Articles | Volume 13, issue 17
https://doi.org/10.5194/bg-13-4899-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Special issue:
https://doi.org/10.5194/bg-13-4899-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
06 Sep 2016
Research article |
| 06 Sep 2016
Source, transport and fate of soil organic matter inferred from microbial biomarker lipids on the East Siberian Arctic Shelf
Juliane Bischoff
CORRESPONDING AUTHOR
School of Civil Engineering and Geosciences, Newcastle University, Newcastle upon Tyne, UK
now at: The Lyell Centre, Heriot-Watt University, Edinburgh, UK
Robert B. Sparkes
School of Earth and Environmental Sciences and Williamson Research Centre for Molecular Environmental Science, University of Manchester, Manchester, UK
now at: School of Science and the Environment, Manchester Metropolitan University, Manchester, UK
Ayça Doğrul Selver
School of Earth and Environmental Sciences and Williamson Research Centre for Molecular Environmental Science, University of Manchester, Manchester, UK
Balıkesir University, Geological Engineering Department, Balıkesir, Turkey
Robert G. M. Spencer
Earth, Ocean and Atmospheric Science, Florida State University, Tallahassee, FL, USA
Örjan Gustafsson
Department of Environmental Science and Analytical Chemistry (ACES) and the Bolin Centre for Climate Research, Stockholm University, Stockholm, Sweden
Igor P. Semiletov
Pacific Oceanological Institute, Far Eastern Branch of the Russian Academy of Sciences, Vladivostok, Russia
International Arctic Research Center, University of Alaska, Fairbanks, USA
National Tomsk Research Polytechnic University, Tomsk, Russia
Oleg V. Dudarev
International Arctic Research Center, University of Alaska, Fairbanks, USA
National Tomsk Research Polytechnic University, Tomsk, Russia
Dirk Wagner
GFZ German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section 5.3 Geomicrobiology, Telegrafenberg, Potsdam, Germany
Elizaveta Rivkina
Institute of Physicochemical and Biological Problems in Soil Science, Russian Academy of Sciences, Pushchino, Russia
Bart E. van Dongen
School of Earth and Environmental Sciences and Williamson Research Centre for Molecular Environmental Science, University of Manchester, Manchester, UK
Helen M. Talbot
School of Civil Engineering and Geosciences, Newcastle University, Newcastle upon Tyne, UK
Related authors
James F. Spray, Thomas Wagner, Juliane Bischoff, Sara Trojahn, Sevda Norouzi, Walter Hill, Julian Brasche, Leroy James, and Ryan Pereira
Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-92, https://doi.org/10.5194/bg-2021-92, 2021
Manuscript not accepted for further review
Short summary
Short summary
Sunlight and microbial activity break down river dissolved organic matter (DOM), releasing greenhouse gases, but are poorly understood in tropical headwaters. We incubated water in light and darkness, using novel methods to quantify changes in DOM concentration and character. Light removed up to 9 % of DOM, but microbial activity had a varied response. Importantly, light affected DOM compounds considered photo-resistant; likewise microbial activity degraded compounds thought to be bio-resistant.
Amy D. Holt, Jason B. Fellman, Anne M. Kellerman, Eran Hood, Samantha H. Bosman, Amy M. McKenna, Jeffery P. Chanton, and Robert G. M. Spencer
EGUsphere, https://doi.org/10.5194/egusphere-2024-3636, https://doi.org/10.5194/egusphere-2024-3636, 2024
Short summary
Short summary
Glacier runoff is a source of old, bioavailable dissolved organic carbon (DOC) to downstream ecosystems. The DOC pool is composed of material of various origin, chemical character, age and bioavailability. Using bioincubation experiments we show glacier DOC bioavailability is driven by a young source, rather than ancient material which comprises the majority of the glacier carbon pool. This young, bioavailable fraction could currently be a critical carbon subsidy for recipient food webs.
Krishnakant Budhavant, Mohanan Remani Manoj, Hari Ram Chandrika Rajendran Nair, Samuel Mwaniki Gaita, Henry Holmstrand, Abdus Salam, Ahmed Muslim, Sreedharan Krishnakumari Satheesh, and Örjan Gustafsson
Atmos. Chem. Phys., 24, 11911–11925, https://doi.org/10.5194/acp-24-11911-2024, https://doi.org/10.5194/acp-24-11911-2024, 2024
Short summary
Short summary
The South Asian Pollution Experiment 2018 used access to three strategically located receptor observatories. Observational constraints revealed opposing trends in the mass absorption cross sections of black carbon (BC MAC) and brown carbon (BrC MAC) during long-range transport. Models estimating the climate effects of BC aerosols may have underestimated the ambient BC MAC over distant receptor areas, leading to discrepancies in aerosol absorption predicted by observation-constrained models.
Leonard Kirago, Örjan Gustafsson, Samuel Mwaniki Gaita, Sophie L. Haslett, Michael J. Gatari, Maria Elena Popa, Thomas Röckmann, Christoph Zellweger, Martin Steinbacher, Jörg Klausen, Christian Félix, David Njiru, and August Andersson
Atmos. Chem. Phys., 23, 14349–14357, https://doi.org/10.5194/acp-23-14349-2023, https://doi.org/10.5194/acp-23-14349-2023, 2023
Short summary
Short summary
This study provides ground-observational evidence that supports earlier suggestions that savanna fires are the main emitters and modulators of carbon monoxide gas in Africa. Using isotope-based techniques, the study has shown that about two-thirds of this gas is emitted from savanna fires, while for urban areas, in this case Nairobi, primary sources approach 100 %. The latter has implications for air quality policy, suggesting primary emissions such as traffic should be targeted.
Christoph Heinze, Thorsten Blenckner, Peter Brown, Friederike Fröb, Anne Morée, Adrian L. New, Cara Nissen, Stefanie Rynders, Isabel Seguro, Yevgeny Aksenov, Yuri Artioli, Timothée Bourgeois, Friedrich Burger, Jonathan Buzan, B. B. Cael, Veli Çağlar Yumruktepe, Melissa Chierici, Christopher Danek, Ulf Dieckmann, Agneta Fransson, Thomas Frölicher, Giovanni Galli, Marion Gehlen, Aridane G. González, Melchor Gonzalez-Davila, Nicolas Gruber, Örjan Gustafsson, Judith Hauck, Mikko Heino, Stephanie Henson, Jenny Hieronymus, I. Emma Huertas, Fatma Jebri, Aurich Jeltsch-Thömmes, Fortunat Joos, Jaideep Joshi, Stephen Kelly, Nandini Menon, Precious Mongwe, Laurent Oziel, Sólveig Ólafsdottir, Julien Palmieri, Fiz F. Pérez, Rajamohanan Pillai Ranith, Juliano Ramanantsoa, Tilla Roy, Dagmara Rusiecka, J. Magdalena Santana Casiano, Yeray Santana-Falcón, Jörg Schwinger, Roland Séférian, Miriam Seifert, Anna Shchiptsova, Bablu Sinha, Christopher Somes, Reiner Steinfeldt, Dandan Tao, Jerry Tjiputra, Adam Ulfsbo, Christoph Völker, Tsuyoshi Wakamatsu, and Ying Ye
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-182, https://doi.org/10.5194/bg-2023-182, 2023
Revised manuscript under review for BG
Short summary
Short summary
For assessing the consequences of human-induced climate change for the marine realm, it is necessary to not only look at gradual changes but also at abrupt changes of environmental conditions. We summarise abrupt changes in ocean warming, acidification, and oxygen concentration as the key environmental factors for ecosystems. Taking these abrupt changes into account requires greenhouse gas emissions to be reduced to a larger extent than previously thought to limit respective damage.
Nicolás Riveras-Muñoz, Steffen Seitz, Kristina Witzgall, Victoria Rodríguez, Peter Kühn, Carsten W. Mueller, Rómulo Oses, Oscar Seguel, Dirk Wagner, and Thomas Scholten
SOIL, 8, 717–731, https://doi.org/10.5194/soil-8-717-2022, https://doi.org/10.5194/soil-8-717-2022, 2022
Short summary
Short summary
Biological soil crusts (biocrusts) stabilize the soil surface mainly in arid regions but are also present in Mediterranean and humid climates. We studied this stabilizing effect through wet and dry sieving along a large climatic gradient in Chile and found that the stabilization of soil aggregates persists in all climates, but their role is masked and reserved for a limited number of size fractions under humid conditions by higher vegetation and organic matter contents in the topsoil.
Jaclyn Clement Kinney, Karen M. Assmann, Wieslaw Maslowski, Göran Björk, Martin Jakobsson, Sara Jutterström, Younjoo J. Lee, Robert Osinski, Igor Semiletov, Adam Ulfsbo, Irene Wåhlström, and Leif G. Anderson
Ocean Sci., 18, 29–49, https://doi.org/10.5194/os-18-29-2022, https://doi.org/10.5194/os-18-29-2022, 2022
Short summary
Short summary
We use data crossing Herald Canyon in the Chukchi Sea collected in 2008 and 2014 together with numerical modelling to investigate the circulation in the western Chukchi Sea. A large fraction of water from the Chukchi Sea enters the East Siberian Sea south of Wrangel Island and circulates in an anticyclonic direction around the island. To assess the differences between years, we use numerical modelling results, which show that high-frequency variability dominates the flow in Herald Canyon.
Jannik Martens, Evgeny Romankevich, Igor Semiletov, Birgit Wild, Bart van Dongen, Jorien Vonk, Tommaso Tesi, Natalia Shakhova, Oleg V. Dudarev, Denis Kosmach, Alexander Vetrov, Leopold Lobkovsky, Nikolay Belyaev, Robie W. Macdonald, Anna J. Pieńkowski, Timothy I. Eglinton, Negar Haghipour, Salve Dahle, Michael L. Carroll, Emmelie K. L. Åström, Jacqueline M. Grebmeier, Lee W. Cooper, Göran Possnert, and Örjan Gustafsson
Earth Syst. Sci. Data, 13, 2561–2572, https://doi.org/10.5194/essd-13-2561-2021, https://doi.org/10.5194/essd-13-2561-2021, 2021
Short summary
Short summary
The paper describes the establishment, structure and current status of the first Circum-Arctic Sediment CArbon DatabasE (CASCADE), which is a scientific effort to harmonize and curate all published and unpublished data of carbon, nitrogen, carbon isotopes, and terrigenous biomarkers in sediments of the Arctic Ocean in one database. CASCADE will enable a variety of studies of the Arctic carbon cycle and thus contribute to a better understanding of how climate change affects the Arctic.
James F. Spray, Thomas Wagner, Juliane Bischoff, Sara Trojahn, Sevda Norouzi, Walter Hill, Julian Brasche, Leroy James, and Ryan Pereira
Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-92, https://doi.org/10.5194/bg-2021-92, 2021
Manuscript not accepted for further review
Short summary
Short summary
Sunlight and microbial activity break down river dissolved organic matter (DOM), releasing greenhouse gases, but are poorly understood in tropical headwaters. We incubated water in light and darkness, using novel methods to quantify changes in DOM concentration and character. Light removed up to 9 % of DOM, but microbial activity had a varied response. Importantly, light affected DOM compounds considered photo-resistant; likewise microbial activity degraded compounds thought to be bio-resistant.
Patryk Krauze, Dirk Wagner, Diogo Noses Spinola, and Peter Kühn
Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-203, https://doi.org/10.5194/bg-2020-203, 2020
Manuscript not accepted for further review
Short summary
Short summary
Soils from the recently deglaciated foreland of the Ecology Glacier, King George Island, were analyzed using soil chemical and microbiological methods to gain insight into the state of soil formation and its interplay with microbial activity. In the foreland of the Ecology Glacier, acidification, soil carbon/nitrogen accumulation, and changes in microbial communities and vegetation were observable on a decadal timescale, whereas weathering processes occur centuries/millenia after deglaciation.
Alexander Osadchiev, Igor Medvedev, Sergey Shchuka, Mikhail Kulikov, Eduard Spivak, Maria Pisareva, and Igor Semiletov
Ocean Sci., 16, 781–798, https://doi.org/10.5194/os-16-781-2020, https://doi.org/10.5194/os-16-781-2020, 2020
Short summary
Short summary
The Yenisei and Khatanga rivers are among the largest estuarine rivers that inflow to the Arctic Ocean. Discharge of the Yenisei River is 1 order of magnitude larger than that of the Khatanga River. However, spatial scales of buoyant plumes formed by freshwater runoff from the Yenisei and Khatanga gulfs are similar. This feature is caused by intense tidal mixing in the Khatanga Gulf, which causes formation of the diluted and therefore anomalously deep and large Khatanga plume.
Francesco Muschitiello, Matt O'Regan, Jannik Martens, Gabriel West, Örjan Gustafsson, and Martin Jakobsson
Geochronology, 2, 81–91, https://doi.org/10.5194/gchron-2-81-2020, https://doi.org/10.5194/gchron-2-81-2020, 2020
Short summary
Short summary
In this study we present a new marine chronology of the last ~30 000 years for a sediment core retrieved from the central Arctic Ocean. Our new chronology reveals substantially faster sedimentation rates during the end of the last glacial cycle, the Last Glacial Maximum, and deglaciation than previously reported, thus implying a substantial re-interpretation of paleoceanographic reconstructions from this sector of the Arctic Ocean.
Julia Mitzscherling, Fabian Horn, Maria Winterfeld, Linda Mahler, Jens Kallmeyer, Pier P. Overduin, Lutz Schirrmeister, Matthias Winkel, Mikhail N. Grigoriev, Dirk Wagner, and Susanne Liebner
Biogeosciences, 16, 3941–3958, https://doi.org/10.5194/bg-16-3941-2019, https://doi.org/10.5194/bg-16-3941-2019, 2019
Short summary
Short summary
Permafrost temperatures increased substantially at a global scale, potentially altering microbial assemblages involved in carbon mobilization before permafrost thaws. We used Arctic Shelf submarine permafrost as a natural laboratory to investigate the microbial response to long-term permafrost warming. Our work shows that millennia after permafrost warming by > 10 °C, microbial community composition and population size reflect the paleoenvironment rather than a direct effect through warming.
Lars A. Meier, Patryk Krauze, Isabel Prater, Fabian Horn, Carlos E. G. R. Schaefer, Thomas Scholten, Dirk Wagner, Carsten W. Mueller, and Peter Kühn
Biogeosciences, 16, 2481–2499, https://doi.org/10.5194/bg-16-2481-2019, https://doi.org/10.5194/bg-16-2481-2019, 2019
Short summary
Short summary
James Ross Island offers the opportunity to study the undisturbed interplay of microbial activity and pedogenesis. Soils from two sites representing coastal and inland conditions were chosen and analyzed with a wide range of techniques to describe soil properties. We are able to show that coastal conditions go along with more intense weathering and therefore favor soil formation and that microbial communities are initially more affected by weathering and structure than by chemical parameters.
Sarah Conrad, Johan Ingri, Johan Gelting, Fredrik Nordblad, Emma Engström, Ilia Rodushkin, Per S. Andersson, Don Porcelli, Örjan Gustafsson, Igor Semiletov, and Björn Öhlander
Biogeosciences, 16, 1305–1319, https://doi.org/10.5194/bg-16-1305-2019, https://doi.org/10.5194/bg-16-1305-2019, 2019
Short summary
Short summary
Iron analysis of the particulate, colloidal, and truly dissolved fractions along the Lena River freshwater plume showed that the particulate iron dominates close to the coast. Over 99 % particulate and about 90 % colloidal iron were lost, while the truly dissolved phase was almost constant. Iron isotopes suggest that the shelf acts as a sink for particles and colloids with negative iron isotope values, while colloids with positive iron isotope values travel further out into the Arctic Ocean.
Birgit Wild, Natalia Shakhova, Oleg Dudarev, Alexey Ruban, Denis Kosmach, Vladimir Tumskoy, Tommaso Tesi, Hanna Joß, Helena Alexanderson, Martin Jakobsson, Alexey Mazurov, Igor Semiletov, and Örjan Gustafsson
The Cryosphere Discuss., https://doi.org/10.5194/tc-2018-229, https://doi.org/10.5194/tc-2018-229, 2018
Revised manuscript not accepted
Short summary
Short summary
The thaw and degradation of subsea permafrost on the Arctic Ocean shelves is one of the key uncertainties concerning natural greenhouse gas emissions since difficult access limits the availability of observational data. In this study, we describe sediment properties and age constraints of a unique set of three subsea permafrost cores from the East Siberian Arctic Shelf, as well as content, origin and degradation state of organic matter at the current thaw front.
Robert B. Sparkes, Melissa Maher, Jerome Blewett, Ayça Doğrul Selver, Örjan Gustafsson, Igor P. Semiletov, and Bart E. van Dongen
The Cryosphere, 12, 3293–3309, https://doi.org/10.5194/tc-12-3293-2018, https://doi.org/10.5194/tc-12-3293-2018, 2018
Short summary
Short summary
Ongoing climate change in the Siberian Arctic region has the potential to release large amounts of carbon, currently stored in permafrost, to the Arctic Shelf. Degradation can release this to the atmosphere as greenhouse gas. We used Raman spectroscopy to analyse a fraction of this carbon, carbonaceous material, a group that includes coal, lignite and graphite. We were able to trace this carbon from the river mouths and coastal erosion sites across the Arctic shelf for hundreds of kilometres.
Svetlana P. Pugach, Irina I. Pipko, Natalia E. Shakhova, Evgeny A. Shirshin, Irina V. Perminova, Örjan Gustafsson, Valery G. Bondur, Alexey S. Ruban, and Igor P. Semiletov
Ocean Sci., 14, 87–103, https://doi.org/10.5194/os-14-87-2018, https://doi.org/10.5194/os-14-87-2018, 2018
Short summary
Short summary
This paper explores the possibility of using CDOM and its spectral parameters to identify the different biogeochemical regimes on the ESAS. The strong correlation between DOC and CDOM values in the surface shelf waters influenced by terrigenous discharge indicates that it is feasible to estimate DOC content from CDOM fluorescence assessed in situ. The direct estimation of DOM optical parameters in the surface ESAS waters provided by this study will be useful for validating remote sensing data.
Volker Brüchert, Lisa Bröder, Joanna E. Sawicka, Tommaso Tesi, Samantha P. Joye, Xiaole Sun, Igor P. Semiletov, and Vladimir A. Samarkin
Biogeosciences, 15, 471–490, https://doi.org/10.5194/bg-15-471-2018, https://doi.org/10.5194/bg-15-471-2018, 2018
Short summary
Short summary
We determined the aerobic and anaerobic degradation rates of land- and marine-derived organic material in East Siberian shelf sediment. Marine plankton-derived organic carbon was the main source for the oxic dissolved carbon dioxide production, whereas terrestrial organic material significantly contributed to the production of carbon dioxide under anoxic conditions. Our direct degradation rate measurements provide new constraints for the present-day Arctic marine carbon budget.
Robert Bussert, Horst Kämpf, Christina Flechsig, Katja Hesse, Tobias Nickschick, Qi Liu, Josefine Umlauft, Tomáš Vylita, Dirk Wagner, Thomas Wonik, Hortencia Estrella Flores, and Mashal Alawi
Sci. Dril., 23, 13–27, https://doi.org/10.5194/sd-23-13-2017, https://doi.org/10.5194/sd-23-13-2017, 2017
Irina I. Pipko, Svetlana P. Pugach, Igor P. Semiletov, Leif G. Anderson, Natalia E. Shakhova, Örjan Gustafsson, Irina A. Repina, Eduard A. Spivak, Alexander N. Charkin, Anatoly N. Salyuk, Kseniia P. Shcherbakova, Elena V. Panova, and Oleg V. Dudarev
Ocean Sci., 13, 997–1016, https://doi.org/10.5194/os-13-997-2017, https://doi.org/10.5194/os-13-997-2017, 2017
Short summary
Short summary
The study of the outer shelf and the continental slope waters of the Eurasian Arctic seas has revealed a general trend in the surface pCO2 distribution, which manifested as an increase in pCO2 values eastward. It has been shown that the influence of terrestrial discharge on the carbonate system of East Siberian Arctic sea surface waters is not limited to the shallow shelf and that contemporary climate change impacts the carbon cycle of the Eurasian Arctic Ocean and influences air–sea CO2 flux.
Alexander N. Charkin, Michiel Rutgers van der Loeff, Natalia E. Shakhova, Örjan Gustafsson, Oleg V. Dudarev, Maxim S. Cherepnev, Anatoly N. Salyuk, Andrey V. Koshurnikov, Eduard A. Spivak, Alexey Y. Gunar, Alexey S. Ruban, and Igor P. Semiletov
The Cryosphere, 11, 2305–2327, https://doi.org/10.5194/tc-11-2305-2017, https://doi.org/10.5194/tc-11-2305-2017, 2017
Short summary
Short summary
This study tests the hypothesis that SGD exists in the Siberian Arctic shelf seas, but its dynamics may be largely controlled by complicated geocryological conditions such as permafrost. The permafrost cements rocks, forms a confining bed, and as a result makes it difficult for the groundwater escape to the shelf surface. However, the discovery of subterranean outcrops of groundwater springs in the Buor-Khaya Gulf are clear evidence that a groundwater flow system exists in the environment.
Matt O'Regan, Jan Backman, Natalia Barrientos, Thomas M. Cronin, Laura Gemery, Nina Kirchner, Larry A. Mayer, Johan Nilsson, Riko Noormets, Christof Pearce, Igor Semiletov, Christian Stranne, and Martin Jakobsson
Clim. Past, 13, 1269–1284, https://doi.org/10.5194/cp-13-1269-2017, https://doi.org/10.5194/cp-13-1269-2017, 2017
Short summary
Short summary
Past glacial activity on the East Siberian continental margin is poorly known, partly due to the lack of geomorphological evidence. Here we present geophysical mapping and sediment coring data from the East Siberian shelf and slope revealing the presence of a glacially excavated cross-shelf trough reaching to the continental shelf edge north of the De Long Islands. The data provide direct evidence for extensive glacial activity on the Siberian shelf that predates the Last Glacial Maximum.
Kirsi Keskitalo, Tommaso Tesi, Lisa Bröder, August Andersson, Christof Pearce, Martin Sköld, Igor P. Semiletov, Oleg V. Dudarev, and Örjan Gustafsson
Clim. Past, 13, 1213–1226, https://doi.org/10.5194/cp-13-1213-2017, https://doi.org/10.5194/cp-13-1213-2017, 2017
Short summary
Short summary
In this study we investigate land-to-ocean transfer and the fate of permafrost carbon in the East Siberian Sea from the early Holocene until the present day. Our results suggest that there was a high input of terrestrial organic carbon to the East Siberian Sea during the last glacial–interglacial period caused by permafrost destabilisation. This material was mainly characterised as relict Pleistocene permafrost deposited via coastal erosion as a result of the sea level rise.
Tommaso Tesi, Marc C. Geibel, Christof Pearce, Elena Panova, Jorien E. Vonk, Emma Karlsson, Joan A. Salvado, Martin Kruså, Lisa Bröder, Christoph Humborg, Igor Semiletov, and Örjan Gustafsson
Ocean Sci., 13, 735–748, https://doi.org/10.5194/os-13-735-2017, https://doi.org/10.5194/os-13-735-2017, 2017
Short summary
Short summary
Recent Arctic studies suggest that sea-ice decline and permafrost thawing will affect the phytoplankton in the Arctic Ocean. However, in what way the plankton composition will change as the warming proceeds remains elusive. Here we show that the carbon composition of plankton might change as a function of the enhanced terrestrial organic carbon supply and progressive sea-ice thawing.
Thomas M. Cronin, Matt O'Regan, Christof Pearce, Laura Gemery, Michael Toomey, Igor Semiletov, and Martin Jakobsson
Clim. Past, 13, 1097–1110, https://doi.org/10.5194/cp-13-1097-2017, https://doi.org/10.5194/cp-13-1097-2017, 2017
Short summary
Short summary
Global sea level rise during the last deglacial flooded the Siberian continental shelf in the Arctic Ocean. Sediment cores, radiocarbon dating, and microfossils show that the regional sea level in the Arctic rose rapidly from about 12 500 to 10 700 years ago. Regional sea level history on the Siberian shelf differs from the global deglacial sea level rise perhaps due to regional vertical adjustment resulting from the growth and decay of ice sheets.
Jorien E. Vonk, Tommaso Tesi, Lisa Bröder, Henry Holmstrand, Gustaf Hugelius, August Andersson, Oleg Dudarev, Igor Semiletov, and Örjan Gustafsson
The Cryosphere, 11, 1879–1895, https://doi.org/10.5194/tc-11-1879-2017, https://doi.org/10.5194/tc-11-1879-2017, 2017
Martin Jakobsson, Christof Pearce, Thomas M. Cronin, Jan Backman, Leif G. Anderson, Natalia Barrientos, Göran Björk, Helen Coxall, Agatha de Boer, Larry A. Mayer, Carl-Magnus Mörth, Johan Nilsson, Jayne E. Rattray, Christian Stranne, Igor Semiletov, and Matt O'Regan
Clim. Past, 13, 991–1005, https://doi.org/10.5194/cp-13-991-2017, https://doi.org/10.5194/cp-13-991-2017, 2017
Short summary
Short summary
The Arctic and Pacific oceans are connected by the presently ~53 m deep Bering Strait. During the last glacial period when the sea level was lower than today, the Bering Strait was exposed. Humans and animals could then migrate between Asia and North America across the formed land bridge. From analyses of sediment cores and geophysical mapping data from Herald Canyon north of the Bering Strait, we show that the land bridge was flooded about 11 000 years ago.
Ira Leifer, Denis Chernykh, Natalia Shakhova, and Igor Semiletov
The Cryosphere, 11, 1333–1350, https://doi.org/10.5194/tc-11-1333-2017, https://doi.org/10.5194/tc-11-1333-2017, 2017
Short summary
Short summary
Vast Arctic methane deposits may alter global climate and require remote sensing (RS) to map. Sonar has great promise, but quantitative inversion based on theory is challenged by multiple bubble acoustical scattering in plumes. We demonstrate use of a real-world in situ bubble plume calibration using a bubble model to correct for differences in the calibration and seep plumes. Spatial seep sonar maps were then used to improve understanding of subsurface geologic controls.
Célia J. Sapart, Natalia Shakhova, Igor Semiletov, Joachim Jansen, Sönke Szidat, Denis Kosmach, Oleg Dudarev, Carina van der Veen, Matthias Egger, Valentine Sergienko, Anatoly Salyuk, Vladimir Tumskoy, Jean-Louis Tison, and Thomas Röckmann
Biogeosciences, 14, 2283–2292, https://doi.org/10.5194/bg-14-2283-2017, https://doi.org/10.5194/bg-14-2283-2017, 2017
Short summary
Short summary
The Arctic Ocean, especially the Siberian shelves, overlays large areas of subsea permafrost that is degrading. We show that methane with a biogenic origin is emitted from this permafrost. At locations where bubble plumes have been observed, methane can escape oxidation in the surface sediment and rapidly migrate through the very shallow water column of this region to escape to the atmosphere, generating a positive radiative feedback.
Leif G. Anderson, Göran Björk, Ola Holby, Sara Jutterström, Carl Magnus Mörth, Matt O'Regan, Christof Pearce, Igor Semiletov, Christian Stranne, Tim Stöven, Toste Tanhua, Adam Ulfsbo, and Martin Jakobsson
Ocean Sci., 13, 349–363, https://doi.org/10.5194/os-13-349-2017, https://doi.org/10.5194/os-13-349-2017, 2017
Short summary
Short summary
We use data collected in 2014 to show that the outflow of nutrient-rich water occurs much further to the west than has been reported in the past. We suggest that this is due to much less summer sea-ice coverage in the northwestern East Siberian Sea than in the past decades. Further, our data support a more complicated flow pattern in the region where the Mendeleev Ridge reaches the shelf compared to the general cyclonic circulation within the individual basins as suggested historically.
Christof Pearce, Aron Varhelyi, Stefan Wastegård, Francesco Muschitiello, Natalia Barrientos, Matt O'Regan, Thomas M. Cronin, Laura Gemery, Igor Semiletov, Jan Backman, and Martin Jakobsson
Clim. Past, 13, 303–316, https://doi.org/10.5194/cp-13-303-2017, https://doi.org/10.5194/cp-13-303-2017, 2017
Short summary
Short summary
The eruption of the Alaskan Aniakchak volcano of 3.6 thousand years ago was one of the largest Holocene eruptions worldwide. The resulting ash is found in several Alaskan sites and as far as Newfoundland and Greenland. In this study, we found ash from the Aniakchak eruption in a marine sediment core from the western Chukchi Sea in the Arctic Ocean. Combined with radiocarbon dates on mollusks, the volcanic age marker is used to calculate the marine radiocarbon reservoir age at that time.
Leif G. Anderson, Jörgen Ek, Ylva Ericson, Christoph Humborg, Igor Semiletov, Marcus Sundbom, and Adam Ulfsbo
Biogeosciences, 14, 1811–1823, https://doi.org/10.5194/bg-14-1811-2017, https://doi.org/10.5194/bg-14-1811-2017, 2017
Short summary
Short summary
Waters with very high pCO2, nutrients and low oxygen concentrations were observed along the continental margin of the East Siberian Sea and well out into the deep Makarov and Canada basins during the SWERUS-C3 expedition in 2014. This water had a low saturation state with respect to calcium carbonate, down to less than 0.8 for calcite and 0.5 for aragonite, and is traced in historic data to the Canada Basin and in the waters flowing out of the Arctic Ocean in the western Fram Strait.
Erik Gustafsson, Christoph Humborg, Göran Björk, Christian Stranne, Leif G. Anderson, Marc C. Geibel, Carl-Magnus Mörth, Marcus Sundbom, Igor P. Semiletov, Brett F. Thornton, and Bo G. Gustafsson
Biogeosciences Discuss., https://doi.org/10.5194/bg-2017-115, https://doi.org/10.5194/bg-2017-115, 2017
Preprint withdrawn
Short summary
Short summary
In this study we quantify key carbon cycling processes on the East Siberian Arctic Shelf. A specific aim is to determine the pathways of terrestrial organic carbon (OC) supplied by rivers and coastline erosion – and particularly to what extent degradation of terrestrial OC contributes to air-sea CO2 exchange. We estimate that the shelf is a weak CO2 sink, although this sink is considerably reduced mainly by degradation of eroded OC and to a lesser extent by degradation of riverine OC.
Joan A. Salvadó, Tommaso Tesi, Marcus Sundbom, Emma Karlsson, Martin Kruså, Igor P. Semiletov, Elena Panova, and Örjan Gustafsson
Biogeosciences, 13, 6121–6138, https://doi.org/10.5194/bg-13-6121-2016, https://doi.org/10.5194/bg-13-6121-2016, 2016
Short summary
Short summary
Fluvial discharge and coastal erosion of the permafrost-dominated East Siberian Arctic delivers large quantities of terrigenous organic carbon (Terr-OC) to marine waters. We assessed its fate and composition in different marine pools with a suite of biomarkers. The dissolved organic carbon is transporting off-shelf “young” and fresh vascular plant material, while sedimentary and near-bottom particulate organic carbon preferentially carries old organic carbon released from thawing permafrost.
Robert B. Sparkes, Ayça Doğrul Selver, Örjan Gustafsson, Igor P. Semiletov, Negar Haghipour, Lukas Wacker, Timothy I. Eglinton, Helen M. Talbot, and Bart E. van Dongen
The Cryosphere, 10, 2485–2500, https://doi.org/10.5194/tc-10-2485-2016, https://doi.org/10.5194/tc-10-2485-2016, 2016
Short summary
Short summary
The permafrost in eastern Siberia contains large amounts of carbon frozen in soils and sediments. Continuing global warming is thawing the permafrost and releasing carbon to the Arctic Ocean. We used pyrolysis-GCMS, a chemical fingerprinting technique, to study the types of carbon being deposited on the continental shelf. We found large amounts of permafrost-sourced carbon being deposited up to 200 km offshore.
Lisa Bröder, Tommaso Tesi, Joan A. Salvadó, Igor P. Semiletov, Oleg V. Dudarev, and Örjan Gustafsson
Biogeosciences, 13, 5003–5019, https://doi.org/10.5194/bg-13-5003-2016, https://doi.org/10.5194/bg-13-5003-2016, 2016
Short summary
Short summary
Thawing permafrost may release large amounts of terrestrial organic carbon (TerrOC) to the Arctic Ocean. We assessed its fate in the marine environment with a suite of biomarkers. Across the Laptev Sea their concentrations in surface sediments decreased significantly and showed a trend to qualitatively more degraded TerrOC with increasing water depth. We infer that the degree of degradation of TerrOC is a function of the time spent under oxic conditions during protracted cross-shelf transport.
J. E. Vonk, S. E. Tank, P. J. Mann, R. G. M. Spencer, C. C. Treat, R. G. Striegl, B. W. Abbott, and K. P. Wickland
Biogeosciences, 12, 6915–6930, https://doi.org/10.5194/bg-12-6915-2015, https://doi.org/10.5194/bg-12-6915-2015, 2015
Short summary
Short summary
We found that dissolved organic carbon (DOC) in arctic soils and aquatic systems is increasingly degradable with increasing permafrost extent. Also, DOC seems less degradable when moving down the fluvial network in continuous permafrost regions, i.e. from streams to large rivers, suggesting that highly bioavailable DOC is lost in headwater streams. We also recommend a standardized DOC incubation protocol to facilitate future comparison on processing and transport of DOC in a changing Arctic.
B. M. Voss, B. Peucker-Ehrenbrink, T. I. Eglinton, R. G. M. Spencer, E. Bulygina, V. Galy, C. H. Lamborg, P. M. Ganguli, D. B. Montluçon, S. Marsh, S. L. Gillies, J. Fanslau, A. Epp, and R. Luymes
Biogeosciences, 12, 5597–5618, https://doi.org/10.5194/bg-12-5597-2015, https://doi.org/10.5194/bg-12-5597-2015, 2015
Short summary
Short summary
This study presents seasonal cycles of organic matter concentration and composition in the Fraser River. Dissolved organic matter patterns are linked to flushing of shallow soil layers during spring snowmelt and fall rain events. The preliminary Hg data set indicates significant changes in concentrations during the spring freshet. Organic carbon export, as both area-normalized yield and the proportion of basin primary productivity, in the Fraser River is typical of large rivers globally.
X. Feng, Ö. Gustafsson, R. M. Holmes, J. E. Vonk, B. E. van Dongen, I. P. Semiletov, O. V. Dudarev, M. B. Yunker, R. W. Macdonald, D. B. Montluçon, and T. I. Eglinton
Biogeosciences, 12, 4841–4860, https://doi.org/10.5194/bg-12-4841-2015, https://doi.org/10.5194/bg-12-4841-2015, 2015
Short summary
Short summary
Currently very few studies have examined the distribution and fate of hydrolyzable organic carbon (OC) in Arctic sediments, whose fate remains unclear in the context of climate change. Our study focuses on the source, distribution and fate of hydrolyzable OC as compared with plant wax lipids and lignin phenols in the sedimentary particles of nine Arctic and sub-Arctic rivers. This multi-molecular approach allows for a comprehensive investigation of terrestrial OC transfer via Arctic rivers.
R. B. Sparkes, A. Doğrul Selver, J. Bischoff, H. M. Talbot, Ö. Gustafsson, I. P. Semiletov, O. V. Dudarev, and B. E. van Dongen
Biogeosciences, 12, 3753–3768, https://doi.org/10.5194/bg-12-3753-2015, https://doi.org/10.5194/bg-12-3753-2015, 2015
Short summary
Short summary
Siberian permafrost contains large amounts of organic carbon that may be released by climate warming. We collected and analysed samples from the East Siberian Sea, using GDGT biomarkers to trace the sourcing and deposition of organic carbon across the shelf. We show that branched GDGTs may be used to trace river erosion. Results from modelling show that organic carbon on the shelf is a complex process involving river-derived and coastal-derived material as well as marine carbon production.
S.-J. Kao, R. G. Hilton, K. Selvaraj, M. Dai, F. Zehetner, J.-C. Huang, S.-C. Hsu, R. Sparkes, J. T. Liu, T.-Y. Lee, J.-Y. T. Yang, A. Galy, X. Xu, and N. Hovius
Earth Surf. Dynam., 2, 127–139, https://doi.org/10.5194/esurf-2-127-2014, https://doi.org/10.5194/esurf-2-127-2014, 2014
E. N. Kirillova, A. Andersson, J. Han, M. Lee, and Ö. Gustafsson
Atmos. Chem. Phys., 14, 1413–1422, https://doi.org/10.5194/acp-14-1413-2014, https://doi.org/10.5194/acp-14-1413-2014, 2014
T. Dahm, P. Hrubcová, T. Fischer, J. Horálek, M. Korn, S. Buske, and D. Wagner
Sci. Dril., 16, 93–99, https://doi.org/10.5194/sd-16-93-2013, https://doi.org/10.5194/sd-16-93-2013, 2013
I. P. Semiletov, N. E. Shakhova, I. I. Pipko, S. P. Pugach, A. N. Charkin, O. V. Dudarev, D. A. Kosmach, and S. Nishino
Biogeosciences, 10, 5977–5996, https://doi.org/10.5194/bg-10-5977-2013, https://doi.org/10.5194/bg-10-5977-2013, 2013
Related subject area
Biogeochemistry: Organic Biogeochemistry
Sea-ice-associated algae and zooplankton fecal pellets fuel organic particle export in the seasonally ice-covered northwestern Labrador Sea
Sedimentary organic carbon dynamics in a glaciated Arctic fjord: tracing contributions of terrestrial and marine sources in the context of Atlantification over recent centuries
Distribution of alkylamines in surface waters around the Antarctic Peninsula and Weddell Sea
Methanogenesis by CO2 reduction dominates lake sediments with different organic matter compositions
Contrasting seasonal patterns in particle aggregation and dissolved organic matter transformation in a sub-Arctic fjord
Methods to characterize type, relevance, and interactions of organic matter and microorganisms in fluids along the flow path of a geothermal facility
Microbial strong organic-ligand production is tightly coupled to iron in hydrothermal plumes
Ocean liming effects on dissolved organic matter dynamics
Results from a multi-laboratory ocean metaproteomic intercomparison: effects of LC-MS acquisition and data analysis procedures
Controls on the composition of hydroxylated isoprenoidal glycerol dialkyl glycerol tetraethers (isoGDGTs) in cultivated ammonia-oxidizing Thaumarchaeota
Reviews and syntheses: Opportunities for robust use of peak intensities from high-resolution mass spectrometry in organic matter studies
Hydrothermal inputs drive dynamic shifts in microbial communities in Lake Magadi, Kenya Rift Valley
Elemental stoichiometry of particulate organic matter across the Atlantic Ocean
Lipid remodeling in phytoplankton exposed to multi-environmental drivers in a mesocosm experiment
Molecular-level carbon traits of fine roots: unveiling adaptation and decomposition under flooded conditions
Environmental controls on the distribution of brGDGTs and brGMGTs across the Seine River basin (NW France): implications for bacterial tetraethers as a proxy for riverine runoff
Latitudinal distribution of biomarkers across the western Arctic Ocean and the Bering Sea: an approach to assess sympagic and pelagic algal production
Sinking fate and carbon export of zooplankton fecal pellets: insights from time-series sediment trap observations in the northern South China Sea
Low cobalt inventories in the Amundsen and Ross seas driven by high demand for labile cobalt uptake among native phytoplankton communities
Potential bioavailability of representative pyrogenic organic matter compounds in comparison to natural dissolved organic matter pools
Distributions of bacteriohopanepolyols in lakes and coastal lagoons of the Azores Archipelago
Recently fixed carbon fuels microbial activity several meters below the soil surface
Environmental and hydrologic controls on sediment and organic carbon export from a subalpine catchment: insights from a time series
Climate and geology overwrite land use effects on soil organic nitrogen cycling on a continental scale
Compositions of dissolved organic matter in the ice-covered waters above the Aurora hydrothermal vent system, Gakkel Ridge, Arctic Ocean
Organic matter characteristics of a rapidly eroding permafrost cliff in NE Siberia (Lena Delta, Laptev Sea region)
Microbial labilization and diversification of pyrogenic dissolved organic matter
Bacterial and eukaryotic intact polar lipids point to in situ production as a key source of labile organic matter in hadal surface sediment of the Atacama Trench
What can we learn from amino acids about oceanic organic matter cycling and degradation?
Bacteriohopanetetrol-x: constraining its application as a lipid biomarker for marine anammox using the water column oxygen gradient of the Benguela upwelling system
Active and passive fluxes of carbon, nitrogen, and phosphorus in the northern South China Sea
Cyanobacteria net community production in the Baltic Sea as inferred from profiling pCO2 measurements
Reviews and syntheses: Heterotrophic fixation of inorganic carbon – significant but invisible flux in environmental carbon cycling
Revised fractional abundances and warm-season temperatures substantially improve brGDGT calibrations in lake sediments
Archaeal intact polar lipids in polar waters: a comparison between the Amundsen and Scotia seas
Reproducible determination of dissolved organic matter photosensitivity
Technical note: Uncovering the influence of methodological variations on the extractability of iron-bound organic carbon
Anthropocene climate warming enhances autochthonous carbon cycling in an upland Arctic lake, Disko Island, West Greenland
Novel hydrocarbon-utilizing soil mycobacteria synthesize unique mycocerosic acids at a Sicilian everlasting fire
Alkenone isotopes show evidence of active carbon concentrating mechanisms in coccolithophores as aqueous carbon dioxide concentrations fall below 7 µmol L−1
Seasonal variability and sources of in situ brGDGT production in a permanently stratified African crater lake
Sediment release of dissolved organic matter to the oxygen minimum zone off Peru
Better molecular preservation of organic matter in an oxic than in a sulfidic depositional environment: evidence from Thalassiphora pelagica (Dinoflagellata, Eocene) cysts
Assessing branched tetraether lipids as tracers of soil organic carbon transport through the Carminowe Creek catchment (southwest England)
The nonconservative distribution pattern of organic matter in the Rajang, a tropical river with peatland in its estuary
Predominance of hexamethylated 6-methyl branched glycerol dialkyl glycerol tetraethers in the Mariana Trench: source and environmental implication
High-pH and anoxic conditions during soil organic matter extraction increases its electron-exchange capacity and ability to stimulate microbial Fe(III) reduction by electron shuttling
Sterol preservation in hypersaline microbial mats
Structural elucidation and environmental distributions of butanetriol and pentanetriol dialkyl glycerol tetraethers (BDGTs and PDGTs)
Distribution and degradation of terrestrial organic matter in the sediments of peat-draining rivers, Sarawak, Malaysian Borneo
Shao-Min Chen, Thibaud Dezutter, David Cote, Catherine Lalande, Evan Edinger, and Owen A. Sherwood
Biogeosciences, 22, 2517–2540, https://doi.org/10.5194/bg-22-2517-2025, https://doi.org/10.5194/bg-22-2517-2025, 2025
Short summary
Short summary
The origins and composition of sinking organic matter are still understudied for the oceans, especially in ice-covered areas. We use amino acid stable isotopes combined with particle flux and plankton taxonomy to investigate the sources and composition of exported organic matter from a sediment-trap-derived time series of sinking particles in the northwestern Labrador Sea. We found that sea-ice algae and fecal pellets may be important contributors to the sinking fluxes of carbon and nitrogen.
Dahae Kim, Jung-Hyun Kim, Youngkyu Ahn, Matthias Forwick, and Seung-Il Nam
EGUsphere, https://doi.org/10.5194/egusphere-2025-957, https://doi.org/10.5194/egusphere-2025-957, 2025
Short summary
Short summary
The Arctic is warming rapidly, altering carbon storage in Svalbard’s Kongsfjorden. Our study analyzed sediment cores to track organic carbon shifts over time. We found that increasing Atlantic Water inflow enhanced marine carbon while reducing land-derived inputs. These findings suggest that Atlantification is reshaping carbon sequestration in Arctic fjords, with broader implications for the Arctic carbon cycle.
Arianna Rocchi, Mark F. Fitzsimons, Preston Akenga, Ana Sotomayor, Elisabet L. Sà, Queralt Güell-Bujons, Magda Vila, Yaiza M. Castillo, Manuel Dall’Osto, Dolors Vaqué, Charel Wohl, Rafel Simó, and Elisa Berdalet
EGUsphere, https://doi.org/10.5194/egusphere-2025-407, https://doi.org/10.5194/egusphere-2025-407, 2025
Short summary
Short summary
During the Polar Change expedition, volatile alkylamines, important players in nitrogen cycling and cloud formation, were measured in Antarctic waters using a high-sensitivity method. Trimethylamine was the dominant alkylamine in marine particles, associated with nanophytoplankton. Dissolved dimethylamine likely originated from trimethylamine degradation, while diethylamine sources remain unclear. These findings confirm the biological origin of alkylamines in polar marine microbial food webs.
Guangyi Su, Julie Tolu, Clemens Glombitza, Jakob Zopfi, Moritz F. Lehmann, Mark A. Lever, and Carsten J. Schubert
EGUsphere, https://doi.org/10.5194/egusphere-2025-437, https://doi.org/10.5194/egusphere-2025-437, 2025
Short summary
Short summary
In Lake Geneva, we studied how different types of organic matter affect methane production. Despite varying sources—like algae and land-based materials, both deep and delta areas are significant methane sources and methane was mainly produced through CO2 reduction. Surprisingly, the origin of organic matter didn’t strongly influence methane production rates or pathways. Our findings highlight the need to better understand microbial processes to predict methane emissions from lakes.
Maria G. Digernes, Yasemin V. Bodur, Martí Amargant-Arumí, Oliver Müller, Jeffrey A. Hawkes, Stephen G. Kohler, Ulrike Dietrich, Marit Reigstad, and Maria L. Paulsen
Biogeosciences, 22, 601–623, https://doi.org/10.5194/bg-22-601-2025, https://doi.org/10.5194/bg-22-601-2025, 2025
Short summary
Short summary
Dissolved (DOM) and particulate organic matter (POM) are in constant exchange but are usually studied as distinct entities. We investigated the dynamics between POM and DOM in a sub-Arctic fjord across different seasons by conducting bi-monthly aggregation–dissolution experiments. During the productive period, POM concentrations increased in the experiment, and DOM molecules became more recalcitrant. During the winter period, POM concentrations decreased, and DOM molecules became more labile.
Alessio Leins, Danaé Bregnard, Andrea Vieth-Hillebrand, Stefanie Poetz, Florian Eichinger, Guillaume Cailleau, Pilar Junier, and Simona Regenspurg
Biogeosciences, 21, 5457–5479, https://doi.org/10.5194/bg-21-5457-2024, https://doi.org/10.5194/bg-21-5457-2024, 2024
Short summary
Short summary
Organic matter and microbial fluid analysis are rarely considered in the geothermal industry and research. However, they can have a significant impact on the efficiency of geothermal energy production. We found a high diversity of organic compound compositions in our samples and were able to differentiate them with respect to different sources (e.g. artificial and biogenic). Furthermore, the microbial diversity undergoes significant changes within the flow path of a geothermal power plant.
Colleen L. Hoffman, Patrick J. Monreal, Justine B. Albers, Alastair J. M. Lough, Alyson E. Santoro, Travis Mellett, Kristen N. Buck, Alessandro Tagliabue, Maeve C. Lohan, Joseph A. Resing, and Randelle M. Bundy
Biogeosciences, 21, 5233–5246, https://doi.org/10.5194/bg-21-5233-2024, https://doi.org/10.5194/bg-21-5233-2024, 2024
Short summary
Short summary
Hydrothermally derived iron can be transported kilometers away from deep-sea vents, representing a significant flux of vital micronutrients to the ocean. However, the mechanisms that support the stabilization of dissolved iron remain elusive. Using electrochemical, spectrometry, and genomic methods, we demonstrated that strong ligands exert an important control on iron in plumes, and high-affinity iron-binding siderophores were identified in several hydrothermal plume samples for the first time.
Chiara Santinelli, Silvia Valsecchi, Simona Retelletti Brogi, Giancarlo Bachi, Giovanni Checcucci, Mirco Guerrazzi, Elisa Camatti, Stefano Caserini, Arianna Azzellino, and Daniela Basso
Biogeosciences, 21, 5131–5141, https://doi.org/10.5194/bg-21-5131-2024, https://doi.org/10.5194/bg-21-5131-2024, 2024
Short summary
Short summary
Ocean liming is a technique proposed to mitigate ocean acidification. Every action we take has an impact on the environment and the effects on the invisible world are often overlooked. With this study, we show that lime addition impacts the dynamics of dissolved organic matter, one of the largest reservoirs of carbon on Earth, representing the main source of energy for marine microbes. Further studies to assess the impacts on marine ecosystems are therefore crucial before taking any action.
Mak A. Saito, Jaclyn K. Saunders, Matthew R. McIlvin, Erin M. Bertrand, John A. Breier, Margaret Mars Brisbin, Sophie M. Colston, Jaimee R. Compton, Tim J. Griffin, W. Judson Hervey, Robert L. Hettich, Pratik D. Jagtap, Michael Janech, Rod Johnson, Rick Keil, Hugo Kleikamp, Dagmar Leary, Lennart Martens, J. Scott P. McCain, Eli Moore, Subina Mehta, Dawn M. Moran, Jaqui Neibauer, Benjamin A. Neely, Michael V. Jakuba, Jim Johnson, Megan Duffy, Gerhard J. Herndl, Richard Giannone, Ryan Mueller, Brook L. Nunn, Martin Pabst, Samantha Peters, Andrew Rajczewski, Elden Rowland, Brian Searle, Tim Van Den Bossche, Gary J. Vora, Jacob R. Waldbauer, Haiyan Zheng, and Zihao Zhao
Biogeosciences, 21, 4889–4908, https://doi.org/10.5194/bg-21-4889-2024, https://doi.org/10.5194/bg-21-4889-2024, 2024
Short summary
Short summary
The ability to assess the functional capabilities of microbes in the environment is of increasing interest. Metaproteomics, the ability to measure proteins across microbial populations, has been increasing in capability and popularity in recent years. Here, an international team of scientists conducted an intercomparison study using samples collected from the North Atlantic Ocean and observed consistency in the peptides and proteins identified, their functions, and their taxonomic origins.
Devika Varma, Laura Villanueva, Nicole J. Bale, Pierre Offre, Gert-Jan Reichart, and Stefan Schouten
Biogeosciences, 21, 4875–4888, https://doi.org/10.5194/bg-21-4875-2024, https://doi.org/10.5194/bg-21-4875-2024, 2024
Short summary
Short summary
Archaeal hydroxylated tetraether lipids are increasingly used as temperature indicators in marine settings, but the factors influencing their distribution are still unclear. Analyzing membrane lipids of two thaumarchaeotal strains showed that the growth phase of the cultures does not affect the lipid distribution, but growth temperature profoundly affects the degree of cyclization of these lipids. Also, the abundance of these lipids is species-specific and is not influenced by temperature.
William Kew, Allison Myers-Pigg, Christine H. Chang, Sean M. Colby, Josie Eder, Malak M. Tfaily, Jeffrey Hawkes, Rosalie K. Chu, and James C. Stegen
Biogeosciences, 21, 4665–4679, https://doi.org/10.5194/bg-21-4665-2024, https://doi.org/10.5194/bg-21-4665-2024, 2024
Short summary
Short summary
Natural organic matter (NOM) is often studied via Fourier transform mass spectrometry (FTMS), which identifies organic molecules as mass spectra peaks. The intensity of peaks is data that is often discarded due to technical concerns. We review the theory behind these concerns and show they are supported empirically. However, simulations show that ecological analyses of NOM data that include FTMS peak intensities are often valid. This opens a path for robust use of FTMS peak intensities for NOM.
Evan R. Collins, Troy M. Ferland, Isla S. Castañeda, R. Bernhart Owen, Tim K. Lowenstein, Andrew S. Cohen, Robin W. Renaut, Molly D. O'Beirne, and Josef P. Werne
EGUsphere, https://doi.org/10.5194/egusphere-2024-3006, https://doi.org/10.5194/egusphere-2024-3006, 2024
Short summary
Short summary
Archaeal molecular fossils (tetraethers) have been used around the globe to track changes in climate. Little is known about archaeal response to environmental change in soda lakes, especially lakes influenced by hydrothermal inputs. For the first time in Lake Magadi, we show tetraethers tracking abrupt changes in methane and non-methane producers due to hydrothermal inputs to the lake. This study provides insight into the role of hydrothermal water sources and methane production in soda lakes.
Adam J. Fagan, Tatsuro Tanioka, Alyse A. Larkin, Jenna A. Lee, Nathan S. Garcia, and Adam C. Martiny
Biogeosciences, 21, 4239–4250, https://doi.org/10.5194/bg-21-4239-2024, https://doi.org/10.5194/bg-21-4239-2024, 2024
Short summary
Short summary
Climate change is anticipated to influence the biological pump by altering phytoplankton nutrient distribution. In our research, we collected measurements of particulate matter concentrations during two oceanographic field studies. We observed systematic variations in organic matter concentrations and ratios across the Atlantic Ocean. From statistical modeling, we determined that these variations are associated with differences in the availability of essential nutrients for phytoplankton growth.
Sebastian I. Cantarero, Edgart Flores, Harry Allbrook, Paulina Aguayo, Cristian A. Vargas, John E. Tamanaha, J. Bentley C. Scholz, Lennart T. Bach, Carolin R. Löscher, Ulf Riebesell, Balaji Rajagopalan, Nadia Dildar, and Julio Sepúlveda
Biogeosciences, 21, 3927–3958, https://doi.org/10.5194/bg-21-3927-2024, https://doi.org/10.5194/bg-21-3927-2024, 2024
Short summary
Short summary
Our study explores lipid remodeling in response to environmental stress, specifically how cell membrane chemistry changes. We focus on intact polar lipids in a phytoplankton community exposed to diverse stressors in a mesocosm experiment. The observed remodeling indicates acyl chain recycling for energy storage in intact polar lipids during stress, reallocating resources based on varying growth conditions. This understanding is essential to grasp the system's impact on cellular pools.
Mengke Wang, Peng Zhang, Huishan Li, Guisen Deng, Deliang Kong, Sifang Kong, and Junjian Wang
Biogeosciences, 21, 2691–2704, https://doi.org/10.5194/bg-21-2691-2024, https://doi.org/10.5194/bg-21-2691-2024, 2024
Short summary
Short summary
We developed and applied complementary analyses to characterize molecular-level carbon traits for water-grown and soil-grown fine roots. The adaptive strategy of developing more labile carbon in water-grown roots accelerated root decomposition and counteracted the decelerated effects of anoxia on decomposition, highlighting an indirect effect of environmental change on belowground carbon cycling.
Zhe-Xuan Zhang, Edith Parlanti, Christelle Anquetil, Jérôme Morelle, Anniet M. Laverman, Alexandre Thibault, Elisa Bou, and Arnaud Huguet
Biogeosciences, 21, 2227–2252, https://doi.org/10.5194/bg-21-2227-2024, https://doi.org/10.5194/bg-21-2227-2024, 2024
Short summary
Short summary
Bacterial tetraethers have important implications for palaeoclimate reconstruction. However, fundamental understanding of how these lipids are transformed from land to sea and which environmental factors influence their distributions is lacking. Here, we investigate the sources of brGDGTs and brGMGTs and the factors controlling their distributions in a large dataset (n=237). We propose a novel proxy (RIX) to trace riverine runoff, which is applicable in modern systems and in paleorecord.
Youcheng Bai, Marie-Alexandrine Sicre, Jian Ren, Vincent Klein, Haiyan Jin, and Jianfang Chen
Biogeosciences, 21, 689–709, https://doi.org/10.5194/bg-21-689-2024, https://doi.org/10.5194/bg-21-689-2024, 2024
Short summary
Short summary
Algal biomarkers were used to assess sea ice and pelagic algal production across the western Arctic Ocean with changing sea-ice conditions. They show three distinct areas along with a marked latitudinal gradient of sea ice over pelagic algal production in surface sediments that are reflected by the H-Print index. Our data also show that efficient grazing consumption accounted for the dramatic decrease of diatom-derived biomarkers in sediments compared to that of particulate matter.
Hanxiao Wang, Zhifei Liu, Jiaying Li, Baozhi Lin, Yulong Zhao, Xiaodong Zhang, Junyuan Cao, Jingwen Zhang, Hongzhe Song, and Wenzhuo Wang
Biogeosciences, 20, 5109–5123, https://doi.org/10.5194/bg-20-5109-2023, https://doi.org/10.5194/bg-20-5109-2023, 2023
Short summary
Short summary
The sinking of zooplankton fecal pellets is a key process in the marine biological carbon pump. This study presents carbon export of four shapes of fecal pellets from two time-series sediment traps in the South China Sea. The results show that the sinking fate of fecal pellets is regulated by marine primary productivity, deep-dwelling zooplankton community, and deep-sea currents in the tropical marginal sea, thus providing a new perspective for exploring the carbon cycle in the world ocean.
Rebecca J. Chmiel, Riss M. Kell, Deepa Rao, Dawn M. Moran, Giacomo R. DiTullio, and Mak A. Saito
Biogeosciences, 20, 3997–4027, https://doi.org/10.5194/bg-20-3997-2023, https://doi.org/10.5194/bg-20-3997-2023, 2023
Short summary
Short summary
Cobalt is an important micronutrient for plankton, yet it is often scarce throughout the oceans. A 2017/2018 expedition to coastal Antarctica, including regions of the Amundsen Sea and the Ross Sea, discovered lower concentrations of cobalt compared to two past expeditions in 2005 and 2006, particularly for the type of cobalt preferred as a nutrient by phytoplankton. This loss may be due to changing inputs of other nutrients, causing higher uptake of cobalt by plankton over the last decade.
Emily B. Graham, Hyun-Seob Song, Samantha Grieger, Vanessa A. Garayburu-Caruso, James C. Stegen, Kevin D. Bladon, and Allison N. Myers-Pigg
Biogeosciences, 20, 3449–3457, https://doi.org/10.5194/bg-20-3449-2023, https://doi.org/10.5194/bg-20-3449-2023, 2023
Short summary
Short summary
Intensifying wildfires are increasing pyrogenic organic matter (PyOM) production and its impact on water quality. Recent work indicates that PyOM may have a greater impact on aquatic biogeochemistry than previously assumed, driven by higher bioavailability. We provide a full assessment of the potential bioavailability of PyOM across its chemical spectrum. We indicate that PyOM can be actively transformed within the river corridor and, therefore, may be a growing source of riverine C emissions.
Nora Richter, Ellen C. Hopmans, Danica Mitrović, Pedro M. Raposeiro, Vítor Gonçalves, Ana C. Costa, Linda A. Amaral-Zettler, Laura Villanueva, and Darci Rush
Biogeosciences, 20, 2065–2098, https://doi.org/10.5194/bg-20-2065-2023, https://doi.org/10.5194/bg-20-2065-2023, 2023
Short summary
Short summary
Bacteriohopanepolyols (BHPs) are a diverse class of lipids produced by bacteria across a wide range of environments. This study characterizes the diversity of BHPs in lakes and coastal lagoons in the Azores Archipelago, as well as a co-culture enriched for methanotrophs. We highlight the potential of BHPs as taxonomic markers for bacteria associated with certain ecological niches, which can be preserved in sedimentary records.
Andrea Scheibe, Carlos A. Sierra, and Marie Spohn
Biogeosciences, 20, 827–838, https://doi.org/10.5194/bg-20-827-2023, https://doi.org/10.5194/bg-20-827-2023, 2023
Short summary
Short summary
We explored carbon cycling in soils in three climate zones in Chile down to a depth of 6 m, using carbon isotopes. Our results show that microbial activity several meters below the soil surface is mostly fueled by recently fixed carbon and that strong decomposition of soil organic matter only occurs in the upper decimeters of the soils. The study shows that different layers of the critical zone are tightly connected and that processes in the deep soil depend on recently fixed carbon.
Melissa Sophia Schwab, Hannah Gies, Chantal Valérie Freymond, Maarten Lupker, Negar Haghipour, and Timothy Ian Eglinton
Biogeosciences, 19, 5591–5616, https://doi.org/10.5194/bg-19-5591-2022, https://doi.org/10.5194/bg-19-5591-2022, 2022
Short summary
Short summary
The majority of river studies focus on headwater or floodplain systems, while often neglecting intermediate river segments. Our study on the subalpine Sihl River bridges the gap between streams and lowlands and demonstrates that moderately steep river segments are areas of significant instream alterations, modulating the export of organic carbon over short distances.
Lisa Noll, Shasha Zhang, Qing Zheng, Yuntao Hu, Florian Hofhansl, and Wolfgang Wanek
Biogeosciences, 19, 5419–5433, https://doi.org/10.5194/bg-19-5419-2022, https://doi.org/10.5194/bg-19-5419-2022, 2022
Short summary
Short summary
Cleavage of proteins to smaller nitrogen compounds allows microorganisms and plants to exploit the largest nitrogen reservoir in soils and is considered the bottleneck in soil organic nitrogen cycling. Results from soils covering a European transect show that protein turnover is constrained by soil geochemistry, shifts in climate and associated alterations in soil weathering and should be considered as a driver of soil nitrogen availability with repercussions on carbon cycle processes.
Muhammed Fatih Sert, Helge Niemann, Eoghan P. Reeves, Mats A. Granskog, Kevin P. Hand, Timo Kekäläinen, Janne Jänis, Pamela E. Rossel, Bénédicte Ferré, Anna Silyakova, and Friederike Gründger
Biogeosciences, 19, 2101–2120, https://doi.org/10.5194/bg-19-2101-2022, https://doi.org/10.5194/bg-19-2101-2022, 2022
Short summary
Short summary
We investigate organic matter composition in the Arctic Ocean water column. We collected seawater samples from sea ice to deep waters at six vertical profiles near an active hydrothermal vent and its plume. In comparison to seawater, we found that the organic matter in waters directly affected by the hydrothermal plume had different chemical composition. We suggest that hydrothermal processes may influence the organic matter distribution in the deep ocean.
Charlotte Haugk, Loeka L. Jongejans, Kai Mangelsdorf, Matthias Fuchs, Olga Ogneva, Juri Palmtag, Gesine Mollenhauer, Paul J. Mann, P. Paul Overduin, Guido Grosse, Tina Sanders, Robyn E. Tuerena, Lutz Schirrmeister, Sebastian Wetterich, Alexander Kizyakov, Cornelia Karger, and Jens Strauss
Biogeosciences, 19, 2079–2094, https://doi.org/10.5194/bg-19-2079-2022, https://doi.org/10.5194/bg-19-2079-2022, 2022
Short summary
Short summary
Buried animal and plant remains (carbon) from the last ice age were freeze-locked in permafrost. At an extremely fast eroding permafrost cliff in the Lena Delta (Siberia), we found this formerly frozen carbon well preserved. Our results show that ongoing degradation releases substantial amounts of this carbon, making it available for future carbon emissions. This mobilisation at the studied cliff and also similarly eroding sites bear the potential to affect rivers and oceans negatively.
Aleksandar I. Goranov, Andrew S. Wozniak, Kyle W. Bostick, Andrew R. Zimmerman, Siddhartha Mitra, and Patrick G. Hatcher
Biogeosciences, 19, 1491–1514, https://doi.org/10.5194/bg-19-1491-2022, https://doi.org/10.5194/bg-19-1491-2022, 2022
Short summary
Short summary
Wildfire-derived molecules are ubiquitous in the aquatic environment, but their biological fate remains understudied. We have evaluated the compositional changes that occur to wildfire-derived molecules after incubation with soil microbes. We observe a significant degradation but also a production of numerous new labile molecules. Our results indicate that wildfire-derived molecules can be broken down and the carbon and nitrogen therein can be incorporated into microbial food webs.
Edgart Flores, Sebastian I. Cantarero, Paula Ruiz-Fernández, Nadia Dildar, Matthias Zabel, Osvaldo Ulloa, and Julio Sepúlveda
Biogeosciences, 19, 1395–1420, https://doi.org/10.5194/bg-19-1395-2022, https://doi.org/10.5194/bg-19-1395-2022, 2022
Short summary
Short summary
In this study, we investigate the chemical diversity and abundance of microbial lipids as markers of organic matter sources in the deepest points of the Atacama Trench sediments and compare them to similar lipid stocks in shallower surface sediments and in the overlying water column. We evaluate possible organic matter provenance and some potential chemical adaptations of the in situ microbial community to the extreme conditions of high hydrostatic pressure in hadal realm.
Birgit Gaye, Niko Lahajnar, Natalie Harms, Sophie Anna Luise Paul, Tim Rixen, and Kay-Christian Emeis
Biogeosciences, 19, 807–830, https://doi.org/10.5194/bg-19-807-2022, https://doi.org/10.5194/bg-19-807-2022, 2022
Short summary
Short summary
Amino acids were analyzed in a large number of samples of particulate and dissolved organic matter from coastal regions and the open ocean. A statistical analysis produced two new biogeochemical indicators. An indicator of sinking particle and sediment degradation (SDI) traces the degradation of organic matter from the surface waters into the sediments. A second indicator shows the residence time of suspended matter in the ocean (RTI).
Zoë R. van Kemenade, Laura Villanueva, Ellen C. Hopmans, Peter Kraal, Harry J. Witte, Jaap S. Sinninghe Damsté, and Darci Rush
Biogeosciences, 19, 201–221, https://doi.org/10.5194/bg-19-201-2022, https://doi.org/10.5194/bg-19-201-2022, 2022
Short summary
Short summary
Anaerobic ammonium oxidation (anammox) is an important nitrogen-removal process in the ocean. We assess the distribution of bacteriohopanetetrol-x (BHT-x), used to trace past anammox, along a redox gradient in the water column of the Benguela upwelling system. BHT-x / BHT ratios of >0.18 correspond to the presence of living anammox bacteria and oxygen levels <50 μmol L−1. This allows for a more robust application of BHT-x to trace past marine anammox and deoxygenation in dynamic marine systems.
Jia-Jang Hung, Ching-Han Tung, Zong-Ying Lin, Yuh-ling Lee Chen, Shao-Hung Peng, Yen-Huei Lin, and Li-Shan Tsai
Biogeosciences, 18, 5141–5162, https://doi.org/10.5194/bg-18-5141-2021, https://doi.org/10.5194/bg-18-5141-2021, 2021
Short summary
Short summary
We report measured active and passive fluxes and their controlling mechanisms in the northern South China Sea (NSCS). The total fluxes were higher than most reports in open oceans, indicating the significance of NSCS in atmospheric CO2 uptake and in storing that CO2 in the ocean’s interior. Winter cooling and extreme events enhanced nutrient availability and elevated fluxes. Global warming may have profound impacts on reducing ocean’s uptake and storage of CO2 in subtropical–tropical oceans.
Jens Daniel Müller, Bernd Schneider, Ulf Gräwe, Peer Fietzek, Marcus Bo Wallin, Anna Rutgersson, Norbert Wasmund, Siegfried Krüger, and Gregor Rehder
Biogeosciences, 18, 4889–4917, https://doi.org/10.5194/bg-18-4889-2021, https://doi.org/10.5194/bg-18-4889-2021, 2021
Short summary
Short summary
Based on profiling pCO2 measurements from a field campaign, we quantify the biomass production of a cyanobacteria bloom in the Baltic Sea, the export of which would foster deep water deoxygenation. We further demonstrate how this biomass production can be accurately reconstructed from long-term surface measurements made on cargo vessels in combination with modelled temperature profiles. This approach enables a better understanding of a severe concern for the Baltic’s good environmental status.
Alexander Braun, Marina Spona-Friedl, Maria Avramov, Martin Elsner, Federico Baltar, Thomas Reinthaler, Gerhard J. Herndl, and Christian Griebler
Biogeosciences, 18, 3689–3700, https://doi.org/10.5194/bg-18-3689-2021, https://doi.org/10.5194/bg-18-3689-2021, 2021
Short summary
Short summary
It is known that CO2 fixation by photoautotrophic organisms is the major sink from the atmosphere. While biologists are aware that CO2 fixation also occurs in heterotrophic organisms, this route of inorganic carbon, and its quantitative role, is hardly recognized in biogeochemistry. We demonstrate that a considerable amount of CO2 is fixed annually through anaplerotic reactions in heterotrophic organisms, and a significant quantity of inorganic carbon is temporally sequestered in biomass.
Jonathan H. Raberg, David J. Harning, Sarah E. Crump, Greg de Wet, Aria Blumm, Sebastian Kopf, Áslaug Geirsdóttir, Gifford H. Miller, and Julio Sepúlveda
Biogeosciences, 18, 3579–3603, https://doi.org/10.5194/bg-18-3579-2021, https://doi.org/10.5194/bg-18-3579-2021, 2021
Short summary
Short summary
BrGDGT lipids are a proxy for temperature in lake sediments, but other parameters like pH can influence them, and seasonality can affect the temperatures they record. We find a warm-season bias at 43 new high-latitude sites. We also present a new method that deconvolves the effects of temperature, pH, and conductivity and generate global calibrations for these variables. Our study provides new paleoclimate tools, insight into brGDGTs at the biochemical level, and a new method for future study.
Charlotte L. Spencer-Jones, Erin L. McClymont, Nicole J. Bale, Ellen C. Hopmans, Stefan Schouten, Juliane Müller, E. Povl Abrahamsen, Claire Allen, Torsten Bickert, Claus-Dieter Hillenbrand, Elaine Mawbey, Victoria Peck, Aleksandra Svalova, and James A. Smith
Biogeosciences, 18, 3485–3504, https://doi.org/10.5194/bg-18-3485-2021, https://doi.org/10.5194/bg-18-3485-2021, 2021
Short summary
Short summary
Long-term ocean temperature records are needed to fully understand the impact of West Antarctic Ice Sheet collapse. Glycerol dialkyl glycerol tetraethers (GDGTs) are powerful tools for reconstructing ocean temperature but can be difficult to apply to the Southern Ocean. Our results show active GDGT synthesis in relatively warm depths of the ocean. This research improves the application of GDGT palaeoceanographic proxies in the Southern Ocean.
Alec W. Armstrong, Leanne Powers, and Michael Gonsior
Biogeosciences, 18, 3367–3390, https://doi.org/10.5194/bg-18-3367-2021, https://doi.org/10.5194/bg-18-3367-2021, 2021
Short summary
Short summary
Living things decay into organic matter, which can dissolve into water (like tea brewing). Tea receives its color by absorbing light. Similarly, this material absorbs light, which can then cause chemical reactions that change it. By measuring changes in these optical properties, we found that materials from some places are more sensitive to light than others. Comparing sensitivity to light helps us understand where these materials come from and what happens as they move through water.
Ben J. Fisher, Johan C. Faust, Oliver W. Moore, Caroline L. Peacock, and Christian März
Biogeosciences, 18, 3409–3419, https://doi.org/10.5194/bg-18-3409-2021, https://doi.org/10.5194/bg-18-3409-2021, 2021
Short summary
Short summary
Organic carbon can be protected from microbial degradation in marine sediments through association with iron minerals on 1000-year timescales. Despite the importance of this carbon sink, our spatial and temporal understanding of iron-bound organic carbon interactions globally is poor. Here we show that caution must be applied when comparing quantification of iron-bound organic carbon extracted by different methods as the extraction strength and method specificity can be highly variable.
Mark A. Stevenson, Suzanne McGowan, Emma J. Pearson, George E. A. Swann, Melanie J. Leng, Vivienne J. Jones, Joseph J. Bailey, Xianyu Huang, and Erika Whiteford
Biogeosciences, 18, 2465–2485, https://doi.org/10.5194/bg-18-2465-2021, https://doi.org/10.5194/bg-18-2465-2021, 2021
Short summary
Short summary
We link detailed stable isotope and biomarker analyses from the catchments of three Arctic upland lakes on Disko Island (West Greenland) to a recent dated sediment core to understand how carbon cycling has changed over the past ~500 years. We find that the carbon deposited in sediments in these upland lakes is predominately sourced from in-lake production due to the catchment's limited terrestrial vegetation and elevation and that recent increases in algal production link with climate change.
Nadine T. Smit, Laura Villanueva, Darci Rush, Fausto Grassa, Caitlyn R. Witkowski, Mira Holzheimer, Adriaan J. Minnaard, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 18, 1463–1479, https://doi.org/10.5194/bg-18-1463-2021, https://doi.org/10.5194/bg-18-1463-2021, 2021
Short summary
Short summary
Soils from an everlasting fire (gas seep) in Sicily, Italy, reveal high relative abundances of novel uncultivated mycobacteria and unique 13C-depleted mycocerosic acids (multi-methyl branched fatty acids) close to the main gas seep. Our results imply that mycocerosic acids in combination with their depleted δ13C values offer a new biomarker tool to study the role of soil mycobacteria as hydrocarbon consumers in the modern and past global carbon cycle.
Marcus P. S. Badger
Biogeosciences, 18, 1149–1160, https://doi.org/10.5194/bg-18-1149-2021, https://doi.org/10.5194/bg-18-1149-2021, 2021
Short summary
Short summary
Reconstructing ancient atmospheric CO2 is an important aim of palaeoclimate science in order to understand the Earth's climate system. One method, the alkenone proxy based on molecular fossils of coccolithophores, has been recently shown to be ineffective at low-to-moderate CO2 levels. In this paper I show that this is likely due to changes in the biogeochemistry of the coccolithophores when there is low carbon availability, but for much of the Cenozoic the alkenone proxy should have utility.
Loes G. J. van Bree, Francien Peterse, Allix J. Baxter, Wannes De Crop, Sigrid van Grinsven, Laura Villanueva, Dirk Verschuren, and Jaap S. Sinninghe Damsté
Biogeosciences, 17, 5443–5463, https://doi.org/10.5194/bg-17-5443-2020, https://doi.org/10.5194/bg-17-5443-2020, 2020
Short summary
Short summary
Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are used as a paleothermometer based on their temperature dependence in global soils, but aquatic production complicates their use in lakes. BrGDGTs in the water column of Lake Chala, East Africa, respond to oxygen conditions and mixing. Changes in their signal can be linked to bacterial community composition rather than membrane adaptation to changing conditions. Their integrated signal in the sediment reflects mean air temperature.
Alexandra N. Loginova, Andrew W. Dale, Frédéric A. C. Le Moigne, Sören Thomsen, Stefan Sommer, David Clemens, Klaus Wallmann, and Anja Engel
Biogeosciences, 17, 4663–4679, https://doi.org/10.5194/bg-17-4663-2020, https://doi.org/10.5194/bg-17-4663-2020, 2020
Short summary
Short summary
We measured dissolved organic carbon (DOC), nitrogen (DON) and matter (DOM) optical properties in pore waters and near-bottom waters of the eastern tropical South Pacific off Peru. The difference between diffusion-driven and net fluxes of DOC and DON and qualitative changes in DOM optical properties suggested active microbial utilisation of the released DOM at the sediment–water interface. Our results suggest that the sediment release of DOM contributes to microbial processes in the area.
Gerard J. M. Versteegh, Alexander J. P. Houben, and Karin A. F. Zonneveld
Biogeosciences, 17, 3545–3561, https://doi.org/10.5194/bg-17-3545-2020, https://doi.org/10.5194/bg-17-3545-2020, 2020
Short summary
Short summary
Anoxic sediments mostly contain much more organic matter than oxic ones, and therefore organic matter in anoxic settings is often considered to be preserved better than in oxic settings. However, through the analysis of the same fossil dinoflagellate cyst species from both oxic and anoxic settings, we show that at a molecular level the preservation in the oxic sediments may be better since in the anoxic setting the cyst macromolecule has been altered by postdepositional modification.
Jingjing Guo, Miriam Glendell, Jeroen Meersmans, Frédérique Kirkels, Jack J. Middelburg, and Francien Peterse
Biogeosciences, 17, 3183–3201, https://doi.org/10.5194/bg-17-3183-2020, https://doi.org/10.5194/bg-17-3183-2020, 2020
Short summary
Short summary
The fluxes of soil organic carbon (OC) transport from land to sea are poorly constrained, mostly due to the lack of a specific tracer for soil OC. Here we evaluate the use of specific molecules derived from soil bacteria as a tracer for soil OC in a small river catchment. We find that the initial soil signal is lost upon entering the aquatic environment. However, the local environmental history of the catchment is reflected by these molecules in the lake sediments that act as their sink.
Zhuo-Yi Zhu, Joanne Oakes, Bradley Eyre, Youyou Hao, Edwin Sien Aun Sia, Shan Jiang, Moritz Müller, and Jing Zhang
Biogeosciences, 17, 2473–2485, https://doi.org/10.5194/bg-17-2473-2020, https://doi.org/10.5194/bg-17-2473-2020, 2020
Short summary
Short summary
Samples were collected in August 2016 in the Rajang River and its estuary, with tropical forest in the river basin and peatland in the estuary. Organic matter composition was influenced by transportation in the river basin, whereas peatland added clear biodegraded parts to the fluvial organic matter, which implies modification of the initial lability and/or starting points in the subsequent degradation and alternation processes after the organic matter enters the sea.
Wenjie Xiao, Yasong Wang, Yongsheng Liu, Xi Zhang, Linlin Shi, and Yunping Xu
Biogeosciences, 17, 2135–2148, https://doi.org/10.5194/bg-17-2135-2020, https://doi.org/10.5194/bg-17-2135-2020, 2020
Short summary
Short summary
The hadal zone (6–11 km depth) is the least explored habitat on Earth. We studied microbial branched glycerol dialkyl glycerol tetraethers (brGDGTs) in the Challenger Deep, Mariana Trench. One unique feature is the strong predominance of 6-methyl brGDGT, which likely reflects an adaption of brGDGT-producing bacteria to alkaline seawater and low temperature. BrGDGTs, with elemental and isotopic data, suggest an autochthonous product for brGDGT. A new approach is proposed for brGDGT sourcing.
Yuge Bai, Edisson Subdiaga, Stefan B. Haderlein, Heike Knicker, and Andreas Kappler
Biogeosciences, 17, 683–698, https://doi.org/10.5194/bg-17-683-2020, https://doi.org/10.5194/bg-17-683-2020, 2020
Short summary
Short summary
Biogeochemical processes of SOM are key for greenhouse gas emission and water quality. We extracted SOM by water or by NaOH–HCl under oxic–anoxic conditions. Chemical and anoxic extractions lead to higher SOM electron exchange capacities, resulting in stimulation of microbial Fe(III) reduction. Therefore, aqueous pH-neutral SOM extracts should be used to reflect environmental SOM redox processes, and artifacts of chemical extractions need to be considered when evaluating SOM redox processes.
Yan Shen, Volker Thiel, Pablo Suarez-Gonzalez, Sebastiaan W. Rampen, and Joachim Reitner
Biogeosciences, 17, 649–666, https://doi.org/10.5194/bg-17-649-2020, https://doi.org/10.5194/bg-17-649-2020, 2020
Short summary
Short summary
Today, sterols are widespread in plants, animals, and fungi but are almost absent in the oldest rocks. Microbial mats, representing the earliest complex ecosystems on Earth, were omnipresent in Precambrian marine environments and may have degraded the sterols at that time. Here we analyze the distribution of sterols through a microbial mat. This provides insight into how variations in biological and nonbiological factors affect the preservation of sterols in modern and ancient microbial mats.
Sarah Coffinet, Travis B. Meador, Lukas Mühlena, Kevin W. Becker, Jan Schröder, Qing-Zeng Zhu, Julius S. Lipp, Verena B. Heuer, Matthew P. Crump, and Kai-Uwe Hinrichs
Biogeosciences, 17, 317–330, https://doi.org/10.5194/bg-17-317-2020, https://doi.org/10.5194/bg-17-317-2020, 2020
Short summary
Short summary
This study deals with two membrane lipids called BDGTs and PDGTs. Membrane lipids are molecules forming the cell envelope of all organisms. Different organisms produce different lipids thus they can be used to detect the presence of specific organisms in the environment. We analyzed the structure of these new lipids and looked for potential producers. We found that they are likely made by microbes emitting methane below the sediment surface and could be used to track these specific microbes.
Ying Wu, Kun Zhu, Jing Zhang, Moritz Müller, Shan Jiang, Aazani Mujahid, Mohd Fakharuddin Muhamad, and Edwin Sien Aun Sia
Biogeosciences, 16, 4517–4533, https://doi.org/10.5194/bg-16-4517-2019, https://doi.org/10.5194/bg-16-4517-2019, 2019
Short summary
Short summary
Our understanding of terrestrial organic matter (TOM) in tropical peat-draining rivers remains limited, especially in Southeast Asia. We explored the characteristics of TOM via bulk parameters and lignin phenols of sediment in Malaysia. This showed that the most important plant source of the organic matter in these rivers is woody angiosperm C3 plants with limited diagenetic alteration. This slower degradation of TOM may be a link to higher total nitrogen content, especially for the small river.
Cited articles
Bednarczyk, A., Hernandez, T. C., Schaeffer, P., Adam, P., Talbot, H. M., Farrimond, P., Riboulleau, A., Largeau, C., Derenne, S., Rohmer, M., and Albrecht, P.: 32,35-Anhydrobacteriohopanetetrol: an unusual bacteriohopanepolyol widespread in recent and past environments, Organic Geochem., 36, 673–677, https://doi.org/10.1016/j.orggeochem.2004.10.014, 2005.
Bischoff, J.: Microbial communities and their response to Pleistocene and Holocene climate variabilities in the Russian Arctic, Ph.D. thesis, 2013.
Bischoff, J., Mangelsdorf, K., Gattinger, A., Schloter, M., Kurchatova, A. N., Herzschuh, U., and Wagner, D.: Response of methanogenic archaea to Late Pleistocene and Holocene climate changes in the Siberian Arctic, Global Biogeochem. Cy., 27, 305–317, https://doi.org/10.1029/2011GB004238, 2013.
Bligh, E. G. and Dyer, W. J.: A rapid method of total lipid extraction and purification, Can. J. Biochem. Physiol., 37, 911–917, https://doi.org/10.1139/o59-099, 1959.
Blumenberg, M., Seifert, R., Kasten, S., Bahlmann, E., and Michaelis, W.: Euphotic zone bacterioplankton sources major sedimentary bacteriohopanepolyols in the Holocene Black Sea, Geochim. Cosmochim. Acta, 73, 750–766, https://doi.org/10.1016/j.gca.2008.11.005, 2009.
Blumenberg, M., Mollenhauer, G., Zabel, M., Reimer, A., and Thiel, V.: Decoupling of bio- and geohopanoids in sediments of the Benguela Upwelling System (BUS), Organic Geochem., 41, 1119–1129, https://doi.org/10.1016/j.orggeochem.2010.06.005, 2010.
Blumenberg, M., Berndmeyer, C., Moros, M., Muschalla, M., Schmale, O., and Thiel, V.: Bacteriohopanepolyols record stratification, nitrogen fixation and other biogeochemical perturbations in Holocene sediments of the central Baltic Sea, Biogeosciences, 10, 2725–2735, https://doi.org/10.5194/bg-10-2725-2013, 2013.
Bradley, A. S., Pearson, A., Sáenz, J. P., and Marx, C. J.: Adenosylhopane: The first intermediate in hopanoid side chain biosynthesis, Organic Geochem., 41, 1075–1081, https://doi.org/10.1016/j.orggeochem.2010.07.003, 2010.
Cooke, M. P., Talbot, H. M., and Farrimond, P.: Bacterial populations recorded in bacteriohopanepolyol distributions in soils from Northern England, Organic Geochem., 39, 1347–1358, https://doi.org/10.1016/j.orggeochem.2008.05.003, 2008a.
Cooke, M. P., Talbot, H. M., and Wagner, T.: Tracking soil organic carbon transport to continental margin sediments using soil-specific hopanoid biomarkers: A case study from the Congo fan (ODP site 1075), Organic Geochem., 39, 965–971, https://doi.org/10.1016/j.orggeochem.2008.03.009, 2008b.
Cooke, M. P., van Dongen, B. E., Talbot, H. M., Semiletov, I., Shakhova, N., Guo, L., and Gustafsson, O.: Bacteriohopanepolyol biomarker composition of organic matter exported to the Arctic Ocean by seven of the major Arctic rivers, Organic Geochem., 40, 1151–1159, https://doi.org/10.1016/j.orggeochem.2009.07.014, 2009.
Coolen, M. J. L., Talbot, H. M., Abbas, B. A., Ward, C., Schouten, S., Volkman, J. K., and Damsté, J. S. S.: Sources for sedimentary bacteriohopanepolyols as revealed by 16S rDNA stratigraphy, Environ. Microbiol., 10, 1783–1803, https://doi.org/10.1111/j.1462-2920.2008.01601.x, 2008.
De Jonge, C., Stadnitskaia, A., Hopmans, E. C., Cherkashov, G., Fedotov, A., and Sinninghe Damsté, J. S.: In situ produced branched glycerol dialkyl glycerol tetraethers in suspended particulate matter from the Yenisei River, Eastern Siberia, Geochim. Cosmochim. Acta, 125, 476–491, https://doi.org/10.1016/j.gca.2013.10.031, 2014.
De Jonge, C., Stadnitskaia, A., Hopmans, E. C., Cherkashov, G., Fedotov, A., Streletskaya, I. D., Vasiliev, A. A., and Sinninghe Damsté, J. S.: Drastic changes in the distribution of branched tetraether lipids in suspended matter and sediments from the Yenisei River and Kara Sea (Siberia): Implications for the use of brGDGT-based proxies in coastal marine sediments, Geochim. Cosmochim. Acta, 165, 200–225, https://doi.org/10.1016/j.gca.2015.05.044, 2015.
De Jonge, C., Talbot, H. M., Bischoff, J., Stadnitskaia, A., Cherkashov, G., and Sinninghe Damsté, J. S.: Bacteriohopanepolyol distribution in Yenisei River and Kara Sea suspended particulate matter and sediments traces terrigenous organic matter input, Geochim. Cosmochim. Acta, 174, 85–101, https://doi.org/10.1016/j.gca.2015.11.008, 2016.
Dittmar, T. and Kattner, G.: The biogeochemistry of the river and shelf ecosystem of the Arctic Ocean: a review, Mar. Chem., 83, 103–120, https://doi.org/10.1016/S0304-4203(03)00105-1, 2003.
Doğrul Selver, A., Talbot, H. M., Gustafsson, O., Boult, S., and van Dongen, B. E.: Soil organic matter transport along an sub-Arctic river-sea transect, Organic Geochem., 51, 63–72, https://doi.org/10.1016/j.orggeochem.2012.08.002, 2012.
Doğrul Selver, A., Sparkes, R. B., Bischoff, J., Talbot, H. M., Gustafsson, Ö., Semiletov, I. P., Dudarev, O. V., Boult, S., and van Dongen, B. E.: Distributions of bacterial and archaeal membrane lipids in surface sediments reflect differences in input and loss of terrestrial organic carbon along a cross-shelf Arctic transect, Organic Geochem., 83–84, 16–26, https://doi.org/10.1016/j.orggeochem.2015.01.005, 2015.
Drake, T. W., Wickland, K. P., Spencer, R. G. M., McKnight, D. M., and Striegl, R. G.: Ancient low-molecular-weight organic acids in permafrost fuel rapid carbon dioxide production upon thaw, P. Natl. Acad. Sci., 112, 13946–13951, https://doi.org/10.1073/pnas.1511705112, 2015.
Drenzek, N. J., Montluçon, D. B., Yunker, M. B., Macdonald, R. W., and Eglinton, T. I.: Constraints on the origin of sedimentary organic carbon in the Beaufort Sea from coupled molecular 13C and 14C measurements, Mar. Chem., 103, 146–162, https://doi.org/10.1016/j.marchem.2006.06.017, 2007.
Feng, X., Vonk, J. E., van Dongen, B. E., Gustafsson, Ö., Semiletov, I. P., Dudarev, O. V., Wang, Z., Montluçon, D. B., Wacker, L., and Eglinton, T. I.: Differential mobilization of terrestrial carbon pools in Eurasian Arctic river basins, P. Natl. Acad. Sci., 110, 14168–14173, https://doi.org/10.1073/pnas.1307031110, 2013.
Feng, X., Gustafsson, Ö., Holmes, R. M., Vonk, J. E., van Dongen, B. E., Semiletov, I. P., Dudarev, O. V., Yunker, M. B., Macdonald, R. W., Montluçon, D. B., and Eglinton, T. I.: Multi-molecular tracers of terrestrial carbon transfer across the pan-Arctic: comparison of hydrolyzable components with plant wax lipids and lignin phenols, Biogeosciences, 12, 4841–4860, https://doi.org/10.5194/bg-12-4841-2015, 2015.
Gong, L., Wang, H., Xiang, X., Qiu, X., Liu, Q., Wang, R., Zhao, R., and Wang, C.: pH Shaping the Composition of sqhC-Containing Bacterial Communities, Geomicrobiol. J., 32, 433–444, https://doi.org/10.1080/01490451.2014.950363, 2015.
Goñi, M. A., Yunker, M. B., Macdonald, R. W., and Eglinton, T. I.: The supply and preservation of ancient and modern components of organic carbon in the Canadian Beaufort Shelf of the Arctic Ocean, Mar. Chem., 93, 53–73, https://doi.org/10.1016/j.marchem.2004.08.001, 2005.
Gordeev, V.: A reassessment of the Eurasian river input of water, sediment, major elements, and nutrients to the Arctic Ocean, Am. J. Sci., 296, 664–691, https://doi.org/10.2475/ajs.296.6.664, 1996.
Gordeev, V. V.: Fluvial sediment flux to the Arctic Ocean, Geomorphology, 80, 94–104, https://doi.org/10.1016/j.geomorph.2005.09.008, 2006.
Grigoriev, M.: Russian-German cooperation SYSTEM LAPTEV SEA: the expedition LENA 2002, Tech. rep., 2003.
Guo, L., Semiletov, I., Gustafsson, Ö., Ingri, J., Andersson, P., Dudarev, O., and White, D.: Characterization of Siberian Arctic coastal sediments: Implications for terrestrial organic carbon export, Global Biogeochem. Cy., 18, GB1036, https://doi.org/10.1029/2003GB002087, 2004.
Gustafsson, Ö., van Dongen, B. E., Vonk, J. E., Dudarev, O. V., and Semiletov, I. P.: Widespread release of old carbon across the Siberian Arctic echoed by its large rivers, Biogeosciences, 8, 1737–1743, https://doi.org/10.5194/bg-8-1737-2011, 2011.
Handley, L., Talbot, H. M., Cooke, M. P., Anderson, K., and Wagner, T.: Novel records of past methane emission events from the Congo and Amazon fans, Geochim. Cosmochim. Acta, 74, A379–A379, 2010.
Harris, D., Horwáth, W. R., and van Kessel, C.: Acid fumigation of soils to remove carbonates prior to total organic carbon or CARBON-13 isotopic analysis, Soil Sci. Soc. Am. J., 65, 1853–1856, https://doi.org/10.2136/sssaj2001.1853, 2001.
Hayes, J. M.: Factors controlling 13C contents of sedimentary organic compounds: Principles and evidence, Mar. Geol., 113, 111–125, https://doi.org/10.1016/0025-3227(93)90153-M, 1993.
Höfle, S., Rethemeyer, J., Mueller, C. W., and John, S.: Organic matter composition and stabilization in a polygonal tundra soil of the Lena Delta, Biogeosciences, 10, 3145–3158, https://doi.org/10.5194/bg-10-3145-2013, 2013.
Höfle, S. T., Kusch, S., Talbot, H. M., Mollenhauer, G., Zubrzycki, S., Burghardt, S., and Rethemeyer, J.: Characterisation of bacterial populations in Arctic permafrost soils using bacteriohopanepolyols, Organic Geochem., 88, 1–16, https://doi.org/10.1016/j.orggeochem.2015.08.002, 2015.
Holmes, R. M., McClelland, J. W., Peterson, B. J., Tank, S. E., Bulygina, E., Eglinton, T. I., Gordeev, V. V., Gurtovaya, T. Y., Raymond, P. A., Repeta, D. J., Staples, R., Striegl, R. G., Zhulidov, A. V., and Zimov, S. A.: Seasonal and Annual Fluxes of Nutrients and Organic Matter from Large Rivers to the Arctic Ocean and Surrounding Seas, Estuar. Coasts, 35, 369–382, https://doi.org/10.1007/s12237-011-9386-6, 2012.
Holmes, R. M., Coe, M. T., Fiske, G. J., Gurtovaya, T., McClelland, J. W., Shiklomanov, A. I., Spencer, R. G. M., Tank, S. E., and Zhulidov, A. V.: Climate Change Impacts on the Hydrology and Biogeochemistry of Arctic Rivers, in: Climatic Change and Global Warming of Inland Waters, 1–26, John Wiley & Sons, Ltd, https://doi.org/10.1002/9781118470596.ch1, 2013.
Hopmans, E. C., Weijers, J. W. H., Schefuss, E., Herfort, L., Damste, J. S. S., and Schouten, S.: A novel proxy for terrestrial organic matter in sediments based on branched and isoprenoid tetraether lipids, Earth Planet. Sci. Lett., 224, 107–116, https://doi.org/10.1016/j.epsl.2004.05.012, 2004.
Hugelius, G., Strauss, J., Zubrzycki, S., Harden, J. W., Schuur, E. A. G., Ping, C.-L., Schirrmeister, L., Grosse, G., Michaelson, G. J., Koven, C. D., O'Donnell, J. A., Elberling, B., Mishra, U., Camill, P., Yu, Z., Palmtag, J., and Kuhry, P.: Estimated stocks of circumpolar permafrost carbon with quantified uncertainty ranges and identified data gaps, Biogeosciences, 11, 6573–6593, https://doi.org/10.5194/bg-11-6573-2014, 2014.
IPCC: Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change, Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, 2013.
Karlsson, E. S., Charkin, A., Dudarev, O., Semiletov, I., Vonk, J. E., Sánchez-García, L., Andersson, A., and Gustafsson, Ö.: Carbon isotopes and lipid biomarker investigation of sources, transport and degradation of terrestrial organic matter in the Buor-Khaya Bay, SE Laptev Sea, Biogeosciences, 8, 1865–1879, https://doi.org/10.5194/bg-8-1865-2011, 2011.
Kim, J.-H., Talbot, H. M., Zarzycka, B., Bauersachs, T., and Wagner, T.: Occurrence and abundance of soil-specific bacterial membrane lipid markers in the Têt watershed (southern France): Soil-specific BHPs and branched GDGTs, Geochemistry, Geophysics, Geosystems, 12, Q02008, https://doi.org/10.1029/2010GC003364, 2011.
Knoblauch, C., Beer, C., Sosnin, A., Wagner, D., and Pfeiffer, E.-M.: Predicting long-term carbon mineralization and trace gas production from thawing permafrost of Northeast Siberia, Glob. Change Biol., 19, 1160–1172, https://doi.org/10.1111/gcb.12116, 2013.
Kotlyakov, V. and Khromova, T.: Maps of Permafrost and Ground Ice, Version 1, in: Land Resources of Russia, Laxenburg, Austria: International Institute for Applied Systems Analysis and the Russian Academy of Science, CD-ROM, Distributed by the National Snow and Ice Data Center, Boulder, 2002.
Lantuit, H., Atkinson, D., Overduin, P. P., Grigoriev, M., Rachold, V., Grosse, G., and Hubberten, H.-W.: Coastal erosion dynamics on the permafrost-dominated Bykovsky Peninsula, north Siberia, 1951–2006, 2011, https://doi.org/10.3402/polar.v30i0.7341, 2011.
Lantuit, H., Overduin, P. P., Couture, N., Wetterich, S., Aré, F., Atkinson, D., Brown, J., Cherkashov, G., Drozdov, D., Forbes, D. L., Graves-Gaylord, A., Grigoriev, M., Hubberten, H.-W., Jordan, J., Jorgenson, T., Ødegård, R. S., Ogorodov, S., Pollard, W. H., Rachold, V., Sedenko, S., Solomon, S., Steenhuisen, F., Streletskaya, I., and Vasiliev, A.: The Arctic Coastal Dynamics Database: A New Classification Scheme and Statistics on Arctic Permafrost Coastlines, Estuar. Coasts, 35, 383–400, https://doi.org/10.1007/s12237-010-9362-6, 2012.
Lantuit, H., Overduin, P. P., and Wetterich, S.: Recent Progress Regarding Permafrost Coasts, Permafrost and Periglacial Processes, 24, 120–130, https://doi.org/10.1002/ppp.1777, 2013.
Lupascu, M., Wadham, J. L., Hornibrook, E. R. C., and Pancost, R. D.: Methanogen Biomarkers in the Discontinuous Permafrost Zone of Stordalen, Sweden, Permafrost and Periglacial Processes, 25, 221–232, https://doi.org/10.1002/ppp.1823, 2014.
Mann, P. J., Eglinton, T. I., McIntyre, C. P., Zimov, N., Davydova, A., Vonk, J. E., Holmes, R. M., and Spencer, R. G. M.: Utilization of ancient permafrost carbon in headwaters of Arctic fluvial networks, Nature Communications, 6, 7856, https://doi.org/10.1038/ncomms8856, 2015.
Meyers, P. A.: Organic geochemical proxies of paleoceanographic, paleolimnologic, and paleoclimatic processes, Organic Geochem., 27, 213–250, https://doi.org/10.1016/S0146-6380(97)00049-1, 1997.
Mikutta, R., Mikutta, C., Kalbitz, K., Scheel, T., Kaiser, K., and Jahn, R.: Biodegradation of forest floor organic matter bound to minerals via different binding mechanisms, Geochim. Cosmochim. Acta, 71, 2569–2590, https://doi.org/10.1016/j.gca.2007.03.002, 2007.
Mikutta, R., Schaumann, G. E., Gildemeister, D., Bonneville, S., Kramer, M. G., Chorover, J., Chadwick, O. A., and Guggenberger, G.: Biogeochemistry of mineral-organic associations across a long-term mineralogical soil gradient (0.3–4100 kyr), Hawaiian Islands, Geochim. Cosmochim. Acta, 73, 2034–2060, https://doi.org/10.1016/j.gca.2008.12.028, 2009.
Opsahl, S., Benner, R., and Amon, R. M. W.: Major flux of terrigenous dissolved organic matter through the Arctic Ocean, Limnol. Oceanogr., 44, 2017–2023, https://doi.org/10.4319/lo.1999.44.8.2017, 1999.
Peterse, F., Vonk, J. E., Holmes, R. M., Giosan, L., Zimov, N., and Eglinton, T. I.: Branched glycerol dialkyl glycerol tetraethers in Arctic lake sediments: Sources and implications for paleothermometry at high latitudes, J. Geophys. Res.-Biogeosci., 119, 1738–1754, https://doi.org/10.1002/2014JG002639, 2014.
Peterson, B. J., Holmes, R. M., McClelland, J. W., Vörösmarty, C. J., Lammers, R. B., Shiklomanov, A. I., Shiklomanov, I. A., and Rahmstorf, S.: Increasing River Discharge to the Arctic Ocean, Science, 298, 2171–2173, https://doi.org/10.1126/science.1077445, 2002.
Rawlins, M. A., Steele, M., Holland, M. M., Adam, J. C., Cherry, J. E., Francis, J. A., Groisman, P. Y., Hinzman, L. D., Huntington, T. G., Kane, D. L., Kimball, J. S., Kwok, R., Lammers, R. B., Lee, C. M., Lettenmaier, D. P., McDonald, K. C., Podest, E., Pundsack, J. W., Rudels, B., Serreze, M. C., Shiklomanov, A., Øystein Skagseth, Troy, T. J., Varasmarty, C. J., Wensnahan, M., Wood, E. F., Woodgate, R., Yang, D., Zhang, K., and Zhang, T.: Analysis of the Arctic System for Freshwater Cycle Intensification: Observations and Expectations, J. Climate, 23, 5715–5737, https://doi.org/10.1175/2010JCLI3421.1, 2010.
Rethemeyer, J., Schubotz, F., Talbot, H. M., Cooke, M. P., Hinrichs, K.-U., and Mollenhauer, G.: Distribution of polar membrane lipids in permafrost soils and sediments of a small high Arctic catchment, Organic Geochem., 41, 1130–1145, https://doi.org/10.1016/j.orggeochem.2010.06.004, 2010.
Rohmer, M.: The biosynthesis of the triterpenoids of the hopane series in the Eubacteria: A mine of new enzyme reactions, Pure Appl. Chem., 65, 1293–1298, https://doi.org/10.1351/pac199365061293, 1993.
Romanovsky, V. E., Smith, S. L., and Christiansen, H. H.: Permafrost Thermal State in the Polar Northern Hemisphere during the International Polar Year 2007–2009: a Synthesis, Permafrost and Periglacial Processes, 21, 106–116, https://doi.org/10.1002/ppp.689, 2010.
Rush, D., Sinninghe Damsté, J. S., Poulton, S. W., Thamdrup, B., Garside, A. L., Acuña González, J., Schouten, S., Jetten, M. S. M., and Talbot, H. M.: Anaerobic ammonium-oxidising bacteria: A biological source of the bacteriohopanetetrol stereoisomer in marine sediments, Geochim. Cosmochim. Acta, 140, 50–64, https://doi.org/10.1016/j.gca.2014.05.014, 2014.
Savelieva, N. I., Semiletov, I. P., Vasilevskaya, L. N., and Pugach, S. P.: A climate shift in seasonal values of meteorological and hydrological parameters for Northeastern Asia, Prog. Oceanogr., 47, 279–297, https://doi.org/10.1016/S0079-6611(00)00039-2, 2000.
Schirrmeister, L., Grosse, G., Schnelle, M., Fuchs, M., Krbetschek, M., Ulrich, M., Kunitsky, V., Grigoriev, M., Andreev, A., Kienast, F., Meyer, H., Babiy, O., Klimova, I., Bobrov, A., Wetterich, S., and Schwamborn, G.: Late Quaternary paleoenvironmental records from the western Lena Delta, Arctic Siberia, Palaeogeogr. Palaeoclimatol. Palaeoecol., 299, 175–196, https://doi.org/10.1016/j.palaeo.2010.10.045, 2011.
Schouten, S., Hopmans, E. C., and Sinninghe Damsté, J. S.: The organic geochemistry of glycerol dialkyl glycerol tetraether lipids: A review, Organic Geochem., 54, 19–61, https://doi.org/10.1016/j.orggeochem.2012.09.006, 2013.
Schuur, E. A. G., Vogel, J. G., Crummer, K. G., Lee, H., Sickman, J. O., and Osterkamp, T. E.: The effect of permafrost thaw on old carbon release and net carbon exchange from tundra, Nature, 459, 556–559, https://doi.org/10.1038/nature08031, 2009.
Semiletov, I. and Gustafsson, Ö.: East Siberian Shelf Study Alleviates Scarcity of Observations, Eos, Transactions American Geophysical Union, 90, 145–146, https://doi.org/10.1029/2009EO170001, 2009.
Semiletov, I., Dudarev, O., Luchin, V., Charkin, A., Shin, K.-H., and Tanaka, N.: The East Siberian Sea as a transition zone between Pacific-derived waters and Arctic shelf waters, Geophys. Res. Lett., 32, L10614, https://doi.org/10.1029/2005GL022490, 2005.
Semiletov, I. P.: Aquatic Sources and Sinks of CO2 and CH4 in the Polar Regions, J. Atmos. Sci., 56, 286–306, 1999a.
Semiletov, I. P.: The failure of the coastal permafrost as an important factor in biogeochemistry of the Arctic shelf waters, Transactions of Russia Academy of Sciences [Doklady], 369, 1140–1143, 1999b.
Semiletov, I. P., Savelieva, N. I., Weller, G. E., Pipko, I. I., Pugach, S. P., Gukov, A. Y., and Vasilevskaya, L. N.: The Dispersion of Siberian River Flows into Coastal Waters: Meteorological, Hydrological and Hydrochemical Aspects, in: The Freshwater Budget of the Arctic Ocean, edited by: Lewis, E. L., Jones, E. P., Lemke, P., Prowse, T. D., and Wadhams, P., 323–366, Springer Netherlands, Dordrecht, https://doi.org/10.1007/978-94-011-4132-1_15, 2000.
Semiletov, I. P., Shakhova, N. E., Pipko, I. I., Pugach, S. P., Charkin, A. N., Dudarev, O. V., Kosmach, D. A., and Nishino, S.: Space-time dynamics of carbon and environmental parameters related to carbon dioxide emissions in the Buor-Khaya Bay and adjacent part of the Laptev Sea, Biogeosciences, 10, 5977–5996, https://doi.org/10.5194/bg-10-5977-2013, 2013.
Shakhova, N. and Semiletov, I.: Methane release and coastal environment in the East Siberian Arctic shelf, J. Marine Syst., 66, 227–243, https://doi.org/10.1016/j.jmarsys.2006.06.006, 2007.
Shakhova, N., Semiletov, I., Leifer, I., Salyuk, A., Rekant, P., and Kosmach, D.: Geochemical and geophysical evidence of methane release over the East Siberian Arctic Shelf, J. Geophys. Res.-Oceans, 115, C08007, https://doi.org/10.1029/2009JC005602, 2010a.
Shakhova, N., Semiletov, I., Salyuk, A., Yusupov, V., Kosmach, D., and Gustafsson, Ö.: Extensive Methane Venting to the Atmosphere from Sediments of the East Siberian Arctic Shelf, Science, 327, 1246–1250, https://doi.org/10.1126/science.1182221, 2010b.
Shakhova, N., Semiletov, I., Leifer, I., Sergienko, V., Salyuk, A., Kosmach, D., Chernykh, D., Stubbs, C., Nicolsky, D., Tumskoy, V., and Gustafsson, O.: Ebullition and storm-induced methane release from the East Siberian Arctic Shelf, Nature Geosci., 7, 64–70, https://doi.org/10.1038/ngeo2007, 2014.
Shakhova, N., Semiletov, I., Sergienko, V., Lobkovsky, L., Yusupov, V., Salyuk, A., Salomatin, A., Chernykh, D., Kosmach, D., Panteleev, G., Nicolsky, D., Samarkin, V., Joye, S., Charkin, A., Dudarev, O., Meluzov, A., and Gustafsson, O.: The East Siberian Arctic Shelf: towards further assessment of permafrost-related methane fluxes and role of sea ice, Philos. T. Roy. Soc. A, 373, 20140451, https://doi.org/10.1098/rsta.2014.0451, 2015.
Shakhova, N. E., Sergienko, V. I., and Semiletov, I. P.: The contribution of the East Siberian shelf to the modern methane cycle, Herald of the Russian Academy of Sciences, 79, 237–246, https://doi.org/10.1134/S101933160903006X, 2009.
Sinninghe Damsté, J. S., Rijpstra, W. I. C., Hopmans, E. C., Jung, M.-Y., Kim, J.-G., Rhee, S.-K., Stieglmeier, M., and Schleper, C.: Intact Polar and Core Glycerol Dibiphytanyl Glycerol Tetraether Lipids of Group I.1a and I.1b Thaumarchaeota in Soil, Appl. Environ. Microbiol., 78, 6866–6874, https://doi.org/10.1128/AEM.01681-12, 2012.
Sparkes, R. B., Dogrul Selver, A., Bischoff, J., Talbot, H. M., Gustafsson, Ö., Semiletov, I. P., Dudarev, O. V., and van Dongen, B. E.: GDGT distributions on the East Siberian Arctic Shelf: implications for organic carbon export, burial and degradation, Biogeosciences, 12, 3753–3768, https://doi.org/10.5194/bg-12-3753-2015, 2015.
Spencer, R. G. M., Mann, P. J., Dittmar, T., Eglinton, T. I., McIntyre, C., Holmes, R. M., Zimov, N., and Stubbins, A.: Detecting the signature of permafrost thaw in Arctic rivers, Geophys. Res. Lett., 42, 2830–2835, https://doi.org/10.1002/2015GL063498, 2015.
Spencer-Jones, C. L., Wagner, T., Dinga, B. J., Schefuß, E., Mann, P. J., Poulsen, J. R., Spencer, R. G. M., Wabakanghanzi, J. N., and Talbot, H. M.: Bacteriohopanepolyols in tropical soils and sediments from the Congo River catchment area, Organic Geochem., 89–90, 1–13, https://doi.org/10.1016/j.orggeochem.2015.09.003, 2015.
Talbot, H. M. and Farrimond, P.: Bacterial populations recorded in diverse sedimentary biohopanoid distributions, Organic Geochem., 38, 1212–1225, https://doi.org/10.1016/j.orggeochem.2007.04.006, 2007.
Talbot, H. M., Squier, A. H., Keely, B. J., and Farrimond, P.: Atmospheric pressure chemical ionisation reversed-phase liquid chromatography/ion trap mass spectrometry of intact bacteriohopanepolyols, Rapid Communications in Mass Spectrometry, 17, 728–737, https://doi.org/10.1002/rcm.974, 2003a.
Talbot, H. M., Summons, R., Jahnke, L., and Farrimond, P.: Characteristic fragmentation of bacteriohopanepolyols during atmospheric pressure chemical ionisation liquid chromatography/ion trap mass spectrometry, Rapid Communications in Mass Spectrometry, 17, 2788–2796, https://doi.org/10.1002/rcm.1265, 2003b.
Talbot, H. M., Watson, D. F., Pearson, E. J., and Farrimond, P.: Diverse biohopanoid compositions of non-marine sediments, Organic Geochem., 34, 1353–1371, https://doi.org/10.1016/S0146-6380(03)00159-1, 2003c.
Talbot, H. M., Coolen, M. J. L., and Damste, J. S. S.: An unusual 17 alpha,21 beta(H)-bacteriohopanetetrol in Holocene sediments from Ace Lake (Antarctica), Organic Geochem., 39, 1029–1032, https://doi.org/10.1016/j.orggeochem.2008.01.008, 2008.
Talbot, H. M., Handley, L., Spencer-Jones, C. L., Dinga, B. J., Schefuß, E., Mann, P. J., Poulsen, J. R., Spencer, R. G. M., Wabakanghanzi, J. N., and Wagner, T.: Variability in aerobic methane oxidation over the past 1.2 Myrs recorded in microbial biomarker signatures from Congo fan sediments, Geochim. Cosmochim. Acta, 133, 387–401, https://doi.org/10.1016/j.gca.2014.02.035, 2014.
Taylor, K. A. and Harvey, H. R.: Bacterial hopanoids as tracers of organic carbon sources and processing across the western Arctic continental shelf, Organic Geochem., 42, 487–497, https://doi.org/10.1016/j.orggeochem.2011.03.012, 2011.
Tesi, T., Semiletov, I., Hugelius, G., Dudarev, O., Kuhry, P., and Gustafsson, Ö.: Composition and fate of terrigenous organic matter along the Arctic land-ocean continuum in East Siberia: Insights from biomarkers and carbon isotopes, Geochim. Cosmochim. Acta, 133, 235–256, https://doi.org/10.1016/j.gca.2014.02.045, 2014.
Tesi, T., Semiletov, I., Dudarev, O., Andersson, A., and Gustafsson, Ö.: Matrix association effects on hydrodynamic sorting and degradation of terrestrial organic matter during cross-shelf transport in the Laptev and East Siberian shelf seas, J. Geophys. Res.-Biogeosci., 121, 731–752, https://doi.org/10.1002/2015JG003067, 2016.
van Dongen, B. E., Semiletov, I., Weijers, J. W. H., and Gustafsson, Ö.: Contrasting lipid biomarker composition of terrestrial organic matter exported from across the Eurasian Arctic by the five great Russian Arctic rivers, Global Biogeochem. Cy., 22, GB1011, https://doi.org/10.1029/2007GB002974, 2008.
van Everdingen, R.: Multi-language glossary of permafrost and related ground-ice terms, International Permafrost Association, 2005.
van Winden, J. F., Talbot, H. M., De Vleeschouwer, F., Reichart, G.-J., and Sinninghe Damsté, J. S.: Variation in methanotroph-related proxies in peat deposits from Misten Bog, Hautes-Fagnes, Belgium, Organic Geochem., 53, 73–79, https://doi.org/10.1016/j.orggeochem.2012.07.001, 2012a.
van Winden, J. F., Talbot, H. M., Kip, N., Reichart, G.-J., Pol, A., McNamara, N. P., Jetten, M. S. M., den Camp, H. J. M. O., and Sinninghe Damsté, J. S.: Bacteriohopanepolyol signatures as markers for methanotrophic bacteria in peat moss, Geochim. Cosmochim. Acta, 77, 52–61, https://doi.org/10.1016/j.gca.2011.10.026, 2012b.
Vonk, J. E., Sanchez-Garcia, L., van Dongen, B. E., Alling, V., Kosmach, D., Charkin, A., Semiletov, I. P., Dudarev, O. V., Shakhova, N., Roos, P., Eglinton, T. I., Andersson, A., and Gustafsson, O.: Activation of old carbon by erosion of coastal and subsea permafrost in Arctic Siberia, Nature, 489, 137–140, https://doi.org/10.1038/nature11392, 2012.
Vonk, J. E., Tank, S. E., Bowden, W. B., Laurion, I., Vincent, W. F., Alekseychik, P., Amyot, M., Billet, M. F., Canário, J., Cory, R. M., Deshpande, B. N., Helbig, M., Jammet, M., Karlsson, J., Larouche, J., MacMillan, G., Rautio, M., Walter Anthony, K. M., and Wickland, K. P.: Reviews and syntheses: Effects of permafrost thaw on Arctic aquatic ecosystems, Biogeosciences, 12, 7129–7167, https://doi.org/10.5194/bg-12-7129-2015, 2015.
Wagner, D., Gattinger, A., Embacher, A., Pfeiffer, E.-M., Schloter, M., and Lipski, A.: Methanogenic activity and biomass in Holocene permafrost deposits of the Lena Delta, Siberian Arctic and its implication for the global methane budget, Glob. Change Biol., 13, 1089–1099, https://doi.org/10.1111/j.1365-2486.2006.01331.x, 2007.
Wagner, T., Kallweit, W., Talbot, H. M., Mollenhauer, G., Boom, A., and Zabel, M.: Microbial biomarkers support organic carbon transport from methane-rich Amazon wetlands to the shelf and deep sea fan during recent and glacial climate conditions, Organic Geochem., 67, 85–98, https://doi.org/10.1016/j.orggeochem.2013.12.003, 2014.
Welander, P. V., Hunter, R. C., Zhang, L., Sessions, A. L., Summons, R. E., and Newman, D. K.: Hopanoids Play a Role in Membrane Integrity and pH Homeostasis in Rhodopseudomonas palustris TIE-1, J. Bacteriol., 191, 6145–6156, https://doi.org/10.1128/JB.00460-09, 2009.
Xu, Y., Cooke, M. P., Talbot, H. M., and Simpson, M. J.: Bacteriohopanepolyol signatures of bacterial populations in Western Canadian soils, Organic Geochem., 40, 79–86, https://doi.org/10.1016/j.orggeochem.2008.09.003, 2009.
Zhang, T., Barry, R. G., Knowles, K., Heginbottom, J. A., and Brown, J.: Statistics and characteristics of permafrost and ground-ice distribution in the Northern Hemisphere, Polar Geography, 31, 47–68, https://doi.org/10.1080/10889370802175895, 2008.
Zhu, C., Talbot, H. M., Wagner, T., Pan, J. M., and Pancost, R. D.: Distribution of hopanoids along a land to sea transect: Implications for microbial ecology and the use of hopanoids in environmental studies, Limnol. Oceanogr., 56, 1850–1865, https://doi.org/10.4319/lo.2011.56.5.1850, 2011.
Short summary
The Arctic contains a large pool of carbon that is vulnerable to warming and can be released by rivers and coastal erosion. We study microbial lipids (BHPs) in permafrost and shelf sediments to trace the source, transport and fate of this carbon. BHPs in permafrost deposits are released to the shelf by rivers and coastal erosion, in contrast to other microbial lipids (GDGTs) that are transported by rivers. Several further analyses are needed to understand the complex East Siberian Shelf system.
The Arctic contains a large pool of carbon that is vulnerable to warming and can be released by...
Special issue
Altmetrics
Final-revised paper
Preprint