Articles | Volume 11, issue 15
Biogeosciences, 11, 4173–4190, 2014
https://doi.org/10.5194/bg-11-4173-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Special issue: The impact of anthropogenic perturbations on open ocean carbon...
Biogeosciences, 11, 4173–4190, 2014
https://doi.org/10.5194/bg-11-4173-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article 11 Aug 2014
Research article | 11 Aug 2014
Molecular insights into the microbial formation of marine dissolved organic matter: recalcitrant or labile?
B. P. Koch et al.
Related authors
Jens A. Hölemann, Bennet Juhls, Dorothea Bauch, Markus Janout, Boris P. Koch, and Birgit Heim
Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-462, https://doi.org/10.5194/bg-2020-462, 2021
Preprint under review for BG
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The Arctic Ocean receive enormous amounts of river water, which is rich in dissolved organic matter (tDOM) and an important component of the Arctic carbon cycle. Our analysis shows that mixing of three major freshwater sources is the main factor that regulates the distribution of tDOM concentrations in the Siberian shelf seas. In this context, the formation and melting of the land-fast ice in the Laptev Sea and the peak spring discharge of the Lena River are of particular importance.
Sinikka T. Lennartz, Marc von Hobe, Dennis Booge, Henry C. Bittig, Tim Fischer, Rafael Gonçalves-Araujo, Kerstin B. Ksionzek, Boris P. Koch, Astrid Bracher, Rüdiger Röttgers, Birgit Quack, and Christa A. Marandino
Ocean Sci., 15, 1071–1090, https://doi.org/10.5194/os-15-1071-2019, https://doi.org/10.5194/os-15-1071-2019, 2019
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The ocean emits the gases carbonyl sulfide (OCS) and carbon disulfide (CS2), which affect our climate. The goal of this study was to quantify the rates at which both gases are produced in the eastern tropical South Pacific (ETSP), one of the most productive oceanic regions worldwide. Both gases are produced by reactions triggered by sunlight, but we found that the amount produced depends on different factors. Our results improve numerical models to predict oceanic concentrations of both gases.
Urban Johannes Wünsch, Boris Peter Koch, Matthias Witt, and Joseph Andrew Needoba
Biogeosciences Discuss., https://doi.org/10.5194/bg-2016-263, https://doi.org/10.5194/bg-2016-263, 2016
Revised manuscript not accepted
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We used a combination of continuously measuring water chemistry sensors and periodic sampling efforts to assess the seasonal variability of dissolved organic matter (DOM) in the Columbia River in spring and summer 2013.
We found that our sensors can provide detailed data on carbon export that far exceed usual monitoring efforts. The detailed data help to understand the impact of short-lived events, such as rainstorms, on the overall terrestrial carbon flux in the Columbia River.
N. Jiao, C. Robinson, F. Azam, H. Thomas, F. Baltar, H. Dang, N. J. Hardman-Mountford, M. Johnson, D. L. Kirchman, B. P. Koch, L. Legendre, C. Li, J. Liu, T. Luo, Y.-W. Luo, A. Mitra, A. Romanou, K. Tang, X. Wang, C. Zhang, and R. Zhang
Biogeosciences, 11, 5285–5306, https://doi.org/10.5194/bg-11-5285-2014, https://doi.org/10.5194/bg-11-5285-2014, 2014
Jens A. Hölemann, Bennet Juhls, Dorothea Bauch, Markus Janout, Boris P. Koch, and Birgit Heim
Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-462, https://doi.org/10.5194/bg-2020-462, 2021
Preprint under review for BG
Short summary
Short summary
The Arctic Ocean receive enormous amounts of river water, which is rich in dissolved organic matter (tDOM) and an important component of the Arctic carbon cycle. Our analysis shows that mixing of three major freshwater sources is the main factor that regulates the distribution of tDOM concentrations in the Siberian shelf seas. In this context, the formation and melting of the land-fast ice in the Laptev Sea and the peak spring discharge of the Lena River are of particular importance.
Sinikka T. Lennartz, Marc von Hobe, Dennis Booge, Henry C. Bittig, Tim Fischer, Rafael Gonçalves-Araujo, Kerstin B. Ksionzek, Boris P. Koch, Astrid Bracher, Rüdiger Röttgers, Birgit Quack, and Christa A. Marandino
Ocean Sci., 15, 1071–1090, https://doi.org/10.5194/os-15-1071-2019, https://doi.org/10.5194/os-15-1071-2019, 2019
Short summary
Short summary
The ocean emits the gases carbonyl sulfide (OCS) and carbon disulfide (CS2), which affect our climate. The goal of this study was to quantify the rates at which both gases are produced in the eastern tropical South Pacific (ETSP), one of the most productive oceanic regions worldwide. Both gases are produced by reactions triggered by sunlight, but we found that the amount produced depends on different factors. Our results improve numerical models to predict oceanic concentrations of both gases.
Urban Johannes Wünsch, Boris Peter Koch, Matthias Witt, and Joseph Andrew Needoba
Biogeosciences Discuss., https://doi.org/10.5194/bg-2016-263, https://doi.org/10.5194/bg-2016-263, 2016
Revised manuscript not accepted
Short summary
Short summary
We used a combination of continuously measuring water chemistry sensors and periodic sampling efforts to assess the seasonal variability of dissolved organic matter (DOM) in the Columbia River in spring and summer 2013.
We found that our sensors can provide detailed data on carbon export that far exceed usual monitoring efforts. The detailed data help to understand the impact of short-lived events, such as rainstorms, on the overall terrestrial carbon flux in the Columbia River.
N. Jiao, C. Robinson, F. Azam, H. Thomas, F. Baltar, H. Dang, N. J. Hardman-Mountford, M. Johnson, D. L. Kirchman, B. P. Koch, L. Legendre, C. Li, J. Liu, T. Luo, Y.-W. Luo, A. Mitra, A. Romanou, K. Tang, X. Wang, C. Zhang, and R. Zhang
Biogeosciences, 11, 5285–5306, https://doi.org/10.5194/bg-11-5285-2014, https://doi.org/10.5194/bg-11-5285-2014, 2014
B. Rabe, P. A. Dodd, E. Hansen, E. Falck, U. Schauer, A. Mackensen, A. Beszczynska-Möller, G. Kattner, E. J. Rohling, and K. Cox
Ocean Sci., 9, 91–109, https://doi.org/10.5194/os-9-91-2013, https://doi.org/10.5194/os-9-91-2013, 2013
Related subject area
Biogeochemistry: Organic Biogeochemistry
Alkenone isotopes show evidence of active carbon concentrating mechanisms in coccolithophores as aqueous carbon dioxide concentrations fall below 7 µmol L−1
Seasonal variability and sources of in situ brGDGT production in a permanently stratified African crater lake
Novel hydrocarbon-utilizing soil mycobacteria synthesize unique mycocerosic acids at a Sicilian everlasting fire
Characterising organic carbon sources in Anthropocene affected Arctic upland lake catchments, Disko Island, West Greenland
Sediment release of dissolved organic matter to the oxygen minimum zone off Peru
Better molecular preservation of organic matter in an oxic than in a sulfidic depositional environment: evidence from Thalassiphora pelagica (Dinoflagellata, Eocene) cysts
Assessing branched tetraether lipids as tracers of soil organic carbon transport through the Carminowe Creek catchment (southwest England)
The nonconservative distribution pattern of organic matter in the Rajang, a tropical river with peatland in its estuary
Predominance of hexamethylated 6-methyl branched glycerol dialkyl glycerol tetraethers in the Mariana Trench: source and environmental implication
High-pH and anoxic conditions during soil organic matter extraction increases its electron-exchange capacity and ability to stimulate microbial Fe(III) reduction by electron shuttling
Sterol preservation in hypersaline microbial mats
Structural elucidation and environmental distributions of butanetriol and pentanetriol dialkyl glycerol tetraethers (BDGTs and PDGTs)
Distribution and degradation of terrestrial organic matter in the sediments of peat-draining rivers, Sarawak, Malaysian Borneo
Validation of carbon isotope fractionation in algal lipids as a pCO2 proxy using a natural CO2 seep (Shikine Island, Japan)
Composition and cycling of dissolved organic matter from tropical peatlands of coastal Sarawak, Borneo, revealed by fluorescence spectroscopy and parallel factor analysis
Latitudinal variations in δ30Si and δ15N signatures along the Peruvian shelf: quantifying the effects of nutrient utilization versus denitrification over the past 600 years
Diapycnal dissolved organic matter supply into the upper Peruvian oxycline
Composition and vertical flux of particulate organic matter to the oxygen minimum zone of the central Baltic Sea: impact of a sporadic North Sea inflow
Main drivers of transparent exopolymer particle distribution across the surface Atlantic Ocean
Biochemical and structural controls on the decomposition dynamics of boreal upland forest moss tissues
Spatiotemporal transformation of dissolved organic matter along an alpine stream flow path on the Qinghai–Tibet Plateau: importance of source and permafrost degradation
A quest for the biological sources of long chain alkyl diols in the western tropical North Atlantic Ocean
Long-chain diols in rivers: distribution and potential biological sources
Leaf wax n-alkanes in modern plants and topsoils from eastern Georgia (Caucasus) – implications for reconstructing regional paleovegetation
The role of diatom resting spores in pelagic–benthic coupling in the Southern Ocean
Calcium content and high calcium adaptation of plants in karst areas of southwestern Hunan, China
Substrate potential of last interglacial to Holocene permafrost organic matter for future microbial greenhouse gas production
Variation pattern of particulate organic carbon and nitrogen in oceans and inland waters
C5 glycolipids of heterocystous cyanobacteria track symbiont abundance in the diatom Hemiaulus hauckii across the tropical North Atlantic
Molecular fingerprinting of particulate organic matter as a new tool for its source apportionment: changes along a headwater drainage in coarse, medium and fine particles as a function of rainfalls
Variations and determinants of carbon content in plants: a global synthesis
The Holocene sedimentary record of cyanobacterial glycolipids in the Baltic Sea: an evaluation of their application as tracers of past nitrogen fixation
Technical note: An inverse method to relate organic carbon reactivity to isotope composition from serial oxidation
A mechanistic model of an upper bound on oceanic carbon export as a function of mixed layer depth and temperature
New molecular evidence for surface and sub-surface soil erosion controls on the composition of stream DOM during storm events
Source, composition, and environmental implication of neutral carbohydrates in sediment cores of subtropical reservoirs, South China
Isoprenoid emission response to changing light conditions of English oak, European beech and Norway spruce
Origin and processing of terrestrial organic carbon in the Amazon system: lignin phenols in river, shelf, and fan sediments
Particle export fluxes to the oxygen minimum zone of the eastern tropical North Atlantic
Spatial variability of organic matter molecular composition and elemental geochemistry in surface sediments of a small boreal Swedish lake
Role of zooplankton in determining the efficiency of the biological carbon pump
Contrasting composition of terrigenous organic matter in the dissolved, particulate and sedimentary organic carbon pools on the outer East Siberian Arctic Shelf
BVOC emissions from English oak (Quercus robur) and European beech (Fagus sylvatica) along a latitudinal gradient
Fate of terrigenous organic matter across the Laptev Sea from the mouth of the Lena River to the deep sea of the Arctic interior
Source, transport and fate of soil organic matter inferred from microbial biomarker lipids on the East Siberian Arctic Shelf
Fast-freezing with liquid nitrogen preserves bulk dissolved organic matter concentrations, but not its composition
Chemodiversity of dissolved organic matter in the Amazon Basin
Identification and analysis of low-molecular-weight dissolved organic carbon in subglacial basal ice ecosystems by ion chromatography
Evolution of dissolved and particulate chromophoric materials during the VAHINE mesocosm experiment in the New Caledonian coral lagoon (south-west Pacific)
Evidence for methane production by the marine algae Emiliania huxleyi
Marcus P. S. Badger
Biogeosciences, 18, 1149–1160, https://doi.org/10.5194/bg-18-1149-2021, https://doi.org/10.5194/bg-18-1149-2021, 2021
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Reconstructing ancient atmospheric CO2 is an important aim of palaeoclimate science in order to understand the Earth's climate system. One method, the alkenone proxy based on molecular fossils of coccolithophores, has been recently shown to be ineffective at low-to-moderate CO2 levels. In this paper I show that this is likely due to changes in the biogeochemistry of the coccolithophores when there is low carbon availability, but for much of the Cenozoic the alkenone proxy should have utility.
Loes G. J. van Bree, Francien Peterse, Allix J. Baxter, Wannes De Crop, Sigrid van Grinsven, Laura Villanueva, Dirk Verschuren, and Jaap S. Sinninghe Damsté
Biogeosciences, 17, 5443–5463, https://doi.org/10.5194/bg-17-5443-2020, https://doi.org/10.5194/bg-17-5443-2020, 2020
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Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are used as a paleothermometer based on their temperature dependence in global soils, but aquatic production complicates their use in lakes. BrGDGTs in the water column of Lake Chala, East Africa, respond to oxygen conditions and mixing. Changes in their signal can be linked to bacterial community composition rather than membrane adaptation to changing conditions. Their integrated signal in the sediment reflects mean air temperature.
Nadine T. Smit, Laura Villanueva, Darci Rush, Fausto Grassa, Caitlyn R. Witkowski, Mira Holzheimer, Adriaan J. Minnaard, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-349, https://doi.org/10.5194/bg-2020-349, 2020
Revised manuscript accepted for BG
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Soils from an everlasting fire (gas seep) in Sicily, Italy reveal high relative abundances of novel uncultivated mycobacteria and unique 13C depleted mycocerosic acids (multi-methyl branched fatty acids) close to the main gas seep. Our results imply, that mycocerosic acids in combination with their depleted δ13C values offer a new biomarker tool to study the role of soil mycobacteria as hydrocarbon consumers in the modern and past global carbon cycle.
Mark A. Stevenson, Suzanne McGowan, Emma J. Pearson, George E. A. Swann, Melanie J. Leng, Vivienne J. Jones, Joseph J. Bailey, Xianyu Huang, and Erika Whiteford
Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-347, https://doi.org/10.5194/bg-2020-347, 2020
Revised manuscript accepted for BG
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We link detailed stable isotope and biomarker analyses from the catchments of three Arctic upland lakes on Disko Island (West Greenland) to a recent dated sediment core to understand how carbon cycling has changed over the past ~500 years. We find that the carbon deposited in sediments in these upland lakes are predominately sourced from in-lake production due to the catchments limited terrestrial vegetation and elevation and that recent increases in algal production link with climate change.
Alexandra N. Loginova, Andrew W. Dale, Frédéric A. C. Le Moigne, Sören Thomsen, Stefan Sommer, David Clemens, Klaus Wallmann, and Anja Engel
Biogeosciences, 17, 4663–4679, https://doi.org/10.5194/bg-17-4663-2020, https://doi.org/10.5194/bg-17-4663-2020, 2020
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We measured dissolved organic carbon (DOC), nitrogen (DON) and matter (DOM) optical properties in pore waters and near-bottom waters of the eastern tropical South Pacific off Peru. The difference between diffusion-driven and net fluxes of DOC and DON and qualitative changes in DOM optical properties suggested active microbial utilisation of the released DOM at the sediment–water interface. Our results suggest that the sediment release of DOM contributes to microbial processes in the area.
Gerard J. M. Versteegh, Alexander J. P. Houben, and Karin A. F. Zonneveld
Biogeosciences, 17, 3545–3561, https://doi.org/10.5194/bg-17-3545-2020, https://doi.org/10.5194/bg-17-3545-2020, 2020
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Anoxic sediments mostly contain much more organic matter than oxic ones, and therefore organic matter in anoxic settings is often considered to be preserved better than in oxic settings. However, through the analysis of the same fossil dinoflagellate cyst species from both oxic and anoxic settings, we show that at a molecular level the preservation in the oxic sediments may be better since in the anoxic setting the cyst macromolecule has been altered by postdepositional modification.
Jingjing Guo, Miriam Glendell, Jeroen Meersmans, Frédérique Kirkels, Jack J. Middelburg, and Francien Peterse
Biogeosciences, 17, 3183–3201, https://doi.org/10.5194/bg-17-3183-2020, https://doi.org/10.5194/bg-17-3183-2020, 2020
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The fluxes of soil organic carbon (OC) transport from land to sea are poorly constrained, mostly due to the lack of a specific tracer for soil OC. Here we evaluate the use of specific molecules derived from soil bacteria as a tracer for soil OC in a small river catchment. We find that the initial soil signal is lost upon entering the aquatic environment. However, the local environmental history of the catchment is reflected by these molecules in the lake sediments that act as their sink.
Zhuo-Yi Zhu, Joanne Oakes, Bradley Eyre, Youyou Hao, Edwin Sien Aun Sia, Shan Jiang, Moritz Müller, and Jing Zhang
Biogeosciences, 17, 2473–2485, https://doi.org/10.5194/bg-17-2473-2020, https://doi.org/10.5194/bg-17-2473-2020, 2020
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Samples were collected in August 2016 in the Rajang River and its estuary, with tropical forest in the river basin and peatland in the estuary. Organic matter composition was influenced by transportation in the river basin, whereas peatland added clear biodegraded parts to the fluvial organic matter, which implies modification of the initial lability and/or starting points in the subsequent degradation and alternation processes after the organic matter enters the sea.
Wenjie Xiao, Yasong Wang, Yongsheng Liu, Xi Zhang, Linlin Shi, and Yunping Xu
Biogeosciences, 17, 2135–2148, https://doi.org/10.5194/bg-17-2135-2020, https://doi.org/10.5194/bg-17-2135-2020, 2020
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The hadal zone (6–11 km depth) is the least explored habitat on Earth. We studied microbial branched glycerol dialkyl glycerol tetraethers (brGDGTs) in the Challenger Deep, Mariana Trench. One unique feature is the strong predominance of 6-methyl brGDGT, which likely reflects an adaption of brGDGT-producing bacteria to alkaline seawater and low temperature. BrGDGTs, with elemental and isotopic data, suggest an autochthonous product for brGDGT. A new approach is proposed for brGDGT sourcing.
Yuge Bai, Edisson Subdiaga, Stefan B. Haderlein, Heike Knicker, and Andreas Kappler
Biogeosciences, 17, 683–698, https://doi.org/10.5194/bg-17-683-2020, https://doi.org/10.5194/bg-17-683-2020, 2020
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Biogeochemical processes of SOM are key for greenhouse gas emission and water quality. We extracted SOM by water or by NaOH–HCl under oxic–anoxic conditions. Chemical and anoxic extractions lead to higher SOM electron exchange capacities, resulting in stimulation of microbial Fe(III) reduction. Therefore, aqueous pH-neutral SOM extracts should be used to reflect environmental SOM redox processes, and artifacts of chemical extractions need to be considered when evaluating SOM redox processes.
Yan Shen, Volker Thiel, Pablo Suarez-Gonzalez, Sebastiaan W. Rampen, and Joachim Reitner
Biogeosciences, 17, 649–666, https://doi.org/10.5194/bg-17-649-2020, https://doi.org/10.5194/bg-17-649-2020, 2020
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Today, sterols are widespread in plants, animals, and fungi but are almost absent in the oldest rocks. Microbial mats, representing the earliest complex ecosystems on Earth, were omnipresent in Precambrian marine environments and may have degraded the sterols at that time. Here we analyze the distribution of sterols through a microbial mat. This provides insight into how variations in biological and nonbiological factors affect the preservation of sterols in modern and ancient microbial mats.
Sarah Coffinet, Travis B. Meador, Lukas Mühlena, Kevin W. Becker, Jan Schröder, Qing-Zeng Zhu, Julius S. Lipp, Verena B. Heuer, Matthew P. Crump, and Kai-Uwe Hinrichs
Biogeosciences, 17, 317–330, https://doi.org/10.5194/bg-17-317-2020, https://doi.org/10.5194/bg-17-317-2020, 2020
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This study deals with two membrane lipids called BDGTs and PDGTs. Membrane lipids are molecules forming the cell envelope of all organisms. Different organisms produce different lipids thus they can be used to detect the presence of specific organisms in the environment. We analyzed the structure of these new lipids and looked for potential producers. We found that they are likely made by microbes emitting methane below the sediment surface and could be used to track these specific microbes.
Ying Wu, Kun Zhu, Jing Zhang, Moritz Müller, Shan Jiang, Aazani Mujahid, Mohd Fakharuddin Muhamad, and Edwin Sien Aun Sia
Biogeosciences, 16, 4517–4533, https://doi.org/10.5194/bg-16-4517-2019, https://doi.org/10.5194/bg-16-4517-2019, 2019
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Our understanding of terrestrial organic matter (TOM) in tropical peat-draining rivers remains limited, especially in Southeast Asia. We explored the characteristics of TOM via bulk parameters and lignin phenols of sediment in Malaysia. This showed that the most important plant source of the organic matter in these rivers is woody angiosperm C3 plants with limited diagenetic alteration. This slower degradation of TOM may be a link to higher total nitrogen content, especially for the small river.
Caitlyn R. Witkowski, Sylvain Agostini, Ben P. Harvey, Marcel T. J. van der Meer, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 16, 4451–4461, https://doi.org/10.5194/bg-16-4451-2019, https://doi.org/10.5194/bg-16-4451-2019, 2019
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Carbon dioxide concentrations (pCO2) in the atmosphere play an integral role in Earth system dynamics, especially climate. Past climates help us understand future ones, but reconstructing pCO2 over the geologic record remains a challenge. This research demonstrates new approaches for exploring past pCO2 via the carbon isotope fractionation in general algal lipids, which we test over a high CO2 gradient from a naturally occurring CO2 seep.
Yongli Zhou, Patrick Martin, and Moritz Müller
Biogeosciences, 16, 2733–2749, https://doi.org/10.5194/bg-16-2733-2019, https://doi.org/10.5194/bg-16-2733-2019, 2019
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We found that peatlands in coastal Sarawak, Borneo, export extremely humified organic matter, which dominates the riverine organic matter pool and conservatively mixes with seawater, while the freshly produced fraction is low and stable in concentration at all salinities. We estimated that terrigenous fractions, which showed high photolability, still account for 20 % of the coastal dissolved organic carbon pool, implying the importance of peat-derived organic matter in the coastal carbon cycle.
Kristin Doering, Claudia Ehlert, Philippe Martinez, Martin Frank, and Ralph Schneider
Biogeosciences, 16, 2163–2180, https://doi.org/10.5194/bg-16-2163-2019, https://doi.org/10.5194/bg-16-2163-2019, 2019
Alexandra N. Loginova, Sören Thomsen, Marcus Dengler, Jan Lüdke, and Anja Engel
Biogeosciences, 16, 2033–2047, https://doi.org/10.5194/bg-16-2033-2019, https://doi.org/10.5194/bg-16-2033-2019, 2019
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High primary production in the Peruvian upwelling system is followed by rapid heterotrophic utilization of organic matter and supports the formation of one of the most intense oxygen minimum zones (OMZs) in the world. Here, we estimated vertical fluxes of oxygen and dissolved organic matter (DOM) from the surface to the OMZ. Our results suggest that DOM remineralization substantially reduces oxygen concentration in the upper water column and controls the shape of the upper oxycline.
Carolina Cisternas-Novoa, Frédéric A. C. Le Moigne, and Anja Engel
Biogeosciences, 16, 927–947, https://doi.org/10.5194/bg-16-927-2019, https://doi.org/10.5194/bg-16-927-2019, 2019
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We investigate the composition and vertical fluxes of POM in two deep basins of the Baltic Sea (GB: Gotland Basin and LD: Landsort Deep). The two basins showed different O2 regimes resulting from the intrusion of oxygen-rich water from the North Sea that ventilated the deep waters in GB, but not in LD.
In GB, O2 intrusions lead to a high abundance of manganese oxides that aggregate with POM, altering its composition and vertical flux and contributing to a higher POC transfer efficiency in GB.
Marina Zamanillo, Eva Ortega-Retuerta, Sdena Nunes, Pablo Rodríguez-Ros, Manuel Dall'Osto, Marta Estrada, Maria Montserrat Sala, and Rafel Simó
Biogeosciences, 16, 733–749, https://doi.org/10.5194/bg-16-733-2019, https://doi.org/10.5194/bg-16-733-2019, 2019
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Many marine microorganisms produce polysaccharide-rich transparent exopolymer particles (TEPs) for rather unknown reasons but with important consequences for the ocean carbon cycle, sea–air gas exchange and formation of organic aerosols. Here we compare surface–ocean distributions of TEPs and physical, chemical and biological variables along a N–S transect in the Atlantic Ocean. Our data suggest that phytoplankton and not bacteria are the main TEP producers, and solar radiation acts as a sink.
Michael Philben, Sara Butler, Sharon A. Billings, Ronald Benner, Kate A. Edwards, and Susan E. Ziegler
Biogeosciences, 15, 6731–6746, https://doi.org/10.5194/bg-15-6731-2018, https://doi.org/10.5194/bg-15-6731-2018, 2018
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We explored the relationship between chemical composition and the temperature sensitivity of moss decomposition using 959-day lab incubations. Mass loss was low despite the predominance of carbohydrates, indicating the persistence of labile C. Scanning electron microscopy revealed little change in the moss cell-wall structure. These results suggest that the moss cell-wall matrix protects labile C from decomposition, contributing to the globally important stocks of moss-derived C.
Yinghui Wang, Robert G. M. Spencer, David C. Podgorski, Anne M. Kellerman, Harunur Rashid, Phoebe Zito, Wenjie Xiao, Dandan Wei, Yuanhe Yang, and Yunping Xu
Biogeosciences, 15, 6637–6648, https://doi.org/10.5194/bg-15-6637-2018, https://doi.org/10.5194/bg-15-6637-2018, 2018
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With global warming, thawing of permafrost releases dissolved organic matter (DOM) into streams. By analyzing DOM along an alpine stream on the Qinghai–Tibet Plateau, we found DOM was mainly from the active layer, but with deepening of the active layer, the contribution of the deep permafrost layer increased, causing a change in the chemical composition of DOM. From the head- to downstream, DOM is undergoing rapid degradation, but some components are persistent and can be transported downstream.
Sergio Balzano, Julie Lattaud, Laura Villanueva, Sebastiaan W. Rampen, Corina P. D. Brussaard, Judith van Bleijswijk, Nicole Bale, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 15, 5951–5968, https://doi.org/10.5194/bg-15-5951-2018, https://doi.org/10.5194/bg-15-5951-2018, 2018
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We tried to identify the microbes which biosynthesize a class of lipids widespread in seawater, the long chain alkyl diols (LCDs). We could not find any microorganism likely involved in the production of LCDs. The amounts of LCDs found are too high to be produced by living organisms and are likely to be part of the refractory organic matter persisting for long periods in the water column.
Julie Lattaud, Frédérique Kirkels, Francien Peterse, Chantal V. Freymond, Timothy I. Eglinton, Jens Hefter, Gesine Mollenhauer, Sergio Balzano, Laura Villanueva, Marcel T. J. van der Meer, Ellen C. Hopmans, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 15, 4147–4161, https://doi.org/10.5194/bg-15-4147-2018, https://doi.org/10.5194/bg-15-4147-2018, 2018
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Long-chain diols (LCDs) are biomarkers that occur widespread in marine environments and also in lakes and rivers. In this study, we looked at the distribution of LCDs in three river systems (Godavari, Danube, and Rhine) in relation to season, precipitation, and temperature. We found out that the LCDs are likely being produced in calm areas of the river systems and that marine LCDs have a different distribution than riverine LCDs.
Marcel Bliedtner, Imke K. Schäfer, Roland Zech, and Hans von Suchodoletz
Biogeosciences, 15, 3927–3936, https://doi.org/10.5194/bg-15-3927-2018, https://doi.org/10.5194/bg-15-3927-2018, 2018
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In this study, we systematically analyze leaf wax derived n-alkane patterns in eastern Georgia to test their potential for paleoenvironmental reconstructions in the semi-humid to semi-arid central southern Caucasus region. We investigated the influence of vegetation types on the leaf wax signal in modern plants and topsoil material. Our results show distinct and systematic differences in the n-alkane patterns between vegetation types and prove their potential for vegetation reconstructions.
Mathieu Rembauville, Stéphane Blain, Clara Manno, Geraint Tarling, Anu Thompson, George Wolff, and Ian Salter
Biogeosciences, 15, 3071–3084, https://doi.org/10.5194/bg-15-3071-2018, https://doi.org/10.5194/bg-15-3071-2018, 2018
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Sinking phytoplankton from the surface ocean provide the principal energy source to deep-ocean ecosystems. Our aim was to understand how different phytoplankton communities impact the chemical nature of this sinking material. We show certain types of phytoplankton can preferentially export energy-rich storage compounds to the seafloor. Any climate-driven effects on phytoplankton community structure could thus impact remote deep-ocean ecosystems thousands of kilometres beneath the surface.
Xiaocong Wei, Xiangwen Deng, Wenhua Xiang, Pifeng Lei, Shuai Ouyang, Hongfang Wen, and Liang Chen
Biogeosciences, 15, 2991–3002, https://doi.org/10.5194/bg-15-2991-2018, https://doi.org/10.5194/bg-15-2991-2018, 2018
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Karst is a kind of typical calcium-rich environment, which is widely distributed. We measured the Ca2+ content of 41 plant species, as well as soil total Ca2+ and exchange Ca2+. We found out that different plants have different ways to high Ca2+ adaptation. According to the different high Ca2+ adaptation of the 17 dominant species, we divided them into 3 categories: Ca-indifferent plants, high-Ca plants and low-Ca plants. Our results can provide a theoretical basis for vegetation restoration.
Janina G. Stapel, Georg Schwamborn, Lutz Schirrmeister, Brian Horsfield, and Kai Mangelsdorf
Biogeosciences, 15, 1969–1985, https://doi.org/10.5194/bg-15-1969-2018, https://doi.org/10.5194/bg-15-1969-2018, 2018
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Climate warming in the Arctic results in thawing of permafrost deposits. This promotes the accessibility of freeze-locked old organic matter (OM) accumulated during the past. Characterizing OM of different depositional ages, we were able to show that OM from last glacial Yedoma deposits possess the highest potential to provide organic substrates such as acetate for microbial greenhouse gas production and therefore to accelerate the carbon–climate feedback cycle during ongoing global warming.
Changchun Huang, Quanliang Jiang, Ling Yao, Hao Yang, Chen Lin, Tao Huang, A-Xing Zhu, and Yimin Zhang
Biogeosciences, 15, 1827–1841, https://doi.org/10.5194/bg-15-1827-2018, https://doi.org/10.5194/bg-15-1827-2018, 2018
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The latitudinal dependency of POC / PON in ocean and inland water is significant, regulated by trophic state and climate, etc. factors. POC / PON significantly increased from coastal water (6.89 ± 2.38) to open ocean (7.59 ± 4.22) with the increasing rate of 0.0024 / km. The re-examination of the global relationship between, and variations in, POC and PON could be important for the global and regional coupling between the carbon and nitrogen cycles in the ocean and freshwater.
Nicole J. Bale, Tracy A. Villareal, Ellen C. Hopmans, Corina P. D. Brussaard, Marc Besseling, Denise Dorhout, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 15, 1229–1241, https://doi.org/10.5194/bg-15-1229-2018, https://doi.org/10.5194/bg-15-1229-2018, 2018
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Associations between diatoms and N-fixing cyanobacteria (diatom–diazotroph associations, DDAs) play an important role in the N cycle of the tropical North Atlantic. Heterocysts are the site of N fixation and contain unique glycolipids. We measured these glycolipids in the water column and surface sediment from the tropical North Atlantic. We found a significant correlation between the concentration of glycolipid and of DDAs, strengthening their application as biomarkers.
Laurent Jeanneau, Richard Rowland, and Shreeram Inamdar
Biogeosciences, 15, 973–985, https://doi.org/10.5194/bg-15-973-2018, https://doi.org/10.5194/bg-15-973-2018, 2018
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The source of particulate organic matter in headwaters during storm events remains an open question. We use the molecular composition of organic matter sampled during four spring–summer storms and compare it to potential sources. We identify litter, streambed and vicinal soils as the main sources of particulate organic matter. Their proportions depend on (i) the size of the catchment and (ii) the rain event.
Suhui Ma, Feng He, Di Tian, Dongting Zou, Zhengbing Yan, Yulong Yang, Tiancheng Zhou, Kaiyue Huang, Haihua Shen, and Jingyun Fang
Biogeosciences, 15, 693–702, https://doi.org/10.5194/bg-15-693-2018, https://doi.org/10.5194/bg-15-693-2018, 2018
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Plant carbon (C) content is critical to the assessment of the global C cycle. Our results showed that the global average C contents in organs were significantly lower than a canonical value of 50 %. Plant C content tended to decrease with increasing latitude, and life form explained more variation than climate. Our findings suggest that specific C content values of different organs and life forms should be incorporated into the estimations of regional and global vegetation biomass C stocks.
Martina Sollai, Ellen C. Hopmans, Nicole J. Bale, Anchelique Mets, Lisa Warden, Matthias Moros, and Jaap S. Sinninghe Damsté
Biogeosciences, 14, 5789–5804, https://doi.org/10.5194/bg-14-5789-2017, https://doi.org/10.5194/bg-14-5789-2017, 2017
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The Baltic Sea is characterized by recurring summer phytoplankton blooms, dominated by a few cyanobacterial species. These bacteria are able to use dinitrogen gas as the source for nitrogen and produce very specific lipids. We analyzed these lipids in a sediment core to study their presence over the past 7000 years. This reveals that cyanobacterial blooms have not only occurred in the last decades but were common at times when the Baltic was connected to the North Sea.
Jordon D. Hemingway, Daniel H. Rothman, Sarah Z. Rosengard, and Valier V. Galy
Biogeosciences, 14, 5099–5114, https://doi.org/10.5194/bg-14-5099-2017, https://doi.org/10.5194/bg-14-5099-2017, 2017
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The balance between organic matter (OM) fixation and decay is a major control on atmospheric CO2 concentrations. Understanding the environmental, chemical, and physical mechanisms that control the distribution of OM decay rates is therefore critical for constraining the global carbon cycle. In this manuscript, we derive a method to relate OM reactivity to its isotope composition using a kinetic model and provide a novel framework to discern the controls on OM decay rates.
Zuchuan Li and Nicolas Cassar
Biogeosciences, 14, 5015–5027, https://doi.org/10.5194/bg-14-5015-2017, https://doi.org/10.5194/bg-14-5015-2017, 2017
Marie Denis, Laurent Jeanneau, Patrice Petitjean, Anaëlle Murzeau, Marine Liotaud, Louison Yonnet, and Gérard Gruau
Biogeosciences, 14, 5039–5051, https://doi.org/10.5194/bg-14-5039-2017, https://doi.org/10.5194/bg-14-5039-2017, 2017
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The results of this study highlight the changes of DOM composition in soil solutions and surface runoff, probably controlled by water-table dynamics and pre-event hydrological conditions. These changes should be taken into account for a better understanding of micropollutant mobility. Moreover, this work has implications for modeling DOM export in headwater catchments, as many studies assume that DOM transfer during storm events consists of the flushing of pre-existing soil solution DOM.
Dandan Duan, Dainan Zhang, Yu Yang, Jingfu Wang, Jing'an Chen, and Yong Ran
Biogeosciences, 14, 4009–4022, https://doi.org/10.5194/bg-14-4009-2017, https://doi.org/10.5194/bg-14-4009-2017, 2017
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Neutral carbohydrates, carbon isotopic composition, and algal productivity proxies in three reservoir sediment cores, South China, were investigated. Monosaccharide compositions and diagnostic parameters indicate a predominant contribution of phytoplankton in the sediment cores. Algal monosaccharide content is highly related to the algal productivity and increasing mean air temperature, but not to nutrient input, demonstrating the effect of climate warming in low-latitude regions.
Ylva van Meeningen, Guy Schurgers, Riikka Rinnan, and Thomas Holst
Biogeosciences, 14, 4045–4060, https://doi.org/10.5194/bg-14-4045-2017, https://doi.org/10.5194/bg-14-4045-2017, 2017
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Leaf scale measurements have been performed on English oak, European beech and Norway spruce at a field site in Denmark to study the release of volatile compounds in response to a change in light. Whilst some compounds, like isoprene and sabinene, increased with increasing light, other compounds, like camphene, showed no light response for most of the trees. This can help to increase our knowledge of how species and compounds respond to light and to possibly improve how they can be modeled.
Shuwen Sun, Enno Schefuß, Stefan Mulitza, Cristiano M. Chiessi, André O. Sawakuchi, Matthias Zabel, Paul A. Baker, Jens Hefter, and Gesine Mollenhauer
Biogeosciences, 14, 2495–2512, https://doi.org/10.5194/bg-14-2495-2017, https://doi.org/10.5194/bg-14-2495-2017, 2017
Anja Engel, Hannes Wagner, Frédéric A. C. Le Moigne, and Samuel T. Wilson
Biogeosciences, 14, 1825–1838, https://doi.org/10.5194/bg-14-1825-2017, https://doi.org/10.5194/bg-14-1825-2017, 2017
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To better understand the role of oxygen for the biological carbon pump, we studied particle fluxes through hypoxic waters in the eastern tropical North Atlantic. Attenuation of organic carbon fluxes over depth was lower than expected from seawater temperatures, indicating co-effects of oxygen concentration. Differences were observed for individual organic components, suggesting that future carbon export fluxes may depend on changes in surface ocean organic matter quality under global change.
Julie Tolu, Johan Rydberg, Carsten Meyer-Jacob, Lorenz Gerber, and Richard Bindler
Biogeosciences, 14, 1773–1792, https://doi.org/10.5194/bg-14-1773-2017, https://doi.org/10.5194/bg-14-1773-2017, 2017
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In this study, we demonstrated that the composition of sediment organic matter can vary significantly within a single lake, in a close relationship with the spatial patterns of elemental inorganic geochemistry. This results from a combination of different bio-, geo- and physicochemical lake factors, and our results highlight that the potential for large spatial variability across lakes should be considered when studying carbon, nutrient and trace element cycling at lake and global scales.
Emma L. Cavan, Stephanie A. Henson, Anna Belcher, and Richard Sanders
Biogeosciences, 14, 177–186, https://doi.org/10.5194/bg-14-177-2017, https://doi.org/10.5194/bg-14-177-2017, 2017
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The biological carbon pump (BCP) plays a key role in regulating atmospheric CO2. Controls on the efficiency at which this occurs are poorly known. Here we combine in situ observations with an ecosystem model to show that zooplankton have an important role in regulating the efficiency of the BCP. Predicted future changes in ocean conditions, such as expansion of oxygen minimum zones, may decrease the role of zooplankton in the BCP globally, increasing its efficiency and altering atmospheric CO2.
Joan A. Salvadó, Tommaso Tesi, Marcus Sundbom, Emma Karlsson, Martin Kruså, Igor P. Semiletov, Elena Panova, and Örjan Gustafsson
Biogeosciences, 13, 6121–6138, https://doi.org/10.5194/bg-13-6121-2016, https://doi.org/10.5194/bg-13-6121-2016, 2016
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Fluvial discharge and coastal erosion of the permafrost-dominated East Siberian Arctic delivers large quantities of terrigenous organic carbon (Terr-OC) to marine waters. We assessed its fate and composition in different marine pools with a suite of biomarkers. The dissolved organic carbon is transporting off-shelf “young” and fresh vascular plant material, while sedimentary and near-bottom particulate organic carbon preferentially carries old organic carbon released from thawing permafrost.
Ylva van Meeningen, Guy Schurgers, Riikka Rinnan, and Thomas Holst
Biogeosciences, 13, 6067–6080, https://doi.org/10.5194/bg-13-6067-2016, https://doi.org/10.5194/bg-13-6067-2016, 2016
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English oak and European beech are common European trees known to release volatile compounds such as isoprene and monoterpenes. By doing leaf chamber measurements at three sites in Europe, the aim was to study how the emission differed for cloned trees growing at different sites. The measured emission rates from clones varied between sites, but the relative compound contribution was stable both within and between sites. This can help to increase our knowledge of emission pattern variability.
Lisa Bröder, Tommaso Tesi, Joan A. Salvadó, Igor P. Semiletov, Oleg V. Dudarev, and Örjan Gustafsson
Biogeosciences, 13, 5003–5019, https://doi.org/10.5194/bg-13-5003-2016, https://doi.org/10.5194/bg-13-5003-2016, 2016
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Thawing permafrost may release large amounts of terrestrial organic carbon (TerrOC) to the Arctic Ocean. We assessed its fate in the marine environment with a suite of biomarkers. Across the Laptev Sea their concentrations in surface sediments decreased significantly and showed a trend to qualitatively more degraded TerrOC with increasing water depth. We infer that the degree of degradation of TerrOC is a function of the time spent under oxic conditions during protracted cross-shelf transport.
Juliane Bischoff, Robert B. Sparkes, Ayça Doğrul Selver, Robert G. M. Spencer, Örjan Gustafsson, Igor P. Semiletov, Oleg V. Dudarev, Dirk Wagner, Elizaveta Rivkina, Bart E. van Dongen, and Helen M. Talbot
Biogeosciences, 13, 4899–4914, https://doi.org/10.5194/bg-13-4899-2016, https://doi.org/10.5194/bg-13-4899-2016, 2016
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The Arctic contains a large pool of carbon that is vulnerable to warming and can be released by rivers and coastal erosion. We study microbial lipids (BHPs) in permafrost and shelf sediments to trace the source, transport and fate of this carbon. BHPs in permafrost deposits are released to the shelf by rivers and coastal erosion, in contrast to other microbial lipids (GDGTs) that are transported by rivers. Several further analyses are needed to understand the complex East Siberian Shelf system.
Lisa Thieme, Daniel Graeber, Martin Kaupenjohann, and Jan Siemens
Biogeosciences, 13, 4697–4705, https://doi.org/10.5194/bg-13-4697-2016, https://doi.org/10.5194/bg-13-4697-2016, 2016
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Freezing can affect dissolved organic matter properties and concentrations. Nevertheless, water samples are regularly frozen for sample preservation. To test, if fast-freezing with liquid nitrogen instead of normal freezing at −18 °C can prevent changes in DOM characteristics, we compared fresh and differently frozen terrestrial water samples. We found that fast-freezing with liquid nitrogen can prevent bulk organic matter concentrations but not its spectroscopic properties.
Michael Gonsior, Juliana Valle, Philippe Schmitt-Kopplin, Norbert Hertkorn, David Bastviken, Jenna Luek, Mourad Harir, Wanderley Bastos, and Alex Enrich-Prast
Biogeosciences, 13, 4279–4290, https://doi.org/10.5194/bg-13-4279-2016, https://doi.org/10.5194/bg-13-4279-2016, 2016
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We present in this study a highly diverse and complex chemodiversity of dissolved organic matter (DOM) in the Amazon Basin analyzed by modern ultrahigh-resolution mass spectrometry and optical property analyses. DOM within the Rio Madeira (white water), Rio Negro (black water) and Rio Tapajós (clear water) area showed a large overlap of thousands of molecular formulae, but also unique signatures were apparent for each region, with significant correlations to colored DOM.
Emily C. O'Donnell, Jemma L. Wadham, Grzegorz P. Lis, Martyn Tranter, Amy E. Pickard, Marek Stibal, Paul Dewsbury, and Sean Fitzsimons
Biogeosciences, 13, 3833–3846, https://doi.org/10.5194/bg-13-3833-2016, https://doi.org/10.5194/bg-13-3833-2016, 2016
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We use a novel ion chromatographic analysis that provides the first identification and quantification of major low-molecular-weight dissolved organic carbon (LMW-DOC) compounds in basal ice. LMW-DOC concentrations were dependent on the bioavailability of the overridden organic carbon, which in turn was influenced by the type of overridden material. The overridden material may thus act as a direct (abiotic leaching) and indirect (microbial cycling) source of DOC to the subglacial environment.
Marc Tedetti, Lauriane Marie, Rüdiger Röttgers, Martine Rodier, France Van Wambeke, Sandra Helias, Mathieu Caffin, Véronique Cornet-Barthaux, and Cécile Dupouy
Biogeosciences, 13, 3283–3303, https://doi.org/10.5194/bg-13-3283-2016, https://doi.org/10.5194/bg-13-3283-2016, 2016
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In the framework of the VAHINE project, we investigated the spectral characteristics and the variability of dissolved and particulate chromophoric materials throughout a 23-day mesocosm experiment conducted in the south-west Pacific at the mouth of the New Caledonian coral lagoon. We found that the dynamics of CDOM and particulate matter absorption were strongly coupled with those of cyanobacteria Synechococcus spp. and bacterial production.
Katharina Lenhart, Thomas Klintzsch, Gerald Langer, Gernot Nehrke, Michael Bunge, Sylvia Schnell, and Frank Keppler
Biogeosciences, 13, 3163–3174, https://doi.org/10.5194/bg-13-3163-2016, https://doi.org/10.5194/bg-13-3163-2016, 2016
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In this study we investigated marine algae as a source of CH4 in oxic surface waters of oceans. Algae-derived CH4 may explain the CH4 oversaturating state within the surface mixed layer, sometimes also termed the "oceanic methane paradox".
This finding of an overlooked source of CH4 in marine environments will be of considerable importance to scientists in many disciplines because algae play a crucial role in organic matter cycling in marine and freshwater ecosystems.
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