Articles | Volume 18, issue 20
https://doi.org/10.5194/bg-18-5681-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-18-5681-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Evaluation of denitrification and decomposition from three biogeochemical models using laboratory measurements of N2, N2O and CO2
Climate-Smart Agriculture, Thünen Institute, Braunschweig, Germany
Reinhard Well
Climate-Smart Agriculture, Thünen Institute, Braunschweig, Germany
Rene Dechow
Climate-Smart Agriculture, Thünen Institute, Braunschweig, Germany
Jan Reent Köster
Climate-Smart Agriculture, Thünen Institute, Braunschweig, Germany
Mohammad Ibrahim Khalil
UCD School of Biology and Environmental Science, University College Dublin, and Prudence College Dublin, Dublin, Ireland
Simone Merl
Climate-Smart Agriculture, Thünen Institute, Braunschweig, Germany
Andreas Rode
Ingenieurbüro Landwirtschaft und Umwelt (IGLU), Göttingen, Germany
Bianca Ziehmer
Department of Viticulture and Agriculture, Ministry of Economics Affairs, Transport, Agriculture and Viticulture Rhineland Palatinate (MWVLW), Mainz, Germany
Amanda Matson
Climate-Smart Agriculture, Thünen Institute, Braunschweig, Germany
Hongxing He
Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, 901 83 Umeå, Sweden
Department of Geography, McGill University, Burnside Hall, 805 Sherbrooke Street West, Montréal, Quebec H3A OB9, Canada
Related authors
No articles found.
Victoria Nasser, René Dechow, Mirjam Helfrich, Ana Meijide, Pauline Sophie Rummel, Heinz-Josef Koch, Reiner Ruser, Lisa Essich, and Klaus Dittert
EGUsphere, https://doi.org/10.5194/egusphere-2024-2849, https://doi.org/10.5194/egusphere-2024-2849, 2024
Short summary
Short summary
This study evaluated the impact of diverse cover crops on topsoil mineral nitrogen (SMN), N2O emissions, and carbon (C) sequestration. Non-legume cover crops reduced SMN levels, showed potential for mitigating indirect N2O emissions, and increased C sequestration, but did not significantly reduce cumulative N2O emissions compared to fallow. The results highlight the need for tailored cover crop strategies to balance SMN capture, N2O emissions, and C sequestration effectively.
Hongxing He, Ian B. Strachan, and Nigel T. Roulet
EGUsphere, https://doi.org/10.5194/egusphere-2024-2679, https://doi.org/10.5194/egusphere-2024-2679, 2024
Short summary
Short summary
This study applied the CoupModel to simulate carbon dynamics and ecohydrology for a restored peatland and evaluated the responses of the simulated carbon fluxes to varying acrotelm thickness and climate. The results show that CoupModel can simulate the coupled carbon and ecohydrology dynamics for the restored peatland system, and the restored peatland has less resilience in its C uptake functions than pristine peatlands under a changing climate.
Konstantin Aiteew, Jarno Rouhiainen, Claas Nendel, and René Dechow
Geosci. Model Dev., 17, 1349–1385, https://doi.org/10.5194/gmd-17-1349-2024, https://doi.org/10.5194/gmd-17-1349-2024, 2024
Short summary
Short summary
This study evaluated the biogeochemical model MONICA and its performance in simulating soil organic carbon changes. MONICA can reproduce plant growth, carbon and nitrogen dynamics, soil water and temperature. The model results were compared with five established carbon turnover models. With the exception of certain sites, adequate reproduction of soil organic carbon stock change rates was achieved. The MONICA model was capable of performing similar to or even better than the other models.
Jyrki Jauhiainen, Juha Heikkinen, Nicholas Clarke, Hongxing He, Lise Dalsgaard, Kari Minkkinen, Paavo Ojanen, Lars Vesterdal, Jukka Alm, Aldis Butlers, Ingeborg Callesen, Sabine Jordan, Annalea Lohila, Ülo Mander, Hlynur Óskarsson, Bjarni D. Sigurdsson, Gunnhild Søgaard, Kaido Soosaar, Åsa Kasimir, Brynhildur Bjarnadottir, Andis Lazdins, and Raija Laiho
Biogeosciences, 20, 4819–4839, https://doi.org/10.5194/bg-20-4819-2023, https://doi.org/10.5194/bg-20-4819-2023, 2023
Short summary
Short summary
The study looked at published data on drained organic forest soils in boreal and temperate zones to revisit current Tier 1 default emission factors (EFs) provided by the IPCC Wetlands Supplement. We examined the possibilities of forming more site-type specific EFs and inspected the potential relevance of environmental variables for predicting annual soil greenhouse gas balances by statistical models. The results have important implications for EF revisions and national emission reporting.
Hongxing He, Tim Moore, Elyn R. Humphreys, Peter M. Lafleur, and Nigel T. Roulet
Hydrol. Earth Syst. Sci., 27, 213–227, https://doi.org/10.5194/hess-27-213-2023, https://doi.org/10.5194/hess-27-213-2023, 2023
Short summary
Short summary
We applied CoupModel to quantify the impacts of natural and human disturbances to adjacent water bodies in regulating net CO2 uptake of northern peatlands. We found that 1 m drops of the water level at the beaver pond lower the peatland water table depth 250 m away by 0.15 m and reduce the peatland net CO2 uptake by 120 g C m-2 yr-1. Therefore, although bogs are ombrotrophic rainfed systems, the boundary hydrological conditions play an important role in regulating water storage and CO2 uptake.
Lena Rohe, Traute-Heidi Anderson, Heinz Flessa, Anette Goeske, Dominika Lewicka-Szczebak, Nicole Wrage-Mönnig, and Reinhard Well
Biogeosciences, 18, 4629–4650, https://doi.org/10.5194/bg-18-4629-2021, https://doi.org/10.5194/bg-18-4629-2021, 2021
Short summary
Short summary
This is the first experimental setup combining a complex set of methods (microbial inhibitors and isotopic approaches) to differentiate between N2O produced by fungi or bacteria during denitrification in three soils. Quantifying the fungal fraction with inhibitors was not successful due to large amounts of uninhibited N2O production. All successful methods suggested a small or missing fungal contribution. Artefacts occurring with microbial inhibition to determine N2O fluxes are discussed.
Lena Rohe, Bernd Apelt, Hans-Jörg Vogel, Reinhard Well, Gi-Mick Wu, and Steffen Schlüter
Biogeosciences, 18, 1185–1201, https://doi.org/10.5194/bg-18-1185-2021, https://doi.org/10.5194/bg-18-1185-2021, 2021
Short summary
Short summary
Total denitrification, i.e. N2O and (N2O + N2) fluxes, of repacked soil cores were analysed for different combinations of soils and water contents. Prediction accuracy of (N2O + N2) fluxes was highest with combined proxies for oxygen demand (CO2 flux) and oxygen supply (anaerobic soil volume fraction). Knowledge of denitrification completeness (product ratio) improved N2O predictions. Substitutions with cheaper proxies (soil organic matter, empirical diffusivity) reduced prediction accuracy.
Hongxing He, Per-Erik Jansson, and Annemieke I. Gärdenäs
Geosci. Model Dev., 14, 735–761, https://doi.org/10.5194/gmd-14-735-2021, https://doi.org/10.5194/gmd-14-735-2021, 2021
Short summary
Short summary
This study presents the integration of the phosphorus (P) cycle into CoupModel (v6.0, Coup-CNP). The extended Coup-CNP, which explicitly considers the symbiosis between soil microbes and plant roots, enables simulations of coupled C, N, and P dynamics for terrestrial ecosystems. Simulations from the new Coup-CNP model provide strong evidence that P fluxes need to be further considered in studies of how ecosystems and C turnover react to climate change.
Dominika Lewicka-Szczebak, Maciej Piotr Lewicki, and Reinhard Well
Biogeosciences, 17, 5513–5537, https://doi.org/10.5194/bg-17-5513-2020, https://doi.org/10.5194/bg-17-5513-2020, 2020
Short summary
Short summary
We present the first validation of N2O isotopic approaches for estimating N2O source pathways and N2O reduction. These approaches are widely used for tracing soil nitrogen cycling, but the results of these estimations are very uncertain. Here we report the results from parallel treatments allowing for precise validation of these approaches, and we propose the best strategies for results interpretation, including the new idea of an isotope model integrating three isotopic signatures of N2O.
Dominika Lewicka-Szczebak and Reinhard Well
SOIL, 6, 145–152, https://doi.org/10.5194/soil-6-145-2020, https://doi.org/10.5194/soil-6-145-2020, 2020
Short summary
Short summary
This study aimed at comparison of various experimental strategies for incubating soil samples to determine the N2 flux. Such experiments require addition of isotope tracer, i.e. nitrogen fertilizer enriched in heavy nitrogen isotopes (15N). Here we compared the impact of soil homogenization and mixing with the tracer and tracer injection to the intact soil cores. The results are well comparable: both techniques would provide similar conclusions on the magnitude of N2 flux.
Pauline Sophie Rummel, Birgit Pfeiffer, Johanna Pausch, Reinhard Well, Dominik Schneider, and Klaus Dittert
Biogeosciences, 17, 1181–1198, https://doi.org/10.5194/bg-17-1181-2020, https://doi.org/10.5194/bg-17-1181-2020, 2020
Short summary
Short summary
Chemical composition of plant litter controls C availability for biological N transformation processes in soil. In this study, we showed that easily degradable maize shoots stimulated microbial respiration and mineralization leading to high N2O formation in litter-associated hot spots. A higher share of slowly degradable C compounds and lower concentrations of water-soluble N restricted N2O emissions from maize roots. Bacterial community structure reflected degradability of maize litter.
Jyrki Jauhiainen, Jukka Alm, Brynhildur Bjarnadottir, Ingeborg Callesen, Jesper R. Christiansen, Nicholas Clarke, Lise Dalsgaard, Hongxing He, Sabine Jordan, Vaiva Kazanavičiūtė, Leif Klemedtsson, Ari Lauren, Andis Lazdins, Aleksi Lehtonen, Annalea Lohila, Ainars Lupikis, Ülo Mander, Kari Minkkinen, Åsa Kasimir, Mats Olsson, Paavo Ojanen, Hlynur Óskarsson, Bjarni D. Sigurdsson, Gunnhild Søgaard, Kaido Soosaar, Lars Vesterdal, and Raija Laiho
Biogeosciences, 16, 4687–4703, https://doi.org/10.5194/bg-16-4687-2019, https://doi.org/10.5194/bg-16-4687-2019, 2019
Short summary
Short summary
We collated peer-reviewed publications presenting GHG flux data for drained organic forest soils in boreal and temperate climate zones, focusing on data that have been used, or have the potential to be used, for estimating net annual soil GHG emission/removals. We evaluated the methods in data collection and identified major gaps in background/environmental data. Based on these, we developed suggestions for future GHG data collection to increase data applicability in syntheses and inventories.
Reinhard Well, Martin Maier, Dominika Lewicka-Szczebak, Jan-Reent Köster, and Nicolas Ruoss
Biogeosciences, 16, 2233–2246, https://doi.org/10.5194/bg-16-2233-2019, https://doi.org/10.5194/bg-16-2233-2019, 2019
Short summary
Short summary
Denitrification is a key process in the soil nitrogen cycle but poorly investigated due to methodical limitations. The 15N gas flux method is currently the only approach allowing field measurement of denitrification but was subject to bias due to unaccounted fluxes of 15N-labelled gaseous denitrification products to the subsoil. We used field flux experiments and diffusion–reaction modelling to estimate this source of error and developed an approach to correct denitrification rates.
Syahrul Kurniawan, Marife D. Corre, Amanda L. Matson, Hubert Schulte-Bisping, Sri Rahayu Utami, Oliver van Straaten, and Edzo Veldkamp
Biogeosciences, 15, 5131–5154, https://doi.org/10.5194/bg-15-5131-2018, https://doi.org/10.5194/bg-15-5131-2018, 2018
Short summary
Short summary
Our study generates information to aid policies and improve soil management practices for minimizing the negative impacts of forest conversion to rubber and oil palm plantations while maintaining production. Compared to forests, the fertilized areas of oil palm plantations had higher leaching of N, organic C, and base cations, whereas the unfertilized rubber plantations showed lower leaching of dissolved P and organic C. These signaled a decrease in extant soil fertility and groundwater quality.
Laura Maritza Cardenas, Roland Bol, Dominika Lewicka-Szczebak, Andrew Stuart Gregory, Graham Peter Matthews, William Richard Whalley, Thomas Henry Misselbrook, David Scholefield, and Reinhard Well
Biogeosciences, 14, 4691–4710, https://doi.org/10.5194/bg-14-4691-2017, https://doi.org/10.5194/bg-14-4691-2017, 2017
Short summary
Short summary
A laboratory incubation was carried out at different soil moisture levels to measure emissions of nitrogen gases and the isotopomers (position of 15N) of nitrous oxide. Flux variability was larger in drier conditions, probably due to nutrient distribution heterogeneity created from soil cracks and consequently nutrient hot spots. Denitrification was the main source of fluxes at higher moisture, but nitrification could have occurred under drier conditions (although moisture was still high).
Amanda L. Matson, Marife D. Corre, Kerstin Langs, and Edzo Veldkamp
Biogeosciences, 14, 3509–3524, https://doi.org/10.5194/bg-14-3509-2017, https://doi.org/10.5194/bg-14-3509-2017, 2017
Short summary
Short summary
We present 1 to 2 years of greenhouse gas flux field measurements (CO2, CH4, N2O and NO) in the tropical forest soils of Panama. Fluxes were measured in five sites along the orthogonal gradients of precipitation and fertility. Using these natural gradients, our results highlight the importance of both short-term (climate) and long-term (soil and site characteristics) factors in predicting soil trace gas fluxes and provide information for modeling trace gases under future climate scenarios.
Dominika Lewicka-Szczebak, Jürgen Augustin, Anette Giesemann, and Reinhard Well
Biogeosciences, 14, 711–732, https://doi.org/10.5194/bg-14-711-2017, https://doi.org/10.5194/bg-14-711-2017, 2017
Short summary
Short summary
The consumption of the greenhouse gas nitrous oxide (N2O) by its reduction to dinitrogen via microbial denitrification in soil is poorly quantified. This precludes improvements in nitrogen (N) efficiency in agricultural ecosystems and mitigation of N losses to the environment including N2O fluxes. We present a laboratory evaluation for the determination of N2O reduction based on stable isotope values of soil-emitted N2O as a new approach to determine N2O reduction in the field studies.
Hongxing He, Per-Erik Jansson, Magnus Svensson, Jesper Björklund, Lasse Tarvainen, Leif Klemedtsson, and Åsa Kasimir
Biogeosciences, 13, 2305–2318, https://doi.org/10.5194/bg-13-2305-2016, https://doi.org/10.5194/bg-13-2305-2016, 2016
Short summary
Short summary
We simulate CO2 and N2O dynamics over a full forest rotation on drained agricultural peatland, using CoupModel. Data used for validation include tree ring-derived biomass data (1966–2011) and measured abiotic and soil emission data (2006–2011). The results show that the C fixed in forest biomass is slightly larger than the soil losses over the full rotation period. However when including N2O and indirect emissions from forest thinning products, the forest system switches to a large GHG source.
Dominika Lewicka-Szczebak, Jens Dyckmans, Jan Kaiser, Alina Marca, Jürgen Augustin, and Reinhard Well
Biogeosciences, 13, 1129–1144, https://doi.org/10.5194/bg-13-1129-2016, https://doi.org/10.5194/bg-13-1129-2016, 2016
Short summary
Short summary
Oxygen isotopic signatures of N2O are formed in complex multistep enzymatic reactions and depend on isotopic fractionation during enzymatic reduction of nitrate to N2O and on the oxygen isotope exchange with soil water. We propose a new method for quantification of oxygen isotope exchange, with simultaneous determination of oxygen isotopic signatures, to decipher the mechanism of oxygen isotopic fractionation. We indicate the differences between fractionation mechanisms by various pathways.
W. Eschenbach, R. Well, and W. Walther
Biogeosciences, 12, 2327–2346, https://doi.org/10.5194/bg-12-2327-2015, https://doi.org/10.5194/bg-12-2327-2015, 2015
Related subject area
Biogeochemistry: Greenhouse Gases
Physicochemical perturbation increases nitrous oxide production from denitrification in soils and sediments
Carbon degradation and mobilisation potentials of thawing permafrost peatlands in northern Norway inferred from laboratory incubations
Seasonal dynamics and regional distribution patterns of CO2 and CH4 in the north-eastern Baltic Sea
Interannual and seasonal variability of the air–sea CO2 exchange at Utö in the coastal region of the Baltic Sea
CO2 emissions of drained coastal peatlands in the Netherlands and potential emission reduction by water infiltration systems
Influence of wind strength and direction on diffusive methane fluxes and atmospheric methane concentrations above the North Sea
Using eddy covariance observations to determine the carbon sequestration characteristics of subalpine forests in the Qinghai–Tibet Plateau
Dynamics of CO2 and CH4 fluxes in Red Sea mangrove soils
Isotopomer labeling and oxygen dependence of hybrid nitrous oxide production
The emission of CO from tropical rainforest soils
Drought disrupts atmospheric carbon uptake in a Mediterranean saline lake
Nitrous oxide (N2O) in Macquarie Harbour, Tasmania
Technical note: A low-cost, automatic soil-plant-atmosphere enclosure system to investigate CO2 and ET flux dynamics
Modelling CO2 and N2O emissions from soils in silvopastoral systems of the West African Sahelian band
Ensemble estimates of global wetland methane emissions over 2000–2020
A case study on topsoil removal and rewetting for paludiculture: effect on biogeochemistry and greenhouse gas emissions from Typha latifolia, Typha angustifolia, and Azolla filiculoides
Seasonal carbon fluxes from vegetation and soil in a Mediterranean non-tidal salt marsh
Assessing improvements in global ocean pCO2 machine learning reconstructions with Southern Ocean autonomous sampling
Timescale dependence of airborne fraction and underlying climate–carbon-cycle feedbacks for weak perturbations in CMIP5 models
Technical note: Preventing CO2 overestimation from mercuric or copper(II) chloride preservation of dissolved greenhouse gases in freshwater samples
Exploring temporal and spatial variation of nitrous oxide flux using several years of peatland forest automatic chamber data
Diurnal versus spatial variability of greenhouse gas emissions from an anthropogenically modified lowland river in Germany
Regional assessment and uncertainty analysis of carbon and nitrogen balances at cropland scale using the ecosystem model LandscapeDNDC
Resolving heterogeneous fluxes from tundra halves the growing season carbon budget
Tidal influence on carbon dioxide and methane fluxes from tree stems and soils in mangrove forests
Lawns and meadows in urban green space – a comparison from perspectives of greenhouse gases, drought resilience and plant functional types
Large contribution of soil N2O emission to the global warming potential of a large-scale oil palm plantation despite changing from conventional to reduced management practices
Air temperature and precipitation constraining the modelled wetland methane emissions in a boreal region in Northern Europe
Identifying landscape hot and cold spots of soil greenhouse gas fluxes by combining field measurements and remote sensing data
Explainable machine learning for modelling of net ecosystem exchange in boreal forest
Enhanced Southern Ocean CO2 outgassing as a result of stronger and poleward shifted southern hemispheric westerlies
Spatial and temporal variability of methane emissions and environmental conditions in a hyper-eutrophic fishpond
Optical and radar Earth observation data for upscaling methane emissions linked to permafrost degradation in sub-Arctic peatlands in northern Sweden
Herbivore–shrub interactions influence ecosystem respiration and biogenic volatile organic compound composition in the subarctic
Methane emissions due to reservoir flushing: a significant emission pathway?
Carbon dioxide and methane fluxes from mounds of African fungus-growing termites
Diel and seasonal methane dynamics in the shallow and turbulent Wadden Sea
Technical note: Skirt chamber – an open dynamic method for the rapid and minimally intrusive measurement of greenhouse gas emissions from peatlands
Seasonal variability of nitrous oxide concentrations and emissions in a temperate estuary
Reviews and syntheses: Recent advances in microwave remote sensing in support of terrestrial carbon cycle science in Arctic–boreal regions
Simulated methane emissions from Arctic ponds are highly sensitive to warming
Water-table-driven greenhouse gas emission estimates guide peatland restoration at national scale
Relationships between greenhouse gas production and landscape position during short-term permafrost thaw under anaerobic conditions in the Lena Delta
Carbon emissions and radiative forcings from tundra wildfires in the Yukon–Kuskokwim River Delta, Alaska
Carbon monoxide (CO) cycling in the Fram Strait, Arctic Ocean
Post-flooding disturbance recovery promotes carbon capture in riparian zones
Meteorological responses of carbon dioxide and methane fluxes in the terrestrial and aquatic ecosystems of a subarctic landscape
Carbon emission and export from the Ket River, western Siberia
Evaluation of wetland CH4 in the Joint UK Land Environment Simulator (JULES) land surface model using satellite observations
Greenhouse gas fluxes in mangrove forest soil in an Amazon estuary
Nathaniel B. Weston, Cynthia Troy, Patrick J. Kearns, Jennifer L. Bowen, William Porubsky, Christelle Hyacinthe, Christof Meile, Philippe Van Cappellen, and Samantha B. Joye
Biogeosciences, 21, 4837–4851, https://doi.org/10.5194/bg-21-4837-2024, https://doi.org/10.5194/bg-21-4837-2024, 2024
Short summary
Short summary
Nitrous oxide (N2O) is a potent greenhouse and ozone-depleting gas produced largely from microbial nitrogen cycling processes, and human activities have resulted in increases in atmospheric N2O. We investigate the role of physical and chemical disturbances to soils and sediments in N2O production. We demonstrate that physicochemical perturbation increases N2O production, microbial community adapts over time, and initial perturbation appears to confer resilience to subsequent disturbance.
Sigrid Trier Kjær, Sebastian Westermann, Nora Nedkvitne, and Peter Dörsch
Biogeosciences, 21, 4723–4737, https://doi.org/10.5194/bg-21-4723-2024, https://doi.org/10.5194/bg-21-4723-2024, 2024
Short summary
Short summary
Permafrost peatlands are thawing due to climate change, releasing large quantities of carbon that degrades upon thawing and is released as CO2, CH4 or dissolved organic carbon (DOC). We incubated thawed Norwegian permafrost peat plateaus and thermokarst pond sediment found next to permafrost for up to 350 d to measure carbon loss. CO2 production was initially the highest, whereas CH4 production increased over time. The largest carbon loss was measured at the top of the peat plateau core as DOC.
Silvie Lainela, Erik Jacobs, Stella-Theresa Luik, Gregor Rehder, and Urmas Lips
Biogeosciences, 21, 4495–4519, https://doi.org/10.5194/bg-21-4495-2024, https://doi.org/10.5194/bg-21-4495-2024, 2024
Short summary
Short summary
We evaluate the variability of carbon dioxide and methane in the surface layer of the north-eastern basins of the Baltic Sea in 2018. We show that the shallower coastal areas have considerably higher spatial variability and seasonal amplitude of surface layer pCO2 and cCH4 than measured in the offshore areas of the Baltic Sea. Despite this high variability, caused mostly by coastal physical processes, the average annual air–sea CO2 fluxes differed only marginally between the sub-basins.
Martti Honkanen, Mika Aurela, Juha Hatakka, Lumi Haraguchi, Sami Kielosto, Timo Mäkelä, Jukka Seppälä, Simo-Matti Siiriä, Ken Stenbäck, Juha-Pekka Tuovinen, Pasi Ylöstalo, and Lauri Laakso
Biogeosciences, 21, 4341–4359, https://doi.org/10.5194/bg-21-4341-2024, https://doi.org/10.5194/bg-21-4341-2024, 2024
Short summary
Short summary
The exchange of CO2 between the sea and the atmosphere was studied in the Archipelago Sea, Baltic Sea, in 2017–2021, using an eddy covariance technique. The sea acted as a net source of CO2 with an average yearly emission of 27.1 gC m-2 yr-1, indicating that the marine ecosystem respired carbon that originated elsewhere. The yearly CO2 emission varied between 18.2–39.2 gC m-2 yr-1, mostly due to the yearly variation of ecosystem carbon uptake.
Ralf C. H. Aben, Daniël van de Craats, Jim Boonman, Stijn H. Peeters, Bart Vriend, Coline C. F. Boonman, Ype van der Velde, Gilles Erkens, and Merit van den Berg
Biogeosciences, 21, 4099–4118, https://doi.org/10.5194/bg-21-4099-2024, https://doi.org/10.5194/bg-21-4099-2024, 2024
Short summary
Short summary
Drained peatlands cause high CO2 emissions. We assessed the effectiveness of subsurface water infiltration systems (WISs) in reducing CO2 emissions related to increases in water table depth (WTD) on 12 sites for up to 4 years. Results show WISs markedly reduced emissions by 2.1 t CO2-C ha-1 yr-1. The relationship between the amount of carbon above the WTD and CO2 emission was stronger than the relationship between WTD and emission. Long-term monitoring is crucial for accurate emission estimates.
Ingeborg Bussmann, Eric P. Achterberg, Holger Brix, Nicolas Brüggemann, Götz Flöser, Claudia Schütze, and Philipp Fischer
Biogeosciences, 21, 3819–3838, https://doi.org/10.5194/bg-21-3819-2024, https://doi.org/10.5194/bg-21-3819-2024, 2024
Short summary
Short summary
Methane (CH4) is an important greenhouse gas and contributes to climate warming. However, the input of CH4 from coastal areas to the atmosphere is not well defined. Dissolved and atmospheric CH4 was determined at high spatial resolution in or above the North Sea. The atmospheric CH4 concentration was mainly influenced by wind direction. With our detailed study on the spatial distribution of CH4 fluxes we were able to provide a detailed and more realistic estimation of coastal CH4 fluxes.
Niu Zhu, Jinniu Wang, Dongliang Luo, Xufeng Wang, Cheng Shen, and Ning Wu
Biogeosciences, 21, 3509–3522, https://doi.org/10.5194/bg-21-3509-2024, https://doi.org/10.5194/bg-21-3509-2024, 2024
Short summary
Short summary
Our study delves into the vital role of subalpine forests in the Qinghai–Tibet Plateau as carbon sinks in the context of climate change. Utilizing advanced eddy covariance systems, we uncover their significant carbon sequestration potential, observing distinct seasonal patterns influenced by temperature, humidity, and radiation. Notably, these forests exhibit robust carbon absorption, with potential implications for global carbon balance.
Jessica Ashley Valerie Breavington, Alexandra Steckbauer, Chuancheng Fu, Mongi Ennasri, and Carlos Manuel Duarte
EGUsphere, https://doi.org/10.5194/egusphere-2024-1831, https://doi.org/10.5194/egusphere-2024-1831, 2024
Short summary
Short summary
Mangroves are known for storing large amounts of carbon in their soils, but this is lower in the Red Sea due to challenging growth conditions. We collected soil cores over multiple seasons to measure soil properties, and the greenhouse gasses (GHG) of carbon dioxide and methane. We found that GHG emissions are generally a small offset to carbon storage but punctuated by periods of very high GHG emission and this variability is linked to multiple environmental and soil properties.
Colette L. Kelly, Nicole M. Travis, Pascale Anabelle Baya, Claudia Frey, Xin Sun, Bess B. Ward, and Karen L. Casciotti
Biogeosciences, 21, 3215–3238, https://doi.org/10.5194/bg-21-3215-2024, https://doi.org/10.5194/bg-21-3215-2024, 2024
Short summary
Short summary
Nitrous oxide, a potent greenhouse gas, accumulates in regions of the ocean that are low in dissolved oxygen. We used a novel combination of chemical tracers to determine how nitrous oxide is produced in one of these regions, the eastern tropical North Pacific Ocean. Our experiments showed that the two most important sources of nitrous oxide under low-oxygen conditions are denitrification, an anaerobic process, and a novel “hybrid” process performed by ammonia-oxidizing archaea.
Hella van Asperen, Thorsten Warneke, Alessandro Carioca de Araújo, Bruce Forsberg, Sávio José Filgueiras Ferreira, Thomas Röckmann, Carina van der Veen, Sipko Bulthuis, Leonardo Ramos de Oliveira, Thiago de Lima Xavier, Jailson da Mata, Marta de Oliveira Sá, Paulo Ricardo Teixeira, Julie Andrews de França e Silva, Susan Trumbore, and Justus Notholt
Biogeosciences, 21, 3183–3199, https://doi.org/10.5194/bg-21-3183-2024, https://doi.org/10.5194/bg-21-3183-2024, 2024
Short summary
Short summary
Carbon monoxide (CO) is regarded as an important indirect greenhouse gas. Soils can emit and take up CO, but, until now, uncertainty remains as to which process dominates in tropical rainforests. We present the first soil CO flux measurements from a tropical rainforest. Based on our observations, we report that tropical rainforest soils are a net source of CO. In addition, we show that valley streams and inundated areas are likely additional hot spots of CO in the ecosystem.
Ihab Alfadhel, Ignacio Peralta-Maraver, Isabel Reche, Enrique P. Sánchez-Cañete, Sergio Aranda-Barranco, Eva Rodríguez-Velasco, Andrew S. Kowalski, and Penélope Serrano-Ortiz
EGUsphere, https://doi.org/10.5194/egusphere-2024-1562, https://doi.org/10.5194/egusphere-2024-1562, 2024
Short summary
Short summary
Inland saline lakes are crucial in the global carbon cycle, but increased droughts may alter their carbon exchange capacity. We measured CO2 and CH4 fluxes in a Mediterranean saline lake using the Eddy Covariance method under dry and wet conditions. We found the lake acts as a carbon sink during wet periods but not during droughts. These results highlight the importance of saline lakes in carbon sequestration and their vulnerability to climate change-induced droughts.
Johnathan D. Maxey, Neil D. Hartstein, Hermann W. Bange, and Mortiz Müller
EGUsphere, https://doi.org/10.5194/egusphere-2024-1731, https://doi.org/10.5194/egusphere-2024-1731, 2024
Short summary
Short summary
The distribution of N2O in fjord-like estuaries is poorly described in the southern hemisphere. Our study describes N2O distribution and its drivers in one such system Macquarie Harbour, Tasmania. Water samples were collected seasonally from 2022/2023. Results show the system is a sink for atmospheric N2O when river flow is high; and the system emits N2O when the river flow is low. N2O generated in basins is intercepted by the surface water and exported to the ocean during high river flow.
Wael Al Hamwi, Maren Dubbert, Joerg Schaller, Matthias Lueck, Marten Schmidt, and Mathias Hoffmann
EGUsphere, https://doi.org/10.5194/egusphere-2024-1806, https://doi.org/10.5194/egusphere-2024-1806, 2024
Short summary
Short summary
We present a fully automatic, low-cost soil-plant enclosure system to monitor CO2 and ET fluxes within greenhouse experiments. It operates in two modes: independent, using low-cost sensors, and dependent, connecting multiple chambers to a single gas analyzer via a low-cost multiplexer. This system offers precise and accurate measurements, cost and labor efficiency, and high temporal resolution, enabling comprehensive monitoring of plant-soil responses to various treatments and conditions.
Yélognissè Agbohessou, Claire Delon, Manuela Grippa, Eric Mougin, Daouda Ngom, Espoir Koudjo Gaglo, Ousmane Ndiaye, Paulo Salgado, and Olivier Roupsard
Biogeosciences, 21, 2811–2837, https://doi.org/10.5194/bg-21-2811-2024, https://doi.org/10.5194/bg-21-2811-2024, 2024
Short summary
Short summary
Emissions of greenhouse gases in the Sahel are not well represented because they are considered weak compared to the rest of the world. However, natural areas in the Sahel emit carbon dioxide and nitrous oxides, which need to be assessed because of extended surfaces. We propose an assessment of such emissions in Sahelian silvopastoral systems and of how they are influenced by environmental characteristics. These results are essential to inform climate change strategies in the region.
Zhen Zhang, Benjamin Poulter, Joe R. Melton, William J. Riley, George H. Allen, David J. Beerling, Philippe Bousquet, Josep G. Canadell, Etienne Fluet-Chouinard, Philippe Ciais, Nicola Gedney, Peter O. Hopcroft, Akihiko Ito, Robert B. Jackson, Atul K. Jain, Katherine Jensen, Fortunat Joos, Thomas Kleinen, Sara Knox, Tingting Li, Xin Li, Xiangyu Liu, Kyle McDonald, Gavin McNicol, Paul A. Miller, Jurek Müller, Prabir K. Patra, Changhui Peng, Shushi Peng, Zhangcai Qin, Ryan M. Riggs, Marielle Saunois, Qing Sun, Hanqin Tian, Xiaoming Xu, Yuanzhi Yao, Xi Yi, Wenxin Zhang, Qing Zhu, Qiuan Zhu, and Qianlai Zhuang
EGUsphere, https://doi.org/10.5194/egusphere-2024-1584, https://doi.org/10.5194/egusphere-2024-1584, 2024
Short summary
Short summary
This study assesses global methane emissions from wetlands between 2000 and 2020 using multiple models. We found that wetland emissions increased by 6–7 Tg CH4 per year in the 2010s compared to the 2000s. Rising temperatures primarily drove this increase, while changes in precipitation and CO2 levels also played roles. Our findings highlight the importance of wetlands in the global methane budget and the need for continuous monitoring to understand their impact on climate change.
Merit van den Berg, Thomas M. Gremmen, Renske J. E. Vroom, Jacobus van Huissteden, Jim Boonman, Corine J. A. van Huissteden, Ype van der Velde, Alfons J. P. Smolders, and Bas P. van de Riet
Biogeosciences, 21, 2669–2690, https://doi.org/10.5194/bg-21-2669-2024, https://doi.org/10.5194/bg-21-2669-2024, 2024
Short summary
Short summary
Drained peatlands emit 3 % of the global greenhouse gas emissions. Paludiculture is a way to reduce CO2 emissions while at the same time generating an income for landowners. The side effect is the potentially high methane emissions. We found very high methane emissions for broadleaf cattail compared with narrowleaf cattail and water fern. The rewetting was, however, effective to stop CO2 emissions for all species. The highest potential to reduce greenhouse gas emissions had narrowleaf cattail.
Lorena Carrasco-Barea, Dolors Verdaguer, Maria Gispert, Xavier D. Quintana, Hélène Bourhis, and Laura Llorens
EGUsphere, https://doi.org/10.5194/egusphere-2024-1320, https://doi.org/10.5194/egusphere-2024-1320, 2024
Short summary
Short summary
Carbon dioxide fluxes have been measured seasonally in four plant species in a Mediterranean non-tidal salt marsh highlighting the high carbon removal potential that these species have. Carbon dioxide and methane emissions from soil showed high variability among the habitats studied and they were generally higher than those observed in tidal salt marshes. Our results are important to make more accurate predictions regarding carbon emissions from these ecosystems.
Thea H. Heimdal, Galen A. McKinley, Adrienne J. Sutton, Amanda R. Fay, and Lucas Gloege
Biogeosciences, 21, 2159–2176, https://doi.org/10.5194/bg-21-2159-2024, https://doi.org/10.5194/bg-21-2159-2024, 2024
Short summary
Short summary
Measurements of ocean carbon are limited in time and space. Machine learning algorithms are therefore used to reconstruct ocean carbon where observations do not exist. Improving these reconstructions is important in order to accurately estimate how much carbon the ocean absorbs from the atmosphere. In this study, we find that a small addition of observations from the Southern Ocean, obtained by autonomous sampling platforms, could significantly improve the reconstructions.
Guilherme L. Torres Mendonça, Julia Pongratz, and Christian H. Reick
Biogeosciences, 21, 1923–1960, https://doi.org/10.5194/bg-21-1923-2024, https://doi.org/10.5194/bg-21-1923-2024, 2024
Short summary
Short summary
We study the timescale dependence of airborne fraction and underlying feedbacks by a theory of the climate–carbon system. Using simulations we show the predictive power of this theory and find that (1) this fraction generally decreases for increasing timescales and (2) at all timescales the total feedback is negative and the model spread in a single feedback causes the spread in the airborne fraction. Our study indicates that those are properties of the system, independently of the scenario.
François Clayer, Jan Erik Thrane, Kuria Ndungu, Andrew King, Peter Dörsch, and Thomas Rohrlack
Biogeosciences, 21, 1903–1921, https://doi.org/10.5194/bg-21-1903-2024, https://doi.org/10.5194/bg-21-1903-2024, 2024
Short summary
Short summary
Determination of dissolved greenhouse gas (GHG) in freshwater allows us to estimate GHG fluxes. Mercuric chloride (HgCl2) is used to preserve water samples prior to GHG analysis despite its environmental and health impacts and interferences with water chemistry in freshwater. Here, we tested the effects of HgCl2, two substitutes and storage time on GHG in water from two boreal lakes. Preservation with HgCl2 caused overestimation of CO2 concentration with consequences for GHG flux estimation.
Helena Rautakoski, Mika Korkiakoski, Jarmo Mäkelä, Markku Koskinen, Kari Minkkinen, Mika Aurela, Paavo Ojanen, and Annalea Lohila
Biogeosciences, 21, 1867–1886, https://doi.org/10.5194/bg-21-1867-2024, https://doi.org/10.5194/bg-21-1867-2024, 2024
Short summary
Short summary
Current and future nitrous oxide (N2O) emissions are difficult to estimate due to their high variability in space and time. Several years of N2O fluxes from drained boreal peatland forest indicate high importance of summer precipitation, winter temperature, and snow conditions in controlling annual N2O emissions. The results indicate increasing year-to-year variation in N2O emissions in changing climate with more extreme seasonal weather conditions.
Matthias Koschorreck, Norbert Kamjunke, Uta Koedel, Michael Rode, Claudia Schuetze, and Ingeborg Bussmann
Biogeosciences, 21, 1613–1628, https://doi.org/10.5194/bg-21-1613-2024, https://doi.org/10.5194/bg-21-1613-2024, 2024
Short summary
Short summary
We measured the emission of carbon dioxide (CO2) and methane (CH4) from different sites at the river Elbe in Germany over 3 days to find out what is more important for quantification: small-scale spatial variability or diurnal temporal variability. We found that CO2 emissions were very different between day and night, while CH4 emissions were more different between sites. Dried out river sediments contributed to CO2 emissions, while the side areas of the river were important CH4 sources.
Odysseas Sifounakis, Edwin Haas, Klaus Butterbach-Bahl, and Maria P. Papadopoulou
Biogeosciences, 21, 1563–1581, https://doi.org/10.5194/bg-21-1563-2024, https://doi.org/10.5194/bg-21-1563-2024, 2024
Short summary
Short summary
We performed a full assessment of the carbon and nitrogen cycles of a cropland ecosystem. An uncertainty analysis and quantification of all carbon and nitrogen fluxes were deployed. The inventory simulations include greenhouse gas emissions of N2O, NH3 volatilization and NO3 leaching from arable land cultivation in Greece. The inventory also reports changes in soil organic carbon and nitrogen stocks in arable soils.
Sarah M. Ludwig, Luke Schiferl, Jacqueline Hung, Susan M. Natali, and Roisin Commane
Biogeosciences, 21, 1301–1321, https://doi.org/10.5194/bg-21-1301-2024, https://doi.org/10.5194/bg-21-1301-2024, 2024
Short summary
Short summary
Landscapes are often assumed to be homogeneous when using eddy covariance fluxes, which can lead to biases when calculating carbon budgets. In this study we report eddy covariance carbon fluxes from heterogeneous tundra. We used the footprints of each flux observation to unmix the fluxes coming from components of the landscape. We identified and quantified hot spots of carbon emissions in the landscape. Accurately scaling with landscape heterogeneity yielded half as much regional carbon uptake.
Zhao-Jun Yong, Wei‐Jen Lin, Chiao-Wen Lin, and Hsing-Juh Lin Lin
EGUsphere, https://doi.org/10.5194/egusphere-2024-533, https://doi.org/10.5194/egusphere-2024-533, 2024
Short summary
Short summary
This study is the first to simultaneously measure mangrove CH4 emissions from both stems and soils throughout tidal cycles. The stems served as both net CO2 and CH4 sources. Compared to those of the soils, the stems exhibited markedly lower CH4 emissions, but no difference in CO2 emissions. Sampling only during low tides might overestimate the stem CO2 and CH4 emissions on a diurnal scale. This study also highlights species distinctness (with pneumatophores) in the emissions.
Justine Trémeau, Beñat Olascoaga, Leif Backman, Esko Karvinen, Henriikka Vekuri, and Liisa Kulmala
Biogeosciences, 21, 949–972, https://doi.org/10.5194/bg-21-949-2024, https://doi.org/10.5194/bg-21-949-2024, 2024
Short summary
Short summary
We studied urban lawns and meadows in the Helsinki metropolitan area, Finland. We found that meadows are more resistant to drought events but that they do not increase carbon sequestration compared with lawns. Moreover, the transformation from lawns to meadows did not demonstrate any negative climate effects in terms of greenhouse gas emissions. Even though social and economic aspects also steer urban development, these results can guide planning to consider carbon-smart options.
Guantao Chen, Edzo Veldkamp, Muhammad Damris, Bambang Irawan, Aiyen Tjoa, and Marife D. Corre
Biogeosciences, 21, 513–529, https://doi.org/10.5194/bg-21-513-2024, https://doi.org/10.5194/bg-21-513-2024, 2024
Short summary
Short summary
We established an oil palm management experiment in a large-scale oil palm plantation in Jambi, Indonesia. We recorded oil palm fruit yield and measured soil CO2, N2O, and CH4 fluxes. After 4 years of treatment, compared with conventional fertilization with herbicide weeding, reduced fertilization with mechanical weeding did not reduce yield and soil greenhouse gas emissions, which highlights the legacy effects of over a decade of conventional management prior to the start of the experiment.
Tuula Aalto, Aki Tsuruta, Jarmo Mäkelä, Jurek Mueller, Maria Tenkanen, Eleanor Burke, Sarah Chadburn, Yao Gao, Vilma Mannisenaho, Thomas Kleinen, Hanna Lee, Antti Leppänen, Tiina Markkanen, Stefano Materia, Paul Miller, Daniele Peano, Olli Peltola, Benjamin Poulter, Maarit Raivonen, Marielle Saunois, David Wårlind, and Sönke Zaehle
EGUsphere, https://doi.org/10.5194/egusphere-2023-2873, https://doi.org/10.5194/egusphere-2023-2873, 2024
Short summary
Short summary
Wetland methane responses to temperature and precipitation were studied in a boreal wetland-rich region in Northern Europe using ecosystem models, atmospheric inversions and up-scaled flux observations. The ecosystem models differed in their responses to temperature and precipitation and in their seasonality. However, multi-model means, inversions and up-scaled fluxes had similar seasonality, and they suggested co-limitation by temperature and precipitation.
Elizabeth Gachibu Wangari, Ricky Mwangada Mwanake, Tobias Houska, David Kraus, Gretchen Maria Gettel, Ralf Kiese, Lutz Breuer, and Klaus Butterbach-Bahl
Biogeosciences, 20, 5029–5067, https://doi.org/10.5194/bg-20-5029-2023, https://doi.org/10.5194/bg-20-5029-2023, 2023
Short summary
Short summary
Agricultural landscapes act as sinks or sources of the greenhouse gases (GHGs) CO2, CH4, or N2O. Various physicochemical and biological processes control the fluxes of these GHGs between ecosystems and the atmosphere. Therefore, fluxes depend on environmental conditions such as soil moisture, soil temperature, or soil parameters, which result in large spatial and temporal variations of GHG fluxes. Here, we describe an example of how this variation may be studied and analyzed.
Ekaterina Ezhova, Topi Laanti, Anna Lintunen, Pasi Kolari, Tuomo Nieminen, Ivan Mammarella, Keijo Heljanko, and Markku Kulmala
EGUsphere, https://doi.org/10.5194/egusphere-2023-2559, https://doi.org/10.5194/egusphere-2023-2559, 2023
Short summary
Short summary
ML models are gaining popularity in biogeosciences. They are applied as gapfilling methods and used to upscale carbon fluxes to larger areas based on local measurements. In this study, we use Explainable ML methods to elucidate performance of machine learning models for carbon dioxide fluxes in boreal forest. We show that statistically equal models treat input variables differently. Explainable ML can help scientists to make informed solutions when applying ML models in their research.
Laurie C. Menviel, Paul Spence, Andrew E. Kiss, Matthew A. Chamberlain, Hakase Hayashida, Matthew H. England, and Darryn Waugh
Biogeosciences, 20, 4413–4431, https://doi.org/10.5194/bg-20-4413-2023, https://doi.org/10.5194/bg-20-4413-2023, 2023
Short summary
Short summary
As the ocean absorbs 25% of the anthropogenic emissions of carbon, it is important to understand the impact of climate change on the flux of carbon between the ocean and the atmosphere. Here, we use a very high-resolution ocean, sea-ice, carbon cycle model to show that the capability of the Southern Ocean to uptake CO2 has decreased over the last 40 years due to a strengthening and poleward shift of the southern hemispheric westerlies. This trend is expected to continue over the coming century.
Petr Znachor, Jiří Nedoma, Vojtech Kolar, and Anna Matoušů
Biogeosciences, 20, 4273–4288, https://doi.org/10.5194/bg-20-4273-2023, https://doi.org/10.5194/bg-20-4273-2023, 2023
Short summary
Short summary
We conducted intensive spatial sampling of the hypertrophic fishpond to better understand the spatial dynamics of methane fluxes and environmental heterogeneity in fishponds. The diffusive fluxes of methane accounted for only a minor fraction of the total fluxes and both varied pronouncedly within the pond and over the studied summer season. This could be explained only by the water depth. Wind substantially affected temperature, oxygen and chlorophyll a distribution in the pond.
Sofie Sjögersten, Martha Ledger, Matthias Siewert, Betsabé de la Barreda-Bautista, Andrew Sowter, David Gee, Giles Foody, and Doreen S. Boyd
Biogeosciences, 20, 4221–4239, https://doi.org/10.5194/bg-20-4221-2023, https://doi.org/10.5194/bg-20-4221-2023, 2023
Short summary
Short summary
Permafrost thaw in Arctic regions is increasing methane emissions, but quantification is difficult given the large and remote areas impacted. We show that UAV data together with satellite data can be used to extrapolate emissions across the wider landscape as well as detect areas at risk of higher emissions. A transition of currently degrading areas to fen type vegetation can increase emission by several orders of magnitude, highlighting the importance of quantifying areas at risk.
Cole G. Brachmann, Tage Vowles, Riikka Rinnan, Mats P. Björkman, Anna Ekberg, and Robert G. Björk
Biogeosciences, 20, 4069–4086, https://doi.org/10.5194/bg-20-4069-2023, https://doi.org/10.5194/bg-20-4069-2023, 2023
Short summary
Short summary
Herbivores change plant communities through grazing, altering the amount of CO2 and plant-specific chemicals (termed VOCs) emitted. We tested this effect by excluding herbivores and studying the CO2 and VOC emissions. Herbivores reduced CO2 emissions from a meadow community and altered VOC composition; however, community type had the strongest effect on the amount of CO2 and VOCs released. Herbivores can mediate greenhouse gas emissions, but the effect is marginal and community dependent.
Ole Lessmann, Jorge Encinas Fernández, Karla Martínez-Cruz, and Frank Peeters
Biogeosciences, 20, 4057–4068, https://doi.org/10.5194/bg-20-4057-2023, https://doi.org/10.5194/bg-20-4057-2023, 2023
Short summary
Short summary
Based on a large dataset of seasonally resolved methane (CH4) pore water concentrations in a reservoir's sediment, we assess the significance of CH4 emissions due to reservoir flushing. In the studied reservoir, CH4 emissions caused by one flushing operation can represent 7 %–14 % of the annual CH4 emissions and depend on the timing of the flushing operation. In reservoirs with high sediment loadings, regular flushing may substantially contribute to the overall CH4 emissions.
Matti Räsänen, Risto Vesala, Petri Rönnholm, Laura Arppe, Petra Manninen, Markus Jylhä, Jouko Rikkinen, Petri Pellikka, and Janne Rinne
Biogeosciences, 20, 4029–4042, https://doi.org/10.5194/bg-20-4029-2023, https://doi.org/10.5194/bg-20-4029-2023, 2023
Short summary
Short summary
Fungus-growing termites recycle large parts of dead plant material in African savannas and are significant sources of greenhouse gases. We measured CO2 and CH4 fluxes from their mounds and surrounding soils in open and closed habitats. The fluxes scale with mound volume. The results show that emissions from mounds of fungus-growing termites are more stable than those from other termites. The soil fluxes around the mound are affected by the termite colonies at up to 2 m distance from the mound.
Tim René de Groot, Anne Margriet Mol, Katherine Mesdag, Pierre Ramond, Rachel Ndhlovu, Julia Catherine Engelmann, Thomas Röckmann, and Helge Niemann
Biogeosciences, 20, 3857–3872, https://doi.org/10.5194/bg-20-3857-2023, https://doi.org/10.5194/bg-20-3857-2023, 2023
Short summary
Short summary
This study investigates methane dynamics in the Wadden Sea. Our measurements revealed distinct variations triggered by seasonality and tidal forcing. The methane budget was higher in warmer seasons but surprisingly high in colder seasons. Methane dynamics were amplified during low tides, flushing the majority of methane into the North Sea or releasing it to the atmosphere. Methanotrophic activity was also elevated during low tide but mitigated only a small fraction of the methane efflux.
Frederic Thalasso, Brenda Riquelme, Andrés Gómez, Roy Mackenzie, Francisco Javier Aguirre, Jorge Hoyos-Santillan, Ricardo Rozzi, and Armando Sepulveda-Jauregui
Biogeosciences, 20, 3737–3749, https://doi.org/10.5194/bg-20-3737-2023, https://doi.org/10.5194/bg-20-3737-2023, 2023
Short summary
Short summary
A robust skirt-chamber design to capture and quantify greenhouse gas emissions from peatlands is presented. Compared to standard methods, this design improves the spatial resolution of field studies in remote locations while minimizing intrusion.
Gesa Schulz, Tina Sanders, Yoana G. Voynova, Hermann W. Bange, and Kirstin Dähnke
Biogeosciences, 20, 3229–3247, https://doi.org/10.5194/bg-20-3229-2023, https://doi.org/10.5194/bg-20-3229-2023, 2023
Short summary
Short summary
Nitrous oxide (N2O) is an important greenhouse gas. However, N2O emissions from estuaries underlie significant uncertainties due to limited data availability and high spatiotemporal variability. We found the Elbe Estuary (Germany) to be a year-round source of N2O, with the highest emissions in winter along with high nitrogen loads. However, in spring and summer, N2O emissions did not decrease alongside lower nitrogen loads because organic matter fueled in situ N2O production along the estuary.
Alex Mavrovic, Oliver Sonnentag, Juha Lemmetyinen, Jennifer L. Baltzer, Christophe Kinnard, and Alexandre Roy
Biogeosciences, 20, 2941–2970, https://doi.org/10.5194/bg-20-2941-2023, https://doi.org/10.5194/bg-20-2941-2023, 2023
Short summary
Short summary
This review supports the integration of microwave spaceborne information into carbon cycle science for Arctic–boreal regions. The microwave data record spans multiple decades with frequent global observations of soil moisture and temperature, surface freeze–thaw cycles, vegetation water storage, snowpack properties, and land cover. This record holds substantial unexploited potential to better understand carbon cycle processes.
Zoé Rehder, Thomas Kleinen, Lars Kutzbach, Victor Stepanenko, Moritz Langer, and Victor Brovkin
Biogeosciences, 20, 2837–2855, https://doi.org/10.5194/bg-20-2837-2023, https://doi.org/10.5194/bg-20-2837-2023, 2023
Short summary
Short summary
We use a new model to investigate how methane emissions from Arctic ponds change with warming. We find that emissions increase substantially. Under annual temperatures 5 °C above present temperatures, pond methane emissions are more than 3 times higher than now. Most of this increase is caused by an increase in plant productivity as plants provide the substrate microbes used to produce methane. We conclude that vegetation changes need to be included in predictions of pond methane emissions.
Julian Koch, Lars Elsgaard, Mogens H. Greve, Steen Gyldenkærne, Cecilie Hermansen, Gregor Levin, Shubiao Wu, and Simon Stisen
Biogeosciences, 20, 2387–2403, https://doi.org/10.5194/bg-20-2387-2023, https://doi.org/10.5194/bg-20-2387-2023, 2023
Short summary
Short summary
Utilizing peatlands for agriculture leads to large emissions of greenhouse gases worldwide. The emissions are triggered by lowering the water table, which is a necessary step in order to make peatlands arable. Many countries aim at reducing their emissions by restoring peatlands, which can be achieved by stopping agricultural activities and thereby raising the water table. We estimate a total emission of 2.6 Mt CO2-eq for organic-rich peatlands in Denmark and a potential reduction of 77 %.
Mélissa Laurent, Matthias Fuchs, Tanja Herbst, Alexandra Runge, Susanne Liebner, and Claire C. Treat
Biogeosciences, 20, 2049–2064, https://doi.org/10.5194/bg-20-2049-2023, https://doi.org/10.5194/bg-20-2049-2023, 2023
Short summary
Short summary
In this study we investigated the effect of different parameters (temperature, landscape position) on the production of greenhouse gases during a 1-year permafrost thaw experiment. For very similar carbon and nitrogen contents, our results show a strong heterogeneity in CH4 production, as well as in microbial abundance. According to our study, these differences are mainly due to the landscape position and the hydrological conditions established as a result of the topography.
Michael Moubarak, Seeta Sistla, Stefano Potter, Susan M. Natali, and Brendan M. Rogers
Biogeosciences, 20, 1537–1557, https://doi.org/10.5194/bg-20-1537-2023, https://doi.org/10.5194/bg-20-1537-2023, 2023
Short summary
Short summary
Tundra wildfires are increasing in frequency and severity with climate change. We show using a combination of field measurements and computational modeling that tundra wildfires result in a positive feedback to climate change by emitting significant amounts of long-lived greenhouse gasses. With these effects, attention to tundra fires is necessary for mitigating climate change.
Hanna I. Campen, Damian L. Arévalo-Martínez, and Hermann W. Bange
Biogeosciences, 20, 1371–1379, https://doi.org/10.5194/bg-20-1371-2023, https://doi.org/10.5194/bg-20-1371-2023, 2023
Short summary
Short summary
Carbon monoxide (CO) is a climate-relevant trace gas emitted from the ocean. However, oceanic CO cycling is understudied. Results from incubation experiments conducted in the Fram Strait (Arctic Ocean) indicated that (i) pH did not affect CO cycling and (ii) enhanced CO production and consumption were positively correlated with coloured dissolved organic matter and nitrate concentrations. This suggests microbial CO uptake to be the driving factor for CO cycling in the Arctic Ocean.
Yihong Zhu, Ruihua Liu, Huai Zhang, Shaoda Liu, Zhengfeng Zhang, Fei-Hai Yu, and Timothy G. Gregoire
Biogeosciences, 20, 1357–1370, https://doi.org/10.5194/bg-20-1357-2023, https://doi.org/10.5194/bg-20-1357-2023, 2023
Short summary
Short summary
With global warming, the risk of flooding is rising, but the response of the carbon cycle of aquatic and associated riparian systems
to flooding is still unclear. Based on the data collected in the Lijiang, we found that flooding would lead to significant carbon emissions of fluvial areas and riparian areas during flooding, but carbon capture may happen after flooding. In the riparian areas, the surviving vegetation, especially clonal plants, played a vital role in this transformation.
Lauri Heiskanen, Juha-Pekka Tuovinen, Henriikka Vekuri, Aleksi Räsänen, Tarmo Virtanen, Sari Juutinen, Annalea Lohila, Juha Mikola, and Mika Aurela
Biogeosciences, 20, 545–572, https://doi.org/10.5194/bg-20-545-2023, https://doi.org/10.5194/bg-20-545-2023, 2023
Short summary
Short summary
We measured and modelled the CO2 and CH4 fluxes of the terrestrial and aquatic ecosystems of the subarctic landscape for 2 years. The landscape was an annual CO2 sink and a CH4 source. The forest had the largest contribution to the landscape-level CO2 sink and the peatland to the CH4 emissions. The lakes released 24 % of the annual net C uptake of the landscape back to the atmosphere. The C fluxes were affected most by the rainy peak growing season of 2017 and the drought event in July 2018.
Artem G. Lim, Ivan V. Krickov, Sergey N. Vorobyev, Mikhail A. Korets, Sergey Kopysov, Liudmila S. Shirokova, Jan Karlsson, and Oleg S. Pokrovsky
Biogeosciences, 19, 5859–5877, https://doi.org/10.5194/bg-19-5859-2022, https://doi.org/10.5194/bg-19-5859-2022, 2022
Short summary
Short summary
In order to quantify C transport and emission and main environmental factors controlling the C cycle in Siberian rivers, we investigated the largest tributary of the Ob River, the Ket River basin, by measuring spatial and seasonal variations in carbon CO2 and CH4 concentrations and emissions together with hydrochemical analyses. The obtained results are useful for large-scale modeling of C emission and export fluxes from permafrost-free boreal rivers of an underrepresented region of the world.
Robert J. Parker, Chris Wilson, Edward Comyn-Platt, Garry Hayman, Toby R. Marthews, A. Anthony Bloom, Mark F. Lunt, Nicola Gedney, Simon J. Dadson, Joe McNorton, Neil Humpage, Hartmut Boesch, Martyn P. Chipperfield, Paul I. Palmer, and Dai Yamazaki
Biogeosciences, 19, 5779–5805, https://doi.org/10.5194/bg-19-5779-2022, https://doi.org/10.5194/bg-19-5779-2022, 2022
Short summary
Short summary
Wetlands are the largest natural source of methane, one of the most important climate gases. The JULES land surface model simulates these emissions. We use satellite data to evaluate how well JULES reproduces the methane seasonal cycle over different tropical wetlands. It performs well for most regions; however, it struggles for some African wetlands influenced heavily by river flooding. We explain the reasons for these deficiencies and highlight how future development will improve these areas.
Saúl Edgardo Martínez Castellón, José Henrique Cattanio, José Francisco Berrêdo, Marcelo Rollnic, Maria de Lourdes Ruivo, and Carlos Noriega
Biogeosciences, 19, 5483–5497, https://doi.org/10.5194/bg-19-5483-2022, https://doi.org/10.5194/bg-19-5483-2022, 2022
Short summary
Short summary
We seek to understand the influence of climatic seasonality and microtopography on CO2 and CH4 fluxes in an Amazonian mangrove. Topography and seasonality had a contrasting influence when comparing the two gas fluxes: CO2 fluxes were greater in high topography in the dry period, and CH4 fluxes were greater in the rainy season in low topography. Only CO2 fluxes were correlated with soil organic matter, the proportion of carbon and nitrogen, and redox potential.
Cited articles
Abdalla, M., Kumar, S., Jones, M., Burke, J., and Williams, M.:
Testing DNDC model for simulating soil respiration and assessing the effects of climate change on the CO2 gas flux from Irish agriculture,
Global Planet. Change,
78, 106–115, 2011.
Bijay-Singh, J. C., Ryden, A., and Whitehead, D. C.:
Some relationships between denitrification potential and fractions of organic carbon in air-dried and filed-most soils,
Soil Biol. Biochem.,
20, 737–741, 1988.
Bollmann, A. and Conrad, R.:
Acetylene blockage technique leads to underestimation of denitrification rates in oxic soils due to scavenging of intermediate nitric oxide,
Soil Biol. Biochem.,
29, 1067–1077, 1997.
Böttcher, J., Springob, G., and Duijnisveld, W. H. M.:
Sandige Böden und deren Wasser- und Stoffhaushalt unter Acker und Nadelwald im Fuhrherger Feld,
Mitteilungen der Deutschen bodenkundlichen Gesellschaft,
Exkursionsfrüher, 90, 405–425, 1999.
Brilli, L., Bechini, L., Bindi, M., Carozzi, M., Cavalli, D., Conant, R., Dorich, C. D., Doro, L., Ehrhardt, F., Farina, R., Ferrise, R., Fitton, N., Francaviglia, R., Grace, P., Iocola, I., Klumpp, K., Léonard, J., Martin, R., Massad, R.S, Recous, S., Seddaiu, G., Sharp, J., Smith, P., Smith, W. N., Soussana, J. F., and Bellocchi, G. L.:
Review and analysis of strengths and weaknesses of agro ecosystem models in representing C and N fluxes,
Sci. Total Environ.,
598, 445–470, 2017.
Buchen, C., Lewicka-Szczebak, D., Fuß, R., Helfrich, M., Flessa, H., and Well, R.:
Fluxes of N2 and N2O and contributing processes in summer after grassland renewal and grassland conversion to maize cropping on a Plaggic Anthrosol and a Histic Gleysol,
Soil Biol. Biochem.,
101, 6–19, https://doi.org/10.1016/j.soilbio.2016.06.028, 2016.
Burford, J. R. and Bremner, J. M.:
Relationships between the denitrification capacities of soils and total, water soluble, and readily decomposable soil organic matter,
Soil Biol. Biochem.,
19, 377–380, 1975.
Butterbach-Bahl, K., Baggs, E. M., Dannenmann, M., Kiese, R., and Zechmeister-Boltenstern, S.:
Nitrous oxide emissions from soils: how well do we understand the processes and their controls?,
Philos. T. Roy. Soc. B,
368, 20130122, https://doi.org/10.1098/rstb.2013.0122, 2013.
Cantazaro, J. B. D. and Beauchamp, E. G.:
The effect of some carbon substrates on denitrification rates and carbon utilization in soil,
Biol. Fert. Soils,
1, 183–187, 1985.
Cardenas, M. B. and Zlotnik. V. A.:
Three-dimensional model of modern channel bend deposits,
Water Resour. Res.,
39, 1141, https://doi.org/10.1029/2002WR001383, 2003.
Chen, D., Li, Y., Grace, P., and Mosier, A.:
N2O emissions from agricultural lands: a synthesis of simulation approaches,
Plant Soil,
309, 169–189, 2008.
Congreves, K. A., Grant, B. B., Dutta, B., Smith, W. N., Chantigny, M. H., Rochette, P., and Desjardins, R. L.:
Predicting ammonia volatilization from swine slurry application using DNDC: model development,
Agr. Ecosyst. Environ.,
219, 179–189, 2016.
Conrad, Y. and Fohrer, N.: Application of the Bayesian calibration methodology for the parameter estimation in CoupModel, Adv. Geosci., 21, 13–24, https://doi.org/10.5194/adgeo-21-13-2009, 2009.
Cui, F., Zheng, X., Liu, C., Wang, K., Zhou, Z., and Deng, J.: Assessing biogeochemical effects and best management practice for a wheat–maize cropping system using the DNDC model, Biogeosciences, 11, 91–107, https://doi.org/10.5194/bg-11-91-2014, 2014.
Davidson, E. A., Verchot, L. V., Cattanio, H., Ackerman, I. L., and Carvalho, J. E. M.:
Effects of soil water content on soil respiration in forests and cattle pastures of eastern Amazonia,
Biogeochemistry,
48, 53–69, https://doi.org/10.1023/A:1006204113917, 2000.
Deng, J., Zhu, B., Zhou, Z., Zheng, X., Li, C., Wang, T., and Tang, J.:
Modeling nitrogen loadings from agricultural soils in southwest China with modified DNDC,
J. Geophys. Res.-Biogeo.,
116, G02020, https://doi.org/10.1029/2010JG001609, 2011.
DNDC Scientific Basis and Processes:
Version 9.5,
available at: https://www.dndc.sr.unh.edu/papers/DNDC_Scientific_Basis_and_Processes.pdf (last access: 25 January 2021), 2017.
Dutta, B., Smith, W. N., Grant, B. B., Pattey, E., Desjardins, R. L., and Li, C.:
Model development in DNDC for the prediction of evapotranspiration and water use in temperate field cropping systems,
Environ. Modell. Softw.,
80, 9–25, 2016.
Galloway, J. N., Dentener, F. J., Capone, D. G., Boyer, E. W., Howarth, R. W., Seitzinger, S. P., Asner, G. P., Cleveland, C. C., Green, P. A., Holland, E. A., Karl, D. M., Michaels, A. F., Porter, J. H., Townsend, A. R., and Vörösmarty, C. J.:
Nitrogen cycles: past, present, and future,
Biogeochemistry,
70, 153–226, 2004.
Giltrap, D. L., Li, C., and Saggar, S.:
DNDC: a process-based model of greenhouse gas fluxes from agricultural soils,
Agr. Ecosyst. Environ.,
136, 292–300, 2010.
Groffman, P. M. and Tiedje, J. M.:
Denitrification hysteresis during wetting and drying cycles in soil,
Soil Sci. Soc. Am. J.,
52, 1626–1629, 1988.
Groffman, P. M., Altabet, M. A., Böhlke, J. K., Butterbach-Bahl, K., David, M. B., Firestone, M. K., Giblin, A. E., Kana, T. M., Nielsen, L. P., and Voytek, M. A.:
Methods for measuring denitrification: diverse approaches to a difficult problem,
Ecol. Appl.,
16, 2091–2122, 2006.
Groffman, P. M., Butterbach-Bahl, K., Fulweiler, R. W., Gold, A. J., Morse, J. L., Stander, E. K., Tague, C., Tonitto, C., and Vidon, P.:
Challenges to incorporating spatially and temporally explicit phenomena (hotspots and hot moments) in denitrification models,
Biogeochemistry,
93, 49–77, https://doi.org/10.1007/s10533-008-9277-5, 2009.
Grosso, S. J. D., Parton, W. J., Mosier, A. R., Ojima, D. S., Kulmala, A. E., and Phongpan, S.:
General model for N2O and N2 gas emissions from soils due to dentrification,
Global Biogeochem. Cy.,
14, 1045–1060, https://doi.org/10.1029/1999GB001225, 2000.
Grundmann, G. L. and Rolston, D. E.:
A water function approximation to degree of anaerobiosis associated with denitrification,
Soil Sci.,
144, 437–441, 1987.
He, H., Jansson, P.-E., Svensson, M., Meyer, A., Klemedtsson, L., and Kasimir, Å.:
Factors controlling Nitrous Oxide emission from a spruce forest ecosystem on drained organic soil, derived using the CoupModel,
Ecol. Model.,
321, 46–63, https://doi.org/10.1016/j.ecolmodel.2015.10.030, 2016.
He, W., Yang, J., Drury, C., Smith, W., Grant, B., He, P., Qian, B., Zhou, W., and Hoogenboom, G.: Estimating the impacts of climate change on crop yields and N2O emissions for conventional and no-tillage in Southwestern Ontario, Can. Agr. Syst., 159, 187–198, https://doi.org/10.1016/j.agsy.2017.01.025, 2018.
He, W., Grant, B.B, Smith, W. N., VanderZaag, A. C., Piquette, S., Qian, B., Jing, Q., Rennie, T. J., Bélanger, G., Jégo, G., and Deen, B.:
Assessing alfalfa production under historical and future climate in eastern Canada: DNDC development and application,
Environ. Modell. Softw.,
122, 104540, https://doi.org/10.1016/j.envsoft.2019.104540, 2019.
Heinen, M.:
Simplified denitrification models: overview and properties,
Geoderma,
133, 444–463, 2006.
IUSS Working Group WRB:
World Reference Base for Soil Resources 2014, update 2015, International soil classification system for naming soils and creating legends for soil maps, World Soil Resources Reports No. 106,
FAO, Rome, 2015.
Jansson, P.-E. and Moon, D. S.:
A coupled model of water, heat and mass transfer using object orientation to improve flexibility and functionality,
Environ. Modell. Softw.,
16, 37–46, 2001.
Jiang, Z., Yang, S., Ding, J., Sun, X., Chen, X., Liu, X., and Xu, J.:
Modeling Climate Change Effects on Rice Yield and Soil Carbon under Variable Water and Nutrient Management,
Sustainability,
13, 568, https://doi.org/10.3390/su13020568, 2021.
Kemmann, B., Wöhl, L., Fuß, R., Schrader, S., Well, R., and Ruf, T.:
N2 and N2O mitigation potential of replacing maize with the perennial biomass crop Silphium perfoliatum–An incubation study,
GCB Bioenergy,
13, 1649–1665, https://doi.org/10.1111/gcbb.12879, 2021.
Khalil, M. I. and Osborne, B.:
Improving estimates of soil organic carbon (SOC) stocks and their long-term temporal changes in agricultural soils in Ireland,
Geoderma,
322, 172–183, 2018.
Khalil, M. I., Abdalla, M., Lanigan, G., Osborne, B., and Müller, C.:
Evaluation of parametric limitations in simulating greenhouse gas fluxes from Irish arable soils using three process-based models,
Agricultural Sciences,
Special Issue: Agricultural Systems Modelling,
7, 503–520, 2016.
Khalil, M. I., Fornara, D., and Osborne, B.:
Simulation and validation of soil organic carbon density and its changes in a long-term permanent grassland of Ireland,
Geoderma,
361, 114014, https://doi.org/10.1016/j.geoderma.2019, 2019.
Kurbatova, J., Li, C., Tatarinov, F., Varlagin, A., Shalukhina, N., and Olchev, A.:
Modeling of the carbon dioxide fluxes in European Russia peat bogs,
Environ. Res. Lett.,
4, 045022, https://doi.org/10.1088/1748-9326/4/4/045022, 2009.
Kuzyakov, Y.:
Priming effects: Interactions between living and dead organic matter,
Soil Biol. Biochem.,
42, 1363–1371, https://doi.org/10.1016/j.soilbio.2010.04.003, 2010.
Leffelaar, P. A.:
Dynamics of partial anaerobiosis, denitrification, and water in a soil aggregate: simulation,
Soil Sci.,
146, 427–444, 1988.
Leffelaar, P. A. and Wessel, W. W.:
Denitrification in a homogeneous, closed system: experiment and simulation,
Soil Sci.,
146, 335–349, 1988.
Lewicka-Szczebak, D., Well, R., Giesemann, A., Rohe, L., and Wolf, U.:
An enhanced technique for automated determination of 15N signatures of N2, (N2 + N2O) and N2O in gas samples,
Rapid Commun. Mass Sp.,
27, 1548–1558, 2013.
Lewicka-Szczebak, D., Augustin, J., Giesemann, A., and Well, R.: Quantifying N2O reduction to N2 based on N2O isotopocules – validation with independent methods (helium incubation and 15N gas flux method), Biogeosciences, 14, 711–732, https://doi.org/10.5194/bg-14-711-2017, 2017.
Li, C., Frolking, S., and Frolking, T. A.:
A model of nitrous oxide evolution from soil driven by rainfall events: 1. model structure and sensitivity,
J. Geophys. Res.-Atmos.,
97, 9759–9776, 1992.
Li, C., Narayanan, V., and Harriss, R. C.:
Model estimates of nitrous oxide emissions from agricultural lands in the United States,
Global Biogeochem. Cy.,
10, 297–306, 1996.
Li, C. S., Frolking, S., and Harriss, R.:
Modeling carbon biogeochemistry in agricultural soils,
Global Biogeochem. Cy.,
8, 237–254, 1994.
Li, C. S.: Quantifying greenhouse gas emissions from soils: Scientific basis and modeling approach, J. Soil Sci. Plant Nutr., 53, 344–352, https://doi.org/10.1111/j.1747-0765.2007.00133.x, 2007.
McCarty, G. W. and Bremner, J. M.:
Factors affecting the availability of organic carbon for denitrification of nitrate in subsoils,
Biol. Fert. Soils,
15, 132–136, 1993.
Manzoni, S., Taylor, P., Richter, A., Porporato, A., and Ågren. G. I.:
Environmental and stoichiometric controls on microbial carbon-use efficiency in soils,
New Phytol.,
196, 79–91, https://doi.org/10.1111/j.1469-8137.2012.04225.x, 2012.
Merl, S.:
Inkubationsversuch zur Quantifizierung von N2- und N2O-Emissionen aus einem sandigen Ackerboden unter variablem Einfluss von chemischen und physikalischen Kontrollfaktoren der Denitrifikation,
Masterarbeit,
Matrikelnummer: 4065499, Technische Universität Braunschweig, 2018.
Metzger, C., Nilsson, M. B., Peichl, M., and Jansson, P.-E.: Parameter interactions and sensitivity analysis for modelling carbon heat and water fluxes in a natural peatland, using CoupModel v5, Geosci. Model Dev., 9, 4313–4338, https://doi.org/10.5194/gmd-9-4313-2016, 2016.
Müller, C. and Clough, T. J.:
Advances in understanding nitrogen flows and transformations: gaps and research pathways,
J. Agr. Sci.,
152, 34–44, 2014.
Nadeem, S., Dorsch, P., and Bakken, L. R.:
Autoxidation and acetylene-accelerated oxidation of NO in a 2-phase system: Implications for the expression of denitrification in ex situ experiments,
Soil Biol. Biochem.,
57, 606–614, 2013.
Norman, J., Jansson, P-E., Farahbakhshazad, N., Butterbach-Bahl, K., Li, C., and Klemedtsson, L.:
Simulation of NO and N2O emissions from a spruce forest during a freeze/thaw event using an N-flux submodel from the PnET-N-DNDC model integrated to CoupModel,
Ecol. Model.,
216, 18–30, https://doi.org/10.1016/j.ecolmodel.2008.04.012, 2008.
Nylinder, J., Stenberg, M., Jansson, P.-E., Klemedtsson, Å. K., Weslien, P., and Klemedtsson, L.:
Modelling uncertainty for nitrate leaching and nitrous oxide emissions based on a Swedish field experiment with organic crop rotation.
Agr. Ecosyst. Environ.,
141, 167–183, https://doi.org/10.1016/j.agee.2011.02.027, 2011.
Parton, W. J., Mosier, A., Ojima, D. S., Valentine, D., Schimel, D., Weier, K. L., and Kulmala, A. E.:
Generalized model for N2 and N2O production from nitrification and denitrification, Global Biogeochemical Cycles, 10, 401–412, 1996.
Peterjohn, W. T.:
Denitrification: enzyme content and activity in desert soils,
Soil Biol. Biochem.,
23, 845–855, 1991.
Philippot, L., Hallin, S., and Schloter, M.:
Ecology of denitrifying prokaryotes in agricultural soil Advances in Agronomy,
Academic Press, 96, 249–305, https://doi.org/10.1016/S0065-2113(07)96003-4, 2007.
R Core Team:
R: A language and environment for statistical computing,
R Foundation for Statistical Computing, Vienna, Austria,
available at: http://www.R-project.org/ (last access: 21 January 2021), 2013.
Rodrigo, A., Recous, S., Neel, C., and Mary, B.:
Modelling temperature and moisture effects on C–N transformations in soils: comparison of nine models,
Ecol. Model.,
102, 325–339, 1997.
Rohe, L., Apelt, B., Vogel, H.-J., Well, R., Wu, G.-M., and Schlüter, S.: Denitrification in soil as a function of oxygen availability at the microscale, Biogeosciences, 18, 1185–1201, https://doi.org/10.5194/bg-18-1185-2021, 2021.
Säurich, A., Tiemeyer, B., Dettmann, U., and Don, A.:
How do sand addition, soil moisture and nutrient status influence greenhouse gas fluxes from drained organic soils?,
Soil Biol. Biochem.,
135, 71–84, 2019.
Saxton, K. E. and Rawls, W. J.:
Soil Water Characteristic Estimates by Texture and Organic Matter for Hydrologic Solutions,
Soil Sci. Soc. Am. J.,
70, 1569–1578, https://doi.org/10.2136/sssaj2005.0117, 2006.
Scheer, C., Fuchs, K., Pelster, D. E., and Butterbach-Bahl, K.:
Estimating global terrestrial denitrification from measured product ratios,
Curr. Opin. Env. Sust.,
47, 72–80, 2020.
Schlüter, S., Henjes, S., Zawallich, J., Bergaust, L., Horn, M., Ippisch, O., Vogel, H.-J., and Dörsch, P.:
Denitrification in Soil Aggregate Analogues-Effect of Aggregate Size and Oxygen Diffusion,
Front. Environ. Sci.,
6, 17, https://doi.org/10.3389/fenvs.2018.00017, 2018.
Schurgers, G., Dörsch, P., Bakken, L., Leffelaar, P., and Haugen, L. E.:
Modelling soil anaerobiosis from water retention characteristics and soil respiration,
Soil Biol. Biochem.,
38, 2637–2644, 2006.
Senapati, N., Chabbi, A., Giostri, A. F., Yeluripati, J. B., and Smith, P.:
Modelling nitrous oxide emissions from mown-grass and grain-cropping systems: Testing and sensitivity analysis of DailyDayCent using high frequency measurements,
Sci. Total Environ.,
572, 955–977, https://doi.org/10.1016/j.scitotenv.2016.07.226, 2016.
Senbayram, M., Well, R., Bol, R., Chadwick, D. R., Jones, D. L., and Wu, D.:
Interaction of straw amendment and soil content controls fungal denitrification and denitrification product stoichiometry in a sandy soil,
Soil Biol. Biochem.,
126, 204–212, https://doi.org/10.1016/j.soilbio.2018.09.005, 2018.
Senbayram, M., Budai, A., Bol, R., Chadwick, D., Marton, L., Gündogan, R., and Wu, D.:
Soil level and O2 availability are key factors in controlling N2O reduction to N2 following long-term liming of an acidic sandy soil,
Soil Biol. Biochem.,
132, 165–173, 2019.
Sgouridis, F., Stott, A., and Ullah, S.: Application of the 15N gas-flux method for measuring in situ N2 and N2O fluxes due to denitrification in natural and semi-natural terrestrial ecosystems and comparison with the acetylene inhibition technique, Biogeosciences, 13, 1821–1835, https://doi.org/10.5194/bg-13-1821-2016, 2016.
Simek, M. and Cooper, J. E.:
The influence of soil pH on denitrification: progress towards the understanding of this interactionover the last 50 years,
Eur. J. Soil Sci.,
53, 345–354, 2002.
Simek, M. and Hopkins, D. W.:
Regulation of potential denitrification by soil pH in long-term fertilized arable soils,
Biol. Fert. Soils,
30, 41–47, 1999.
Singh, B.:
The Nitrogen Cycle: Implications for Management, Soil Health, and Climate Change, Chapter 6,
in: Soil Health and Climate Change,
edited by: Singh, B., Cowie, A., and Chan, K.,
Springer-Verlag, Berlin Heidelberg, https://doi.org/10.1007/978-3-642-20256-8_6, 2011.
Smith, M. S. and Tiedje, J. M.:
Phases of denitrification following oxygen depletion in soil,
Soil Biol. Biochem.,
11, 261–267, 1979.
Smith, K. A., Ball, T., Conen, F., Dobbie, K. E., Massheder, J., and Rey, A.:
Exchange of greenhouse gases between soil and atmosphere: interactions of soil physical factors and biological processes,
Eur. J. Soil Sci.,
54, 779–791, https://doi.org/10.1046/j.1351-0754.2003.0567.x, 2003.
Smith, W. N., Grant, B. B., Desjardins, R. L., Rochette, P., Drury, C. F., and Li, C.:
Evaluation of two process-based models to estimate soil N2O emissions in Eastern Canada,
Can. J. Soil Sci.,
88, 251–260, 2008.
Smith, W., Qi, Z., Grant, B., VanderZaag, A., and Desjardins, R.:
Comparing hydrological frameworks for simulating crop biomass, water and nitrogen dynamics in a tile drained soybean-corn system: cascade vs computational approach,
J. Hydrol. X,
2, 100015, https://doi.org/10.1016/j.hydroa.2018.100015, 2019.
Tiedje, J. M.:
Denitrification in soil,
in: Microbiology,
edited by: Schlessinger, D.,
American Society of Microbiology, Washington, DC, 362–366, 1978.
Uzoma, K. C., Smith, W. N., Grant, B., Desjardins, R. L., Gao, X., Hanisb, K., Tenutab, M., Goglio, P., and Li, C.:
Assessing the effects of agricultural management on nitrous oxide emissions using flux measurements and the CAN-DNDC model,
Agr. Ecosyst. Environ.,
206, 71–83, 2015.
Van Rossum, G. and Drake, F. L.:
Python 3 Reference Manual,
CreateSpace, Scotts Valley, CA, 2009.
Weier, K. L., Doran, J. W., and Walks, D. T.:
Denitrification and the dinitrogen/nitrous oxide ratio as affected by soil water, available carbon, and nitrate,
Soil Sci. Soc. Am. J.,
57, 66–72, 1993.
Well, R. and Flessa, H.:
Isotopologue signatures of N2O produced by denitrification in soils,
J. Geophys. Res.-Biogeo.,
114, G02020, https://doi.org/10.1029/2008JG000804, 2009.
Well, R., Becke, K.-W., Meyer, B., Langel, R., and Reineking, A.:
Continuous flow equilibration for mass spectrometric analysis of dinitrogen emissions,
Soil Sci. Soc. Am. J.,
62, 906–910, https://doi.org/10.2136/sssaj1998.03615995006200040008x, 1998.
Well, R., Höper, H., Mehranfar, O., and Meyer, K.:
Denitrification in the saturated zone of hydromorphic soils-laboratory measurement, regulating factors and stochastic modeling,
Soil Biol. Biochem.,
37, 1822–1836, 2005.
Well, R., Kurganova, I., de Gerenyu, V. L., and Flessa, H.:
Isotopomer signatures of soil-emitted N2O under different moisture conditions – A microcosm study with arable loess soil,
Soil Biol. Biochem.,
38, 2923–2933, 2006.
Well, R., Maier, M., Lewicka-Szczebak, D., Köster, J.-R., and Ruoss, N.: Underestimation of denitrification rates from field application of the 15N gas flux method and its correction by gas diffusion modelling, Biogeosciences, 16, 2233–2246, https://doi.org/10.5194/bg-16-2233-2019, 2019.
Williams, T. and Kelley, C.:
Gnuplot 5.2: an interactive plotting program,
available at: http://gnuplot.sourceforge.net/docs_5.2/Gnuplot_5.2.pdf (last access: 21 January 2021), 2019.
Zaehle S.:
Terrestrial nitrogen–carbon cycle interactions at the global scale,
Philos. T. Roy. Soc. B,
368, 20130125, https://doi.org/10.1098/rstb.2013.0125, 2013.
Ziehmer, B.:
Laboruntersuchungen zur Denitrifikation in der Ackerkrume einer Löss-Parabraunerde unter Temperatur- und Feuchtebedingungen des Winterhalbjahres,
Bachelorarbeit, Georg-August Universität Göttingen, Fakultät für Agrarwissenschaften, 2006.
Short summary
To assure quality predictions biogeochemical models must be current. We use data measured using novel incubation methods to test the denitrification sub-modules of three models. We aim to identify limitations in the denitrification modeling to inform next steps for development. Several areas are identified, most urgently improved denitrification control parameters and further testing with high-temporal-resolution datasets. Addressing these would significantly improve denitrification modeling.
To assure quality predictions biogeochemical models must be current. We use data measured using...
Altmetrics
Final-revised paper
Preprint