Articles | Volume 12, issue 1
https://doi.org/10.5194/bg-12-269-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-12-269-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
15 Jan 2015
Research article |
| 15 Jan 2015
Seasonal variations in concentration and lability of dissolved organic carbon in Tokyo Bay
A. Kubo
CORRESPONDING AUTHOR
Department of Ocean Sciences, Tokyo University of Marine Science and Technology, 4-5-7 Konan, Minato-ku, Tokyo, 108-8477, Japan
M. Yamamoto-Kawai
Center for Advanced Science and Technology, Tokyo University of Marine Science and Technology, 4-5-7 Konan, Minato-ku, Tokyo, 108-8477, Japan
Department of Ocean Sciences, Tokyo University of Marine Science and Technology, 4-5-7 Konan, Minato-ku, Tokyo, 108-8477, Japan
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Katsuro Katsumata, Shigeru Aoki, Kay I. Ohshima, and Michiyo Yamamoto-Kawai
EGUsphere, https://doi.org/10.5194/egusphere-2024-2237, https://doi.org/10.5194/egusphere-2024-2237, 2024
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Ship-based observation provides data of such sea water properties as temperature, salinity, nutrients, and various gases, but some important world oceans have not still been covered. A voyage in 2019/20 in the southwest Indian Ocean along approximately 55° E from 30° S to the Antarctica attempted to fill one such data sparse regions. The measured cross section of the Antarctic Circumpolar Current and accompanying eddies demonstrates various oceanic behaviours including fronts and eddy mixing.
Fuminori Hashihama, Hiroaki Saito, Taketoshi Kodama, Saori Yasui-Tamura, Jota Kanda, Iwao Tanita, Hiroshi Ogawa, E. Malcolm S. Woodward, Philip W. Boyd, and Ken Furuya
Biogeosciences, 18, 897–915, https://doi.org/10.5194/bg-18-897-2021, https://doi.org/10.5194/bg-18-897-2021, 2021
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We investigated the nutrient assimilation characteristics of deep-water-induced phytoplankton blooms across the subtropical North and South Pacific Ocean. Nutrient drawdown ratios of dissolved inorganic nitrogen to phosphate were anomalously low in the western North Pacific, likely due to the high phosphate uptake capability of low-phosphate-adapted phytoplankton. The anomalous phosphate uptake might influence the maintenance of chronic phosphate depletion in the western North Pacific.
Sayako Ueda, Kazuo Osada, Keiichiro Hara, Masanori Yabuki, Fuminori Hashihama, and Jota Kanda
Atmos. Chem. Phys., 18, 9207–9224, https://doi.org/10.5194/acp-18-9207-2018, https://doi.org/10.5194/acp-18-9207-2018, 2018
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We investigated mixing states and morphological features of soot-containing particles, by using water-dialysis analysis in remote ocean areas over the southern Indian Ocean and the Southern Ocean. Most particles were water-soluble. However, rarely were particles (2.1 % of particles on a TEM sample at a maximum) found to contain insoluble residuals with the characteristic soot shape.
Michiyo Yamamoto-Kawai, Takahisa Mifune, Takashi Kikuchi, and Shigeto Nishino
Biogeosciences, 13, 6155–6169, https://doi.org/10.5194/bg-13-6155-2016, https://doi.org/10.5194/bg-13-6155-2016, 2016
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Seasonal variation of Ω in bottom water in Hope Valley, a biological hotspot in the southern Chukchi Sea, was reconstructed from 2-year-round mooring data of temperature, salinity and oxygen, with empirical equations derived from ship-based observations.
K. E. Giesbrecht, L. A. Miller, M. Davelaar, S. Zimmermann, E. Carmack, W. K. Johnson, R. W. Macdonald, F. McLaughlin, A. Mucci, W. J. Williams, C. S. Wong, and M. Yamamoto-Kawai
Earth Syst. Sci. Data, 6, 91–104, https://doi.org/10.5194/essd-6-91-2014, https://doi.org/10.5194/essd-6-91-2014, 2014
J. Kanda
Biogeosciences, 10, 6107–6113, https://doi.org/10.5194/bg-10-6107-2013, https://doi.org/10.5194/bg-10-6107-2013, 2013
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Emily B. Graham, Hyun-Seob Song, Samantha Grieger, Vanessa A. Garayburu-Caruso, James C. Stegen, Kevin D. Bladon, and Allison N. Myers-Pigg
Biogeosciences, 20, 3449–3457, https://doi.org/10.5194/bg-20-3449-2023, https://doi.org/10.5194/bg-20-3449-2023, 2023
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Intensifying wildfires are increasing pyrogenic organic matter (PyOM) production and its impact on water quality. Recent work indicates that PyOM may have a greater impact on aquatic biogeochemistry than previously assumed, driven by higher bioavailability. We provide a full assessment of the potential bioavailability of PyOM across its chemical spectrum. We indicate that PyOM can be actively transformed within the river corridor and, therefore, may be a growing source of riverine C emissions.
Nora Richter, Ellen C. Hopmans, Danica Mitrović, Pedro M. Raposeiro, Vítor Gonçalves, Ana C. Costa, Linda A. Amaral-Zettler, Laura Villanueva, and Darci Rush
Biogeosciences, 20, 2065–2098, https://doi.org/10.5194/bg-20-2065-2023, https://doi.org/10.5194/bg-20-2065-2023, 2023
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Andrea Scheibe, Carlos A. Sierra, and Marie Spohn
Biogeosciences, 20, 827–838, https://doi.org/10.5194/bg-20-827-2023, https://doi.org/10.5194/bg-20-827-2023, 2023
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Melissa Sophia Schwab, Hannah Gies, Chantal Valérie Freymond, Maarten Lupker, Negar Haghipour, and Timothy Ian Eglinton
Biogeosciences, 19, 5591–5616, https://doi.org/10.5194/bg-19-5591-2022, https://doi.org/10.5194/bg-19-5591-2022, 2022
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The majority of river studies focus on headwater or floodplain systems, while often neglecting intermediate river segments. Our study on the subalpine Sihl River bridges the gap between streams and lowlands and demonstrates that moderately steep river segments are areas of significant instream alterations, modulating the export of organic carbon over short distances.
Lisa Noll, Shasha Zhang, Qing Zheng, Yuntao Hu, Florian Hofhansl, and Wolfgang Wanek
Biogeosciences, 19, 5419–5433, https://doi.org/10.5194/bg-19-5419-2022, https://doi.org/10.5194/bg-19-5419-2022, 2022
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Cleavage of proteins to smaller nitrogen compounds allows microorganisms and plants to exploit the largest nitrogen reservoir in soils and is considered the bottleneck in soil organic nitrogen cycling. Results from soils covering a European transect show that protein turnover is constrained by soil geochemistry, shifts in climate and associated alterations in soil weathering and should be considered as a driver of soil nitrogen availability with repercussions on carbon cycle processes.
Muhammed Fatih Sert, Helge Niemann, Eoghan P. Reeves, Mats A. Granskog, Kevin P. Hand, Timo Kekäläinen, Janne Jänis, Pamela E. Rossel, Bénédicte Ferré, Anna Silyakova, and Friederike Gründger
Biogeosciences, 19, 2101–2120, https://doi.org/10.5194/bg-19-2101-2022, https://doi.org/10.5194/bg-19-2101-2022, 2022
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We investigate organic matter composition in the Arctic Ocean water column. We collected seawater samples from sea ice to deep waters at six vertical profiles near an active hydrothermal vent and its plume. In comparison to seawater, we found that the organic matter in waters directly affected by the hydrothermal plume had different chemical composition. We suggest that hydrothermal processes may influence the organic matter distribution in the deep ocean.
Charlotte Haugk, Loeka L. Jongejans, Kai Mangelsdorf, Matthias Fuchs, Olga Ogneva, Juri Palmtag, Gesine Mollenhauer, Paul J. Mann, P. Paul Overduin, Guido Grosse, Tina Sanders, Robyn E. Tuerena, Lutz Schirrmeister, Sebastian Wetterich, Alexander Kizyakov, Cornelia Karger, and Jens Strauss
Biogeosciences, 19, 2079–2094, https://doi.org/10.5194/bg-19-2079-2022, https://doi.org/10.5194/bg-19-2079-2022, 2022
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Buried animal and plant remains (carbon) from the last ice age were freeze-locked in permafrost. At an extremely fast eroding permafrost cliff in the Lena Delta (Siberia), we found this formerly frozen carbon well preserved. Our results show that ongoing degradation releases substantial amounts of this carbon, making it available for future carbon emissions. This mobilisation at the studied cliff and also similarly eroding sites bear the potential to affect rivers and oceans negatively.
Aleksandar I. Goranov, Andrew S. Wozniak, Kyle W. Bostick, Andrew R. Zimmerman, Siddhartha Mitra, and Patrick G. Hatcher
Biogeosciences, 19, 1491–1514, https://doi.org/10.5194/bg-19-1491-2022, https://doi.org/10.5194/bg-19-1491-2022, 2022
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Wildfire-derived molecules are ubiquitous in the aquatic environment, but their biological fate remains understudied. We have evaluated the compositional changes that occur to wildfire-derived molecules after incubation with soil microbes. We observe a significant degradation but also a production of numerous new labile molecules. Our results indicate that wildfire-derived molecules can be broken down and the carbon and nitrogen therein can be incorporated into microbial food webs.
Edgart Flores, Sebastian I. Cantarero, Paula Ruiz-Fernández, Nadia Dildar, Matthias Zabel, Osvaldo Ulloa, and Julio Sepúlveda
Biogeosciences, 19, 1395–1420, https://doi.org/10.5194/bg-19-1395-2022, https://doi.org/10.5194/bg-19-1395-2022, 2022
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In this study, we investigate the chemical diversity and abundance of microbial lipids as markers of organic matter sources in the deepest points of the Atacama Trench sediments and compare them to similar lipid stocks in shallower surface sediments and in the overlying water column. We evaluate possible organic matter provenance and some potential chemical adaptations of the in situ microbial community to the extreme conditions of high hydrostatic pressure in hadal realm.
Birgit Gaye, Niko Lahajnar, Natalie Harms, Sophie Anna Luise Paul, Tim Rixen, and Kay-Christian Emeis
Biogeosciences, 19, 807–830, https://doi.org/10.5194/bg-19-807-2022, https://doi.org/10.5194/bg-19-807-2022, 2022
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Amino acids were analyzed in a large number of samples of particulate and dissolved organic matter from coastal regions and the open ocean. A statistical analysis produced two new biogeochemical indicators. An indicator of sinking particle and sediment degradation (SDI) traces the degradation of organic matter from the surface waters into the sediments. A second indicator shows the residence time of suspended matter in the ocean (RTI).
Zoë R. van Kemenade, Laura Villanueva, Ellen C. Hopmans, Peter Kraal, Harry J. Witte, Jaap S. Sinninghe Damsté, and Darci Rush
Biogeosciences, 19, 201–221, https://doi.org/10.5194/bg-19-201-2022, https://doi.org/10.5194/bg-19-201-2022, 2022
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Anaerobic ammonium oxidation (anammox) is an important nitrogen-removal process in the ocean. We assess the distribution of bacteriohopanetetrol-x (BHT-x), used to trace past anammox, along a redox gradient in the water column of the Benguela upwelling system. BHT-x / BHT ratios of >0.18 correspond to the presence of living anammox bacteria and oxygen levels <50 μmol L−1. This allows for a more robust application of BHT-x to trace past marine anammox and deoxygenation in dynamic marine systems.
Jia-Jang Hung, Ching-Han Tung, Zong-Ying Lin, Yuh-ling Lee Chen, Shao-Hung Peng, Yen-Huei Lin, and Li-Shan Tsai
Biogeosciences, 18, 5141–5162, https://doi.org/10.5194/bg-18-5141-2021, https://doi.org/10.5194/bg-18-5141-2021, 2021
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We report measured active and passive fluxes and their controlling mechanisms in the northern South China Sea (NSCS). The total fluxes were higher than most reports in open oceans, indicating the significance of NSCS in atmospheric CO2 uptake and in storing that CO2 in the ocean’s interior. Winter cooling and extreme events enhanced nutrient availability and elevated fluxes. Global warming may have profound impacts on reducing ocean’s uptake and storage of CO2 in subtropical–tropical oceans.
Jens Daniel Müller, Bernd Schneider, Ulf Gräwe, Peer Fietzek, Marcus Bo Wallin, Anna Rutgersson, Norbert Wasmund, Siegfried Krüger, and Gregor Rehder
Biogeosciences, 18, 4889–4917, https://doi.org/10.5194/bg-18-4889-2021, https://doi.org/10.5194/bg-18-4889-2021, 2021
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Based on profiling pCO2 measurements from a field campaign, we quantify the biomass production of a cyanobacteria bloom in the Baltic Sea, the export of which would foster deep water deoxygenation. We further demonstrate how this biomass production can be accurately reconstructed from long-term surface measurements made on cargo vessels in combination with modelled temperature profiles. This approach enables a better understanding of a severe concern for the Baltic’s good environmental status.
Alexander Braun, Marina Spona-Friedl, Maria Avramov, Martin Elsner, Federico Baltar, Thomas Reinthaler, Gerhard J. Herndl, and Christian Griebler
Biogeosciences, 18, 3689–3700, https://doi.org/10.5194/bg-18-3689-2021, https://doi.org/10.5194/bg-18-3689-2021, 2021
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It is known that CO2 fixation by photoautotrophic organisms is the major sink from the atmosphere. While biologists are aware that CO2 fixation also occurs in heterotrophic organisms, this route of inorganic carbon, and its quantitative role, is hardly recognized in biogeochemistry. We demonstrate that a considerable amount of CO2 is fixed annually through anaplerotic reactions in heterotrophic organisms, and a significant quantity of inorganic carbon is temporally sequestered in biomass.
Jonathan H. Raberg, David J. Harning, Sarah E. Crump, Greg de Wet, Aria Blumm, Sebastian Kopf, Áslaug Geirsdóttir, Gifford H. Miller, and Julio Sepúlveda
Biogeosciences, 18, 3579–3603, https://doi.org/10.5194/bg-18-3579-2021, https://doi.org/10.5194/bg-18-3579-2021, 2021
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BrGDGT lipids are a proxy for temperature in lake sediments, but other parameters like pH can influence them, and seasonality can affect the temperatures they record. We find a warm-season bias at 43 new high-latitude sites. We also present a new method that deconvolves the effects of temperature, pH, and conductivity and generate global calibrations for these variables. Our study provides new paleoclimate tools, insight into brGDGTs at the biochemical level, and a new method for future study.
Charlotte L. Spencer-Jones, Erin L. McClymont, Nicole J. Bale, Ellen C. Hopmans, Stefan Schouten, Juliane Müller, E. Povl Abrahamsen, Claire Allen, Torsten Bickert, Claus-Dieter Hillenbrand, Elaine Mawbey, Victoria Peck, Aleksandra Svalova, and James A. Smith
Biogeosciences, 18, 3485–3504, https://doi.org/10.5194/bg-18-3485-2021, https://doi.org/10.5194/bg-18-3485-2021, 2021
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Long-term ocean temperature records are needed to fully understand the impact of West Antarctic Ice Sheet collapse. Glycerol dialkyl glycerol tetraethers (GDGTs) are powerful tools for reconstructing ocean temperature but can be difficult to apply to the Southern Ocean. Our results show active GDGT synthesis in relatively warm depths of the ocean. This research improves the application of GDGT palaeoceanographic proxies in the Southern Ocean.
Alec W. Armstrong, Leanne Powers, and Michael Gonsior
Biogeosciences, 18, 3367–3390, https://doi.org/10.5194/bg-18-3367-2021, https://doi.org/10.5194/bg-18-3367-2021, 2021
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Living things decay into organic matter, which can dissolve into water (like tea brewing). Tea receives its color by absorbing light. Similarly, this material absorbs light, which can then cause chemical reactions that change it. By measuring changes in these optical properties, we found that materials from some places are more sensitive to light than others. Comparing sensitivity to light helps us understand where these materials come from and what happens as they move through water.
Ben J. Fisher, Johan C. Faust, Oliver W. Moore, Caroline L. Peacock, and Christian März
Biogeosciences, 18, 3409–3419, https://doi.org/10.5194/bg-18-3409-2021, https://doi.org/10.5194/bg-18-3409-2021, 2021
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Organic carbon can be protected from microbial degradation in marine sediments through association with iron minerals on 1000-year timescales. Despite the importance of this carbon sink, our spatial and temporal understanding of iron-bound organic carbon interactions globally is poor. Here we show that caution must be applied when comparing quantification of iron-bound organic carbon extracted by different methods as the extraction strength and method specificity can be highly variable.
Mark A. Stevenson, Suzanne McGowan, Emma J. Pearson, George E. A. Swann, Melanie J. Leng, Vivienne J. Jones, Joseph J. Bailey, Xianyu Huang, and Erika Whiteford
Biogeosciences, 18, 2465–2485, https://doi.org/10.5194/bg-18-2465-2021, https://doi.org/10.5194/bg-18-2465-2021, 2021
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We link detailed stable isotope and biomarker analyses from the catchments of three Arctic upland lakes on Disko Island (West Greenland) to a recent dated sediment core to understand how carbon cycling has changed over the past ~500 years. We find that the carbon deposited in sediments in these upland lakes is predominately sourced from in-lake production due to the catchment's limited terrestrial vegetation and elevation and that recent increases in algal production link with climate change.
Nadine T. Smit, Laura Villanueva, Darci Rush, Fausto Grassa, Caitlyn R. Witkowski, Mira Holzheimer, Adriaan J. Minnaard, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 18, 1463–1479, https://doi.org/10.5194/bg-18-1463-2021, https://doi.org/10.5194/bg-18-1463-2021, 2021
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Soils from an everlasting fire (gas seep) in Sicily, Italy, reveal high relative abundances of novel uncultivated mycobacteria and unique 13C-depleted mycocerosic acids (multi-methyl branched fatty acids) close to the main gas seep. Our results imply that mycocerosic acids in combination with their depleted δ13C values offer a new biomarker tool to study the role of soil mycobacteria as hydrocarbon consumers in the modern and past global carbon cycle.
Marcus P. S. Badger
Biogeosciences, 18, 1149–1160, https://doi.org/10.5194/bg-18-1149-2021, https://doi.org/10.5194/bg-18-1149-2021, 2021
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Reconstructing ancient atmospheric CO2 is an important aim of palaeoclimate science in order to understand the Earth's climate system. One method, the alkenone proxy based on molecular fossils of coccolithophores, has been recently shown to be ineffective at low-to-moderate CO2 levels. In this paper I show that this is likely due to changes in the biogeochemistry of the coccolithophores when there is low carbon availability, but for much of the Cenozoic the alkenone proxy should have utility.
Loes G. J. van Bree, Francien Peterse, Allix J. Baxter, Wannes De Crop, Sigrid van Grinsven, Laura Villanueva, Dirk Verschuren, and Jaap S. Sinninghe Damsté
Biogeosciences, 17, 5443–5463, https://doi.org/10.5194/bg-17-5443-2020, https://doi.org/10.5194/bg-17-5443-2020, 2020
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Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are used as a paleothermometer based on their temperature dependence in global soils, but aquatic production complicates their use in lakes. BrGDGTs in the water column of Lake Chala, East Africa, respond to oxygen conditions and mixing. Changes in their signal can be linked to bacterial community composition rather than membrane adaptation to changing conditions. Their integrated signal in the sediment reflects mean air temperature.
Alexandra N. Loginova, Andrew W. Dale, Frédéric A. C. Le Moigne, Sören Thomsen, Stefan Sommer, David Clemens, Klaus Wallmann, and Anja Engel
Biogeosciences, 17, 4663–4679, https://doi.org/10.5194/bg-17-4663-2020, https://doi.org/10.5194/bg-17-4663-2020, 2020
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We measured dissolved organic carbon (DOC), nitrogen (DON) and matter (DOM) optical properties in pore waters and near-bottom waters of the eastern tropical South Pacific off Peru. The difference between diffusion-driven and net fluxes of DOC and DON and qualitative changes in DOM optical properties suggested active microbial utilisation of the released DOM at the sediment–water interface. Our results suggest that the sediment release of DOM contributes to microbial processes in the area.
Gerard J. M. Versteegh, Alexander J. P. Houben, and Karin A. F. Zonneveld
Biogeosciences, 17, 3545–3561, https://doi.org/10.5194/bg-17-3545-2020, https://doi.org/10.5194/bg-17-3545-2020, 2020
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Anoxic sediments mostly contain much more organic matter than oxic ones, and therefore organic matter in anoxic settings is often considered to be preserved better than in oxic settings. However, through the analysis of the same fossil dinoflagellate cyst species from both oxic and anoxic settings, we show that at a molecular level the preservation in the oxic sediments may be better since in the anoxic setting the cyst macromolecule has been altered by postdepositional modification.
Jingjing Guo, Miriam Glendell, Jeroen Meersmans, Frédérique Kirkels, Jack J. Middelburg, and Francien Peterse
Biogeosciences, 17, 3183–3201, https://doi.org/10.5194/bg-17-3183-2020, https://doi.org/10.5194/bg-17-3183-2020, 2020
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The fluxes of soil organic carbon (OC) transport from land to sea are poorly constrained, mostly due to the lack of a specific tracer for soil OC. Here we evaluate the use of specific molecules derived from soil bacteria as a tracer for soil OC in a small river catchment. We find that the initial soil signal is lost upon entering the aquatic environment. However, the local environmental history of the catchment is reflected by these molecules in the lake sediments that act as their sink.
Zhuo-Yi Zhu, Joanne Oakes, Bradley Eyre, Youyou Hao, Edwin Sien Aun Sia, Shan Jiang, Moritz Müller, and Jing Zhang
Biogeosciences, 17, 2473–2485, https://doi.org/10.5194/bg-17-2473-2020, https://doi.org/10.5194/bg-17-2473-2020, 2020
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Samples were collected in August 2016 in the Rajang River and its estuary, with tropical forest in the river basin and peatland in the estuary. Organic matter composition was influenced by transportation in the river basin, whereas peatland added clear biodegraded parts to the fluvial organic matter, which implies modification of the initial lability and/or starting points in the subsequent degradation and alternation processes after the organic matter enters the sea.
Wenjie Xiao, Yasong Wang, Yongsheng Liu, Xi Zhang, Linlin Shi, and Yunping Xu
Biogeosciences, 17, 2135–2148, https://doi.org/10.5194/bg-17-2135-2020, https://doi.org/10.5194/bg-17-2135-2020, 2020
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The hadal zone (6–11 km depth) is the least explored habitat on Earth. We studied microbial branched glycerol dialkyl glycerol tetraethers (brGDGTs) in the Challenger Deep, Mariana Trench. One unique feature is the strong predominance of 6-methyl brGDGT, which likely reflects an adaption of brGDGT-producing bacteria to alkaline seawater and low temperature. BrGDGTs, with elemental and isotopic data, suggest an autochthonous product for brGDGT. A new approach is proposed for brGDGT sourcing.
Yuge Bai, Edisson Subdiaga, Stefan B. Haderlein, Heike Knicker, and Andreas Kappler
Biogeosciences, 17, 683–698, https://doi.org/10.5194/bg-17-683-2020, https://doi.org/10.5194/bg-17-683-2020, 2020
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Biogeochemical processes of SOM are key for greenhouse gas emission and water quality. We extracted SOM by water or by NaOH–HCl under oxic–anoxic conditions. Chemical and anoxic extractions lead to higher SOM electron exchange capacities, resulting in stimulation of microbial Fe(III) reduction. Therefore, aqueous pH-neutral SOM extracts should be used to reflect environmental SOM redox processes, and artifacts of chemical extractions need to be considered when evaluating SOM redox processes.
Yan Shen, Volker Thiel, Pablo Suarez-Gonzalez, Sebastiaan W. Rampen, and Joachim Reitner
Biogeosciences, 17, 649–666, https://doi.org/10.5194/bg-17-649-2020, https://doi.org/10.5194/bg-17-649-2020, 2020
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Today, sterols are widespread in plants, animals, and fungi but are almost absent in the oldest rocks. Microbial mats, representing the earliest complex ecosystems on Earth, were omnipresent in Precambrian marine environments and may have degraded the sterols at that time. Here we analyze the distribution of sterols through a microbial mat. This provides insight into how variations in biological and nonbiological factors affect the preservation of sterols in modern and ancient microbial mats.
Sarah Coffinet, Travis B. Meador, Lukas Mühlena, Kevin W. Becker, Jan Schröder, Qing-Zeng Zhu, Julius S. Lipp, Verena B. Heuer, Matthew P. Crump, and Kai-Uwe Hinrichs
Biogeosciences, 17, 317–330, https://doi.org/10.5194/bg-17-317-2020, https://doi.org/10.5194/bg-17-317-2020, 2020
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This study deals with two membrane lipids called BDGTs and PDGTs. Membrane lipids are molecules forming the cell envelope of all organisms. Different organisms produce different lipids thus they can be used to detect the presence of specific organisms in the environment. We analyzed the structure of these new lipids and looked for potential producers. We found that they are likely made by microbes emitting methane below the sediment surface and could be used to track these specific microbes.
Ying Wu, Kun Zhu, Jing Zhang, Moritz Müller, Shan Jiang, Aazani Mujahid, Mohd Fakharuddin Muhamad, and Edwin Sien Aun Sia
Biogeosciences, 16, 4517–4533, https://doi.org/10.5194/bg-16-4517-2019, https://doi.org/10.5194/bg-16-4517-2019, 2019
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Our understanding of terrestrial organic matter (TOM) in tropical peat-draining rivers remains limited, especially in Southeast Asia. We explored the characteristics of TOM via bulk parameters and lignin phenols of sediment in Malaysia. This showed that the most important plant source of the organic matter in these rivers is woody angiosperm C3 plants with limited diagenetic alteration. This slower degradation of TOM may be a link to higher total nitrogen content, especially for the small river.
Caitlyn R. Witkowski, Sylvain Agostini, Ben P. Harvey, Marcel T. J. van der Meer, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 16, 4451–4461, https://doi.org/10.5194/bg-16-4451-2019, https://doi.org/10.5194/bg-16-4451-2019, 2019
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Carbon dioxide concentrations (pCO2) in the atmosphere play an integral role in Earth system dynamics, especially climate. Past climates help us understand future ones, but reconstructing pCO2 over the geologic record remains a challenge. This research demonstrates new approaches for exploring past pCO2 via the carbon isotope fractionation in general algal lipids, which we test over a high CO2 gradient from a naturally occurring CO2 seep.
Yongli Zhou, Patrick Martin, and Moritz Müller
Biogeosciences, 16, 2733–2749, https://doi.org/10.5194/bg-16-2733-2019, https://doi.org/10.5194/bg-16-2733-2019, 2019
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We found that peatlands in coastal Sarawak, Borneo, export extremely humified organic matter, which dominates the riverine organic matter pool and conservatively mixes with seawater, while the freshly produced fraction is low and stable in concentration at all salinities. We estimated that terrigenous fractions, which showed high photolability, still account for 20 % of the coastal dissolved organic carbon pool, implying the importance of peat-derived organic matter in the coastal carbon cycle.
Kristin Doering, Claudia Ehlert, Philippe Martinez, Martin Frank, and Ralph Schneider
Biogeosciences, 16, 2163–2180, https://doi.org/10.5194/bg-16-2163-2019, https://doi.org/10.5194/bg-16-2163-2019, 2019
Alexandra N. Loginova, Sören Thomsen, Marcus Dengler, Jan Lüdke, and Anja Engel
Biogeosciences, 16, 2033–2047, https://doi.org/10.5194/bg-16-2033-2019, https://doi.org/10.5194/bg-16-2033-2019, 2019
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High primary production in the Peruvian upwelling system is followed by rapid heterotrophic utilization of organic matter and supports the formation of one of the most intense oxygen minimum zones (OMZs) in the world. Here, we estimated vertical fluxes of oxygen and dissolved organic matter (DOM) from the surface to the OMZ. Our results suggest that DOM remineralization substantially reduces oxygen concentration in the upper water column and controls the shape of the upper oxycline.
Carolina Cisternas-Novoa, Frédéric A. C. Le Moigne, and Anja Engel
Biogeosciences, 16, 927–947, https://doi.org/10.5194/bg-16-927-2019, https://doi.org/10.5194/bg-16-927-2019, 2019
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We investigate the composition and vertical fluxes of POM in two deep basins of the Baltic Sea (GB: Gotland Basin and LD: Landsort Deep). The two basins showed different O2 regimes resulting from the intrusion of oxygen-rich water from the North Sea that ventilated the deep waters in GB, but not in LD.
In GB, O2 intrusions lead to a high abundance of manganese oxides that aggregate with POM, altering its composition and vertical flux and contributing to a higher POC transfer efficiency in GB.
Cited articles
Aitkenhead, J. A., McDowell, W. H., and Neff, J. C.: Sources, production, and regulation of allochthonous dissolved organic matter inputs to surface waters, in: Aquatic Ecosystems: Interactivity of Dissolved Organic Matter, edited by: Findlay, S. E. G. and Sinsabaugh, R. L., Academic Press, San Diego, 25–70, 2003.
Amon, R. M. W. and Benner, R.: Photochemical and microbial consumption of dissolved organic carbon and dissolved oxygen in the Amazon River system, Geochim. Cosmochim. Ac., 60, 1783–1792, 1996.
Aufdenkampe, A. K., Mayorga, E., Raymond, P. A., Melack, J. M., Doney, S. C., Alin, S. R., Aalto, R. E., and Yoo, K.: Riverine coupling of biogeochemical cycles between land, oceans, and atmosphere, Front. Ecol. Environ., 9, 53–60, 2011.
Avery Jr., G. B., Willey, J. D., Kieber, R. J., Shank, G. C., and Whitehead, R. F.: Flux and bioavailability of Cape Fear River and rainwater dissolved organic carbon to Long Bay, southeastern United States, Global Biogeochem. Cy., 17, 1042, https://doi.org/10.1029/2002GB001964, 2003.
Bauer, J. E. and Bianchi, T. S.: Dissolved organic carbon cycling and transformation, in: Treatise on estuarine and coastal science, edited by: Wolanski, E. and McLusky, D. S., Academic Press, Sam Diego, 5, 7–67, 2011.
Bauer, J. E., Druffel, E. R. M., Wolgast, D. M., and Griffin, S.: Temporal and regional variability in sources and cycling of DOC and POC in the northwest Atlantic continental shelf and slope, Deep-Sea Res. Pt. II, 49, 4387–4419, 2002.
Bouman, H. A., Nakane, T., Oka, K., Nakata, K., Kurita, K., Sathyendranath, S., and Platt, T.: Environmental controls on phytoplankton production in coastal ecosystems: A case study from Tokyo Bay, Estuar. Coast. Shelf S., 87, 63–72, 2010.
Bureau of Sewerage: Management plan 2013, Bureau of Sewerage, Tokyo Metropolitan Government, 117 pp., 2013 (in Japanese).
Carlson, C. A.: Production and removal processes, in: Biogeochemistry of Marine Dissolved Organic Matter, edited by: Hansell, D. A. and Carlson, C. A., Academic Press, San Diego, 91–151, 2002.
Cauwet, G.: DOM in the coastal zone, in: Biogeochemistry of Marine Dissolved Organic Matter, edited by: Hansell, D. A. and Carlson, C. A., Academic Press, San Diego, 579–609, 2002.
Chin, W. C., Orellana, M. V., and Verdugo, P.: Spontaneous assembly of marine dissolved organic matter into polymer gels, Nature, 391, 568–572, 1998.
Cole, J. J., Prairie, Y. T., Caraco, N. F., McDowell, W. H., Tranvik, L. J., Striegl, R. G., Duarte, C. M., Kortelainen, P., Downing, J. A., Middelburg, J. J., and Melack, J.: Plumbing the global carbon cycle: integrating inland waters into the terrestrial carbon budget, Ecosystems, 10, 171–184, 2007.
Dai, M., Yin, Z., Meng, F., Liu, Q., and Cai, W. J.: Spatial distribution of riverine DOC inputs to the ocean: an updated global synthesis, Current Opinion in Environmental Sustainability, 4, 170–178, 2012.
Druffel, E. R. M., Williams, P. M., Bauer, J. E., and Ertel, J. R.: Cycling of dissolved and particulate organic matter in the open ocean, J. Geophys. Res., 97, 15639–15659, 1992.
Hansell, D. A.: Recalcitrant dissolved organic carbon fractions, Annu. Rev. Mar. Sci., 5, 3.1–3.25, 2013.
Hansell, D. A., Carlson, C. A., Repeta, D. J., and Schlitzer, R.: Dissolved organic matter in the ocean: A controversy stimulates new insights, Oceanography, 22, 202–211, 2009.
Hedges, J., Keil, R. G., and Benner, R.: What happens to terrestrial organic matter in the ocean?, Org. Geochem., 27, 195–212, 1997.
Hernes, P. J. and Benner, R.: Terrigenous organic matter sources and reactivity in the North Atlantic Ocean and a comparison to the Arctic and Pacific oceans, Mar. Chem., 100, 66–79, 2006.
Japan Sewage Works Association: Sewage statistics, Japan Sewage Works Association, Tokyo, 2010 (in Japanese).
Kadlec, R. H. and Wallace, S. D.: Treatment wetlands second edition, CRC Press, Boca Raton, Florida, 1000 pp., 2008.
Kaushal, S. S. and Belt, K. T.: The urban watershed continuum: evolving spatial and temporal dimensions, Urban Ecosystems, 15, 409–435, 2012.
Kerner, M., Hohenberg, H., Ertl, S., Reckermann, M., and Spitzy, A.: Self-organization of dissolved organic matter to micelle-like microparticles in river water, Nature, 422, 150–154, 2003.
Kragh, T. and Søndergaard, M.: Production and decomposition of new DOC by marine plankton communities: carbohydrates, refractory components and nutrient limitation, Biogeochemistry, 96, 177–187, 2009.
Lønborg, C. and Álvarez-Salgado, X. A.: Recycling versus export of bioavailable dissolved organic matter in the coastal ocean and efficiency of the continental shelf pump, Global Biogeochem. Cy., 26, GB3018, https://doi.org/10.1029/2012GB004353, 2012.
Lønborg, C., Davidson, K., Álvarez-Salgado, X. A., and Miller, A. E. J.: Bioavailability and bacterial degradation rates of dissolved organic matter in a temperate coastal area during an annual cycle, Mar. Chem., 113, 219–226, 2009.
Ludwig, W., Probst, J. L., and Kempe, S.: Predicting the oceanic input of organic carbon by continental erosion, Global Biogeochem. Cy., 10, 23–41, 1996.
Maki, K., Kim, C., Yoshimizu, C., Tayasu, I., Miyajima, T., and Nagata, T.: Autochthonous origin of semi-labile dissolved organic carbon in a large monomictic lake (Lake Biwa): carbon stable isotopic evidence, Limnology, 11, 143–153, 2010.
Meybeck, M.: C, N, P and S in rivers: From sources to global inputs, in: Interactions of C, N, P and S Biogeochemical Cycles and Global Change, edited by: Wollast, R., Mackenzie, F. T., and Chou, L., Springer-Verlag, Berlin, 163–193, 1993.
Meyers-Schulte, K. J. and Hedges, J. I.: Molecular evidence for a terrestrial component of organic matter dissolved in ocean water, Nature, 321, 61–63, 1986.
Moran, M. A. and Zepp, R. G.: Role of photoreactions in the formation of biologically labile compounds from dissolved organic matter, Limnol. Oceanogr., 42, 1307–1316, 1997.
Moran, M. A., Sheldon Jr., W. M., and Sheldon, J. E.: Biodegradation of riverine dissolved organic carbon in five estuaries of the southeastern United States, Estuaries, 22, 55–64, 1999.
Mulholland, P. J.: Formation of particulate organic carbon in water from a southeastern swamp-stream, Limnol. Oceanogr., 26, 790–795, 1981.
Nakamura, T., Osaka, K., Hiraga, Y., and Kazama, F.: Nitrogen and oxygen isotope composition of nitrate in stream water of Fuji River basin, J. Jpn. Assoc. Hydrol. Sci., 41, 79–89, 2011 (in Japanese with English abstract).
National Institute for Land and Infrastructure Management: Information of port environment, 2004, available at: http://www.nilim.go.jp/, last access: 25 June 2013.
Nellemann, C., Hain, S., and Alder, J.: Rapid response assessment in dead water: Merging of climate change with pollution, over-harvest, and infestations in the world's fishing grounds, United Nations Environment Programme, 61 pp., 2008.
Nihei, Y., Takamura, T., and Watanabe, N.: Issues on discharge monitoring in main influence rivers into Tokyo Bay, Journal of JSCE, 54, 1226–1230, 2007a (in Japanese with English abstract).
Nihei, Y., Ehara, K., Usuda, M., Sakai, A., and Shigeta, K.: Water quality and pollutant load in the Edo River, Ara River and Tama River, Journal of JSCE, 54, 1221–1225, 2007b (in Japanese with English abstract).
Obernosterer, I. and Benner, R.: Competition between biological and photochemical processes in the mineralization of dissolved organic carbon, Limnol. Oceanogr., 49, 117–124, 2004.
Ogawa, H. and Ogura, N.: Source and behavior of organic carbon of seawater in Tokyo Bay, Chikyukagaku, 24, 27–41, 1990 (in Japanese with English abstract).
Ogawa, H. and Ogura, N.: Comparison of two methods for measuring dissolved organic carbon in sea water, Nature, 356, 696–698, 1992.
Ogura, N.: Further studies on decomposition of dissolved organic matter in coastal seawater, Mar. Biol., 31, 101–111, 1975.
Okada, T., Takao, T., Nakayama, K., and Furukawa, K.: Change in freshwater discharge and residence time of seawater in Tokyo Bay, Journal of JSCE, 63, 67–72, 2007 (in Japanese with English abstract).
Opsahl, S. and Benner, R.: Distribution and cycling of terrigenous dissolved organic matter in the ocean, Nature, 386, 480–482, 1997.
Raymond, P. A. and Bauer, J. E.: Bacterial consumption of DOC during transport through a temperate estuary, Aquat. Microb. Ecol., 22, 1–12, 2000.
Raymond, P. A. and Bauer, J. E.: Riverine export of aged terrestrial organic matter to the North Atlantic Ocean, Nature, 409, 497–500, 2001.
Redfield, A. C., Ketchum, B. H., and Richards, F. A.: The influence of organisms on the composition of sea-water, in: The Sea, edited by: Hill, M. N., Interscience, New York, 26–77, 1963.
Regnier, P., Friedlingstein, P., Ciais, P., Mackenzie, F. T., Gruber, N., Janssens, I. A., Laruelle, G. G., Lauerwald, R., Luyssaert, S., Andersson, A. J., Arndt, S., Arnosti, C., Borges, A. V., Dale, A. W., Gallego-Sala, A., Goddéris, Y., Goossens, N., Hartmann, J., Heinze, C., Ilyina, T., Joos, F., LaRowe, D. E., Leifeld, J., Meysman, F. J. R., Munhoven, G., Raymond, P. A., Spahni, R., Suntharalingam, P., and Thullner, M.: Anthropogenic perturbation of the carbon fluxes from land to ocean, Nat. Geosci., 6, 597–607, 2013.
Servais, P., Barillier, A., and Garnier, J.: Determination of the biodegradable fraction of dissolved and particulate organic carbon in waters, Ann. Limnol.-Int. J. Lim., 31, 75–80, 1995.
Servais, P., Garnier, J., Demarteau, N., Brion, N., and Billen, G.: Supply of organic matter and bacteria to aquatic ecosystems through waste water effluents, Water Res., 33, 3521–3531, 1999.
Sholkovitz, E. R.: Flocculation of dissolved organic and inorganic matter during the mixing of river water and seawater, Geochim. Cosmochim. Ac., 40, 831–845, 1976.
Suzuki, R. and Ishimaru, T.: An improved method for the determination of phytoplankton chlorophyll using N, N-Dimethylformamide, Journal of the Oceanographical Society of Japan, 46, 190–194, 1990.
Takada, H., Ishiwatari, R., and Ogura, N.: Distribution of linear alkylbenzenes (LABs) and linear alkylbenzene sulphonates (LAS) in Tokyo Bay sediments, Estuar. Coast. Shelf S., 35, 141–156, 1992.
Tanaka, Y., Ogawa, H., and Miyajima, T.: Production and bacterial decomposition of dissolved organic matter in a fringing coral reef, J. Oceanogr., 67, 427–437, 2011.
Tranvik, L. and Höfle, M. G.: Bacterial growth in mixed cultures on dissolved organic carbon from humic and clear waters, Appl. Environ. Microb., 53, 482–488, 1987.
Yamaguchi, Y. and Shibata, Y.: Recent status of primary production in Tokyo Bay, Bull. Coast. Oceanogr., 16, 106–111, 1979 (in Japanese).
Yamaguchi, Y., Satoh, H., and Aruga, Y.: Seasonal changes of organic carbon and nitrogen production by phytoplankton in the estuary of river Tamagawa, Mar. Pollut. Bull., 23, 723–725, 1991.
Yamashita, Y., Kloeppel, B. D., Knoepp, J., Zausen, G. L., and Jaffé, R.: Effect of watershed history on dissolved organic matter characteristics in headwater streams, Ecosystems, 14, 1110–1122, 2011.
Yanagi, T., Saino, T., Ishimaru, T., and Uye, S.: A carbon budget in Tokyo Bay, J. Oceanogr., 49, 249–256, 1993.
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