Articles | Volume 18, issue 3
https://doi.org/10.5194/bg-18-1149-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-18-1149-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
15 Feb 2021
Research article |
| 15 Feb 2021
| 15 Feb 2021
Alkenone isotopes show evidence of active carbon concentrating mechanisms in coccolithophores as aqueous carbon dioxide concentrations fall below 7 µmol L−1
Marcus P. S. Badger
CORRESPONDING AUTHOR
School of Environment, Earth & Ecosystem Sciences, The Open
University, Milton Keynes, MK7 6AA, UK
Related authors
David J. Wilton, Marcus P. S. Badger, Euripides P. Kantzas, Richard D. Pancost, Paul J. Valdes, and David J. Beerling
Geosci. Model Dev., 12, 1351–1364, https://doi.org/10.5194/gmd-12-1351-2019, https://doi.org/10.5194/gmd-12-1351-2019, 2019
Short summary
Short summary
Methane is an important greenhouse gas naturally produced in wetlands (areas of land inundated with water). Models of the Earth's past climate need estimates of the amounts of methane wetlands produce; and in order to calculate those we need to model wetlands. In this work we develop a method for modelling the fraction of an area of the Earth that is wetland, repeat this over all the Earth's land surface and apply this to a study of the Earth as it was around 50 million years ago.
Marcus P. S. Badger, Thomas B. Chalk, Gavin L. Foster, Paul R. Bown, Samantha J. Gibbs, Philip F. Sexton, Daniela N. Schmidt, Heiko Pälike, Andreas Mackensen, and Richard D. Pancost
Clim. Past, 15, 539–554, https://doi.org/10.5194/cp-15-539-2019, https://doi.org/10.5194/cp-15-539-2019, 2019
Short summary
Short summary
Understanding how atmospheric CO2 has affected the climate of the past is an important way of furthering our understanding of how CO2 may affect our climate in the future. There are several ways of determining CO2 in the past; in this paper, we ground-truth one method (based on preserved organic matter from alga) against the record of CO2 preserved as bubbles in ice cores over a glacial–interglacial cycle. We find that there is a discrepancy between the two.
Paul J. Valdes, Edward Armstrong, Marcus P. S. Badger, Catherine D. Bradshaw, Fran Bragg, Michel Crucifix, Taraka Davies-Barnard, Jonathan J. Day, Alex Farnsworth, Chris Gordon, Peter O. Hopcroft, Alan T. Kennedy, Natalie S. Lord, Dan J. Lunt, Alice Marzocchi, Louise M. Parry, Vicky Pope, William H. G. Roberts, Emma J. Stone, Gregory J. L. Tourte, and Jonny H. T. Williams
Geosci. Model Dev., 10, 3715–3743, https://doi.org/10.5194/gmd-10-3715-2017, https://doi.org/10.5194/gmd-10-3715-2017, 2017
Short summary
Short summary
In this paper we describe the family of climate models used by the BRIDGE research group at the University of Bristol as well as by various other institutions. These models are based on the UK Met Office HadCM3 models and here we describe the various modifications which have been made as well as the key features of a number of configurations in use.
David J. Wilton, Marcus P. S. Badger, Euripides P. Kantzas, Richard D. Pancost, Paul J. Valdes, and David J. Beerling
Geosci. Model Dev., 12, 1351–1364, https://doi.org/10.5194/gmd-12-1351-2019, https://doi.org/10.5194/gmd-12-1351-2019, 2019
Short summary
Short summary
Methane is an important greenhouse gas naturally produced in wetlands (areas of land inundated with water). Models of the Earth's past climate need estimates of the amounts of methane wetlands produce; and in order to calculate those we need to model wetlands. In this work we develop a method for modelling the fraction of an area of the Earth that is wetland, repeat this over all the Earth's land surface and apply this to a study of the Earth as it was around 50 million years ago.
Marcus P. S. Badger, Thomas B. Chalk, Gavin L. Foster, Paul R. Bown, Samantha J. Gibbs, Philip F. Sexton, Daniela N. Schmidt, Heiko Pälike, Andreas Mackensen, and Richard D. Pancost
Clim. Past, 15, 539–554, https://doi.org/10.5194/cp-15-539-2019, https://doi.org/10.5194/cp-15-539-2019, 2019
Short summary
Short summary
Understanding how atmospheric CO2 has affected the climate of the past is an important way of furthering our understanding of how CO2 may affect our climate in the future. There are several ways of determining CO2 in the past; in this paper, we ground-truth one method (based on preserved organic matter from alga) against the record of CO2 preserved as bubbles in ice cores over a glacial–interglacial cycle. We find that there is a discrepancy between the two.
Paul J. Valdes, Edward Armstrong, Marcus P. S. Badger, Catherine D. Bradshaw, Fran Bragg, Michel Crucifix, Taraka Davies-Barnard, Jonathan J. Day, Alex Farnsworth, Chris Gordon, Peter O. Hopcroft, Alan T. Kennedy, Natalie S. Lord, Dan J. Lunt, Alice Marzocchi, Louise M. Parry, Vicky Pope, William H. G. Roberts, Emma J. Stone, Gregory J. L. Tourte, and Jonny H. T. Williams
Geosci. Model Dev., 10, 3715–3743, https://doi.org/10.5194/gmd-10-3715-2017, https://doi.org/10.5194/gmd-10-3715-2017, 2017
Short summary
Short summary
In this paper we describe the family of climate models used by the BRIDGE research group at the University of Bristol as well as by various other institutions. These models are based on the UK Met Office HadCM3 models and here we describe the various modifications which have been made as well as the key features of a number of configurations in use.
Related subject area
Biogeochemistry: Organic Biogeochemistry
Lipid remodeling in phytoplankton exposed to multi-environmental drivers in a mesocosm experiment
Molecular-level carbon traits of fine roots: unveiling adaptation and decomposition under flooded conditions
Environmental controls on the distribution of brGDGTs and brGMGTs across the Seine River basin (NW France): implications for bacterial tetraethers as a proxy for riverine runoff
Ocean liming effects on dissolved organic matter dynamics
Latitudinal distribution of biomarkers across the western Arctic Ocean and the Bering Sea: an approach to assess sympagic and pelagic algal production
Results from a Multi-Laboratory Ocean Metaproteomic Intercomparison: Effects of LC-MS Acquisition and Data Analysis Procedures
Sinking fate and carbon export of zooplankton fecal pellets: insights from time-series sediment trap observations in the northern South China Sea
Elemental Stoichiometry of Particulate Organic Matter across the Atlantic Ocean
Microbial strong organic ligand production is tightly coupled to iron in hydrothermal plumes
Low cobalt inventories in the Amundsen and Ross seas driven by high demand for labile cobalt uptake among native phytoplankton communities
Potential bioavailability of representative pyrogenic organic matter compounds in comparison to natural dissolved organic matter pools
Distributions of bacteriohopanepolyols in lakes and coastal lagoons of the Azores Archipelago
Recently fixed carbon fuels microbial activity several meters below the soil surface
Environmental and hydrologic controls on sediment and organic carbon export from a subalpine catchment: insights from a time series
Climate and geology overwrite land use effects on soil organic nitrogen cycling on a continental scale
Reviews and syntheses: Use and misuse of peak intensities from high resolution mass spectrometry in organic matter studies: opportunities for robust usage
Compositions of dissolved organic matter in the ice-covered waters above the Aurora hydrothermal vent system, Gakkel Ridge, Arctic Ocean
Organic matter characteristics of a rapidly eroding permafrost cliff in NE Siberia (Lena Delta, Laptev Sea region)
Microbial labilization and diversification of pyrogenic dissolved organic matter
Bacterial and eukaryotic intact polar lipids point to in situ production as a key source of labile organic matter in hadal surface sediment of the Atacama Trench
What can we learn from amino acids about oceanic organic matter cycling and degradation?
Bacteriohopanetetrol-x: constraining its application as a lipid biomarker for marine anammox using the water column oxygen gradient of the Benguela upwelling system
Active and passive fluxes of carbon, nitrogen, and phosphorus in the northern South China Sea
Cyanobacteria net community production in the Baltic Sea as inferred from profiling pCO2 measurements
Reviews and syntheses: Heterotrophic fixation of inorganic carbon – significant but invisible flux in environmental carbon cycling
Revised fractional abundances and warm-season temperatures substantially improve brGDGT calibrations in lake sediments
Archaeal intact polar lipids in polar waters: a comparison between the Amundsen and Scotia seas
Reproducible determination of dissolved organic matter photosensitivity
Technical note: Uncovering the influence of methodological variations on the extractability of iron-bound organic carbon
Anthropocene climate warming enhances autochthonous carbon cycling in an upland Arctic lake, Disko Island, West Greenland
Novel hydrocarbon-utilizing soil mycobacteria synthesize unique mycocerosic acids at a Sicilian everlasting fire
Seasonal variability and sources of in situ brGDGT production in a permanently stratified African crater lake
Sediment release of dissolved organic matter to the oxygen minimum zone off Peru
Better molecular preservation of organic matter in an oxic than in a sulfidic depositional environment: evidence from Thalassiphora pelagica (Dinoflagellata, Eocene) cysts
Assessing branched tetraether lipids as tracers of soil organic carbon transport through the Carminowe Creek catchment (southwest England)
The nonconservative distribution pattern of organic matter in the Rajang, a tropical river with peatland in its estuary
Predominance of hexamethylated 6-methyl branched glycerol dialkyl glycerol tetraethers in the Mariana Trench: source and environmental implication
High-pH and anoxic conditions during soil organic matter extraction increases its electron-exchange capacity and ability to stimulate microbial Fe(III) reduction by electron shuttling
Sterol preservation in hypersaline microbial mats
Structural elucidation and environmental distributions of butanetriol and pentanetriol dialkyl glycerol tetraethers (BDGTs and PDGTs)
Distribution and degradation of terrestrial organic matter in the sediments of peat-draining rivers, Sarawak, Malaysian Borneo
Validation of carbon isotope fractionation in algal lipids as a pCO2 proxy using a natural CO2 seep (Shikine Island, Japan)
Composition and cycling of dissolved organic matter from tropical peatlands of coastal Sarawak, Borneo, revealed by fluorescence spectroscopy and parallel factor analysis
Latitudinal variations in δ30Si and δ15N signatures along the Peruvian shelf: quantifying the effects of nutrient utilization versus denitrification over the past 600 years
Diapycnal dissolved organic matter supply into the upper Peruvian oxycline
Composition and vertical flux of particulate organic matter to the oxygen minimum zone of the central Baltic Sea: impact of a sporadic North Sea inflow
Main drivers of transparent exopolymer particle distribution across the surface Atlantic Ocean
Biochemical and structural controls on the decomposition dynamics of boreal upland forest moss tissues
Spatiotemporal transformation of dissolved organic matter along an alpine stream flow path on the Qinghai–Tibet Plateau: importance of source and permafrost degradation
A quest for the biological sources of long chain alkyl diols in the western tropical North Atlantic Ocean
Sebastian I. Cantarero, Edgart Flores, Harry Allbrook, Paulina Aguayo, Cristian A. Vargas, John E. Tamanaha, J. Bentley C. Scholz, Lennart T. Bach, Carolin R. Löscher, Ulf Riebesell, Balaji Rajagopalan, Nadia Dildar, and Julio Sepúlveda
Biogeosciences, 21, 3927–3958, https://doi.org/10.5194/bg-21-3927-2024, https://doi.org/10.5194/bg-21-3927-2024, 2024
Short summary
Short summary
Our study explores lipid remodeling in response to environmental stress, specifically how cell membrane chemistry changes. We focus on intact polar lipids in a phytoplankton community exposed to diverse stressors in a mesocosm experiment. The observed remodeling indicates acyl chain recycling for energy storage in intact polar lipids during stress, reallocating resources based on varying growth conditions. This understanding is essential to grasp the system's impact on cellular pools.
Mengke Wang, Peng Zhang, Huishan Li, Guisen Deng, Deliang Kong, Sifang Kong, and Junjian Wang
Biogeosciences, 21, 2691–2704, https://doi.org/10.5194/bg-21-2691-2024, https://doi.org/10.5194/bg-21-2691-2024, 2024
Short summary
Short summary
We developed and applied complementary analyses to characterize molecular-level carbon traits for water-grown and soil-grown fine roots. The adaptive strategy of developing more labile carbon in water-grown roots accelerated root decomposition and counteracted the decelerated effects of anoxia on decomposition, highlighting an indirect effect of environmental change on belowground carbon cycling.
Zhe-Xuan Zhang, Edith Parlanti, Christelle Anquetil, Jérôme Morelle, Anniet M. Laverman, Alexandre Thibault, Elisa Bou, and Arnaud Huguet
Biogeosciences, 21, 2227–2252, https://doi.org/10.5194/bg-21-2227-2024, https://doi.org/10.5194/bg-21-2227-2024, 2024
Short summary
Short summary
Bacterial tetraethers have important implications for palaeoclimate reconstruction. However, fundamental understanding of how these lipids are transformed from land to sea and which environmental factors influence their distributions is lacking. Here, we investigate the sources of brGDGTs and brGMGTs and the factors controlling their distributions in a large dataset (n=237). We propose a novel proxy (RIX) to trace riverine runoff, which is applicable in modern systems and in paleorecord.
Chiara Santinelli, Silvia Valsecchi, Simona Retelletti Brogi, Giancarlo Bachi, Giovanni Checcucci, Mirco Guerrazzi, Elisa Camatti, Stefano Caserini, Arianna Azzellino, and Daniela Basso
EGUsphere, https://doi.org/10.5194/egusphere-2024-625, https://doi.org/10.5194/egusphere-2024-625, 2024
Short summary
Short summary
To the best of our knowledge, there is no study investigating the impact of ocean liming on dissolved organic matter (DOM) dynamics. Given the central role played by DOM in the microbial loop, a change in its concentration and/or quality has a cascading effect the entire marine ecosystem. Our data clearly show that the addition of hydrated lime cause a reduction in DOM concentration and a change in its quality. The observed effects, detectable at pH 9, becomes significant at pH 10.
Youcheng Bai, Marie-Alexandrine Sicre, Jian Ren, Vincent Klein, Haiyan Jin, and Jianfang Chen
Biogeosciences, 21, 689–709, https://doi.org/10.5194/bg-21-689-2024, https://doi.org/10.5194/bg-21-689-2024, 2024
Short summary
Short summary
Algal biomarkers were used to assess sea ice and pelagic algal production across the western Arctic Ocean with changing sea-ice conditions. They show three distinct areas along with a marked latitudinal gradient of sea ice over pelagic algal production in surface sediments that are reflected by the H-Print index. Our data also show that efficient grazing consumption accounted for the dramatic decrease of diatom-derived biomarkers in sediments compared to that of particulate matter.
Mak A. Saito, Jaclyn K. Saunders, Matthew R. McIlvin, Erin M. Bertrand, John A. Breier, Margaret Mars Brisbin, Sophie M. Colston, Jaimee R. Compton, Tim J. Griffin, W. Judson Hervey, Robert L. Hettich, Pratik D. Jagtap, Michael Janech, Rod Johnson, Rick Keil, Hugo Kleikamp, Dagmar Leary, Lennart Martens, J. Scott P. McCain, Eli Moore, Subina Mehta, Dawn M. Moran, Jaqui Neibauer, Benjamin A. Neely, Michael V. Jakuba, Jim Johnson, Megan Duffy, Gerhard J. Herndl, Richard Giannone, Ryan Mueller, Brook L. Nunn, Martin Pabst, Samantha Peters, Andrew Rajczewski, Elden Rowland, Brian Searle, Tim Van Den Bossche, Gary J. Vora, Jacob R. Waldbauer, Haiyan Zheng, and Zihao Zhao
EGUsphere, https://doi.org/10.5194/egusphere-2023-3148, https://doi.org/10.5194/egusphere-2023-3148, 2024
Short summary
Short summary
The ability to assess the functional capabilities of microbes in the environment is of increasing interest. Metaproteomics, the ability to measure proteins across microbial populations, has been increasing in capability and popularity in recent years. Here, an international team of scientists conducted an intercomparison study using samples collected from the North Atlantic Ocean and observed consistency in the peptides and proteins identified, their functions, and taxonomic origins.
Hanxiao Wang, Zhifei Liu, Jiaying Li, Baozhi Lin, Yulong Zhao, Xiaodong Zhang, Junyuan Cao, Jingwen Zhang, Hongzhe Song, and Wenzhuo Wang
Biogeosciences, 20, 5109–5123, https://doi.org/10.5194/bg-20-5109-2023, https://doi.org/10.5194/bg-20-5109-2023, 2023
Short summary
Short summary
The sinking of zooplankton fecal pellets is a key process in the marine biological carbon pump. This study presents carbon export of four shapes of fecal pellets from two time-series sediment traps in the South China Sea. The results show that the sinking fate of fecal pellets is regulated by marine primary productivity, deep-dwelling zooplankton community, and deep-sea currents in the tropical marginal sea, thus providing a new perspective for exploring the carbon cycle in the world ocean.
Adam James Fagan, Tatsuro Tanioka, Alyse Larkin, Jenna Alyson Lee, Nathan Garcia, and Adam Camillo Martiny
EGUsphere, https://doi.org/10.22541/essoar.168394764.42259309/v1, https://doi.org/10.22541/essoar.168394764.42259309/v1, 2023
Short summary
Short summary
Climate change is anticipated to influence the biological pump by altering phytoplankton nutrient distribution. In our research, we collected measurements of particulate matter concentrations during two oceanographic field studies. We observed systematic variations in organic matter concentrations and ratios across the Atlantic Ocean. From statistical modeling, we determined that these variations are associated with differences in the availability of essential nutrients for phytoplankton growth.
Colleen L. Hoffman, Patrick J. Monreal, Justine B. Albers, Alastair J. M. Lough, Alyson E. Santoro, Travis Mellett, Kristen N. Buck, Alessandro Tagliabue, Maeve C. Lohan, Joseph A. Resing, and Randelle M. Bundy
EGUsphere, https://doi.org/10.1101/2023.01.05.522639, https://doi.org/10.1101/2023.01.05.522639, 2023
Short summary
Short summary
Hydrothermally-derived iron can be transported thousands of kilometers away from deep-sea vents, representing a significant flux of vital micronutrients to the ocean. However, the mechanisms that support the stabilization and transport of dissolved iron remain elusive. Using electrochemical methods, advanced mass spectrometry techniques, and genomic tools we demonstrate that strong microbially-produced ligands appear to exert an important control on plume iron biogeochemistry and dissemination.
Rebecca J. Chmiel, Riss M. Kell, Deepa Rao, Dawn M. Moran, Giacomo R. DiTullio, and Mak A. Saito
Biogeosciences, 20, 3997–4027, https://doi.org/10.5194/bg-20-3997-2023, https://doi.org/10.5194/bg-20-3997-2023, 2023
Short summary
Short summary
Cobalt is an important micronutrient for plankton, yet it is often scarce throughout the oceans. A 2017/2018 expedition to coastal Antarctica, including regions of the Amundsen Sea and the Ross Sea, discovered lower concentrations of cobalt compared to two past expeditions in 2005 and 2006, particularly for the type of cobalt preferred as a nutrient by phytoplankton. This loss may be due to changing inputs of other nutrients, causing higher uptake of cobalt by plankton over the last decade.
Emily B. Graham, Hyun-Seob Song, Samantha Grieger, Vanessa A. Garayburu-Caruso, James C. Stegen, Kevin D. Bladon, and Allison N. Myers-Pigg
Biogeosciences, 20, 3449–3457, https://doi.org/10.5194/bg-20-3449-2023, https://doi.org/10.5194/bg-20-3449-2023, 2023
Short summary
Short summary
Intensifying wildfires are increasing pyrogenic organic matter (PyOM) production and its impact on water quality. Recent work indicates that PyOM may have a greater impact on aquatic biogeochemistry than previously assumed, driven by higher bioavailability. We provide a full assessment of the potential bioavailability of PyOM across its chemical spectrum. We indicate that PyOM can be actively transformed within the river corridor and, therefore, may be a growing source of riverine C emissions.
Nora Richter, Ellen C. Hopmans, Danica Mitrović, Pedro M. Raposeiro, Vítor Gonçalves, Ana C. Costa, Linda A. Amaral-Zettler, Laura Villanueva, and Darci Rush
Biogeosciences, 20, 2065–2098, https://doi.org/10.5194/bg-20-2065-2023, https://doi.org/10.5194/bg-20-2065-2023, 2023
Short summary
Short summary
Bacteriohopanepolyols (BHPs) are a diverse class of lipids produced by bacteria across a wide range of environments. This study characterizes the diversity of BHPs in lakes and coastal lagoons in the Azores Archipelago, as well as a co-culture enriched for methanotrophs. We highlight the potential of BHPs as taxonomic markers for bacteria associated with certain ecological niches, which can be preserved in sedimentary records.
Andrea Scheibe, Carlos A. Sierra, and Marie Spohn
Biogeosciences, 20, 827–838, https://doi.org/10.5194/bg-20-827-2023, https://doi.org/10.5194/bg-20-827-2023, 2023
Short summary
Short summary
We explored carbon cycling in soils in three climate zones in Chile down to a depth of 6 m, using carbon isotopes. Our results show that microbial activity several meters below the soil surface is mostly fueled by recently fixed carbon and that strong decomposition of soil organic matter only occurs in the upper decimeters of the soils. The study shows that different layers of the critical zone are tightly connected and that processes in the deep soil depend on recently fixed carbon.
Melissa Sophia Schwab, Hannah Gies, Chantal Valérie Freymond, Maarten Lupker, Negar Haghipour, and Timothy Ian Eglinton
Biogeosciences, 19, 5591–5616, https://doi.org/10.5194/bg-19-5591-2022, https://doi.org/10.5194/bg-19-5591-2022, 2022
Short summary
Short summary
The majority of river studies focus on headwater or floodplain systems, while often neglecting intermediate river segments. Our study on the subalpine Sihl River bridges the gap between streams and lowlands and demonstrates that moderately steep river segments are areas of significant instream alterations, modulating the export of organic carbon over short distances.
Lisa Noll, Shasha Zhang, Qing Zheng, Yuntao Hu, Florian Hofhansl, and Wolfgang Wanek
Biogeosciences, 19, 5419–5433, https://doi.org/10.5194/bg-19-5419-2022, https://doi.org/10.5194/bg-19-5419-2022, 2022
Short summary
Short summary
Cleavage of proteins to smaller nitrogen compounds allows microorganisms and plants to exploit the largest nitrogen reservoir in soils and is considered the bottleneck in soil organic nitrogen cycling. Results from soils covering a European transect show that protein turnover is constrained by soil geochemistry, shifts in climate and associated alterations in soil weathering and should be considered as a driver of soil nitrogen availability with repercussions on carbon cycle processes.
William Kew, Allison Myers-Pigg, Christine Chang, Sean Colby, Josie Eder, Malak Tfaily, Jeffrey Hawkes, Rosalie Chu, and James Stegen
EGUsphere, https://doi.org/10.5194/egusphere-2022-1105, https://doi.org/10.5194/egusphere-2022-1105, 2022
Short summary
Short summary
Natural organic matter (OM) chemistry is often studied with mass spectrometry, but poor use of these data can lead to incorrect outcomes. We review causes of the problems, study them experimentally, and develop a model to guide the use of OM data. We show that the large amount of information from mass spectrometry can overcome technical issues underlying incorrect inferences. The model can guide proper use of mass spectrometry to study OM chemistry, thereby avoiding spurious inferences.
Muhammed Fatih Sert, Helge Niemann, Eoghan P. Reeves, Mats A. Granskog, Kevin P. Hand, Timo Kekäläinen, Janne Jänis, Pamela E. Rossel, Bénédicte Ferré, Anna Silyakova, and Friederike Gründger
Biogeosciences, 19, 2101–2120, https://doi.org/10.5194/bg-19-2101-2022, https://doi.org/10.5194/bg-19-2101-2022, 2022
Short summary
Short summary
We investigate organic matter composition in the Arctic Ocean water column. We collected seawater samples from sea ice to deep waters at six vertical profiles near an active hydrothermal vent and its plume. In comparison to seawater, we found that the organic matter in waters directly affected by the hydrothermal plume had different chemical composition. We suggest that hydrothermal processes may influence the organic matter distribution in the deep ocean.
Charlotte Haugk, Loeka L. Jongejans, Kai Mangelsdorf, Matthias Fuchs, Olga Ogneva, Juri Palmtag, Gesine Mollenhauer, Paul J. Mann, P. Paul Overduin, Guido Grosse, Tina Sanders, Robyn E. Tuerena, Lutz Schirrmeister, Sebastian Wetterich, Alexander Kizyakov, Cornelia Karger, and Jens Strauss
Biogeosciences, 19, 2079–2094, https://doi.org/10.5194/bg-19-2079-2022, https://doi.org/10.5194/bg-19-2079-2022, 2022
Short summary
Short summary
Buried animal and plant remains (carbon) from the last ice age were freeze-locked in permafrost. At an extremely fast eroding permafrost cliff in the Lena Delta (Siberia), we found this formerly frozen carbon well preserved. Our results show that ongoing degradation releases substantial amounts of this carbon, making it available for future carbon emissions. This mobilisation at the studied cliff and also similarly eroding sites bear the potential to affect rivers and oceans negatively.
Aleksandar I. Goranov, Andrew S. Wozniak, Kyle W. Bostick, Andrew R. Zimmerman, Siddhartha Mitra, and Patrick G. Hatcher
Biogeosciences, 19, 1491–1514, https://doi.org/10.5194/bg-19-1491-2022, https://doi.org/10.5194/bg-19-1491-2022, 2022
Short summary
Short summary
Wildfire-derived molecules are ubiquitous in the aquatic environment, but their biological fate remains understudied. We have evaluated the compositional changes that occur to wildfire-derived molecules after incubation with soil microbes. We observe a significant degradation but also a production of numerous new labile molecules. Our results indicate that wildfire-derived molecules can be broken down and the carbon and nitrogen therein can be incorporated into microbial food webs.
Edgart Flores, Sebastian I. Cantarero, Paula Ruiz-Fernández, Nadia Dildar, Matthias Zabel, Osvaldo Ulloa, and Julio Sepúlveda
Biogeosciences, 19, 1395–1420, https://doi.org/10.5194/bg-19-1395-2022, https://doi.org/10.5194/bg-19-1395-2022, 2022
Short summary
Short summary
In this study, we investigate the chemical diversity and abundance of microbial lipids as markers of organic matter sources in the deepest points of the Atacama Trench sediments and compare them to similar lipid stocks in shallower surface sediments and in the overlying water column. We evaluate possible organic matter provenance and some potential chemical adaptations of the in situ microbial community to the extreme conditions of high hydrostatic pressure in hadal realm.
Birgit Gaye, Niko Lahajnar, Natalie Harms, Sophie Anna Luise Paul, Tim Rixen, and Kay-Christian Emeis
Biogeosciences, 19, 807–830, https://doi.org/10.5194/bg-19-807-2022, https://doi.org/10.5194/bg-19-807-2022, 2022
Short summary
Short summary
Amino acids were analyzed in a large number of samples of particulate and dissolved organic matter from coastal regions and the open ocean. A statistical analysis produced two new biogeochemical indicators. An indicator of sinking particle and sediment degradation (SDI) traces the degradation of organic matter from the surface waters into the sediments. A second indicator shows the residence time of suspended matter in the ocean (RTI).
Zoë R. van Kemenade, Laura Villanueva, Ellen C. Hopmans, Peter Kraal, Harry J. Witte, Jaap S. Sinninghe Damsté, and Darci Rush
Biogeosciences, 19, 201–221, https://doi.org/10.5194/bg-19-201-2022, https://doi.org/10.5194/bg-19-201-2022, 2022
Short summary
Short summary
Anaerobic ammonium oxidation (anammox) is an important nitrogen-removal process in the ocean. We assess the distribution of bacteriohopanetetrol-x (BHT-x), used to trace past anammox, along a redox gradient in the water column of the Benguela upwelling system. BHT-x / BHT ratios of >0.18 correspond to the presence of living anammox bacteria and oxygen levels <50 μmol L−1. This allows for a more robust application of BHT-x to trace past marine anammox and deoxygenation in dynamic marine systems.
Jia-Jang Hung, Ching-Han Tung, Zong-Ying Lin, Yuh-ling Lee Chen, Shao-Hung Peng, Yen-Huei Lin, and Li-Shan Tsai
Biogeosciences, 18, 5141–5162, https://doi.org/10.5194/bg-18-5141-2021, https://doi.org/10.5194/bg-18-5141-2021, 2021
Short summary
Short summary
We report measured active and passive fluxes and their controlling mechanisms in the northern South China Sea (NSCS). The total fluxes were higher than most reports in open oceans, indicating the significance of NSCS in atmospheric CO2 uptake and in storing that CO2 in the ocean’s interior. Winter cooling and extreme events enhanced nutrient availability and elevated fluxes. Global warming may have profound impacts on reducing ocean’s uptake and storage of CO2 in subtropical–tropical oceans.
Jens Daniel Müller, Bernd Schneider, Ulf Gräwe, Peer Fietzek, Marcus Bo Wallin, Anna Rutgersson, Norbert Wasmund, Siegfried Krüger, and Gregor Rehder
Biogeosciences, 18, 4889–4917, https://doi.org/10.5194/bg-18-4889-2021, https://doi.org/10.5194/bg-18-4889-2021, 2021
Short summary
Short summary
Based on profiling pCO2 measurements from a field campaign, we quantify the biomass production of a cyanobacteria bloom in the Baltic Sea, the export of which would foster deep water deoxygenation. We further demonstrate how this biomass production can be accurately reconstructed from long-term surface measurements made on cargo vessels in combination with modelled temperature profiles. This approach enables a better understanding of a severe concern for the Baltic’s good environmental status.
Alexander Braun, Marina Spona-Friedl, Maria Avramov, Martin Elsner, Federico Baltar, Thomas Reinthaler, Gerhard J. Herndl, and Christian Griebler
Biogeosciences, 18, 3689–3700, https://doi.org/10.5194/bg-18-3689-2021, https://doi.org/10.5194/bg-18-3689-2021, 2021
Short summary
Short summary
It is known that CO2 fixation by photoautotrophic organisms is the major sink from the atmosphere. While biologists are aware that CO2 fixation also occurs in heterotrophic organisms, this route of inorganic carbon, and its quantitative role, is hardly recognized in biogeochemistry. We demonstrate that a considerable amount of CO2 is fixed annually through anaplerotic reactions in heterotrophic organisms, and a significant quantity of inorganic carbon is temporally sequestered in biomass.
Jonathan H. Raberg, David J. Harning, Sarah E. Crump, Greg de Wet, Aria Blumm, Sebastian Kopf, Áslaug Geirsdóttir, Gifford H. Miller, and Julio Sepúlveda
Biogeosciences, 18, 3579–3603, https://doi.org/10.5194/bg-18-3579-2021, https://doi.org/10.5194/bg-18-3579-2021, 2021
Short summary
Short summary
BrGDGT lipids are a proxy for temperature in lake sediments, but other parameters like pH can influence them, and seasonality can affect the temperatures they record. We find a warm-season bias at 43 new high-latitude sites. We also present a new method that deconvolves the effects of temperature, pH, and conductivity and generate global calibrations for these variables. Our study provides new paleoclimate tools, insight into brGDGTs at the biochemical level, and a new method for future study.
Charlotte L. Spencer-Jones, Erin L. McClymont, Nicole J. Bale, Ellen C. Hopmans, Stefan Schouten, Juliane Müller, E. Povl Abrahamsen, Claire Allen, Torsten Bickert, Claus-Dieter Hillenbrand, Elaine Mawbey, Victoria Peck, Aleksandra Svalova, and James A. Smith
Biogeosciences, 18, 3485–3504, https://doi.org/10.5194/bg-18-3485-2021, https://doi.org/10.5194/bg-18-3485-2021, 2021
Short summary
Short summary
Long-term ocean temperature records are needed to fully understand the impact of West Antarctic Ice Sheet collapse. Glycerol dialkyl glycerol tetraethers (GDGTs) are powerful tools for reconstructing ocean temperature but can be difficult to apply to the Southern Ocean. Our results show active GDGT synthesis in relatively warm depths of the ocean. This research improves the application of GDGT palaeoceanographic proxies in the Southern Ocean.
Alec W. Armstrong, Leanne Powers, and Michael Gonsior
Biogeosciences, 18, 3367–3390, https://doi.org/10.5194/bg-18-3367-2021, https://doi.org/10.5194/bg-18-3367-2021, 2021
Short summary
Short summary
Living things decay into organic matter, which can dissolve into water (like tea brewing). Tea receives its color by absorbing light. Similarly, this material absorbs light, which can then cause chemical reactions that change it. By measuring changes in these optical properties, we found that materials from some places are more sensitive to light than others. Comparing sensitivity to light helps us understand where these materials come from and what happens as they move through water.
Ben J. Fisher, Johan C. Faust, Oliver W. Moore, Caroline L. Peacock, and Christian März
Biogeosciences, 18, 3409–3419, https://doi.org/10.5194/bg-18-3409-2021, https://doi.org/10.5194/bg-18-3409-2021, 2021
Short summary
Short summary
Organic carbon can be protected from microbial degradation in marine sediments through association with iron minerals on 1000-year timescales. Despite the importance of this carbon sink, our spatial and temporal understanding of iron-bound organic carbon interactions globally is poor. Here we show that caution must be applied when comparing quantification of iron-bound organic carbon extracted by different methods as the extraction strength and method specificity can be highly variable.
Mark A. Stevenson, Suzanne McGowan, Emma J. Pearson, George E. A. Swann, Melanie J. Leng, Vivienne J. Jones, Joseph J. Bailey, Xianyu Huang, and Erika Whiteford
Biogeosciences, 18, 2465–2485, https://doi.org/10.5194/bg-18-2465-2021, https://doi.org/10.5194/bg-18-2465-2021, 2021
Short summary
Short summary
We link detailed stable isotope and biomarker analyses from the catchments of three Arctic upland lakes on Disko Island (West Greenland) to a recent dated sediment core to understand how carbon cycling has changed over the past ~500 years. We find that the carbon deposited in sediments in these upland lakes is predominately sourced from in-lake production due to the catchment's limited terrestrial vegetation and elevation and that recent increases in algal production link with climate change.
Nadine T. Smit, Laura Villanueva, Darci Rush, Fausto Grassa, Caitlyn R. Witkowski, Mira Holzheimer, Adriaan J. Minnaard, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 18, 1463–1479, https://doi.org/10.5194/bg-18-1463-2021, https://doi.org/10.5194/bg-18-1463-2021, 2021
Short summary
Short summary
Soils from an everlasting fire (gas seep) in Sicily, Italy, reveal high relative abundances of novel uncultivated mycobacteria and unique 13C-depleted mycocerosic acids (multi-methyl branched fatty acids) close to the main gas seep. Our results imply that mycocerosic acids in combination with their depleted δ13C values offer a new biomarker tool to study the role of soil mycobacteria as hydrocarbon consumers in the modern and past global carbon cycle.
Loes G. J. van Bree, Francien Peterse, Allix J. Baxter, Wannes De Crop, Sigrid van Grinsven, Laura Villanueva, Dirk Verschuren, and Jaap S. Sinninghe Damsté
Biogeosciences, 17, 5443–5463, https://doi.org/10.5194/bg-17-5443-2020, https://doi.org/10.5194/bg-17-5443-2020, 2020
Short summary
Short summary
Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are used as a paleothermometer based on their temperature dependence in global soils, but aquatic production complicates their use in lakes. BrGDGTs in the water column of Lake Chala, East Africa, respond to oxygen conditions and mixing. Changes in their signal can be linked to bacterial community composition rather than membrane adaptation to changing conditions. Their integrated signal in the sediment reflects mean air temperature.
Alexandra N. Loginova, Andrew W. Dale, Frédéric A. C. Le Moigne, Sören Thomsen, Stefan Sommer, David Clemens, Klaus Wallmann, and Anja Engel
Biogeosciences, 17, 4663–4679, https://doi.org/10.5194/bg-17-4663-2020, https://doi.org/10.5194/bg-17-4663-2020, 2020
Short summary
Short summary
We measured dissolved organic carbon (DOC), nitrogen (DON) and matter (DOM) optical properties in pore waters and near-bottom waters of the eastern tropical South Pacific off Peru. The difference between diffusion-driven and net fluxes of DOC and DON and qualitative changes in DOM optical properties suggested active microbial utilisation of the released DOM at the sediment–water interface. Our results suggest that the sediment release of DOM contributes to microbial processes in the area.
Gerard J. M. Versteegh, Alexander J. P. Houben, and Karin A. F. Zonneveld
Biogeosciences, 17, 3545–3561, https://doi.org/10.5194/bg-17-3545-2020, https://doi.org/10.5194/bg-17-3545-2020, 2020
Short summary
Short summary
Anoxic sediments mostly contain much more organic matter than oxic ones, and therefore organic matter in anoxic settings is often considered to be preserved better than in oxic settings. However, through the analysis of the same fossil dinoflagellate cyst species from both oxic and anoxic settings, we show that at a molecular level the preservation in the oxic sediments may be better since in the anoxic setting the cyst macromolecule has been altered by postdepositional modification.
Jingjing Guo, Miriam Glendell, Jeroen Meersmans, Frédérique Kirkels, Jack J. Middelburg, and Francien Peterse
Biogeosciences, 17, 3183–3201, https://doi.org/10.5194/bg-17-3183-2020, https://doi.org/10.5194/bg-17-3183-2020, 2020
Short summary
Short summary
The fluxes of soil organic carbon (OC) transport from land to sea are poorly constrained, mostly due to the lack of a specific tracer for soil OC. Here we evaluate the use of specific molecules derived from soil bacteria as a tracer for soil OC in a small river catchment. We find that the initial soil signal is lost upon entering the aquatic environment. However, the local environmental history of the catchment is reflected by these molecules in the lake sediments that act as their sink.
Zhuo-Yi Zhu, Joanne Oakes, Bradley Eyre, Youyou Hao, Edwin Sien Aun Sia, Shan Jiang, Moritz Müller, and Jing Zhang
Biogeosciences, 17, 2473–2485, https://doi.org/10.5194/bg-17-2473-2020, https://doi.org/10.5194/bg-17-2473-2020, 2020
Short summary
Short summary
Samples were collected in August 2016 in the Rajang River and its estuary, with tropical forest in the river basin and peatland in the estuary. Organic matter composition was influenced by transportation in the river basin, whereas peatland added clear biodegraded parts to the fluvial organic matter, which implies modification of the initial lability and/or starting points in the subsequent degradation and alternation processes after the organic matter enters the sea.
Wenjie Xiao, Yasong Wang, Yongsheng Liu, Xi Zhang, Linlin Shi, and Yunping Xu
Biogeosciences, 17, 2135–2148, https://doi.org/10.5194/bg-17-2135-2020, https://doi.org/10.5194/bg-17-2135-2020, 2020
Short summary
Short summary
The hadal zone (6–11 km depth) is the least explored habitat on Earth. We studied microbial branched glycerol dialkyl glycerol tetraethers (brGDGTs) in the Challenger Deep, Mariana Trench. One unique feature is the strong predominance of 6-methyl brGDGT, which likely reflects an adaption of brGDGT-producing bacteria to alkaline seawater and low temperature. BrGDGTs, with elemental and isotopic data, suggest an autochthonous product for brGDGT. A new approach is proposed for brGDGT sourcing.
Yuge Bai, Edisson Subdiaga, Stefan B. Haderlein, Heike Knicker, and Andreas Kappler
Biogeosciences, 17, 683–698, https://doi.org/10.5194/bg-17-683-2020, https://doi.org/10.5194/bg-17-683-2020, 2020
Short summary
Short summary
Biogeochemical processes of SOM are key for greenhouse gas emission and water quality. We extracted SOM by water or by NaOH–HCl under oxic–anoxic conditions. Chemical and anoxic extractions lead to higher SOM electron exchange capacities, resulting in stimulation of microbial Fe(III) reduction. Therefore, aqueous pH-neutral SOM extracts should be used to reflect environmental SOM redox processes, and artifacts of chemical extractions need to be considered when evaluating SOM redox processes.
Yan Shen, Volker Thiel, Pablo Suarez-Gonzalez, Sebastiaan W. Rampen, and Joachim Reitner
Biogeosciences, 17, 649–666, https://doi.org/10.5194/bg-17-649-2020, https://doi.org/10.5194/bg-17-649-2020, 2020
Short summary
Short summary
Today, sterols are widespread in plants, animals, and fungi but are almost absent in the oldest rocks. Microbial mats, representing the earliest complex ecosystems on Earth, were omnipresent in Precambrian marine environments and may have degraded the sterols at that time. Here we analyze the distribution of sterols through a microbial mat. This provides insight into how variations in biological and nonbiological factors affect the preservation of sterols in modern and ancient microbial mats.
Sarah Coffinet, Travis B. Meador, Lukas Mühlena, Kevin W. Becker, Jan Schröder, Qing-Zeng Zhu, Julius S. Lipp, Verena B. Heuer, Matthew P. Crump, and Kai-Uwe Hinrichs
Biogeosciences, 17, 317–330, https://doi.org/10.5194/bg-17-317-2020, https://doi.org/10.5194/bg-17-317-2020, 2020
Short summary
Short summary
This study deals with two membrane lipids called BDGTs and PDGTs. Membrane lipids are molecules forming the cell envelope of all organisms. Different organisms produce different lipids thus they can be used to detect the presence of specific organisms in the environment. We analyzed the structure of these new lipids and looked for potential producers. We found that they are likely made by microbes emitting methane below the sediment surface and could be used to track these specific microbes.
Ying Wu, Kun Zhu, Jing Zhang, Moritz Müller, Shan Jiang, Aazani Mujahid, Mohd Fakharuddin Muhamad, and Edwin Sien Aun Sia
Biogeosciences, 16, 4517–4533, https://doi.org/10.5194/bg-16-4517-2019, https://doi.org/10.5194/bg-16-4517-2019, 2019
Short summary
Short summary
Our understanding of terrestrial organic matter (TOM) in tropical peat-draining rivers remains limited, especially in Southeast Asia. We explored the characteristics of TOM via bulk parameters and lignin phenols of sediment in Malaysia. This showed that the most important plant source of the organic matter in these rivers is woody angiosperm C3 plants with limited diagenetic alteration. This slower degradation of TOM may be a link to higher total nitrogen content, especially for the small river.
Caitlyn R. Witkowski, Sylvain Agostini, Ben P. Harvey, Marcel T. J. van der Meer, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 16, 4451–4461, https://doi.org/10.5194/bg-16-4451-2019, https://doi.org/10.5194/bg-16-4451-2019, 2019
Short summary
Short summary
Carbon dioxide concentrations (pCO2) in the atmosphere play an integral role in Earth system dynamics, especially climate. Past climates help us understand future ones, but reconstructing pCO2 over the geologic record remains a challenge. This research demonstrates new approaches for exploring past pCO2 via the carbon isotope fractionation in general algal lipids, which we test over a high CO2 gradient from a naturally occurring CO2 seep.
Yongli Zhou, Patrick Martin, and Moritz Müller
Biogeosciences, 16, 2733–2749, https://doi.org/10.5194/bg-16-2733-2019, https://doi.org/10.5194/bg-16-2733-2019, 2019
Short summary
Short summary
We found that peatlands in coastal Sarawak, Borneo, export extremely humified organic matter, which dominates the riverine organic matter pool and conservatively mixes with seawater, while the freshly produced fraction is low and stable in concentration at all salinities. We estimated that terrigenous fractions, which showed high photolability, still account for 20 % of the coastal dissolved organic carbon pool, implying the importance of peat-derived organic matter in the coastal carbon cycle.
Kristin Doering, Claudia Ehlert, Philippe Martinez, Martin Frank, and Ralph Schneider
Biogeosciences, 16, 2163–2180, https://doi.org/10.5194/bg-16-2163-2019, https://doi.org/10.5194/bg-16-2163-2019, 2019
Alexandra N. Loginova, Sören Thomsen, Marcus Dengler, Jan Lüdke, and Anja Engel
Biogeosciences, 16, 2033–2047, https://doi.org/10.5194/bg-16-2033-2019, https://doi.org/10.5194/bg-16-2033-2019, 2019
Short summary
Short summary
High primary production in the Peruvian upwelling system is followed by rapid heterotrophic utilization of organic matter and supports the formation of one of the most intense oxygen minimum zones (OMZs) in the world. Here, we estimated vertical fluxes of oxygen and dissolved organic matter (DOM) from the surface to the OMZ. Our results suggest that DOM remineralization substantially reduces oxygen concentration in the upper water column and controls the shape of the upper oxycline.
Carolina Cisternas-Novoa, Frédéric A. C. Le Moigne, and Anja Engel
Biogeosciences, 16, 927–947, https://doi.org/10.5194/bg-16-927-2019, https://doi.org/10.5194/bg-16-927-2019, 2019
Short summary
Short summary
We investigate the composition and vertical fluxes of POM in two deep basins of the Baltic Sea (GB: Gotland Basin and LD: Landsort Deep). The two basins showed different O2 regimes resulting from the intrusion of oxygen-rich water from the North Sea that ventilated the deep waters in GB, but not in LD.
In GB, O2 intrusions lead to a high abundance of manganese oxides that aggregate with POM, altering its composition and vertical flux and contributing to a higher POC transfer efficiency in GB.
Marina Zamanillo, Eva Ortega-Retuerta, Sdena Nunes, Pablo Rodríguez-Ros, Manuel Dall'Osto, Marta Estrada, Maria Montserrat Sala, and Rafel Simó
Biogeosciences, 16, 733–749, https://doi.org/10.5194/bg-16-733-2019, https://doi.org/10.5194/bg-16-733-2019, 2019
Short summary
Short summary
Many marine microorganisms produce polysaccharide-rich transparent exopolymer particles (TEPs) for rather unknown reasons but with important consequences for the ocean carbon cycle, sea–air gas exchange and formation of organic aerosols. Here we compare surface–ocean distributions of TEPs and physical, chemical and biological variables along a N–S transect in the Atlantic Ocean. Our data suggest that phytoplankton and not bacteria are the main TEP producers, and solar radiation acts as a sink.
Michael Philben, Sara Butler, Sharon A. Billings, Ronald Benner, Kate A. Edwards, and Susan E. Ziegler
Biogeosciences, 15, 6731–6746, https://doi.org/10.5194/bg-15-6731-2018, https://doi.org/10.5194/bg-15-6731-2018, 2018
Short summary
Short summary
We explored the relationship between chemical composition and the temperature sensitivity of moss decomposition using 959-day lab incubations. Mass loss was low despite the predominance of carbohydrates, indicating the persistence of labile C. Scanning electron microscopy revealed little change in the moss cell-wall structure. These results suggest that the moss cell-wall matrix protects labile C from decomposition, contributing to the globally important stocks of moss-derived C.
Yinghui Wang, Robert G. M. Spencer, David C. Podgorski, Anne M. Kellerman, Harunur Rashid, Phoebe Zito, Wenjie Xiao, Dandan Wei, Yuanhe Yang, and Yunping Xu
Biogeosciences, 15, 6637–6648, https://doi.org/10.5194/bg-15-6637-2018, https://doi.org/10.5194/bg-15-6637-2018, 2018
Short summary
Short summary
With global warming, thawing of permafrost releases dissolved organic matter (DOM) into streams. By analyzing DOM along an alpine stream on the Qinghai–Tibet Plateau, we found DOM was mainly from the active layer, but with deepening of the active layer, the contribution of the deep permafrost layer increased, causing a change in the chemical composition of DOM. From the head- to downstream, DOM is undergoing rapid degradation, but some components are persistent and can be transported downstream.
Sergio Balzano, Julie Lattaud, Laura Villanueva, Sebastiaan W. Rampen, Corina P. D. Brussaard, Judith van Bleijswijk, Nicole Bale, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 15, 5951–5968, https://doi.org/10.5194/bg-15-5951-2018, https://doi.org/10.5194/bg-15-5951-2018, 2018
Short summary
Short summary
We tried to identify the microbes which biosynthesize a class of lipids widespread in seawater, the long chain alkyl diols (LCDs). We could not find any microorganism likely involved in the production of LCDs. The amounts of LCDs found are too high to be produced by living organisms and are likely to be part of the refractory organic matter persisting for long periods in the water column.
Cited articles
Ahn, J. and Brook, E. J.: Siple Dome ice reveals two modes of millennial CO2 change during the last ice age, Nat. Commun., 5, 3723, https://doi.org/10.1038/ncomms4723, 2014. a
Anagnostou, E., John, E. H., Edgar, K. M., Foster, G. L., Ridgwell, A., Inglis, G. N., Pancost, R. D., Lunt, D. J., and Pearson, P. N.: Changing atmospheric CO2 concentration was the primary driver of early Cenozoic climate, Nature, 533, 380–384, https://doi.org/10.1038/nature17423, 2016. a
Andersen, N., Müller, P. J., Kirst, G., and Schneider, R. R.: Alkenone δ13C as a Proxy for PastPCO2 in Surface Waters: Results from the Late Quaternary Angola Current, in: Use of Proxies in Paleoceanography, edited by: Fischer, G., and Wefer, G., Springer, Heidelberg, Berlin, Germany, 469–488, https://doi.org/10.1007/978-3-642-58646-0_19, 1999. a, b
Antonov, J. I., Seidov, D., Boyer, T. P., Locarnini, R. A., Mishonov, A. V., Garcia, H. E., Baranova, O. K., Zweng, M. M., and Johnson, D. R.: World Ocean Atlas 2009, Salinity, vol. 2, edited by: Levitus, S., US Government Printing Office, Washington DC, USA, NOAA Atlas NESDIS 69, 184 pp., 2010. a
Badger, M. P. S., Lear, C. H., Pancost, R. D., Foster, G. L., Bailey, T. R., Leng, M. J., and Abels, H. A.: CO2 drawdown following the middle Miocene expansion of the Antarctic Ice Sheet, Paleoceanography, 28, 42–53,
https://doi.org/10.1002/palo.20015, 2013a. a, b, c, d
Badger, M. P. S., Chalk, T. B., Foster, G. L., Bown, P. R., Gibbs, S. J., Sexton, P. F., Schmidt, D. N., Pälike, H., Mackensen, A., and Pancost, R. D.: Insensitivity of alkenone carbon isotopes to atmospheric CO2 at low to moderate CO2 levels, Clim. Past, 15, 539–554, https://doi.org/10.5194/cp-15-539-2019, 2019. a, b, c, d, e, f
Bae, S. W., Lee, K. E., and Kim, K.: Use of carbon isotopic composition of
alkenone as a CO2 proxy in the East Sea/Japan Sea,
Cont. Shelf Res., 107, 24–32, https://doi.org/10.1016/j.csr.2015.07.010, 2015. a, b
Beerling, D. J. and Royer, D. L.: Convergent Cenozoic CO2 history,
Nat. Geosci., 4, 418–420, https://doi.org/10.1038/ngeo1186, 2011. a
Bereiter, B., Lüthi, D., Siegrist, M., Schüpbach, S., Stocker,
T. F., and Fischer, H.: Mode change of millennial CO2 variability during the
last glacial cycle associated with a bipolar marine carbon seesaw,
P. Natl. Acad. Sci. USA, 109, 9755–9760, https://doi.org/10.1073/pnas.1204069109, 2012. a, b
Bereiter, B., Eggleston, S., Schmitt, J., Nehrbass-Ahles, C., Stocker, T. F.,
Fischer, H., Kipfstuhl, S., and Chappellaz, J.: Revision of the EPICA Dome C CO2 record from 800 to 600 kyr before present,
Geophys. Res. Lett., 42, 542–549, https://doi.org/10.1002/2014GL061957, 2015. a, b, c, d, e, f, g, h
Bidigare, R., Fluegge, A., Freeman, K. H., Hanson, K., Hayes, J. M., Hollander, D., Jasper, J. P., King, L. L., Laws, E. A., Milder, J., Millero, F. J., Pancost, R., Popp, B. N., Steinberg, P., and Wakeham, S. G.: Consistent fractionation of 13C in nature and in the laboratory: Growth-rate effects in some haptophyte algae, Global Biochem. Cy., 11, 279–292, 1997. a, b, c, d, e, f, g
Bolton, C. T. and Stoll, H. M.: Late Miocene threshold response of marine
algae to carbon dioxide limitation, Nature, 500, 558–562,
https://doi.org/10.1038/nature12448, 2013. a, b
Bolton, C. T., Stoll, H. M., and Mendez-Vicente, A.: Vital effects in
coccolith calcite: Cenozoic climate-pCO2 drove the diversity of carbon
acquisition strategies in coccolithophores?, Paleoceanography, 27, PA4204, https://doi.org/10.1029/2012PA002339, 2012. a, b, c
Cassar, N., Laws, E. A., and Popp, B. N.: Carbon isotopic fractionation by the marine diatom Phaeodactylum tricornutum under nutrient- and light-limited
growth conditions, Geochim. Cosmochim. Ac., 70, 5323–5335,
https://doi.org/10.1016/j.gca.2006.08.024, 2006. a, b
Conte, M. H., Volkman, J. K., and Eglinton, G.: Lipid biomarkers of the
Haptophyta, in: The Haptophyte algae, edited by: Green, J. and Leadbeater,
B., Oxford University Press, Oxford, UK, 351–377, 1994. a
Farrimond, P., Eglinton, G., and Brassell, S. C.: Alkenones in Cretaceous
black shales, Blake-Bahama Basin, western North Atlantic,
Org. Geochem., 10, 897–903, https://doi.org/10.1016/S0146-6380(86)80027-4, 1986. a
Foster, G. L., Lear, C. H., and Rae, J. W. B.: The evolution of pCO2, ice
volume and climate during the middle Miocene,
Earth Planet. Sc. Lett., 341–344, 243–254, https://doi.org/10.1016/j.epsl.2012.06.007, 2012. a
Foster, G. L., Royer, D. L., and Lunt, D. J.: Future climate forcing
potentially without precedent in the last 420 million years, Nat. Commun., 8, 14845, https://doi.org/10.1038/ncomms14845, 2017. a
Garcia, H. E., Locarnini, R. A., Boyer, T. P., Antonov, J. I., Baranova, O. K., Zweng, M. M., Reagan, J. R., and Johnson, D. R.: World Ocean Atlas 2013, Dissolved Inorganic Nutrients (phosphate, nitrate, silicate), vol. 4, edited by: Levitus, S. and Mishonov, A., Tech. Rep., NOAA Atlas NESDIS 76, 25 pp., Silver Spring, MD, USA, 2014. a, b
Gradstein, F., Ogg, J., Schmitz, M., and Ogg, G.: The Geologic Time Scale
2012, 1st Edn., Elsevier, 1176 pp., https://doi.org/10.1016/C2011-1-08249-8, 2012. a
Kürschner, W. M., Kvacek, Z., and Dilcher, D. L.: The impact of Miocene atmospheric carbon dioxide fluctuations on climate and the evolution,
P. Natl. Acad. Sci. USA, 105, 449–453, 2008. a
Laws, E. A., Bidigare, R. R., and Popp, B. N.: Effect of growth rate and CO2
concentration on carbon isotopic fractionation by the marine diatom
Phaeodactylum tricornutum, Limnol. Oceanogr., 42, 1552–1560,
https://doi.org/10.4319/lo.1997.42.7.1552, 1997. a, b, c, d
Laws, E. A., Popp, B. N., Cassar, N., and Tanimoto, J.: 13C discrimination
patterns in oceanic phytoplankton: likely influence of CO2 concentrating
mechanisms, and implications for palaeoreconstructions,
Funct. Plant Biol., 29, 323–333, https://doi.org/10.1071/Pp01183, 2002. a, b
Locarnini, R. A., Mishonov, A. V., Antonov, J. I., Boyer, T. P., Garcia, H. E., Baranova, O. K., Zweng, M. M., Paver, C. R., Reagan, J. R., Johnson, D. R., Hamilton, M., and Seidov, D.: World Ocean Atlas 2013, Temperature, vol. 1, edited by: Levitus, S. and Mishonov, A., Tech. Rep., NOAA Atlas NESDIS 73, 40 pp., Silver Springs, MD, USA, available at: https://www.nodc.noaa.gov/OC5/woa13/pubwoa13.html (last access: 12 February 2021), 2013. a
MacFarling Meure, C., Etheridge, D., Trudinger, C., Steele, P., Langenfelds,
R., van Ommen, T., Smith, A., and Elkins, J.: Law Dome CO2, CH4 and N2O ice
core records extended to 2000 years BP, Geophys. Res. Lett., 33,
L14810, https://doi.org/10.1029/2006gl026152, 2006. a
Marcott, S. A., Bauska, T. K., Buizert, C., Steig, E. J., Rosen, J. L., Cuffey, K. M., Fudge, T. J., Severinghaus, J. P., Ahn, J., Kalk, M. L., McConnell, J. R., Sowers, T., Taylor, K. C., White, J. W. C., and Brook, E. J.: Centennial-scale changes in the global carbon cycle during the last
deglaciation, Nature, 514, 616–619, 2014. a
Marlowe, I., Brassell, S., Eglinton, G., and Green, J.: Long-chain alkenones
and alkyl alkenoates and the fossil coccolith record of marine sediments,
Chem. Geol., 88, 349–375, https://doi.org/10.1016/0009-2541(90)90098-R, 1990. a
Martínez-Botí, M. A., Foster, G. L., Chalk, T. B., Rohling, E. J., Sexton, P. F., Lunt, D. J., Pancost, R. D., Badger, M. P. S., and Schmidt, D. N.: Plio-Pleistocene climate sensitivity evaluated using high-resolution CO2 records, Nature, 518, 49–54, https://doi.org/10.1038/nature14145, 2015. a, b, c
Monnin, E., Indermuhle, A., Dallenbach, A., Fluckiger, J., Stauffer, B.,
Stocker, T. F., Raynaud, D., and Barnola, J. M.: Atmospheric CO2
concentrations over the last glacial termination, Science, 291, 112–114,
https://doi.org/10.1126/science.291.5501.112, 2001. a
Monnin, E., Steig, E. J., Siegenthaler, U., Kawamura, K., Schwander, J.,
Stauffer, B., Stocker, T. F., Morse, D. L., Barnola, J.-M., Bellier, B.,
Raynaud, D., and Fischer, H.: Evidence for substantial accumulation rate
variability in Antarctica during the Holocene, through synchronization of CO2
in the Taylor Dome, Dome C and DML ice cores, Earth Planet. Sc. Lett., 224, 45–54, https://doi.org/10.1016/j.epsl.2004.05.007, 2004. a
Mook, W. G., Bommerson, J. C., and Staverman, W. H.: Carbon isotope
fractionation between dissolved bicarbonate and gaseous carbon dioxide,
Earth Planet. Sc. Lett., 22, 169–176,
https://doi.org/10.1016/0012-821X(74)90078-8, 1974. a
Pagani, M., Zachos, J. C., Freeman, K. H., Tipple, B., and Bohaty, S.: Marked decline in atmospheric carbon dioxide concentrations during the Paleogene, Science, 309, 600–603, https://doi.org/10.1126/science.1110063, 2005. a
Pagani, M., Liu, Z., La Riviere, J., and Ravelo, A. C.: High Earth-system
climate sensitivity determined from Pliocene carbon dioxide concentrations,
Nat. Geosci., 3, 27–30, https://doi.org/10.1038/ngeo724, 2009. a, b, c, d
Pagani, M., Huber, M., Liu, Z., Bohaty, S. M., Henderiks, J., Sijp, W.,
Krishnan, S., and De Conto, R. M.: The role of carbon dioxide during the
onset of Antarctic glaciation, Science, 334, 1261–1264,
https://doi.org/10.1126/science.1203909, 2011. a
Palmer, M. R., Brummer, G. J., Cooper, M. J., Elderfield, H., Greaves, M. J.,
Reichart, G. J., Schouten, S., and Yu, J. M.: Multi-proxy reconstruction of
surface water pCO2 in the northern Arabian Sea since 29 ka, Earth Planet. Sc. Lett., 295, 49–57, https://doi.org/10.1016/j.epsl.2010.03.023, 2010. a, b, c
Pearson, P. N., Foster, G. L., and Wade, B. S.: Atmospheric carbon dioxide
through the Eocene-Oligocene climate transition, Nature, 461, 1110–1113,
https://doi.org/10.1038/nature08447, 2009. a
Petit, J. R., Jouzel, J., Raynaud, D., Barkov, N. I., Barnola, J.-M., Basile,
I., Bender, M., Chappellaz, J., Davis, M., Delaygue, G., Delmotte, M.,
Kotlyakov, V. M., Legrand, M., Lipenkov, V. Y., Lorius, C., Pepin, K., Ritz,
C., Saltzman, E., and Stievenard, M.: Climate and atmospheric history of the
past 420 000 years from the Vostok ice core, Antarctica, Nature, 399,
429–436, 1999. a
Popp, B., Laws, E. A., Bidigare, R., Dore, J., Hanson, K., and Wakeham, S. G.: Effect of phytoplankton cell geometry on carbon isotopic fractionation, Geochim. Cosmochim. Ac., 62, 67–77, 1998. a
R Core Team: A language and environment for statistical computing, available at: https://www.r-project.org/ (last access: 9 October 2020), 2020. a
R Studio Team: Integrated Development for R, RStudio, PBC, Boston, MA, USA, available at: http://www.rstudio.com/, last access: 18 September 2020. a
Raffi, I., Backman, J., Fornaciari, E., Pälike, H., Rio, D., Lourens, L., and Hilgen, F.: A review of calcareous nannofossil astrobiochronology
encompassing the past 25 million years, Quaternary Sci. Rev., 25,
3113–3137, https://doi.org/10.1016/j.quascirev.2006.07.007, 2006. a
Reinfelder, J. R.: Carbon concentrating mechanisms in eukaryotic marine
phytoplankton, Annu. Rev. Mar. Sci., 3, 291–315,
https://doi.org/10.1146/annurev-marine-120709-142720, 2011. a, b
Riebesell, U., Revill, A. T., Holdsworth, D. G., and Volkman, J. K.: The
effects of varying CO2 concentration on lipid composition and carbon isotope
fractionation in Emiliania huxleyi, Geochim. Cosmochim. Ac., 64,
4179–4192, https://doi.org/10.1016/S0016-7037(00)00474-9, 2000. a
Riebesell, U., Schulz, K. G., Bellerby, R. G., Botros, M., Fritsche, P.,
Meyerhöfer, M., Neill, C., Nondal, G., Oschlies, A., Wohlers, J., and
Zöllner, E.: Enhanced biological carbon consumption in a high CO2
ocean, Nature, 450, 545–548, https://doi.org/10.1038/nature06267, 2007. a, b
Romanek, C. S., Grossman, E. L., and Morse, J. W.: Carbon isotopic
fractionation in synthetic aragonite and calcite: Effects of temperature and
precipitation rate, Geochim. Cosmochim. Ac., 56, 419–430,
https://doi.org/10.1016/0016-7037(92)90142-6, 1992. a
Rost, B., Riebesell, U., Burkhardt, S., and Sültemeyer, D.: Carbon
acquisition of bloom-forming marine phytoplankton, Limnol. Oceanogr., 48, 55–67, https://doi.org/10.4319/lo.2003.48.1.0055, 2003. a, b
Rubino, M., Etheridge, D. M., Trudinger, C. M., Allison, C. E., Battle, M. O., Langenfelds, R. L., Steele, L. P., Curran, M., Bender, M., White, J. W. C., Jenk, T. M., Blunier, T., and Francey, R. J.: A revised 1000 year
atmospheric δ13C-CO2 record from Law Dome and South Pole, Antarctica,
J. Geophys. Res.-Atmos., 118, 8482–8499,
https://doi.org/10.1002/jgrd.50668, 2013. a
Schneider, R., Schmitt, J., Köhler, P., Joos, F., and Fischer, H.: A reconstruction of atmospheric carbon dioxide and its stable carbon isotopic composition from the penultimate glacial maximum to the last glacial inception, Clim. Past, 9, 2507–2523, https://doi.org/10.5194/cp-9-2507-2013, 2013. a
Sosdian, S. M., Greenop, R., Hain, M. P., Foster, G. L., Pearson, P. N., and
Lear, C. H.: Constraining the evolution of Neogene ocean carbonate chemistry
using the boron isotope pH proxy, Earth Planet. Sc. Lett., 498,
362–376, https://doi.org/10.1016/j.epsl.2018.06.017, 2018. a
Stoll, H. M., Guitian, J., Hernandez-Almeida, I., Mejia, L. M., Phelps, S.,
Polissar, P., Rosenthal, Y., Zhang, H., and Ziveri, P.: Upregulation of
phytoplankton carbon concentrating mechanisms during low CO2 glacial periods
and implications for the phytoplankton pCO2 proxy, Quaternary Sci. Rev., 208, 1–20, https://doi.org/10.1016/j.quascirev.2019.01.012, 2019. a, b, c
Super, J. R., Thomas, E., Pagani, M., Huber, M., Brien, C. O., and Hull, P. M.: North Atlantic temperature and pCO2 coupling in the early-middle Miocene, Geology, 46, 519–522, https://doi.org/10.1130/G40228.1, 2018. a, b
Takahashi, T., Sutherland, S. C., Wanninkhof, R., Sweeney, C., Feely, R. A.,
Chipman, D. W., Hales, B., Friederich, G., Chavez, F., Sabine, C., Watson,
A., Bakker, D. C. E., Schuster, U., Metzl, N., Yoshikawa-Inoue, H., Ishii,
M., Midorikawa, T., Nojiri, Y., Körtzinger, A., Steinhoff, T., Hoppema,
M., Olafsson, J., Arnarson, T. S., Tilbrook, B., Johannessen, T., Olsen, A.,
Bellerby, R., Wong, C. S., Delille, B., Bates, N. R., and de Baar, H. J. W.:
Climatological mean and decadal change in surface ocean pCO2, and net
sea–air CO2 flux over the global oceans,
Deep-Sea Res. Pt. II, 56, 554–577, https://doi.org/10.1016/j.dsr2.2008.12.009, 2009. a
Takahashi, T., Sutherland, S. C., Chipman, D. W., Goddard, J., Newberber, T.,
and Sweeney, C.: Climatological Distributions of pH, pCO2, Total CO2,
Alkalinity, and CaCO3 Saturation in the Global Surface Ocean, Carbon Dioxide Information Analysis Center, Oak Ridge National Laboratory, US
Department of Energy, Oak Ridge, Tennessee, ORNL/CDIAC-160, NDP-094, https://doi.org/10.3334/CDIAC/OTG.NDP094, 2014.
a
Tchernov, D., Silverman, J., Luz, B., Reinhold, L., and Kaplan, A.: Massive
light-dependent cycling of inorganic carbon between oxygenic photosynthetic
microorganisms and their surroundings, Photosynth. Res., 77, 95–103,
https://doi.org/10.1023/A:1025869600935, 2003. a
Trimborn, S., Langer, G., and Rost, B.: Effect of varying calcium
concentrations and light intensities on calcification and photosynthesis in
Emiliania huxleyi, Limnol. Oceanogr., 52, 2285–2293,
https://doi.org/10.4319/lo.2007.52.5.2285, 2007. a
Volkman, J. K.: Ecological and environmental factors affecting alkenone
distributions in seawater and sediments,
Geochem. Geophy. Geosy., 1, 1036, https://doi.org/10.1029/2000GC000061, 2000. a
Weiss, R. F.: The solubility of nitrogen, oxygen and argon in water and
seawater, Deep-Sea Res. Pt. I, 17, 721–735, https://doi.org/10.1016/0011-7471(70)90037-9, 1970. a
Weiss, R. F.: Carbon dioxide in water and seawater: the solubility of a
non-ideal gas, Mar. Chem., 2, 203–215, 1974. a
Wessel, P. and Smith, W. H. F.: A global, self-consistent, hierarchical,
high-resolution shoreline database,
J. Geophys. Res.-Sol. Ea., 101, 8741–8743, https://doi.org/10.1029/96JB00104, 1996. a
Wessel, P., Luis, J. F., Uieda, L., Scharroo, R., Wobbe, F., Smith, W. H. F.,
and Tian, D.: The Generic Mapping Tools Version 6, Geochem. Geophy. Geosy., 20, 5556–5564, https://doi.org/10.1029/2019GC008515, 2019. a
Zhang, Y. G., Pagani, M., Liu, Z., Bohaty, S. M., and Deconto, R.: A
40 million year history of atmospheric CO2, Philos. T. Roy. Soc. A, 371, 20130096, https://doi.org/10.1098/rsta.2013.0096, 2013. a, b, c
Zhang, Y. G., Pearson, A., Benthien, A., Dong, L., Huybers, P., Liu, X., and
Pagani, M.: Refining the alkenone-pCO2 method I: Lessons from the Quaternary
glacial cycles, Geochim. Cosmochim. Ac., 260, 177–191,
https://doi.org/10.1016/j.gca.2019.06.032, 2019. a, b, c
Zhang, Y. G., Henderiks, J., and Liu, X.: Refining the alkenone-pCO2 method
II: Towards resolving the physiological parameter “b”, Geochim. Cosmochim. Ac., 281, 118–134, https://doi.org/10.1016/j.gca.2020.05.002, 2020. a, b, c
Zondervan, I., Rost, B., and Riebesell, U.: Effect of CO2 concentration on the
Short summary
Reconstructing ancient atmospheric CO2 is an important aim of palaeoclimate science in order to understand the Earth's climate system. One method, the alkenone proxy based on molecular fossils of coccolithophores, has been recently shown to be ineffective at low-to-moderate CO2 levels. In this paper I show that this is likely due to changes in the biogeochemistry of the coccolithophores when there is low carbon availability, but for much of the Cenozoic the alkenone proxy should have utility.
Reconstructing ancient atmospheric CO2 is an important aim of palaeoclimate science in order to...
Altmetrics
Final-revised paper
Preprint