
Dissolved nitric oxide in the lower Elbe Estuary and the Port of Hamburg area
Variable contribution of wastewater treatment plant effluents to downstream nitrous oxide concentrations and emissions
Long-term variations of pH in coastal waters along the Korean Peninsula
Distribution of nutrients and dissolved organic matter in a eutrophic equatorial estuary: the Johor River and the East Johor Strait
Investigating the effect of silicate- and calcium-based ocean alkalinity enhancement on diatom silicification
Ocean alkalinity enhancement using sodium carbonate salts does not lead to measurable changes in Fe dynamics in a mesocosm experiment
Quantification and mitigation of bottom-trawling impacts on sedimentary organic carbon stocks in the North Sea
Influence of ocean alkalinity enhancement with olivine or steel slag on a coastal plankton community in Tasmania
Multi-model comparison of trends and controls of near-bed oxygen concentration on the northwest European continental shelf under climate change
Picoplanktonic methane production in eutrophic surface waters
Vertical mixing alleviates autumnal oxygen deficiency in the central North Sea
Hypoxia also occurs in small highly turbid estuaries: the example of the Charente (Bay of Biscay)
Assessing the impacts of simulated Ocean Alkalinity Enhancement on viability and growth of near-shore species of phytoplankton
Seasonality and response of ocean acidification and hypoxia to major environmental anomalies in the southern Salish Sea, North America (2014–2018)
Ocean Alkalinity Enhancement (OAE) does not cause cellular stress in a phytoplankton community of the sub-tropical Atlantic Ocean
Countering the effect of ocean acidification in coastal sediments through carbonate mineral additions
Oceanographic processes driving low-oxygen conditions inside Patagonian fjords
Above- and belowground plant mercury dynamics in a salt marsh estuary in Massachusetts, USA
Variability and drivers of carbonate chemistry at shellfish aquaculture sites in the Salish Sea, British Columbia
Unusual Hemiaulus bloom influences ocean productivity in Northeastern US Shelf waters
Insights into carbonate environmental conditions in the Chukchi Sea
UAV approaches for improved mapping of vegetation cover and estimation of carbon storage of small saltmarshes: examples from Loch Fleet, northeast Scotland
Iron “ore” nothing: benthic iron fluxes from the oxygen-deficient Santa Barbara Basin enhance phytoplankton productivity in surface waters
Marine anoxia initiates giant sulfur-oxidizing bacterial mat proliferation and associated changes in benthic nitrogen, sulfur, and iron cycling in the Santa Barbara Basin, California Borderland
Uncertainty in the evolution of northwestern North Atlantic circulation leads to diverging biogeochemical projections
The additionality problem of ocean alkalinity enhancement
Short-term variation in pH in seawaters around coastal areas of Japan: characteristics and forcings
Revisiting the applicability and constraints of molybdenum- and uranium-based paleo redox proxies: comparing two contrasting sill fjords
Influence of a small submarine canyon on biogenic matter export flux in the lower St. Lawrence Estuary, eastern Canada
Single-celled bioturbators: benthic foraminifera mediate oxygen penetration and prokaryotic diversity in intertidal sediment
Assessing impacts of coastal warming, acidification, and deoxygenation on Pacific oyster (Crassostrea gigas) farming: a case study in the Hinase area, Okayama Prefecture, and Shizugawa Bay, Miyagi Prefecture, Japan
Multiple nitrogen sources for primary production inferred from δ13C and δ15N in the southern Sea of Japan
Influence of manganese cycling on alkalinity in the redox stratified water column of Chesapeake Bay
Estuarine flocculation dynamics of organic carbon and metals from boreal acid sulfate soils
Drivers of particle sinking velocities in the Peruvian upwelling system
Impacts and uncertainties of climate-induced changes in watershed inputs on estuarine hypoxia
Considerations for hypothetical carbon dioxide removal via alkalinity addition in the Amazon River watershed
High metabolism and periodic hypoxia associated with drifting macrophyte detritus in the shallow subtidal Baltic Sea
Production and accumulation of reef framework by calcifying corals and macroalgae on a remote Indian Ocean cay
Zooplankton community succession and trophic links during a mesocosm experiment in the coastal upwelling off Callao Bay (Peru)
Laura Marín-Samper, Javier Arístegui, Nauzet Hernández-Hernández, and Ulf Riebesell
Biogeosciences, 21, 5707–5724, https://doi.org/10.5194/bg-21-5707-2024, https://doi.org/10.5194/bg-21-5707-2024, 2024
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This study exposed a natural community to two non-CO2-equilibrated ocean alkalinity enhancement (OAE) deployments using different minerals. Adding alkalinity in this manner decreases dissolved CO2, essential for photosynthesis. While photosynthesis was not suppressed, bloom formation was mildly delayed, potentially impacting marine food webs. The study emphasizes the need for further research on OAE without prior equilibration and on its ecological implications.
Riss M. Kell, Rebecca J. Chmiel, Deepa Rao, Dawn M. Moran, Matthew R. McIlvin, Tristan J. Horner, Nicole L. Schanke, Ichiko Sugiyama, Robert B. Dunbar, Giacomo R. DiTullio, and Mak A. Saito
Biogeosciences, 21, 5685–5706, https://doi.org/10.5194/bg-21-5685-2024, https://doi.org/10.5194/bg-21-5685-2024, 2024
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Despite interest in modeling the biogeochemical uptake and cycling of the trace metal zinc (Zn), measurements of Zn uptake in natural marine phytoplankton communities have not been conducted previously. To fill this gap, we employed a stable isotope uptake rate measurement method to quantify Zn uptake into natural phytoplankton assemblages within the Southern Ocean. Zn demand was high and rapid enough to depress the inventory of Zn available to phytoplankton on seasonal timescales.
Luisa Chiara Meiritz, Tim Rixen, Anja Karin van der Plas, Tarron Lamont, and Niko Lahajnar
Biogeosciences, 21, 5261–5276, https://doi.org/10.5194/bg-21-5261-2024, https://doi.org/10.5194/bg-21-5261-2024, 2024
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Moored and drifting sediment trap experiments in the northern (nBUS) and southern (sBUS) Benguela Upwelling System showed that active carbon fluxes by vertically migrating zooplankton were about 3 times higher in the sBUS than in the nBUS. Despite these large variabilities, the mean passive particulate organic carbon (POC) fluxes were almost equal in the two subsystems. The more intense near-bottom oxygen minimum layer seems to lead to higher POC fluxes and accumulation rates in the nBUS.
Michael R. Roman, Andrew H. Altieri, Denise Breitburg, Erica M. Ferrer, Natalya D. Gallo, Shin-ichi Ito, Karin Limburg, Kenneth Rose, Moriaki Yasuhara, and Lisa A. Levin
Biogeosciences, 21, 4975–5004, https://doi.org/10.5194/bg-21-4975-2024, https://doi.org/10.5194/bg-21-4975-2024, 2024
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Oxygen-depleted ocean waters have increased worldwide. In order to improve our understanding of the impacts of this oxygen loss on marine life it is essential that we develop reliable indicators that track the negative impacts of low oxygen. We review various indicators of low-oxygen stress for marine animals including their use, research needs, and application to confront the challenges of ocean oxygen loss.
Charlotte Eich, Mathijs van Manen, J. Scott P. McCain, Loay J. Jabre, Willem H. van de Poll, Jinyoung Jung, Sven B. E. H. Pont, Hung-An Tian, Indah Ardiningsih, Gert-Jan Reichart, Erin M. Bertrand, Corina P. D. Brussaard, and Rob Middag
Biogeosciences, 21, 4637–4663, https://doi.org/10.5194/bg-21-4637-2024, https://doi.org/10.5194/bg-21-4637-2024, 2024
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Phytoplankton growth in the Southern Ocean (SO) is often limited by low iron (Fe) concentrations. Sea surface warming impacts Fe availability and can affect phytoplankton growth. We used shipboard Fe clean incubations to test how changes in Fe and temperature affect SO phytoplankton. Their abundances usually increased with Fe addition and temperature increase, with Fe being the major factor. These findings imply potential shifts in ecosystem structure, impacting food webs and elemental cycling.
Miriam Tivig, David P. Keller, and Andreas Oschlies
Biogeosciences, 21, 4469–4493, https://doi.org/10.5194/bg-21-4469-2024, https://doi.org/10.5194/bg-21-4469-2024, 2024
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Marine biological production is highly dependent on the availability of nitrogen and phosphorus. Rivers are the main source of phosphorus to the oceans but poorly represented in global model oceans. We include dissolved nitrogen and phosphorus from river export in a global model ocean and find that the addition of riverine phosphorus affects marine biology on millennial timescales more than riverine nitrogen alone. Globally, riverine phosphorus input increases primary production rates.
Esdoorn Willcox, Marcos Lemes, Thomas Juul-Pedersen, Mikael Kristian Sejr, Johnna Marchiano Holding, and Søren Rysgaard
Biogeosciences, 21, 4037–4050, https://doi.org/10.5194/bg-21-4037-2024, https://doi.org/10.5194/bg-21-4037-2024, 2024
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In this work, we measured the chemistry of seawater from samples obtained from different depths and locations off the east coast of the Northeast Greenland National Park to determine what is influencing concentrations of dissolved CO2. Historically, the region has always been thought to take up CO2 from the atmosphere, but we show that it is possible for the region to become a source in late summer. We discuss the variables that may be related to such changes.
Lennart Thomas Bach, Aaron James Ferderer, Julie LaRoche, and Kai Georg Schulz
Biogeosciences, 21, 3665–3676, https://doi.org/10.5194/bg-21-3665-2024, https://doi.org/10.5194/bg-21-3665-2024, 2024
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Ocean alkalinity enhancement (OAE) is an emerging marine CO2 removal method, but its environmental effects are insufficiently understood. The OAE Pelagic Impact Intercomparison Project (OAEPIIP) provides funding for a standardized and globally replicated microcosm experiment to study the effects of OAE on plankton communities. Here, we provide a detailed manual for the OAEPIIP experiment. We expect OAEPIIP to help build scientific consensus on the effects of OAE on plankton.
Marlena Szeligowska, Déborah Benkort, Anna Przyborska, Mateusz Moskalik, Bernabé Moreno, Emilia Trudnowska, and Katarzyna Błachowiak-Samołyk
Biogeosciences, 21, 3617–3639, https://doi.org/10.5194/bg-21-3617-2024, https://doi.org/10.5194/bg-21-3617-2024, 2024
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The European Arctic is experiencing rapid regional warming, causing glaciers that terminate in the sea to retreat onto land. Due to this process, the area of a well-studied fjord, Hornsund, has increased by around 100 km2 (40%) since 1976. Combining satellite and in situ data with a mathematical model, we estimated that, despite some negative consequences of glacial meltwater release, such emerging coastal waters could mitigate climate change by increasing carbon uptake and storage by sediments.
Mallory C. Ringham, Nathan Hirtle, Cody Shaw, Xi Lu, Julian Herndon, Brendan R. Carter, and Matthew D. Eisaman
Biogeosciences, 21, 3551–3570, https://doi.org/10.5194/bg-21-3551-2024, https://doi.org/10.5194/bg-21-3551-2024, 2024
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Ocean alkalinity enhancement leverages the large surface area and carbon storage capacity of the oceans to store atmospheric CO2 as dissolved bicarbonate. We monitored CO2 uptake in seawater treated with NaOH to establish operational boundaries for carbon removal experiments. Results show that CO2 equilibration occurred on the order of weeks to months, was consistent with values expected from equilibration calculations, and was limited by mineral precipitation at high pH and CaCO3 saturation.
Riel Carlo O. Ingeniero, Gesa Schulz, and Hermann W. Bange
Biogeosciences, 21, 3425–3440, https://doi.org/10.5194/bg-21-3425-2024, https://doi.org/10.5194/bg-21-3425-2024, 2024
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Our research is the first to measure dissolved NO concentrations in temperate estuarine waters, providing insights into its distribution under varying conditions and enhancing our understanding of its production processes. Dissolved NO was supersaturated in the Elbe Estuary, indicating that it is a source of atmospheric NO. The observed distribution of dissolved NO most likely resulted from nitrification.
Weiyi Tang, Jeff Talbott, Timothy Jones, and Bess B. Ward
Biogeosciences, 21, 3239–3250, https://doi.org/10.5194/bg-21-3239-2024, https://doi.org/10.5194/bg-21-3239-2024, 2024
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Wastewater treatment plants (WWTPs) are known to be hotspots of greenhouse gas emissions. However, the impact of WWTPs on the emission of the greenhouse gas N2O in downstream aquatic environments is less constrained. We found spatially and temporally variable but overall higher N2O concentrations and fluxes in waters downstream of WWTPs, pointing to the need for efficient N2O removal in addition to the treatment of nitrogen in WWTPs.
Yong-Woo Lee, Mi-Ok Park, Seong-Gil Kim, Tae-Hoon Kim, Yong-Hwa Oh, Sang Heun Lee, and Dong Joo Joung
EGUsphere, https://doi.org/10.5194/egusphere-2024-1836, https://doi.org/10.5194/egusphere-2024-1836, 2024
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A long-term pH variation in coastal waters along the Korean peninsula was assessed for the first time, and it exhibited no significant pH change over an 11-year period. This contrasts with the ongoing pH decline in open oceans and other coastal areas. Analysis of environmental data showed that pH is mainly controlled by dissolved oxygen in bottom waters. This suggests that ocean warming could cause a pH decline in Korean coastal waters, affecting many fish and seaweeds aquaculture operations.
Amanda Y. L. Cheong, Kogila Vani Annammala, Ee Ling Yong, Yongli Zhou, Robert S. Nichols, and Patrick Martin
Biogeosciences, 21, 2955–2971, https://doi.org/10.5194/bg-21-2955-2024, https://doi.org/10.5194/bg-21-2955-2024, 2024
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We measured nutrients and dissolved organic matter for 1 year in a eutrophic tropical estuary to understand their sources and cycling. Our data show that the dissolved organic matter originates partly from land and partly from microbial processes in the water. Internal recycling is likely important for maintaining high nutrient concentrations, and we found that there is often excess nitrogen compared to silicon and phosphorus. Our data help to explain how eutrophication persists in this system.
Aaron Ferderer, Kai G. Schulz, Ulf Riebesell, Kirralee G. Baker, Zanna Chase, and Lennart T. Bach
Biogeosciences, 21, 2777–2794, https://doi.org/10.5194/bg-21-2777-2024, https://doi.org/10.5194/bg-21-2777-2024, 2024
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Ocean alkalinity enhancement (OAE) is a promising method of atmospheric carbon removal; however, its ecological impacts remain largely unknown. We assessed the effects of simulated silicate- and calcium-based mineral OAE on diatom silicification. We found that increased silicate concentrations from silicate-based OAE increased diatom silicification. In contrast, the enhancement of alkalinity had no effect on community silicification and minimal effects on the silicification of different genera.
David González-Santana, María Segovia, Melchor González-Dávila, Librada Ramírez, Aridane G. González, Leonardo J. Pozzo-Pirotta, Veronica Arnone, Victor Vázquez, Ulf Riebesell, and J. Magdalena Santana-Casiano
Biogeosciences, 21, 2705–2715, https://doi.org/10.5194/bg-21-2705-2024, https://doi.org/10.5194/bg-21-2705-2024, 2024
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In a recent experiment off the coast of Gran Canaria (Spain), scientists explored a method called ocean alkalinization enhancement (OAE), where carbonate minerals were added to seawater. This process changed the levels of certain ions in the water, affecting its pH and buffering capacity. The researchers were particularly interested in how this could impact the levels of essential trace metals in the water.
Lucas Porz, Wenyan Zhang, Nils Christiansen, Jan Kossack, Ute Daewel, and Corinna Schrum
Biogeosciences, 21, 2547–2570, https://doi.org/10.5194/bg-21-2547-2024, https://doi.org/10.5194/bg-21-2547-2024, 2024
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Seafloor sediments store a large amount of carbon, helping to naturally regulate Earth's climate. If disturbed, some sediment particles can turn into CO2, but this effect is not well understood. Using computer simulations, we found that bottom-contacting fishing gears release about 1 million tons of CO2 per year in the North Sea, one of the most heavily fished regions globally. We show how protecting certain areas could reduce these emissions while also benefitting seafloor-living animals.
Jiaying A. Guo, Robert F. Strzepek, Kerrie M. Swadling, Ashley T. Townsend, and Lennart T. Bach
Biogeosciences, 21, 2335–2354, https://doi.org/10.5194/bg-21-2335-2024, https://doi.org/10.5194/bg-21-2335-2024, 2024
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Ocean alkalinity enhancement aims to increase atmospheric CO2 sequestration by adding alkaline materials to the ocean. We assessed the environmental effects of olivine and steel slag powder on coastal plankton. Overall, slag is more efficient than olivine in releasing total alkalinity and, thus, in its ability to sequester CO2. Slag also had less environmental effect on the enclosed plankton communities when considering its higher CO2 removal potential based on this 3-week experiment.
Giovanni Galli, Sarah Wakelin, James Harle, Jason Holt, and Yuri Artioli
Biogeosciences, 21, 2143–2158, https://doi.org/10.5194/bg-21-2143-2024, https://doi.org/10.5194/bg-21-2143-2024, 2024
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This work shows that, under a high-emission scenario, oxygen concentration in deep water of parts of the North Sea and Celtic Sea can become critically low (hypoxia) towards the end of this century. The extent and frequency of hypoxia depends on the intensity of climate change projected by different climate models. This is the result of a complex combination of factors like warming, increase in stratification, changes in the currents and changes in biological processes.
Sandy E. Tenorio and Laura Farías
Biogeosciences, 21, 2029–2050, https://doi.org/10.5194/bg-21-2029-2024, https://doi.org/10.5194/bg-21-2029-2024, 2024
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Time series studies show that CH4 is highly dynamic on the coastal ocean surface and planktonic communities are linked to CH4 accumulation, as found in coastal upwelling off Chile. We have identified the crucial role of picoplankton (> 3 µm) in CH4 recycling, especially with the addition of methylated substrates (trimethylamine and methylphosphonic acid) during upwelling and non-upwelling periods. These insights improve understanding of surface ocean CH4 recycling, aiding CH4 emission estimates.
Charlotte A. J. Williams, Tom Hull, Jan Kaiser, Claire Mahaffey, Naomi Greenwood, Matthew Toberman, and Matthew R. Palmer
Biogeosciences, 21, 1961–1971, https://doi.org/10.5194/bg-21-1961-2024, https://doi.org/10.5194/bg-21-1961-2024, 2024
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Oxygen (O2) is a key indicator of ocean health. The risk of O2 loss in the productive coastal/continental slope regions is increasing. Autonomous underwater vehicles equipped with O2 optodes provide lots of data but have problems resolving strong vertical O2 changes. Here we show how to overcome this and calculate how much O2 is supplied to the low-O2 bottom waters via mixing. Bursts in mixing supply nearly all of the O2 to bottom waters in autumn, stopping them reaching ecologically low levels.
Sabine Schmidt and Ibrahima Iris Diallo
Biogeosciences, 21, 1785–1800, https://doi.org/10.5194/bg-21-1785-2024, https://doi.org/10.5194/bg-21-1785-2024, 2024
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Along the French coast facing the Bay of Biscay, the large Gironde and Loire estuaries suffer from hypoxia. This prompted a study of the small Charente estuary located between them. This work reveals a minimum oxygen zone in the Charente estuary, which extends for about 25 km. Temperature is the main factor controlling the hypoxia. This calls for the monitoring of small turbid macrotidal estuaries that are vulnerable to hypoxia, a risk expected to increase with global warming.
Jessica L. Oberlander, Mackenzie E. Burke, Cat A. London, and Hugh L. MacIntyre
EGUsphere, https://doi.org/10.5194/egusphere-2024-971, https://doi.org/10.5194/egusphere-2024-971, 2024
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OAE is a promising negative emission technology that could restore the oceanic pH and carbonate system to a pre-industrial state. To our knowledge, this paper is the first to assess the potential impact of OAE on phytoplankton through an analysis of prior studies and the effects of simulated OAE on photosynthetic competence. Our findings suggest that there may be little if any significant impact on most phytoplankton studied to date if OAE is conducted in well-flushed, near-shore environments.
Simone R. Alin, Jan A. Newton, Richard A. Feely, Samantha Siedlecki, and Dana Greeley
Biogeosciences, 21, 1639–1673, https://doi.org/10.5194/bg-21-1639-2024, https://doi.org/10.5194/bg-21-1639-2024, 2024
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We provide a new multi-stressor data product that allows us to characterize the seasonality of temperature, O2, and CO2 in the southern Salish Sea and delivers insights into the impacts of major marine heatwave and precipitation anomalies on regional ocean acidification and hypoxia. We also describe the present-day frequencies of temperature, O2, and ocean acidification conditions that cross thresholds of sensitive regional species that are economically or ecologically important.
Librada Ramírez, Leonardo J. Pozzo-Pirotta, Aja Trebec, Víctor Manzanares-Vázquez, José L. Díez, Javier Arístegui, Ulf Riebesell, Stephen D. Archer, and María Segovia
EGUsphere, https://doi.org/10.5194/egusphere-2024-847, https://doi.org/10.5194/egusphere-2024-847, 2024
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We studied the potential effects of increasing ocean alkalinity on a natural plankton community in subtropical waters of the Atlantic near Gran Canaria, Spain. Alkalinity is the capacity of water to resist acidification and plankton are usually microscopic plants (phytoplankton) and animals (zooplankton), often less than 2,5 cm in length. This study suggests that increasing ocean alkalinity did not have a significant negative impact on the studied plankton community.
Kadir Bice, Tristen Myers, George Waldbusser, and Christof Meile
EGUsphere, https://doi.org/10.5194/egusphere-2024-796, https://doi.org/10.5194/egusphere-2024-796, 2024
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We studied the effect of addition of carbonate minerals on coastal sediments, We carried out laboratory experiments to quantify the dissolution kinetics and integrated these observations into a numerical model that describes biogeochemical cycling in surficial sediments. Using the model, we demonstrate the buffering effect of the mineral additions and its duration. We quantify the effect under different environmental conditions and assess the potential for increased atmospheric CO2 uptake.
Pamela Linford, Iván Pérez-Santos, Paulina Montero, Patricio A. Díaz, Claudia Aracena, Elías Pinilla, Facundo Barrera, Manuel Castillo, Aida Alvera-Azcárate, Mónica Alvarado, Gabriel Soto, Cécile Pujol, Camila Schwerter, Sara Arenas-Uribe, Pilar Navarro, Guido Mancilla-Gutiérrez, Robinson Altamirano, Javiera San Martín, and Camila Soto-Riquelme
Biogeosciences, 21, 1433–1459, https://doi.org/10.5194/bg-21-1433-2024, https://doi.org/10.5194/bg-21-1433-2024, 2024
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The Patagonian fjords comprise a world region where low-oxygen water and hypoxia conditions are observed. An in situ dataset was used to quantify the mechanism involved in the presence of these conditions in northern Patagonian fjords. Water mass analysis confirmed the contribution of Equatorial Subsurface Water in the advection of the low-oxygen water, and hypoxic conditions occurred when the community respiration rate exceeded the gross primary production.
Ting Wang, Buyun Du, Inke Forbrich, Jun Zhou, Joshua Polen, Elsie M. Sunderland, Prentiss H. Balcom, Celia Chen, and Daniel Obrist
Biogeosciences, 21, 1461–1476, https://doi.org/10.5194/bg-21-1461-2024, https://doi.org/10.5194/bg-21-1461-2024, 2024
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The strong seasonal increases of Hg in aboveground biomass during the growing season and the lack of changes observed after senescence in this salt marsh ecosystem suggest physiologically controlled Hg uptake pathways. The Hg sources found in marsh aboveground tissues originate from a mix of sources, unlike terrestrial ecosystems, where atmospheric GEM is the main source. Belowground plant tissues mostly take up Hg from soils. Overall, the salt marsh currently serves as a small net Hg sink.
Eleanor Simpson, Debby Ianson, Karen E. Kohfeld, Ana C. Franco, Paul A. Covert, Marty Davelaar, and Yves Perreault
Biogeosciences, 21, 1323–1353, https://doi.org/10.5194/bg-21-1323-2024, https://doi.org/10.5194/bg-21-1323-2024, 2024
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Shellfish aquaculture operates in nearshore areas where data on ocean acidification parameters are limited. We show daily and seasonal variability in pH and saturation states of calcium carbonate at nearshore aquaculture sites in British Columbia, Canada, and determine the contributing drivers of this variability. We find that nearshore locations have greater variability than open waters and that the uptake of carbon by phytoplankton is the major driver of pH and saturation state variability.
S. Alejandra Castillo Cieza, Rachel H. R. Stanley, Pierre Marrec, Diana N. Fontaine, E. Taylor Crockford, Dennis J. McGillicuddy Jr., Arshia Mehta, Susanne Menden-Deuer, Emily E. Peacock, Tatiana A. Rynearson, Zoe O. Sandwith, Weifeng Zhang, and Heidi M. Sosik
Biogeosciences, 21, 1235–1257, https://doi.org/10.5194/bg-21-1235-2024, https://doi.org/10.5194/bg-21-1235-2024, 2024
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The coastal ocean in the northeastern USA provides many services, including fisheries and habitats for threatened species. In summer 2019, a bloom occurred of a large unusual phytoplankton, the diatom Hemiaulus, with nitrogen-fixing symbionts. This led to vast changes in productivity and grazing rates in the ecosystem. This work shows that the emergence of one species can have profound effects on ecosystem function. Such changes may become more prevalent as the ocean warms due to climate change.
Claudine Hauri, Brita Irving, Sam Dupont, Rémi Pagés, Donna D. W. Hauser, and Seth L. Danielson
Biogeosciences, 21, 1135–1159, https://doi.org/10.5194/bg-21-1135-2024, https://doi.org/10.5194/bg-21-1135-2024, 2024
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Arctic marine ecosystems are highly susceptible to impacts of climate change and ocean acidification. We present pH and pCO2 time series (2016–2020) from the Chukchi Ecosystem Observatory and analyze the drivers of the current conditions to get a better understanding of how climate change and ocean acidification could affect the ecological niches of organisms.
William Hiles, Lucy C. Miller, Craig Smeaton, and William E. N. Austin
Biogeosciences, 21, 929–948, https://doi.org/10.5194/bg-21-929-2024, https://doi.org/10.5194/bg-21-929-2024, 2024
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Saltmarsh soils may help to limit the rate of climate change by storing carbon. To understand their impacts, they must be accurately mapped. We use drone data to estimate the size of three saltmarshes in NE Scotland. We find that drone imagery, combined with tidal data, can reliably inform our understanding of saltmarsh size. When compared with previous work using vegetation communities, we find that our most reliable new estimates of stored carbon are 15–20 % smaller than previously estimated.
De'Marcus Robinson, Anh L. D. Pham, David J. Yousavich, Felix Janssen, Frank Wenzhöfer, Eleanor C. Arrington, Kelsey M. Gosselin, Marco Sandoval-Belmar, Matthew Mar, David L. Valentine, Daniele Bianchi, and Tina Treude
Biogeosciences, 21, 773–788, https://doi.org/10.5194/bg-21-773-2024, https://doi.org/10.5194/bg-21-773-2024, 2024
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The present study suggests that high release of ferrous iron from the seafloor of the oxygen-deficient Santa Barabara Basin (California) supports surface primary productivity, creating positive feedback on seafloor iron release by enhancing low-oxygen conditions in the basin.
David J. Yousavich, De'Marcus Robinson, Xuefeng Peng, Sebastian J. E. Krause, Frank Wenzhöfer, Felix Janssen, Na Liu, Jonathan Tarn, Franklin Kinnaman, David L. Valentine, and Tina Treude
Biogeosciences, 21, 789–809, https://doi.org/10.5194/bg-21-789-2024, https://doi.org/10.5194/bg-21-789-2024, 2024
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Declining oxygen (O2) concentrations in coastal oceans can threaten people’s ways of life and food supplies. Here, we investigate how mats of bacteria that proliferate on the seafloor of the Santa Barbara Basin sustain and potentially worsen these O2 depletion events through their unique chemoautotrophic metabolism. Our study shows how changes in seafloor microbiology and geochemistry brought on by declining O2 concentrations can help these mats grow as well as how that growth affects the basin.
Krysten Rutherford, Katja Fennel, Lina Garcia Suarez, and Jasmin G. John
Biogeosciences, 21, 301–314, https://doi.org/10.5194/bg-21-301-2024, https://doi.org/10.5194/bg-21-301-2024, 2024
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We downscaled two mid-century (~2075) ocean model projections to a high-resolution regional ocean model of the northwest North Atlantic (NA) shelf. In one projection, the NA shelf break current practically disappears; in the other it remains almost unchanged. This leads to a wide range of possible future shelf properties. More accurate projections of coastal circulation features would narrow the range of possible outcomes of biogeochemical projections for shelf regions.
Lennart Thomas Bach
Biogeosciences, 21, 261–277, https://doi.org/10.5194/bg-21-261-2024, https://doi.org/10.5194/bg-21-261-2024, 2024
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Ocean alkalinity enhancement (OAE) is a widely considered marine carbon dioxide removal method. OAE aims to accelerate chemical rock weathering, which is a natural process that slowly sequesters atmospheric carbon dioxide. This study shows that the addition of anthropogenic alkalinity via OAE can reduce the natural release of alkalinity and, therefore, reduce the efficiency of OAE for climate mitigation. However, the additionality problem could be mitigated via a variety of activities.
Tsuneo Ono, Daisuke Muraoka, Masahiro Hayashi, Makiko Yorifuji, Akihiro Dazai, Shigeyuki Omoto, Takehiro Tanaka, Tomohiro Okamura, Goh Onitsuka, Kenji Sudo, Masahiko Fujii, Ryuji Hamanoue, and Masahide Wakita
Biogeosciences, 21, 177–199, https://doi.org/10.5194/bg-21-177-2024, https://doi.org/10.5194/bg-21-177-2024, 2024
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We carried out parallel year-round observations of pH and related parameters in five stations around the Japan coast. It was found that short-term acidified situations with Omega_ar less than 1.5 occurred at four of five stations. Most of such short-term acidified events were related to the short-term low salinity event, and the extent of short-term pH drawdown at high freshwater input was positively correlated with the nutrient concentration of the main rivers that flow into the coastal area.
K. Mareike Paul, Martijn Hermans, Sami A. Jokinen, Inda Brinkmann, Helena L. Filipsson, and Tom Jilbert
Biogeosciences, 20, 5003–5028, https://doi.org/10.5194/bg-20-5003-2023, https://doi.org/10.5194/bg-20-5003-2023, 2023
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Seawater naturally contains trace metals such as Mo and U, which accumulate under low oxygen conditions on the seafloor. Previous studies have used sediment Mo and U contents as an archive of changing oxygen concentrations in coastal waters. Here we show that in fjords the use of Mo and U for this purpose may be impaired by additional processes. Our findings have implications for the reliable use of Mo and U to reconstruct oxygen changes in fjords.
Hannah Sharpe, Michel Gosselin, Catherine Lalande, Alexandre Normandeau, Jean-Carlos Montero-Serrano, Khouloud Baccara, Daniel Bourgault, Owen Sherwood, and Audrey Limoges
Biogeosciences, 20, 4981–5001, https://doi.org/10.5194/bg-20-4981-2023, https://doi.org/10.5194/bg-20-4981-2023, 2023
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We studied the impact of submarine canyon processes within the Pointe-des-Monts system on biogenic matter export and phytoplankton assemblages. Using data from three oceanographic moorings, we show that the canyon experienced two low-amplitude sediment remobilization events in 2020–2021 that led to enhanced particle fluxes in the deep-water column layer > 2.6 km offshore. Sinking phytoplankton fluxes were lower near the canyon compared to background values from the lower St. Lawrence Estuary.
Dewi Langlet, Florian Mermillod-Blondin, Noémie Deldicq, Arthur Bauville, Gwendoline Duong, Lara Konecny, Mylène Hugoni, Lionel Denis, and Vincent M. P. Bouchet
Biogeosciences, 20, 4875–4891, https://doi.org/10.5194/bg-20-4875-2023, https://doi.org/10.5194/bg-20-4875-2023, 2023
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Benthic foraminifera are single-cell marine organisms which can move in the sediment column. They were previously reported to horizontally and vertically transport sediment particles, yet the impact of their motion on the dissolved fluxes remains unknown. Using microprofiling, we show here that foraminiferal burrow formation increases the oxygen penetration depth in the sediment, leading to a change in the structure of the prokaryotic community.
Masahiko Fujii, Ryuji Hamanoue, Lawrence Patrick Cases Bernardo, Tsuneo Ono, Akihiro Dazai, Shigeyuki Oomoto, Masahide Wakita, and Takehiro Tanaka
Biogeosciences, 20, 4527–4549, https://doi.org/10.5194/bg-20-4527-2023, https://doi.org/10.5194/bg-20-4527-2023, 2023
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This is the first study of the current and future impacts of climate change on Pacific oyster farming in Japan. Future coastal warming and acidification may affect oyster larvae as a result of longer exposure to lower-pH waters. A prolonged spawning period may harm oyster processing by shortening the shipping period and reducing oyster quality. To minimize impacts on Pacific oyster farming, in addition to mitigation measures, local adaptation measures may be required.
Taketoshi Kodama, Atsushi Nishimoto, Ken-ichi Nakamura, Misato Nakae, Naoki Iguchi, Yosuke Igeta, and Yoichi Kogure
Biogeosciences, 20, 3667–3682, https://doi.org/10.5194/bg-20-3667-2023, https://doi.org/10.5194/bg-20-3667-2023, 2023
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Carbon and nitrogen are essential elements for organisms; their stable isotope ratios (13C : 12C, 15N : 14N) are useful tools for understanding turnover and movement in the ocean. In the Sea of Japan, the environment is rapidly being altered by human activities. The 13C : 12C of small organic particles is increased by active carbon fixation, and phytoplankton growth increases the values. The 15N : 14N variations suggest that nitrates from many sources contribute to organic production.
Aubin Thibault de Chanvalon, George W. Luther, Emily R. Estes, Jennifer Necker, Bradley M. Tebo, Jianzhong Su, and Wei-Jun Cai
Biogeosciences, 20, 3053–3071, https://doi.org/10.5194/bg-20-3053-2023, https://doi.org/10.5194/bg-20-3053-2023, 2023
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The intensity of the oceanic trap of CO2 released by anthropogenic activities depends on the alkalinity brought by continental weathering. Between ocean and continent, coastal water and estuaries can limit or favour the alkalinity transfer. This study investigate new interactions between dissolved metals and alkalinity in the oxygen-depleted zone of estuaries.
Joonas J. Virtasalo, Peter Österholm, and Eero Asmala
Biogeosciences, 20, 2883–2901, https://doi.org/10.5194/bg-20-2883-2023, https://doi.org/10.5194/bg-20-2883-2023, 2023
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We mixed acidic metal-rich river water from acid sulfate soils and seawater in the laboratory to study the flocculation of dissolved metals and organic matter in estuaries. Al and Fe flocculated already at a salinity of 0–2 to large organic flocs (>80 µm size). Precipitation of Al and Fe hydroxide flocculi (median size 11 µm) began when pH exceeded ca. 5.5. Mn transferred weakly to Mn hydroxides and Co to the flocs. Up to 50 % of Cu was associated with the flocs, irrespective of seawater mixing.
Moritz Baumann, Allanah Joy Paul, Jan Taucher, Lennart Thomas Bach, Silvan Goldenberg, Paul Stange, Fabrizio Minutolo, and Ulf Riebesell
Biogeosciences, 20, 2595–2612, https://doi.org/10.5194/bg-20-2595-2023, https://doi.org/10.5194/bg-20-2595-2023, 2023
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The sinking velocity of marine particles affects how much atmospheric CO2 is stored inside our oceans. We measured particle sinking velocities in the Peruvian upwelling system and assessed their physical and biochemical drivers. We found that sinking velocity was mainly influenced by particle size and porosity, while ballasting minerals played only a minor role. Our findings help us to better understand the particle sinking dynamics in this highly productive marine system.
Kyle E. Hinson, Marjorie A. M. Friedrichs, Raymond G. Najjar, Maria Herrmann, Zihao Bian, Gopal Bhatt, Pierre St-Laurent, Hanqin Tian, and Gary Shenk
Biogeosciences, 20, 1937–1961, https://doi.org/10.5194/bg-20-1937-2023, https://doi.org/10.5194/bg-20-1937-2023, 2023
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Climate impacts are essential for environmental managers to consider when implementing nutrient reduction plans designed to reduce hypoxia. This work highlights relative sources of uncertainty in modeling regional climate impacts on the Chesapeake Bay watershed and consequent declines in bay oxygen levels. The results demonstrate that planned water quality improvement goals are capable of reducing hypoxia levels by half, offsetting climate-driven impacts on terrestrial runoff.
Linquan Mu, Jaime B. Palter, and Hongjie Wang
Biogeosciences, 20, 1963–1977, https://doi.org/10.5194/bg-20-1963-2023, https://doi.org/10.5194/bg-20-1963-2023, 2023
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Enhancing ocean alkalinity accelerates carbon dioxide removal from the atmosphere. We hypothetically added alkalinity to the Amazon River and examined the increment of the carbon uptake by the Amazon plume. We also investigated the minimum alkalinity addition in which this perturbation at the river mouth could be detected above the natural variability.
Karl M. Attard, Anna Lyssenko, and Iván F. Rodil
Biogeosciences, 20, 1713–1724, https://doi.org/10.5194/bg-20-1713-2023, https://doi.org/10.5194/bg-20-1713-2023, 2023
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Aquatic plants produce a large amount of organic matter through photosynthesis that, following erosion, is deposited on the seafloor. In this study, we show that plant detritus can trigger low-oxygen conditions (hypoxia) in shallow coastal waters, making conditions challenging for most marine animals. We propose that the occurrence of hypoxia may be underestimated because measurements typically do not consider the region closest to the seafloor, where detritus accumulates.
M. James McLaughlin, Cindy Bessey, Gary A. Kendrick, John Keesing, and Ylva S. Olsen
Biogeosciences, 20, 1011–1026, https://doi.org/10.5194/bg-20-1011-2023, https://doi.org/10.5194/bg-20-1011-2023, 2023
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Coral reefs face increasing pressures from environmental change at present. The coral reef framework is produced by corals and calcifying algae. The Kimberley region of Western Australia has escaped land-based anthropogenic impacts. Specimens of the dominant coral and algae were collected from Browse Island's reef platform and incubated in mesocosms to measure calcification and production patterns of oxygen. This study provides important data on reef building and climate-driven effects.
Patricia Ayón Dejo, Elda Luz Pinedo Arteaga, Anna Schukat, Jan Taucher, Rainer Kiko, Helena Hauss, Sabrina Dorschner, Wilhelm Hagen, Mariona Segura-Noguera, and Silke Lischka
Biogeosciences, 20, 945–969, https://doi.org/10.5194/bg-20-945-2023, https://doi.org/10.5194/bg-20-945-2023, 2023
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Ocean upwelling regions are highly productive. With ocean warming, severe changes in upwelling frequency and/or intensity and expansion of accompanying oxygen minimum zones are projected. In a field experiment off Peru, we investigated how different upwelling intensities affect the pelagic food web and found failed reproduction of dominant zooplankton. The changes projected could severely impact the reproductive success of zooplankton communities and the pelagic food web in upwelling regions.
Cited articles
Andersson, M. G. I., Brion, N., and Middelburg, J. J.: Comparison of nitrifier activity versus growth in the Scheldt estuary – a turbid, tidal estuary in northern Europe, Aquat. Microb. Ecol., 42, 149–158, 2006.
Bano, N. and Hollibaugh, J. T.: Diversity and distribution of DNA sequences with affinity to ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in the Arctic Ocean, Appl. Environ. Microbiol., 66, 1960–1969, 2000.
Belser, L. W.: Population Ecology of Nitrifying Bacteria, Annu. Rev. Microbiol., 33, 309–333, 1979.
Berounsky, V. M. and Nixon, S. W.: Rates of Nitrification Along an Estuarine Gradient in Narragansett Bay, Estuaries, 16, 718–730, 1993.
Bianchi, M., Feliatra, and Lefevre, D.: Regulation of nitrification in the land-ocean contact area of the Rhone River plume (NW Mediterranean), Aquat. Microb. Ecol., 18, 301–312, 1999.
Brion, N., Billen, G., Guezennec, L., and Ficht, A.: Distribution of nitrifying activity in the Seine River (France) from Paris to the estuary, Estuaries, 23, 669–682, 2000.
Bronk, D. A., Lomas, M. W., Glibert, P. M., Schukert, K. J., and Sanderson, M. P.: Total dissolved nitrogen analysis: comparisons between the persulfate, UV and high temperature oxidation methods, Mar. Chem., 69, 163–178, 2000.
Casciotti, K. L., Sigman, D. M., Hastings, M. G., Bohlke, J. K., and Hilkert, A.: Measurement of the oxygen isotopic composition of nitrate in seawater and freshwater using the denitrifier method, Anal. Chem., 74, 4905–4912, 2002.
Cebron, A., Berthe, T., and Garnier, J.: Nitrification and nitrifying bacteria in the lower Seine River and estuary (France), Appl. Environ. Microbiol., 69, 7091–7100, 2003.
Chai, C., Yu, Z. M., Shen, Z. L., Song, X. X., Cao, X. H., and Yao, Y.: Nutrient characteristics in the Yangtze River Estuary and the adjacent East China Sea before and after impoundment of the Three Gorges Dam, Sci. Total Environ., 407, 4687–4695, 2009.
Chen, C. C., Shiah, F. K., Chiang, K. P., Gong, G. C., and Kemp, W. M.: Effects of the Changjiang (Yangtze) River discharge on planktonic community respiration in the East China Sea, J. Geophys. Res.-Oceans, 114, C03005, https://doi.org/10.1029/2008JC004891, 2009.
Chen, Z., Li, J., Shen, H., and Wang, Z.: Changjiang of China: historical analysis of discharge variability and sediment flux, Geomorphology, 41, 77–91, 2001.
Clement, J. C., Shrestha, J., Ehrenfeld, J. G., and Jaffe, P. R.: Ammonium oxidation coupled to dissimilatory reduction of iron under anaerobic conditions in wetland soils, Soil Biol. Biochem., 37, 2323–2328, 2005.
Cooper, A. B.: Activities of Benthic Nitrifiers in Streams and Their Role in Oxygen-Consumption, Microbiol. Ecol., 10, 317–334, 1984.
Dai, M., Wang, L., Guo, X., Zhai, W., Li, Q., He, B., and Kao, S.-J.: Nitrification and inorganic nitrogen distribution in a large perturbed river/estuarine system: the Pearl River Estuary, China, Biogeosciences, 5, 1227–1244, https://doi.org/10.5194/bg-5-1227-2008, 2008.
Dai, Z. J., Du, J. Z., Zhang, X. L., Su, N., and Li, J. F.: Variation of Riverine Material Loads and Environmental Consequences on the Changjiang (Yangtze) Estuary in Recent Decades (1955–2008), Environ. Sci. Technol., 45, 223–227, 2011.
Freitag, T. E. and Prosser, J. I.: Differences between betaproteobacterial ammonia-oxidizing communities in marine sediments and those in overlying water, Appl. Environ. Microbiol., 70, 3789–3793, 2004.
Fussel, J., Lam, P., Lavik, G., Jensen, M. M., Holtappels, M., Gunter, M., and Kuypers, M. M.: Nitrite oxidation in the Namibian oxygen minimum zone, Isme J., 6, 1200–1209, 2012.
Galand, P. E., Lovejoy, C., Pouliot, J., and Vincent, W. F.: Heterogeneous archaeal communities in the particle-rich environment of an arctic shelf ecosystem, J. Mar. Syst., 74, 774–782, 2008.
Galloway, J. N., Dentener, F. J., Capone, D. G., Boyer, E. W., Howarth, R. W., Seitzinger, S. P., Asner, G. P., Cleveland, C. C., Green, P. A., Holland, E. A., Karl, D. M., Michaels, A. F., Porter, J. H., Townsend, A. R., and Vorosmarty, C. J.: Nitrogen cycles: past, present, and future, Biogeochemistry, 70, 153–226, 2004.
Garnier, J., Cebron, A., Tallec, G., Billen, G., Sebilo, M., and Martinez, A.: Nitrogen behaviour and nitrous oxide emission in the tidal Seine River estuary (France) as influenced by human activities in the upstream watershed, Biogeochemistry, 77, 305–326, 2006.
Gazeau, F., Gattuso, J. P., Middelburg, J. J., Brion, N., Schiettecatte, L. S., Frankignoulle, M., and Borges, A. V.: Planktonic and whole system metabolism in a nutrient-rich estuary (the Scheldt estuary), Estuaries, 28, 868–883, 2005.
Grundle, D. S., and Juniper, S. K.: Nitrification from the lower euphotic zone to the sub-oxic waters of a highly productive British Columbia fjord, Mar. Chem., 126, 173–181, 2011.
Gunnarsson, J., Bjork, M., Gilek, M., Granberg, M., and Rosenberg, R.: Effects of eutrophication on contaminant cycling in marine benthic systems, Ambio, 29, 252–259, 2000.
Helder, W. and Devries, R. T. P.: Estuarine Nitrite Maxima and Nitrifying Bacteria (Ems-Dollard Estuary), Neth. J. Sea Res., 17, 1–18, 1983.
Hollibaugh, J. T., Bano, N., and Ducklow, H. W.: Widespread distribution in polar oceans of a 16S rRNA gene sequence with affinity to Nitrosospira-like ammonia-oxidizing bacteria, Appl. Environ. Microbiol., 68, 1478–1484, 2002.
Howarth, R. W. and Marino, R.: Nitrogen as the limiting nutrient for eutrophication in coastal marine ecosystems: Evolving views over three decades, Limnol. Oceanogr., 51, 364–376, 2006.
Hsu, S. C., Liu, S. C., Lin, C. Y., Hsu, R. T., Huang, Y. T., and Chen, Y. W.: Metal compositions of PM10 and PM2.5 aerosols in Taipei during spring, 2002, Terr. Atmos. Ocean. Sci., 15, 925–948, 2004.
Hu, A. Y., Jiao, N. Z., and Zhang, C. L. L.: Community Structure and Function of Planktonic Crenarchaeota: Changes with Depth in the South China Sea, Microbiol. Ecol., 62, 549–563, 2011.
Hu, X. P. and Cai, W. J.: An assessment of ocean margin anaerobic processes on oceanic alkalinity budget, Global Biogeochem. Cy., 25, GB3003, https://doi.org/10.1029/2010GB003859, 2011.
Huertadiaz, M. A. and Morse, J. W.: A Quantitative Method for Determination of Trace-Metal Concentrations in Sedimentary Pyrite, Mar. Chem., 29, 119–144, 1990.
Hulth, S., Aller, R. C., and Gilbert, F.: Coupled anoxic nitrification manganese reduction in marine sediments, Geochim. Cosmochim. Ac., 63, 49–66, 1999.
Kao, S. J., Horng, C. S., Roberts, A. P., and Liu, K. K.: Carbon-sulfur-iron relationships in sedimentary rocks from southwestern Taiwan: influence of geochemical environment on greigite and pyrrhotite formation, Chem. Geol., 203, 153–168, 2004.
Kao, S. J., Yang, J. Y. T., Liu, K. K., Dai, M. H., Chou, W. C., Lin, H. L., and Ren, H. J.: Isotope constraints on particulate nitrogen source and dynamics in the upper water column of the oligotrophic South China Sea, Global Biogeochem. Cy., 26, GB2033, https://doi.org/10.1029/2011GB004091, 2012.
Knapp, A. N., Sigman, D. M., Lipschultz, F., Kustka, A. B., and Capone, D. G.: Interbasin isotopic correspondence between upper-ocean bulk DON and subsurface nitrate and its implications for marine nitrogen cycling, Global Biogeochem. Cy., 25, GB4004, https://doi.org/10.1029/2010GB003878, 2011.
Lara-Lara, J. R., Frey, B. E., and Small, L. F.: Primary Production in the Columbia River Estuary I. Spatial and Temporal Variability of Properties!, Pacific Sci., 44, 17–37, 1990.
Lipschultz, F., Wofsy, S. C., and Fox, L. E.: Nitrogen-Metabolism of the Eutrophic Delaware River Ecosystem, Limnol. Oceanogr., 31, 701–716, 1986.
Luther, G. W. and Popp, J. I.: Kinetics of the abiotic reduction of polymeric manganese dioxide by nitrite: An anaerobic nitrification reaction, Aquat. Geochem., 8, 15–36, 2002.
Luther, G. W., Sundby, B., Lewis, B. L., Brendel, P. J., and Silverberg, N.: Interactions of manganese with the nitrogen cycle: Alternative pathways to dinitrogen, Geochim. Cosmochim. Ac., 61, 4043–4052, 1997.
Mackey, K. R. M., Bristow, L., Parks, D. R., Altabet, M. A., Post, A. F., and Paytan, A.: The influence of light on nitrogen cycling and the primary nitrite maximum in a seasonally stratified sea, Progr. Oceanogr., 91, 545–560, 2011.
Merbt, S. N., Stahl, D. A., Casamayor, E. O., Marti, E., Nicol, G. W., and Prosser, J. I.: Differential photoinhibition of bacterial and archaeal ammonia oxidation, FEMS Microbiol. Lett., 327, 41–46, 2012.
Milliman, J. D., and Syvitski, J. P. M.: Geomorphic Tectonic Control of Sediment Discharge to the Ocean – the Importance of Small Mountainous Rivers, J Geol, 100, 525–544, 1992.
Ning, X., Lin, C., Su, J., Liu, C., Hao, Q., and Le, F.: Long-term changes of dissolved oxygen, hypoxia, and the responses of the ecosystems in the East China Sea from 1975 to 1995, J. Oceanogr., 67, 59–75, 2011.
Off, S., Alawi, M., and Spieck, E.: Enrichment and Physiological Characterization of a Novel Nitrospira-Like Bacterium Obtained from a Marine Sponge, Appl. Environ. Microbiol., 76, 4640–4646, 2010.
O'Mullan, G. D. and Ward, B. B.: Relationship of temporal and spatial variabilities of ammonia-oxidizing bacteria to nitrification rates in Monterey Bay, California, Appl. Environ. Microbiol., 71, 697–705, 2005.
Owens, N. J. P.: Estuarine Nitrification – a Naturally-Occurring Fluidized-Bed Reaction, Estuar. Coast Shelf. S., 22, 31–44, 1986.
Pai, S. C., Tsau, Y. J., and Yang, T. I.: pH and buffering capacity problems involved in the determination of ammonia in saline water using the indophenol blue spectrophotometric method, Anal. Chim. Acta, 434, 209–216, 2001.
Pakulski, J. D., Benner, R., Amon, R., Eadie, B., and Whitledge, T.: Community Metabolism and Nutrient Cycling in the Mississippi River Plume – Evidence for Intense Nitrification at Intermediate Salinities, Mar. Ecol.-Prog. Ser., 117, 207–218, 1995.
Phillips, C. J., Smith, Z., Embley, T. M., and Prosser, J. I.: Phylogenetic differences between particle-associated and planktonic ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in the northwestern Mediterranean Sea, Appl. Environ. Microbiol., 65, 779–786, 1999.
Rabalais, N. N., Turner, R. E., and Wiseman, W. J.: Gulf of Mexico hypoxia, aka "The dead zone", Annu. Rev. Ecol. Syst., 33, 235–263, 2002.
Ravishankara, A. R., Daniel, J. S., and Portmann, R. W.: Nitrous Oxide (N2O): The Dominant Ozone-Depleting Substance Emitted in the 21st Century, Science, 326, 123–125, 2009.
Redfield, A. C., Ketchum, B. H., and Richards, F. A.: The Influence of Organism on the Composition of Sea Water, in: The sea, edited by: Hill, M. N., Wiley-Interscience, New York, 26–77, 1963.
Rysgaard, S., Thastum, P., Dalsgaard, T., Christensen, P. B., and Sloth, N. P.: Effects of salinity on NH4+ adsorption capacity, nitrification, and denitrification in Danish estuarine sediments, Estuaries, 22, 21–30, 1999.
Santoro, A. E., Sakamoto, C. M., Smith, J. M., Plant, J. N., Gehman, A. L., Worden, A. Z., Johnson, K. S., Francis, C. A., and Casciotti, K. L.: Measurements of nitrite production in and around the primary nitrite maximum in the central California Current, Biogeosciences, 10, 7395–7410, https://doi.org/10.5194/bg-10-7395-2013, 2013.
Seitzinger, S. P., Nixon, S. W., and Pilson, M. E. Q.: Denitrification and Nitrous-Oxide Production in a Coastal Marine Ecosystem, Limnol. Oceanogr., 29, 73–83, 1984.
Seitzinger, S. P.: Nitrogen Biogeochemistry in an Unpolluted Estuary – the Importance of Benthic Denitrification, Mar. Ecol.-Prog. Ser., 41, 177–186, 1987.
Sigman, D. M., Casciotti, K. L., Andreani, M., Barford, C., Galanter, M., and Bohlke, J. K.: A bacterial method for the nitrogen isotopic analysis of nitrate in seawater and freshwater, Anal. Chem., 73, 4145–4153, 2001.
Smith, V. H., Joye, S. B., and Howarth, R. W.: Eutrophication of freshwater and marine ecosystems, Limnol. Oceanogr., 51, 351–355, 2006.
Somville, M.: Use of nitrifying activity measurements for describing the effect of salinity on nitrification in the Scheldt Estuary, Appl. Environ. Microb., 47, 424–426, 1984.
Syvitski, J. P. M., Vorosmarty, C. J., Kettner, A. J., and Green, P.: Impact of humans on the flux of terrestrial sediment to the global coastal ocean, Science, 308, 376–380, 2005.
Tseng, Y.-F., Lin, J., Dai, M., and Kao, S.-J.: Joint effect of freshwater plume and coastal upwelling on phytoplankton growth off the Changjiang River, Biogeosciences, 11, 409–423, https://doi.org/10.5194/bg-11-409-2014, 2014.
Vandenabeele, J., Vandewoestyne, M., Houwen, F., Germonpre, R., Vandesande, D., and Verstraete, W.: Role of Autotrophic Nitrifiers in Biological Manganese Removal from Groundwater Containing Manganese and Ammonium, Microbiol. Ecol., 29, 83–98, 1995.
Wang, B. D.: Hydromorphological mechanisms leading to hypoxia off the Changjiang estuary, Mar. Environ. Res., 67, 53–58, 2009.
Wang, B. D., Wei, Q. S., Chen, J. F., and Xie, L. P.: Annual cycle of hypoxia off the Changjiang (Yangtze River) Estuary, Mar. Environ. Res., 77, 1–5, 2012.
Wang, H. Y., Shen, Z. Y., Guo, X. J., Niu, J. F., and Kang, B.: Ammonia adsorption and nitritation in sediments derived from the Three Gorges Reservoir, China, Environ. Earth Sci., 60, 1653–1660, 2010.
Wei, H., He, Y. C., Li, Q. J., Liu, Z. Y., and Wang, H. T.: Summer hypoxia adjacent to the Changjiang Estuary, J. Mar. Syst., 67, 292–303, 2007.
Woebken, D., Fuchs, B. M., Kuypers, M. M. M., and Amann, R.: Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system, Appl. Environ. Microbiol., 73, 4648–4657, 2007.
Wuchter, C., Abbas, B., Coolen, M. J. L., Herfort, L., van Bleijswijk, J., Timmers, P., Strous, M., Teira, E., Herndl, G. J., Middelburg, J. J., Schouten, S., and Damste, J. S. S.: Archaeal nitrification in the ocean, P. Natl. Acad. Sci. USA, 103, 12317–12322, 2006.
Xia, X. H., Yang, Z. F., and Zhang, X. Q.: Effect of Suspended-Sediment Concentration on Nitrification in River Water: Importance of Suspended Sediment-Water Interface, Environ. Sci. Technol., 43, 3681–3687, 2009.
Yoon, W. B. and Benner, R.: Denitrification and Oxygen-Consumption in Sediments of 2 South Texas Estuaries, Mar. Ecol.-Prog. Ser., 90, 157–167, 1992.
Zhou, F., Xuan, J. L., Ni, X. B., and Huang, D. J.: A preliminary study of variations of the Changjiang Diluted Water between August of 1999 and 2006, Acta Oceanol. Sin., 28, 1–11, 2009.
Zhu, Z. Y., Zhang, J., Wu, Y., Zhang, Y. Y., Lin, J., and Liu, S. M.: Hypoxia off the Changjiang (Yangtze River) Estuary: Oxygen depletion and organic matter decomposition, Mar. Chem., 125, 108–116, 2011.
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