Research article 17 Jun 2021
Research article | 17 Jun 2021
Revised fractional abundances and warm-season temperatures substantially improve brGDGT calibrations in lake sediments
Jonathan H. Raberg et al.
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Edgart Flores, Sebastian I. Cantarero, Paula Ruiz-Fernández, Nadia Dildar, Matthias Zabel, Osvaldo Ulloa, and Julio Sepúlveda
Biogeosciences, 19, 1395–1420, https://doi.org/10.5194/bg-19-1395-2022, https://doi.org/10.5194/bg-19-1395-2022, 2022
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In this study, we investigate the chemical diversity and abundance of microbial lipids as markers of organic matter sources in the deepest points of the Atacama Trench sediments and compare them to similar lipid stocks in shallower surface sediments and in the overlying water column. We evaluate possible organic matter provenance and some potential chemical adaptations of the in situ microbial community to the extreme conditions of high hydrostatic pressure in hadal realm.
David J. Harning, Brooke Holman, Lineke Woelders, Anne E. Jennings, and Julio Sepúlveda
Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-177, https://doi.org/10.5194/bg-2021-177, 2021
Manuscript not accepted for further review
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In order to better reconstruct the geologic history of the North Water Polynya, we provide modern validations and calibrations of lipid biomarker proxies in Baffin Bay. We find that sterols, rather than HBIs, most accurately capture the current extent of the North Water Polynya and will be a valuable tool to reconstruct its past presence/absence. Our local temperature calibrations for alkenones, GDGTs and OH-GDGTs reduce the uncertainty present in global temperature calibrations.
David J. Harning, Anne E. Jennings, Denizcan Köseoğlu, Simon T. Belt, Áslaug Geirsdóttir, and Julio Sepúlveda
Clim. Past, 17, 379–396, https://doi.org/10.5194/cp-17-379-2021, https://doi.org/10.5194/cp-17-379-2021, 2021
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Today, the waters north of Iceland are characterized by high productivity that supports a diverse food web. However, it is not known how this may change and impact Iceland's economy with future climate change. Therefore, we explored how the local productivity has changed in the past 8000 years through fossil and biogeochemical indicators preserved in Icelandic marine mud. We show that this productivity relies on the mixing of Atlantic and Arctic waters, which migrate north under warming.
Áslaug Geirsdóttir, Gifford H. Miller, John T. Andrews, David J. Harning, Leif S. Anderson, Christopher Florian, Darren J. Larsen, and Thor Thordarson
Clim. Past, 15, 25–40, https://doi.org/10.5194/cp-15-25-2019, https://doi.org/10.5194/cp-15-25-2019, 2019
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Compositing climate proxies in sediment from seven Iceland lakes documents abrupt summer cooling between 4.5 and 4.0 ka, statistically indistinguishable from 4.2 ka. Although the decline in summer insolation was an important factor, a combination of superposed changes in ocean circulation and explosive Icelandic volcanism were likely responsible for the abrupt perturbation recorded by our proxies. Lake and catchment proxies recovered to a colder equilibrium state following the perturbation.
Simon L. Pendleton, Gifford H. Miller, Robert A. Anderson, Sarah E. Crump, Yafang Zhong, Alexandra Jahn, and Áslaug Geirsdottir
Clim. Past, 13, 1527–1537, https://doi.org/10.5194/cp-13-1527-2017, https://doi.org/10.5194/cp-13-1527-2017, 2017
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Recent warming in the high latitudes has prompted the accelerated retreat of ice caps and glaciers, especially in the Canadian Arctic. Here we use the radiocarbon age of preserved plants being exposed by shrinking ice caps that once entombed them. These ages help us to constrain the timing and magnitude of climate change on southern Baffin Island over the past ~ 2000 years. Our results show episodic cooling up until ~ 1900 CE, followed by accelerated warming through present.
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Edgart Flores, Sebastian I. Cantarero, Paula Ruiz-Fernández, Nadia Dildar, Matthias Zabel, Osvaldo Ulloa, and Julio Sepúlveda
Biogeosciences, 19, 1395–1420, https://doi.org/10.5194/bg-19-1395-2022, https://doi.org/10.5194/bg-19-1395-2022, 2022
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Birgit Gaye, Niko Lahajnar, Natalie Harms, Sophie Anna Luise Paul, Tim Rixen, and Kay-Christian Emeis
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Jens Daniel Müller, Bernd Schneider, Ulf Gräwe, Peer Fietzek, Marcus Bo Wallin, Anna Rutgersson, Norbert Wasmund, Siegfried Krüger, and Gregor Rehder
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Alexander Braun, Marina Spona-Friedl, Maria Avramov, Martin Elsner, Federico Baltar, Thomas Reinthaler, Gerhard J. Herndl, and Christian Griebler
Biogeosciences, 18, 3689–3700, https://doi.org/10.5194/bg-18-3689-2021, https://doi.org/10.5194/bg-18-3689-2021, 2021
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Charlotte L. Spencer-Jones, Erin L. McClymont, Nicole J. Bale, Ellen C. Hopmans, Stefan Schouten, Juliane Müller, E. Povl Abrahamsen, Claire Allen, Torsten Bickert, Claus-Dieter Hillenbrand, Elaine Mawbey, Victoria Peck, Aleksandra Svalova, and James A. Smith
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Alec W. Armstrong, Leanne Powers, and Michael Gonsior
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Living things decay into organic matter, which can dissolve into water (like tea brewing). Tea receives its color by absorbing light. Similarly, this material absorbs light, which can then cause chemical reactions that change it. By measuring changes in these optical properties, we found that materials from some places are more sensitive to light than others. Comparing sensitivity to light helps us understand where these materials come from and what happens as they move through water.
Ben J. Fisher, Johan C. Faust, Oliver W. Moore, Caroline L. Peacock, and Christian März
Biogeosciences, 18, 3409–3419, https://doi.org/10.5194/bg-18-3409-2021, https://doi.org/10.5194/bg-18-3409-2021, 2021
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Organic carbon can be protected from microbial degradation in marine sediments through association with iron minerals on 1000-year timescales. Despite the importance of this carbon sink, our spatial and temporal understanding of iron-bound organic carbon interactions globally is poor. Here we show that caution must be applied when comparing quantification of iron-bound organic carbon extracted by different methods as the extraction strength and method specificity can be highly variable.
Aleksandar I. Goranov, Andrew S. Wozniak, Kyle W. Bostick, Andrew R. Zimmerman, Siddhartha Mitra, and Patrick G. Hatcher
Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-23, https://doi.org/10.5194/bg-2021-23, 2021
Revised manuscript accepted for BG
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Wildfire-derived molecules are ubiquitous in the aquatic environment, but their biotic fate remains understudied. We have evaluated the compositional changes that occur to wildfire-derived molecules after incubation with soil microbes. We observe a significant degradation, but also a production of numerous new labile molecules. Our results indicate that wildfire-derived molecules can be reworked and consumed by microbes leading to their incorporation into food webs and the global carbon cycle.
Mark A. Stevenson, Suzanne McGowan, Emma J. Pearson, George E. A. Swann, Melanie J. Leng, Vivienne J. Jones, Joseph J. Bailey, Xianyu Huang, and Erika Whiteford
Biogeosciences, 18, 2465–2485, https://doi.org/10.5194/bg-18-2465-2021, https://doi.org/10.5194/bg-18-2465-2021, 2021
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We link detailed stable isotope and biomarker analyses from the catchments of three Arctic upland lakes on Disko Island (West Greenland) to a recent dated sediment core to understand how carbon cycling has changed over the past ~500 years. We find that the carbon deposited in sediments in these upland lakes is predominately sourced from in-lake production due to the catchment's limited terrestrial vegetation and elevation and that recent increases in algal production link with climate change.
Nadine T. Smit, Laura Villanueva, Darci Rush, Fausto Grassa, Caitlyn R. Witkowski, Mira Holzheimer, Adriaan J. Minnaard, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 18, 1463–1479, https://doi.org/10.5194/bg-18-1463-2021, https://doi.org/10.5194/bg-18-1463-2021, 2021
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Soils from an everlasting fire (gas seep) in Sicily, Italy, reveal high relative abundances of novel uncultivated mycobacteria and unique 13C-depleted mycocerosic acids (multi-methyl branched fatty acids) close to the main gas seep. Our results imply that mycocerosic acids in combination with their depleted δ13C values offer a new biomarker tool to study the role of soil mycobacteria as hydrocarbon consumers in the modern and past global carbon cycle.
Marcus P. S. Badger
Biogeosciences, 18, 1149–1160, https://doi.org/10.5194/bg-18-1149-2021, https://doi.org/10.5194/bg-18-1149-2021, 2021
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Reconstructing ancient atmospheric CO2 is an important aim of palaeoclimate science in order to understand the Earth's climate system. One method, the alkenone proxy based on molecular fossils of coccolithophores, has been recently shown to be ineffective at low-to-moderate CO2 levels. In this paper I show that this is likely due to changes in the biogeochemistry of the coccolithophores when there is low carbon availability, but for much of the Cenozoic the alkenone proxy should have utility.
Loes G. J. van Bree, Francien Peterse, Allix J. Baxter, Wannes De Crop, Sigrid van Grinsven, Laura Villanueva, Dirk Verschuren, and Jaap S. Sinninghe Damsté
Biogeosciences, 17, 5443–5463, https://doi.org/10.5194/bg-17-5443-2020, https://doi.org/10.5194/bg-17-5443-2020, 2020
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Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are used as a paleothermometer based on their temperature dependence in global soils, but aquatic production complicates their use in lakes. BrGDGTs in the water column of Lake Chala, East Africa, respond to oxygen conditions and mixing. Changes in their signal can be linked to bacterial community composition rather than membrane adaptation to changing conditions. Their integrated signal in the sediment reflects mean air temperature.
Alexandra N. Loginova, Andrew W. Dale, Frédéric A. C. Le Moigne, Sören Thomsen, Stefan Sommer, David Clemens, Klaus Wallmann, and Anja Engel
Biogeosciences, 17, 4663–4679, https://doi.org/10.5194/bg-17-4663-2020, https://doi.org/10.5194/bg-17-4663-2020, 2020
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We measured dissolved organic carbon (DOC), nitrogen (DON) and matter (DOM) optical properties in pore waters and near-bottom waters of the eastern tropical South Pacific off Peru. The difference between diffusion-driven and net fluxes of DOC and DON and qualitative changes in DOM optical properties suggested active microbial utilisation of the released DOM at the sediment–water interface. Our results suggest that the sediment release of DOM contributes to microbial processes in the area.
Gerard J. M. Versteegh, Alexander J. P. Houben, and Karin A. F. Zonneveld
Biogeosciences, 17, 3545–3561, https://doi.org/10.5194/bg-17-3545-2020, https://doi.org/10.5194/bg-17-3545-2020, 2020
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Anoxic sediments mostly contain much more organic matter than oxic ones, and therefore organic matter in anoxic settings is often considered to be preserved better than in oxic settings. However, through the analysis of the same fossil dinoflagellate cyst species from both oxic and anoxic settings, we show that at a molecular level the preservation in the oxic sediments may be better since in the anoxic setting the cyst macromolecule has been altered by postdepositional modification.
Jingjing Guo, Miriam Glendell, Jeroen Meersmans, Frédérique Kirkels, Jack J. Middelburg, and Francien Peterse
Biogeosciences, 17, 3183–3201, https://doi.org/10.5194/bg-17-3183-2020, https://doi.org/10.5194/bg-17-3183-2020, 2020
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The fluxes of soil organic carbon (OC) transport from land to sea are poorly constrained, mostly due to the lack of a specific tracer for soil OC. Here we evaluate the use of specific molecules derived from soil bacteria as a tracer for soil OC in a small river catchment. We find that the initial soil signal is lost upon entering the aquatic environment. However, the local environmental history of the catchment is reflected by these molecules in the lake sediments that act as their sink.
Zhuo-Yi Zhu, Joanne Oakes, Bradley Eyre, Youyou Hao, Edwin Sien Aun Sia, Shan Jiang, Moritz Müller, and Jing Zhang
Biogeosciences, 17, 2473–2485, https://doi.org/10.5194/bg-17-2473-2020, https://doi.org/10.5194/bg-17-2473-2020, 2020
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Samples were collected in August 2016 in the Rajang River and its estuary, with tropical forest in the river basin and peatland in the estuary. Organic matter composition was influenced by transportation in the river basin, whereas peatland added clear biodegraded parts to the fluvial organic matter, which implies modification of the initial lability and/or starting points in the subsequent degradation and alternation processes after the organic matter enters the sea.
Wenjie Xiao, Yasong Wang, Yongsheng Liu, Xi Zhang, Linlin Shi, and Yunping Xu
Biogeosciences, 17, 2135–2148, https://doi.org/10.5194/bg-17-2135-2020, https://doi.org/10.5194/bg-17-2135-2020, 2020
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The hadal zone (6–11 km depth) is the least explored habitat on Earth. We studied microbial branched glycerol dialkyl glycerol tetraethers (brGDGTs) in the Challenger Deep, Mariana Trench. One unique feature is the strong predominance of 6-methyl brGDGT, which likely reflects an adaption of brGDGT-producing bacteria to alkaline seawater and low temperature. BrGDGTs, with elemental and isotopic data, suggest an autochthonous product for brGDGT. A new approach is proposed for brGDGT sourcing.
Yuge Bai, Edisson Subdiaga, Stefan B. Haderlein, Heike Knicker, and Andreas Kappler
Biogeosciences, 17, 683–698, https://doi.org/10.5194/bg-17-683-2020, https://doi.org/10.5194/bg-17-683-2020, 2020
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Biogeochemical processes of SOM are key for greenhouse gas emission and water quality. We extracted SOM by water or by NaOH–HCl under oxic–anoxic conditions. Chemical and anoxic extractions lead to higher SOM electron exchange capacities, resulting in stimulation of microbial Fe(III) reduction. Therefore, aqueous pH-neutral SOM extracts should be used to reflect environmental SOM redox processes, and artifacts of chemical extractions need to be considered when evaluating SOM redox processes.
Yan Shen, Volker Thiel, Pablo Suarez-Gonzalez, Sebastiaan W. Rampen, and Joachim Reitner
Biogeosciences, 17, 649–666, https://doi.org/10.5194/bg-17-649-2020, https://doi.org/10.5194/bg-17-649-2020, 2020
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Today, sterols are widespread in plants, animals, and fungi but are almost absent in the oldest rocks. Microbial mats, representing the earliest complex ecosystems on Earth, were omnipresent in Precambrian marine environments and may have degraded the sterols at that time. Here we analyze the distribution of sterols through a microbial mat. This provides insight into how variations in biological and nonbiological factors affect the preservation of sterols in modern and ancient microbial mats.
Sarah Coffinet, Travis B. Meador, Lukas Mühlena, Kevin W. Becker, Jan Schröder, Qing-Zeng Zhu, Julius S. Lipp, Verena B. Heuer, Matthew P. Crump, and Kai-Uwe Hinrichs
Biogeosciences, 17, 317–330, https://doi.org/10.5194/bg-17-317-2020, https://doi.org/10.5194/bg-17-317-2020, 2020
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This study deals with two membrane lipids called BDGTs and PDGTs. Membrane lipids are molecules forming the cell envelope of all organisms. Different organisms produce different lipids thus they can be used to detect the presence of specific organisms in the environment. We analyzed the structure of these new lipids and looked for potential producers. We found that they are likely made by microbes emitting methane below the sediment surface and could be used to track these specific microbes.
Ying Wu, Kun Zhu, Jing Zhang, Moritz Müller, Shan Jiang, Aazani Mujahid, Mohd Fakharuddin Muhamad, and Edwin Sien Aun Sia
Biogeosciences, 16, 4517–4533, https://doi.org/10.5194/bg-16-4517-2019, https://doi.org/10.5194/bg-16-4517-2019, 2019
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Our understanding of terrestrial organic matter (TOM) in tropical peat-draining rivers remains limited, especially in Southeast Asia. We explored the characteristics of TOM via bulk parameters and lignin phenols of sediment in Malaysia. This showed that the most important plant source of the organic matter in these rivers is woody angiosperm C3 plants with limited diagenetic alteration. This slower degradation of TOM may be a link to higher total nitrogen content, especially for the small river.
Caitlyn R. Witkowski, Sylvain Agostini, Ben P. Harvey, Marcel T. J. van der Meer, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 16, 4451–4461, https://doi.org/10.5194/bg-16-4451-2019, https://doi.org/10.5194/bg-16-4451-2019, 2019
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Carbon dioxide concentrations (pCO2) in the atmosphere play an integral role in Earth system dynamics, especially climate. Past climates help us understand future ones, but reconstructing pCO2 over the geologic record remains a challenge. This research demonstrates new approaches for exploring past pCO2 via the carbon isotope fractionation in general algal lipids, which we test over a high CO2 gradient from a naturally occurring CO2 seep.
Yongli Zhou, Patrick Martin, and Moritz Müller
Biogeosciences, 16, 2733–2749, https://doi.org/10.5194/bg-16-2733-2019, https://doi.org/10.5194/bg-16-2733-2019, 2019
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We found that peatlands in coastal Sarawak, Borneo, export extremely humified organic matter, which dominates the riverine organic matter pool and conservatively mixes with seawater, while the freshly produced fraction is low and stable in concentration at all salinities. We estimated that terrigenous fractions, which showed high photolability, still account for 20 % of the coastal dissolved organic carbon pool, implying the importance of peat-derived organic matter in the coastal carbon cycle.
Kristin Doering, Claudia Ehlert, Philippe Martinez, Martin Frank, and Ralph Schneider
Biogeosciences, 16, 2163–2180, https://doi.org/10.5194/bg-16-2163-2019, https://doi.org/10.5194/bg-16-2163-2019, 2019
Alexandra N. Loginova, Sören Thomsen, Marcus Dengler, Jan Lüdke, and Anja Engel
Biogeosciences, 16, 2033–2047, https://doi.org/10.5194/bg-16-2033-2019, https://doi.org/10.5194/bg-16-2033-2019, 2019
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High primary production in the Peruvian upwelling system is followed by rapid heterotrophic utilization of organic matter and supports the formation of one of the most intense oxygen minimum zones (OMZs) in the world. Here, we estimated vertical fluxes of oxygen and dissolved organic matter (DOM) from the surface to the OMZ. Our results suggest that DOM remineralization substantially reduces oxygen concentration in the upper water column and controls the shape of the upper oxycline.
Carolina Cisternas-Novoa, Frédéric A. C. Le Moigne, and Anja Engel
Biogeosciences, 16, 927–947, https://doi.org/10.5194/bg-16-927-2019, https://doi.org/10.5194/bg-16-927-2019, 2019
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We investigate the composition and vertical fluxes of POM in two deep basins of the Baltic Sea (GB: Gotland Basin and LD: Landsort Deep). The two basins showed different O2 regimes resulting from the intrusion of oxygen-rich water from the North Sea that ventilated the deep waters in GB, but not in LD.
In GB, O2 intrusions lead to a high abundance of manganese oxides that aggregate with POM, altering its composition and vertical flux and contributing to a higher POC transfer efficiency in GB.
Marina Zamanillo, Eva Ortega-Retuerta, Sdena Nunes, Pablo Rodríguez-Ros, Manuel Dall'Osto, Marta Estrada, Maria Montserrat Sala, and Rafel Simó
Biogeosciences, 16, 733–749, https://doi.org/10.5194/bg-16-733-2019, https://doi.org/10.5194/bg-16-733-2019, 2019
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Many marine microorganisms produce polysaccharide-rich transparent exopolymer particles (TEPs) for rather unknown reasons but with important consequences for the ocean carbon cycle, sea–air gas exchange and formation of organic aerosols. Here we compare surface–ocean distributions of TEPs and physical, chemical and biological variables along a N–S transect in the Atlantic Ocean. Our data suggest that phytoplankton and not bacteria are the main TEP producers, and solar radiation acts as a sink.
Michael Philben, Sara Butler, Sharon A. Billings, Ronald Benner, Kate A. Edwards, and Susan E. Ziegler
Biogeosciences, 15, 6731–6746, https://doi.org/10.5194/bg-15-6731-2018, https://doi.org/10.5194/bg-15-6731-2018, 2018
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We explored the relationship between chemical composition and the temperature sensitivity of moss decomposition using 959-day lab incubations. Mass loss was low despite the predominance of carbohydrates, indicating the persistence of labile C. Scanning electron microscopy revealed little change in the moss cell-wall structure. These results suggest that the moss cell-wall matrix protects labile C from decomposition, contributing to the globally important stocks of moss-derived C.
Yinghui Wang, Robert G. M. Spencer, David C. Podgorski, Anne M. Kellerman, Harunur Rashid, Phoebe Zito, Wenjie Xiao, Dandan Wei, Yuanhe Yang, and Yunping Xu
Biogeosciences, 15, 6637–6648, https://doi.org/10.5194/bg-15-6637-2018, https://doi.org/10.5194/bg-15-6637-2018, 2018
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With global warming, thawing of permafrost releases dissolved organic matter (DOM) into streams. By analyzing DOM along an alpine stream on the Qinghai–Tibet Plateau, we found DOM was mainly from the active layer, but with deepening of the active layer, the contribution of the deep permafrost layer increased, causing a change in the chemical composition of DOM. From the head- to downstream, DOM is undergoing rapid degradation, but some components are persistent and can be transported downstream.
Sergio Balzano, Julie Lattaud, Laura Villanueva, Sebastiaan W. Rampen, Corina P. D. Brussaard, Judith van Bleijswijk, Nicole Bale, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 15, 5951–5968, https://doi.org/10.5194/bg-15-5951-2018, https://doi.org/10.5194/bg-15-5951-2018, 2018
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We tried to identify the microbes which biosynthesize a class of lipids widespread in seawater, the long chain alkyl diols (LCDs). We could not find any microorganism likely involved in the production of LCDs. The amounts of LCDs found are too high to be produced by living organisms and are likely to be part of the refractory organic matter persisting for long periods in the water column.
Julie Lattaud, Frédérique Kirkels, Francien Peterse, Chantal V. Freymond, Timothy I. Eglinton, Jens Hefter, Gesine Mollenhauer, Sergio Balzano, Laura Villanueva, Marcel T. J. van der Meer, Ellen C. Hopmans, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 15, 4147–4161, https://doi.org/10.5194/bg-15-4147-2018, https://doi.org/10.5194/bg-15-4147-2018, 2018
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Long-chain diols (LCDs) are biomarkers that occur widespread in marine environments and also in lakes and rivers. In this study, we looked at the distribution of LCDs in three river systems (Godavari, Danube, and Rhine) in relation to season, precipitation, and temperature. We found out that the LCDs are likely being produced in calm areas of the river systems and that marine LCDs have a different distribution than riverine LCDs.
Marcel Bliedtner, Imke K. Schäfer, Roland Zech, and Hans von Suchodoletz
Biogeosciences, 15, 3927–3936, https://doi.org/10.5194/bg-15-3927-2018, https://doi.org/10.5194/bg-15-3927-2018, 2018
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In this study, we systematically analyze leaf wax derived n-alkane patterns in eastern Georgia to test their potential for paleoenvironmental reconstructions in the semi-humid to semi-arid central southern Caucasus region. We investigated the influence of vegetation types on the leaf wax signal in modern plants and topsoil material. Our results show distinct and systematic differences in the n-alkane patterns between vegetation types and prove their potential for vegetation reconstructions.
Mathieu Rembauville, Stéphane Blain, Clara Manno, Geraint Tarling, Anu Thompson, George Wolff, and Ian Salter
Biogeosciences, 15, 3071–3084, https://doi.org/10.5194/bg-15-3071-2018, https://doi.org/10.5194/bg-15-3071-2018, 2018
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Sinking phytoplankton from the surface ocean provide the principal energy source to deep-ocean ecosystems. Our aim was to understand how different phytoplankton communities impact the chemical nature of this sinking material. We show certain types of phytoplankton can preferentially export energy-rich storage compounds to the seafloor. Any climate-driven effects on phytoplankton community structure could thus impact remote deep-ocean ecosystems thousands of kilometres beneath the surface.
Xiaocong Wei, Xiangwen Deng, Wenhua Xiang, Pifeng Lei, Shuai Ouyang, Hongfang Wen, and Liang Chen
Biogeosciences, 15, 2991–3002, https://doi.org/10.5194/bg-15-2991-2018, https://doi.org/10.5194/bg-15-2991-2018, 2018
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Karst is a kind of typical calcium-rich environment, which is widely distributed. We measured the Ca2+ content of 41 plant species, as well as soil total Ca2+ and exchange Ca2+. We found out that different plants have different ways to high Ca2+ adaptation. According to the different high Ca2+ adaptation of the 17 dominant species, we divided them into 3 categories: Ca-indifferent plants, high-Ca plants and low-Ca plants. Our results can provide a theoretical basis for vegetation restoration.
Janina G. Stapel, Georg Schwamborn, Lutz Schirrmeister, Brian Horsfield, and Kai Mangelsdorf
Biogeosciences, 15, 1969–1985, https://doi.org/10.5194/bg-15-1969-2018, https://doi.org/10.5194/bg-15-1969-2018, 2018
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Climate warming in the Arctic results in thawing of permafrost deposits. This promotes the accessibility of freeze-locked old organic matter (OM) accumulated during the past. Characterizing OM of different depositional ages, we were able to show that OM from last glacial Yedoma deposits possess the highest potential to provide organic substrates such as acetate for microbial greenhouse gas production and therefore to accelerate the carbon–climate feedback cycle during ongoing global warming.
Changchun Huang, Quanliang Jiang, Ling Yao, Hao Yang, Chen Lin, Tao Huang, A-Xing Zhu, and Yimin Zhang
Biogeosciences, 15, 1827–1841, https://doi.org/10.5194/bg-15-1827-2018, https://doi.org/10.5194/bg-15-1827-2018, 2018
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The latitudinal dependency of POC / PON in ocean and inland water is significant, regulated by trophic state and climate, etc. factors. POC / PON significantly increased from coastal water (6.89 ± 2.38) to open ocean (7.59 ± 4.22) with the increasing rate of 0.0024 / km. The re-examination of the global relationship between, and variations in, POC and PON could be important for the global and regional coupling between the carbon and nitrogen cycles in the ocean and freshwater.
Nicole J. Bale, Tracy A. Villareal, Ellen C. Hopmans, Corina P. D. Brussaard, Marc Besseling, Denise Dorhout, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 15, 1229–1241, https://doi.org/10.5194/bg-15-1229-2018, https://doi.org/10.5194/bg-15-1229-2018, 2018
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Associations between diatoms and N-fixing cyanobacteria (diatom–diazotroph associations, DDAs) play an important role in the N cycle of the tropical North Atlantic. Heterocysts are the site of N fixation and contain unique glycolipids. We measured these glycolipids in the water column and surface sediment from the tropical North Atlantic. We found a significant correlation between the concentration of glycolipid and of DDAs, strengthening their application as biomarkers.
Laurent Jeanneau, Richard Rowland, and Shreeram Inamdar
Biogeosciences, 15, 973–985, https://doi.org/10.5194/bg-15-973-2018, https://doi.org/10.5194/bg-15-973-2018, 2018
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The source of particulate organic matter in headwaters during storm events remains an open question. We use the molecular composition of organic matter sampled during four spring–summer storms and compare it to potential sources. We identify litter, streambed and vicinal soils as the main sources of particulate organic matter. Their proportions depend on (i) the size of the catchment and (ii) the rain event.
Suhui Ma, Feng He, Di Tian, Dongting Zou, Zhengbing Yan, Yulong Yang, Tiancheng Zhou, Kaiyue Huang, Haihua Shen, and Jingyun Fang
Biogeosciences, 15, 693–702, https://doi.org/10.5194/bg-15-693-2018, https://doi.org/10.5194/bg-15-693-2018, 2018
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Plant carbon (C) content is critical to the assessment of the global C cycle. Our results showed that the global average C contents in organs were significantly lower than a canonical value of 50 %. Plant C content tended to decrease with increasing latitude, and life form explained more variation than climate. Our findings suggest that specific C content values of different organs and life forms should be incorporated into the estimations of regional and global vegetation biomass C stocks.
Martina Sollai, Ellen C. Hopmans, Nicole J. Bale, Anchelique Mets, Lisa Warden, Matthias Moros, and Jaap S. Sinninghe Damsté
Biogeosciences, 14, 5789–5804, https://doi.org/10.5194/bg-14-5789-2017, https://doi.org/10.5194/bg-14-5789-2017, 2017
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The Baltic Sea is characterized by recurring summer phytoplankton blooms, dominated by a few cyanobacterial species. These bacteria are able to use dinitrogen gas as the source for nitrogen and produce very specific lipids. We analyzed these lipids in a sediment core to study their presence over the past 7000 years. This reveals that cyanobacterial blooms have not only occurred in the last decades but were common at times when the Baltic was connected to the North Sea.
Jordon D. Hemingway, Daniel H. Rothman, Sarah Z. Rosengard, and Valier V. Galy
Biogeosciences, 14, 5099–5114, https://doi.org/10.5194/bg-14-5099-2017, https://doi.org/10.5194/bg-14-5099-2017, 2017
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The balance between organic matter (OM) fixation and decay is a major control on atmospheric CO2 concentrations. Understanding the environmental, chemical, and physical mechanisms that control the distribution of OM decay rates is therefore critical for constraining the global carbon cycle. In this manuscript, we derive a method to relate OM reactivity to its isotope composition using a kinetic model and provide a novel framework to discern the controls on OM decay rates.
Zuchuan Li and Nicolas Cassar
Biogeosciences, 14, 5015–5027, https://doi.org/10.5194/bg-14-5015-2017, https://doi.org/10.5194/bg-14-5015-2017, 2017
Marie Denis, Laurent Jeanneau, Patrice Petitjean, Anaëlle Murzeau, Marine Liotaud, Louison Yonnet, and Gérard Gruau
Biogeosciences, 14, 5039–5051, https://doi.org/10.5194/bg-14-5039-2017, https://doi.org/10.5194/bg-14-5039-2017, 2017
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The results of this study highlight the changes of DOM composition in soil solutions and surface runoff, probably controlled by water-table dynamics and pre-event hydrological conditions. These changes should be taken into account for a better understanding of micropollutant mobility. Moreover, this work has implications for modeling DOM export in headwater catchments, as many studies assume that DOM transfer during storm events consists of the flushing of pre-existing soil solution DOM.
Dandan Duan, Dainan Zhang, Yu Yang, Jingfu Wang, Jing'an Chen, and Yong Ran
Biogeosciences, 14, 4009–4022, https://doi.org/10.5194/bg-14-4009-2017, https://doi.org/10.5194/bg-14-4009-2017, 2017
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Neutral carbohydrates, carbon isotopic composition, and algal productivity proxies in three reservoir sediment cores, South China, were investigated. Monosaccharide compositions and diagnostic parameters indicate a predominant contribution of phytoplankton in the sediment cores. Algal monosaccharide content is highly related to the algal productivity and increasing mean air temperature, but not to nutrient input, demonstrating the effect of climate warming in low-latitude regions.
Ylva van Meeningen, Guy Schurgers, Riikka Rinnan, and Thomas Holst
Biogeosciences, 14, 4045–4060, https://doi.org/10.5194/bg-14-4045-2017, https://doi.org/10.5194/bg-14-4045-2017, 2017
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Leaf scale measurements have been performed on English oak, European beech and Norway spruce at a field site in Denmark to study the release of volatile compounds in response to a change in light. Whilst some compounds, like isoprene and sabinene, increased with increasing light, other compounds, like camphene, showed no light response for most of the trees. This can help to increase our knowledge of how species and compounds respond to light and to possibly improve how they can be modeled.
Shuwen Sun, Enno Schefuß, Stefan Mulitza, Cristiano M. Chiessi, André O. Sawakuchi, Matthias Zabel, Paul A. Baker, Jens Hefter, and Gesine Mollenhauer
Biogeosciences, 14, 2495–2512, https://doi.org/10.5194/bg-14-2495-2017, https://doi.org/10.5194/bg-14-2495-2017, 2017
Anja Engel, Hannes Wagner, Frédéric A. C. Le Moigne, and Samuel T. Wilson
Biogeosciences, 14, 1825–1838, https://doi.org/10.5194/bg-14-1825-2017, https://doi.org/10.5194/bg-14-1825-2017, 2017
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To better understand the role of oxygen for the biological carbon pump, we studied particle fluxes through hypoxic waters in the eastern tropical North Atlantic. Attenuation of organic carbon fluxes over depth was lower than expected from seawater temperatures, indicating co-effects of oxygen concentration. Differences were observed for individual organic components, suggesting that future carbon export fluxes may depend on changes in surface ocean organic matter quality under global change.
Julie Tolu, Johan Rydberg, Carsten Meyer-Jacob, Lorenz Gerber, and Richard Bindler
Biogeosciences, 14, 1773–1792, https://doi.org/10.5194/bg-14-1773-2017, https://doi.org/10.5194/bg-14-1773-2017, 2017
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In this study, we demonstrated that the composition of sediment organic matter can vary significantly within a single lake, in a close relationship with the spatial patterns of elemental inorganic geochemistry. This results from a combination of different bio-, geo- and physicochemical lake factors, and our results highlight that the potential for large spatial variability across lakes should be considered when studying carbon, nutrient and trace element cycling at lake and global scales.
Cited articles
Baxter, A. J., Hopmans, E. C., Russell, J. M., and Sinninghe Damsté, J. S.:
Bacterial GMGTs in East African lake sediments: Their potential as palaeotemperature indicators,
Geochim. Cosmochim. Ac.,
259, 155–169, https://doi.org/10.1016/j.gca.2019.05.039, 2019.
Beales, N.:
Adaptation of Microorganisms to Cold Temperatures, Weak Acid Preservatives, Low pH, and Osmotic Stress: A Review,
Compr. Rev. Food Sci. F.,
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Buckles, L. K., Weijers, J. W. H., Verschuren, D., and Sinninghe Damsté, J. S.:
Sources of core and intact branched tetraether membrane lipids in the lacustrine environment: Anatomy of Lake Challa and its catchment, equatorial East Africa,
Geochim. Cosmochim. Ac.,
140, 106–126, https://doi.org/10.1016/j.gca.2014.04.042, 2014.
Cao, J., Rao, Z., Shi, F., and Jia, G.: Ice formation on lake surfaces in winter causes warm-season bias of lacustrine brGDGT temperature estimates, Biogeosciences, 17, 2521–2536, https://doi.org/10.5194/bg-17-2521-2020, 2020.
Crump, S. E., Miller, G. H., Power, M., Sepúlveda, J., Dildar, N., Coghlan, M., and Bunce, M.:
Arctic shrub colonization lagged peak postglacial warmth: Molecular evidence in lake sediment from Arctic Canada,
Glob. Change Biol.,
5, 1–13, https://doi.org/10.1111/gcb.14836, 2019.
Dang, X., Ding, W., Yang, H., Pancost, R. D., Naafs, B. D. A., Xue, J., Lin, X., Lu, J., and Xie, S.:
Different temperature dependence of the bacterial brGDGT isomers in 35 Chinese lake sediments compared to that in soils,
Org. Geochem.,
119, 72–79, https://doi.org/10.1016/j.orggeochem.2018.02.008, 2018.
Dang, X. Y., Xue, J. T., Yang, H., and Xie, S. C.:
Environmental impacts on the distribution of microbial tetraether lipids in Chinese lakes with contrasting pH: Implications for lacustrine paleoenvironmental reconstructions,
Sci. China Earth Sci.,
59, 939–950, https://doi.org/10.1007/s11430-015-5234-z, 2016.
De Jonge, C., Hopmans, E. C., Stadnitskaia, A., Rijpstra, W. I. C., Hofland, R., Tegelaar, E., and Sinninghe Damsté, J. S.:
Identification of novel penta- and hexamethylated branched glycerol dialkyl glycerol tetraethers in peat using HPLC-MS2, GC-MS and GC-SMB-MS,
Org. Geochem.,
54, 78–82, https://doi.org/10.1016/j.orggeochem.2012.10.004, 2013.
De Jonge, C., Stadnitskaia, A., Hopmans, E. C., Cherkashov, G., Fedotov, A., and Sinninghe Damsté, J. S.:
In situ produced branched glycerol dialkyl glycerol tetraethers in suspended particulate matter from the Yenisei River, Eastern Siberia,
Geochim. Cosmochim. Ac.,
125, 476–491, https://doi.org/10.1016/j.gca.2013.10.031, 2014a.
De Jonge, C., Hopmans, E. C., Zell, C. I., Kim, J. H., Schouten, S., and Sinninghe Damsté, J. S.:
Occurrence and abundance of 6-methyl branched glycerol dialkyl glycerol tetraethers in soils: Implications for palaeoclimate reconstruction,
Geochim. Cosmochim. Ac.,
141, 97–112, https://doi.org/10.1016/j.gca.2014.06.013, 2014b.
De Jonge, C., Radujković, D., Sigurdsson, B. D., Weedon, J. T., Janssens, I., and Peterse, F.:
Lipid biomarker temperature proxy responds to abrupt shift in the bacterial community composition in geothermally heated soils,
Org. Geochem.,
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de Wet, G. A., Castañeda, I. S., DeConto, R. M., and Brigham-Grette, J.:
A high-resolution mid-Pleistocene temperature record from Arctic Lake El'gygytgyn: A 50 kyr super interglacial from MIS 33 to MIS 31?,
Earth Planet. Sc. Lett.,
436, 56–63, https://doi.org/10.1016/j.epsl.2015.12.021, 2016.
Dearing Crampton-Flood, E., Peterse, F., Munsterman, D., and Sinninghe Damsté, J. S.:
Using tetraether lipids archived in North Sea Basin sediments to extract North Western European Pliocene continental air temperatures,
Earth Planet. Sc. Lett.,
490, 193–205, https://doi.org/10.1016/j.epsl.2018.03.030, 2018.
Ding, S., Xu, Y., Wang, Y., He, Y., Hou, J., Chen, L., and He, J.-S.: Distribution of branched glycerol dialkyl glycerol tetraethers in surface soils of the Qinghai–Tibetan Plateau: implications of brGDGTs-based proxies in cold and dry regions, Biogeosciences, 12, 3141–3151, https://doi.org/10.5194/bg-12-3141-2015, 2015.
Ding, S., Schwab, V. F., Ueberschaar, N., Roth, V.-N., Lange, M., Xu, Y., Gleixner, G., and Pohnert, G.:
Identification of novel 7-methyl and cyclopentanyl branched glycerol dialkyl glycerol tetraethers in lake sediments,
Org. Geochem.,
102, 52–58, https://doi.org/10.1016/J.ORGGEOCHEM.2016.09.009, 2016.
Fick, S. E. and Hijmans, R. J.:
WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas,
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37, 4302–4315, https://doi.org/10.1002/joc.5086, 2017.
Foster, L. C., Pearson, E. J., Juggins, S., Hodgson, D. A., Saunders, K. M., Verleyen, E., and Roberts, S. J.:
Development of a regional glycerol dialkyl glycerol tetraether (GDGT)-temperature calibration for Antarctic and sub-Antarctic lakes,
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Guo, J., Glendell, M., Meersmans, J., Kirkels, F., Middelburg, J. J., and Peterse, F.: Assessing branched tetraether lipids as tracers of soil organic carbon transport through the Carminowe Creek catchment (southwest England), Biogeosciences, 17, 3183–3201, https://doi.org/10.5194/bg-17-3183-2020, 2020.
Hanna, A. J. M., Shanahan, T. M., and Allison, M. A.:
Distribution of branched GDGTs in surface sediments from the Colville River, Alaska: Implications for the MBT'/CBT paleothermometer in Arctic marine sediments,
J. Geophys. Res.-Biogeo.,
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Harning, D. J., Andrews, J. T., Belt, S. T., Cabedo-Sanz, P., Geirsdóttir, Á., Dildar, N., Miller, G. H., and Sepúlveda, J.:
Sea Ice Control on Winter Subsurface Temperatures of the North Iceland Shelf During the Little Ice Age: A TEX86 Calibration Case Study,
Paleoclimatology and Paleometeorology,
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Hopmans, E. C., Weijers, J. W. ., Schefuß, E., Herfort, L., Sinninghe Damsté, J. S., and Schouten, S.:
A novel proxy for terrestrial organic matter in sediments based on branched and isoprenoid tetraether lipids,
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Hu, J., Zhou, H., Peng, P., and Spiro, B.:
Seasonal variability in concentrations and fluxes of glycerol dialkyl glycerol tetraethers in Huguangyan Maar Lake, SE China: Implications for the applicability of the MBT-CBT paleotemperature proxy in lacustrine settings,
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Li, F., Zhang, C. L., Wang, S., Chen, Y., Sun, C., Dong, H., Li, W., Klotz, M. G., and Hedlund, B. P.:
Production of branched tetraether lipids in Tibetan hot springs: A possible linkage to nitrite reduction by thermotolerant or thermophilic bacteria?,
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Loomis, S. E., Russell, J. M., Eggermont, H., Verschuren, D., and Sinninghe Damsté, J. S.:
Effects of temperature, pH and nutrient concentration on branched GDGT distributions in East African lakes: Implications for paleoenvironmental reconstruction,
Org. Geochem.,
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Lumley, T.:
leaps: Regression Subset Selection,
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Miller, D. R., Habicht, M. H., Keisling, B. A., Castañeda, I. S., and Bradley, R. S.: A 900-year New England temperature reconstruction from in situ seasonally produced branched glycerol dialkyl glycerol tetraethers (brGDGTs), Clim. Past, 14, 1653–1667, https://doi.org/10.5194/cp-14-1653-2018, 2018.
Miller, G. H., Alley, R. B., Brigham-Grette, J., Fitzpatrick, J. J., Polyak, L., Serreze, M. C., and White, J. W. C.:
Arctic amplification: Can the past constrain the future?,
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Sources of glycerol dialkyl glycerol tetraethers (GDGTs) in catchment soils, water column and sediments of Lake Rotsee (Switzerland) – Implications for the application of GDGT-based proxies for lakes,
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Ng, S. L. and King, R. H.:
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Ning, D., Zhang, E., Shulmeister, J., Chang, J., Sun, W., and Ni, Z.:
Holocene mean annual air temperature (MAAT) reconstruction based on branched glycerol dialkyl glycerol tetraethers from Lake Ximenglongtan, southwestern China,
Org. Geochem.,
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Pearson, E. J., Juggins, S., Talbot, H. M., Weckström, J., Rosén, P., Ryves, D. B., Roberts, S. J., and Schmidt, R.:
A lacustrine GDGT-temperature calibration from the Scandinavian Arctic to Antarctic: Renewed potential for the application of GDGT-paleothermometry in lakes,
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Pérez-Angel, L. C., Sepúlveda, J., Molnar, P., Montes, C., Rajagopalan, B., Snell, K., Gonzalez-Arango, C., and Dildar, N.:
Soil and Air Temperature Calibrations Using Branched GDGTs for the Tropical Andes of Colombia: Toward a Pan-Tropical Calibration,
Geochem. Geophy. Geosy.,
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Peterse, F., Meer, J. Van Der, Schouten, S., Weijers, J. W. H., Fierer, N., Jackson, R. B., Kim, J., and Damste, J. S. S.:
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Peterse, F., Vonk, J. E., Holmes, R. M., Giosan, L., Zimov, N., and Eglinton, T. I.:
Branched glycerol dialkyl glycerol tetraethers in Arctic lake sediments: Sources and implications for paleothermometry at high latitudes,
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Qian, S., Yang, H., Dong, C., Wang, Y., Wu, J., Pei, H., Dang, X., Lu, J., Zhao, S., and Xie, S.:
Rapid response of fossil tetraether lipids in lake sediments to seasonal environmental variables in a shallow lake in central China: Implications for the use of tetraether-based proxies,
Org. Geochem.,
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Raberg, J. H., Harning, D. J., Crump, S. E., de Wet, G. A., Blumm, A., Kopf, S., Geirsdóttir, Á., Miller, G. H., and Sepúlveda, J.: brGDGT distributions and environmental parameters of lake sediments from the Eastern Canadian Arctic and Iceland, 2003–2019, PANGAEA [data set], https://doi.pangaea.de/10.1594/PANGAEA.931003, 2021.
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Russell, J. M., Hopmans, E. C., Loomis, S. E., Liang, J., and Sinninghe Damsté, J. S.:
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Short summary
BrGDGT lipids are a proxy for temperature in lake sediments, but other parameters like pH can influence them, and seasonality can affect the temperatures they record. We find a warm-season bias at 43 new high-latitude sites. We also present a new method that deconvolves the effects of temperature, pH, and conductivity and generate global calibrations for these variables. Our study provides new paleoclimate tools, insight into brGDGTs at the biochemical level, and a new method for future study.
BrGDGT lipids are a proxy for temperature in lake sediments, but other parameters like pH can...
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