Articles | Volume 15, issue 7
https://doi.org/10.5194/bg-15-1969-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-15-1969-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
04 Apr 2018
Research article |
| 04 Apr 2018
Substrate potential of last interglacial to Holocene permafrost organic matter for future microbial greenhouse gas production
Janina G. Stapel
GFZ, German Research Centre for Geoscience, Helmholtz Centre Potsdam,
Organic Geochemistry, Telegrafenberg, 14473 Potsdam, Germany
Georg Schwamborn
Alfred Wegener Institute, Helmholtz Centre for Polar and Marine
Research, Department of Periglacial Research, Telegrafenberg, A43, 14473
Potsdam, Germany
Lutz Schirrmeister
Alfred Wegener Institute, Helmholtz Centre for Polar and Marine
Research, Department of Periglacial Research, Telegrafenberg, A43, 14473
Potsdam, Germany
Brian Horsfield
GFZ, German Research Centre for Geoscience, Helmholtz Centre Potsdam,
Organic Geochemistry, Telegrafenberg, 14473 Potsdam, Germany
Kai Mangelsdorf
CORRESPONDING AUTHOR
GFZ, German Research Centre for Geoscience, Helmholtz Centre Potsdam,
Organic Geochemistry, Telegrafenberg, 14473 Potsdam, Germany
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Frieda P. Giest, Maren Jenrich, Guido Grosse, Benjamin M. Jones, Kai Mangelsdorf, Torben Windirsch, and Jens Strauss
Biogeosciences, 22, 2871–2887, https://doi.org/10.5194/bg-22-2871-2025, https://doi.org/10.5194/bg-22-2871-2025, 2025
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Climate warming causes permafrost to thaw, releasing greenhouse gases and affecting ecosystems. We studied sediments from Arctic coastal landscapes, including land, lakes, lagoons, and the ocean, finding that organic carbon storage and quality vary with landscape features and saltwater influence. Freshwater and land areas store more carbon, while saltwater reduces its quality. These findings improve predictions of Arctic responses to climate change and their impact on global carbon cycling.
Felix L. Arens, Alessandro Airo, Christof Sager, Hans-Peter Grossart, Kai Mangelsdorf, Rainer U. Meckenstock, Mark Pannekens, Philippe Schmitt-Kopplin, Jenny Uhl, Bernardita Valenzuela, Pedro Zamorano, Luca Zoccarato, and Dirk Schulze-Makuch
Biogeosciences, 21, 5305–5320, https://doi.org/10.5194/bg-21-5305-2024, https://doi.org/10.5194/bg-21-5305-2024, 2024
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We studied unique nitrate-rich soils in the hyperarid Atacama Desert that form brines at night under high relative humidity. Despite providing water for microorganisms, these soils exhibit extremely low microbial activity, indicating that the high nitrate levels inhibit microbial life. On the other hand, enriched organic matter indicates their potential preservation. This research helps to understand the limits of life in extreme environments and aids in the search for signs of life on Mars.
Lutz Schirrmeister, Margret C. Fuchs, Thomas Opel, Andrei Andreev, Frank Kienast, Andrea Schneider, Larisa Nazarova, Larisa Frolova, Svetlana Kuzmina, Tatiana Kuznetsova, Vladimir Tumskoy, Heidrun Matthes, Gerit Lohmann, Guido Grosse, Viktor Kunitsky, Hanno Meyer, Heike H. Zimmermann, Ulrike Herzschuh, Thomas Boehmer, Stuart Umbo, Sevi Modestou, Sebastian F. M. Breitenbach, Anfisa Pismeniuk, Georg Schwamborn, Stephanie Kusch, and Sebastian Wetterich
Clim. Past Discuss., https://doi.org/10.5194/cp-2024-74, https://doi.org/10.5194/cp-2024-74, 2024
Revised manuscript accepted for CP
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The strong ecosystem response to the Last Interglacial warming, reflected in the high diversity of proxies, shows the sensitivity of permafrost regions to rising temperatures. In particular, the development of thermokarst landscapes created a mosaic of terrestrial, wetland, and aquatic habitats, fostering an increase in biodiversity. This biodiversity is evident in the rich variety of terrestrial insects, vegetation, and aquatic invertebrates preserved in these deposits.
Loeka L. Jongejans, Kai Mangelsdorf, Cornelia Karger, Thomas Opel, Sebastian Wetterich, Jérémy Courtin, Hanno Meyer, Alexander I. Kizyakov, Guido Grosse, Andrei G. Shepelev, Igor I. Syromyatnikov, Alexander N. Fedorov, and Jens Strauss
The Cryosphere, 16, 3601–3617, https://doi.org/10.5194/tc-16-3601-2022, https://doi.org/10.5194/tc-16-3601-2022, 2022
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Large parts of Arctic Siberia are underlain by permafrost. Climate warming leads to permafrost thaw. At the Batagay megaslump, permafrost sediments up to ~ 650 kyr old are exposed. We took sediment samples and analysed the organic matter (e.g. plant remains). We found distinct differences in the biomarker distributions between the glacial and interglacial deposits with generally stronger microbial activity during interglacial periods. Further permafrost thaw enhances greenhouse gas emissions.
Charlotte Haugk, Loeka L. Jongejans, Kai Mangelsdorf, Matthias Fuchs, Olga Ogneva, Juri Palmtag, Gesine Mollenhauer, Paul J. Mann, P. Paul Overduin, Guido Grosse, Tina Sanders, Robyn E. Tuerena, Lutz Schirrmeister, Sebastian Wetterich, Alexander Kizyakov, Cornelia Karger, and Jens Strauss
Biogeosciences, 19, 2079–2094, https://doi.org/10.5194/bg-19-2079-2022, https://doi.org/10.5194/bg-19-2079-2022, 2022
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Buried animal and plant remains (carbon) from the last ice age were freeze-locked in permafrost. At an extremely fast eroding permafrost cliff in the Lena Delta (Siberia), we found this formerly frozen carbon well preserved. Our results show that ongoing degradation releases substantial amounts of this carbon, making it available for future carbon emissions. This mobilisation at the studied cliff and also similarly eroding sites bear the potential to affect rivers and oceans negatively.
Michael Krautblatter, Lutz Schirrmeister, and Josefine Lenz
Polarforschung, 89, 69–71, https://doi.org/10.5194/polf-89-69-2021, https://doi.org/10.5194/polf-89-69-2021, 2021
Sebastian Wetterich, Alexander Kizyakov, Michael Fritz, Juliane Wolter, Gesine Mollenhauer, Hanno Meyer, Matthias Fuchs, Aleksei Aksenov, Heidrun Matthes, Lutz Schirrmeister, and Thomas Opel
The Cryosphere, 14, 4525–4551, https://doi.org/10.5194/tc-14-4525-2020, https://doi.org/10.5194/tc-14-4525-2020, 2020
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In the present study, we analysed geochemical and sedimentological properties of relict permafrost and ground ice exposed at the Sobo-Sise Yedoma cliff in the eastern Lena delta in NE Siberia. We obtained insight into permafrost aggradation and degradation over the last approximately 52 000 years and the climatic and morphodynamic controls on regional-scale permafrost dynamics of the central Laptev Sea coastal region.
Arthur Monhonval, Sophie Opfergelt, Elisabeth Mauclet, Benoît Pereira, Aubry Vandeuren, Guido Grosse, Lutz Schirrmeister, Matthias Fuchs, Peter Kuhry, and Jens Strauss
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2020-359, https://doi.org/10.5194/essd-2020-359, 2020
Preprint withdrawn
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With global warming, ice-rich permafrost soils expose organic carbon to microbial degradation and unlock mineral elements as well. Interactions between mineral elements and organic carbon may enhance or mitigate microbial degradation. Here, we provide a large scale ice-rich permafrost mineral concentrations assessment and estimates of mineral element stocks in those deposits. Si is the most abundant mineral element and Fe and Al are present in the same order of magnitude as organic carbon.
Georg Schwamborn, Kai Hartmann, Bernd Wünnemann, Wolfgang Rösler, Annette Wefer-Roehl, Jörg Pross, Marlen Schlöffel, Franziska Kobe, Pavel E. Tarasov, Melissa A. Berke, and Bernhard Diekmann
Solid Earth, 11, 1375–1398, https://doi.org/10.5194/se-11-1375-2020, https://doi.org/10.5194/se-11-1375-2020, 2020
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We use a sediment core from the Gobi Desert (Ejina Basin, NW China) to illustrate the landscape history of the area. During 2.5 million years a sediment package of 223 m thickness has been accumulated. Various sediment types document that the area turned from a playa environment (shallow water environment with multiple flooding events) to an alluvial–fluvial environment after the arrival of the Heihe in the area. The river has been diverted due to tectonics.
Torben Windirsch, Guido Grosse, Mathias Ulrich, Lutz Schirrmeister, Alexander N. Fedorov, Pavel Y. Konstantinov, Matthias Fuchs, Loeka L. Jongejans, Juliane Wolter, Thomas Opel, and Jens Strauss
Biogeosciences, 17, 3797–3814, https://doi.org/10.5194/bg-17-3797-2020, https://doi.org/10.5194/bg-17-3797-2020, 2020
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To extend the knowledge on circumpolar deep permafrost carbon storage, we examined two deep permafrost deposit types (Yedoma and alas) in central Yakutia. We found little but partially undecomposed organic carbon as a result of largely changing sedimentation processes. The carbon stock of the examined Yedoma deposits is about 50 % lower than the general Yedoma domain mean, implying a very hetererogeneous Yedoma composition, while the alas is approximately 80 % below the thermokarst deposit mean.
Lutz Schirrmeister, Elisabeth Dietze, Heidrun Matthes, Guido Grosse, Jens Strauss, Sebastian Laboor, Mathias Ulrich, Frank Kienast, and Sebastian Wetterich
E&G Quaternary Sci. J., 69, 33–53, https://doi.org/10.5194/egqsj-69-33-2020, https://doi.org/10.5194/egqsj-69-33-2020, 2020
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Late Pleistocene Yedoma deposits of Siberia and Alaska are prone to degradation with warming temperatures.
Multimodal grain-size distributions of >700 samples indicate varieties of sediment production, transport, and deposition.
These processes were disentangled using robust endmember modeling analysis.
Nine robust grain-size endmembers characterize these deposits.
The data set was finally classified using cluster analysis.
The polygenetic Yedoma origin is proved.
Elisabeth Dietze, Kai Mangelsdorf, Andrei Andreev, Cornelia Karger, Laura T. Schreuder, Ellen C. Hopmans, Oliver Rach, Dirk Sachse, Volker Wennrich, and Ulrike Herzschuh
Clim. Past, 16, 799–818, https://doi.org/10.5194/cp-16-799-2020, https://doi.org/10.5194/cp-16-799-2020, 2020
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Long-term climate change impacts on fire, vegetation and permafrost in the Arctic are uncertain. Here, we show the high potential of organic compounds from low-temperature biomass burning to serve as proxies for surface fires in lake deposits. During warm periods of the last 430 000 years, surface fires are closely linked to the larch taiga forest with its moss–lichen ground vegetation that isolates the permafrost. They have reduced in warm–wet, spruce–dominated and cool–dry steppe environments.
Nikita Demidov, Sebastian Wetterich, Sergey Verkulich, Aleksey Ekaykin, Hanno Meyer, Mikhail Anisimov, Lutz Schirrmeister, Vasily Demidov, and Andrew J. Hodson
The Cryosphere, 13, 3155–3169, https://doi.org/10.5194/tc-13-3155-2019, https://doi.org/10.5194/tc-13-3155-2019, 2019
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As Norwegian geologist Liestøl (1996) recognised,
in connection with formation of pingos there are a great many unsolved questions. Drillings and temperature measurements through the pingo mound and also through the surrounding permafrost are needed before the problems can be better understood. To shed light on pingo formation here we present the results of first drilling of pingo on Spitsbergen together with results of detailed hydrochemical and stable-isotope studies of massive-ice samples.
Boris K. Biskaborn, Larisa Nazarova, Lyudmila A. Pestryakova, Liudmila Syrykh, Kim Funck, Hanno Meyer, Bernhard Chapligin, Stuart Vyse, Ruslan Gorodnichev, Evgenii Zakharov, Rong Wang, Georg Schwamborn, Hannah L. Bailey, and Bernhard Diekmann
Biogeosciences, 16, 4023–4049, https://doi.org/10.5194/bg-16-4023-2019, https://doi.org/10.5194/bg-16-4023-2019, 2019
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To better understand time-series data in lake sediment cores in times of rapidly changing climate, we study within-lake spatial variabilities of environmental indicator data in 38 sediment surface samples along spatial habitat gradients in the boreal deep Lake Bolshoe Toko (Russia). Our methods comprise physicochemical as well as diatom and chironomid analyses. Species diversities vary according to benthic niches, while abiotic proxies depend on river input, water depth, and catchment lithology.
Julia Mitzscherling, Fabian Horn, Maria Winterfeld, Linda Mahler, Jens Kallmeyer, Pier P. Overduin, Lutz Schirrmeister, Matthias Winkel, Mikhail N. Grigoriev, Dirk Wagner, and Susanne Liebner
Biogeosciences, 16, 3941–3958, https://doi.org/10.5194/bg-16-3941-2019, https://doi.org/10.5194/bg-16-3941-2019, 2019
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Permafrost temperatures increased substantially at a global scale, potentially altering microbial assemblages involved in carbon mobilization before permafrost thaws. We used Arctic Shelf submarine permafrost as a natural laboratory to investigate the microbial response to long-term permafrost warming. Our work shows that millennia after permafrost warming by > 10 °C, microbial community composition and population size reflect the paleoenvironment rather than a direct effect through warming.
Thomas Opel, Julian B. Murton, Sebastian Wetterich, Hanno Meyer, Kseniia Ashastina, Frank Günther, Hendrik Grotheer, Gesine Mollenhauer, Petr P. Danilov, Vasily Boeskorov, Grigoriy N. Savvinov, and Lutz Schirrmeister
Clim. Past, 15, 1443–1461, https://doi.org/10.5194/cp-15-1443-2019, https://doi.org/10.5194/cp-15-1443-2019, 2019
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To reconstruct past winter climate, we studied ice wedges at two sites in the Yana Highlands, interior Yakutia (Russia), the most continental region of the Northern Hemisphere. Our ice wedges of the upper ice complex unit of the Batagay megaslump and a river terrace show much more depleted stable-isotope compositions than other study sites in coastal and central Yakutia, reflecting lower winter temperatures and a higher continentality of the study region during Marine Isotope Stages 3 and 1.
Loeka L. Jongejans, Jens Strauss, Josefine Lenz, Francien Peterse, Kai Mangelsdorf, Matthias Fuchs, and Guido Grosse
Biogeosciences, 15, 6033–6048, https://doi.org/10.5194/bg-15-6033-2018, https://doi.org/10.5194/bg-15-6033-2018, 2018
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Arctic warming mobilizes belowground organic matter in northern high latitudes. This study focused on the size of organic carbon pools and organic matter quality in ice-rich permafrost on the Baldwin Peninsula, West Alaska. We analyzed biogeochemistry and found that three-quarters of the carbon is stored in degraded permafrost deposits. Nonetheless, using biomarker analyses, we showed that the organic matter in undisturbed yedoma permafrost has a higher potential for decomposition.
Josefine Walz, Christian Knoblauch, Ronja Tigges, Thomas Opel, Lutz Schirrmeister, and Eva-Maria Pfeiffer
Biogeosciences, 15, 5423–5436, https://doi.org/10.5194/bg-15-5423-2018, https://doi.org/10.5194/bg-15-5423-2018, 2018
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We investigate potential CO2 and CH4 production in degrading ice-rich permafrost in northeastern Siberia, deposited under different climatic conditions. With laboratory incubations, it could be shown that Late Pleistocene yedoma deposits generally produced more CO2 than Holocene deposits. Thus, OM decomposability needs to be interpreted against the paleoenvironmental background. However, OM decomposability cannot be generalized solely based on the stratigraphic position.
Kseniia Ashastina, Lutz Schirrmeister, Margret Fuchs, and Frank Kienast
Clim. Past, 13, 795–818, https://doi.org/10.5194/cp-13-795-2017, https://doi.org/10.5194/cp-13-795-2017, 2017
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We present the first detailed description and sedimentological analyses of an 80 m permafrost sequence exposed in a mega-thaw slump near Batagay in the Yana Highlands, Russia, and attempt to deduce its genesis. First dating results (14C, OSL) show that the sequence represents a continental climate record spanning from the Middle Pleistocene to the Holocene. We suggest that the characteristics of the studied deposits are a result of various seasonally controlled climatically induced processes.
Sebastian Westermann, Maria Peter, Moritz Langer, Georg Schwamborn, Lutz Schirrmeister, Bernd Etzelmüller, and Julia Boike
The Cryosphere, 11, 1441–1463, https://doi.org/10.5194/tc-11-1441-2017, https://doi.org/10.5194/tc-11-1441-2017, 2017
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We demonstrate a remote-sensing-based scheme estimating the evolution of ground temperature and active layer thickness by means of a ground thermal model. A comparison to in situ observations from the Lena River delta in Siberia indicates that the model is generally capable of reproducing the annual temperature regime and seasonal thawing of the ground. The approach could hence be a first step towards remote detection of ground thermal conditions in permafrost areas.
Thomas Opel, Sebastian Wetterich, Hanno Meyer, Alexander Y. Dereviagin, Margret C. Fuchs, and Lutz Schirrmeister
Clim. Past, 13, 587–611, https://doi.org/10.5194/cp-13-587-2017, https://doi.org/10.5194/cp-13-587-2017, 2017
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We studied late Quaternary permafrost at the Oyogos Yar coast (Dmitry Laptev Strait) to reconstruct palaeoclimate and palaeonvironmental conditions in the Northeast Siberian Arctic. Our ice-wedge stable isotope record, combined with data from Bol'shoy Lyakhovsky Island, indicates coldest winter temperatures during MIS5 and MIS2, warmest conditions during the Holocene, i.e. today, and non-stable winter climate during MIS3. New IRSL ages reveal high climate variability during MIS5.
Lutz Schirrmeister, Georg Schwamborn, Pier Paul Overduin, Jens Strauss, Margret C. Fuchs, Mikhail Grigoriev, Irina Yakshina, Janet Rethemeyer, Elisabeth Dietze, and Sebastian Wetterich
Biogeosciences, 14, 1261–1283, https://doi.org/10.5194/bg-14-1261-2017, https://doi.org/10.5194/bg-14-1261-2017, 2017
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We investigate late Pleistocene permafrost at the Buor Khaya Peninsula (Laptev Sea, Siberia) for cryolithological, geochemical, and geochronological parameters. The sequences were composed of ice-oversaturated silts and fine-grained sands with 0.2 to 24 wt% of organic matter. The deposition was between 54.1 and 9.7 kyr BP. Due to coastal erosion, the biogeochemical signature of the deposits represents the terrestrial end-member, and is related to organic matter deposited in the marine realm.
Heike Hildegard Zimmermann, Elena Raschke, Laura Saskia Epp, Kathleen Rosmarie Stoof-Leichsenring, Georg Schwamborn, Lutz Schirrmeister, Pier Paul Overduin, and Ulrike Herzschuh
Biogeosciences, 14, 575–596, https://doi.org/10.5194/bg-14-575-2017, https://doi.org/10.5194/bg-14-575-2017, 2017
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Organic matter stored in permafrost will start decomposing due to climate warming. To better understand its composition in ice-rich Yedoma, we analyzed ancient sedimentary DNA, pollen and non-pollen palynomorphs throughout an 18.9 m long permafrost core. The combination of both proxies allow an interpretation both of regional floristic changes and of the local environmental conditions at the time of deposition.
Pier Paul Overduin, Sebastian Wetterich, Frank Günther, Mikhail N. Grigoriev, Guido Grosse, Lutz Schirrmeister, Hans-Wolfgang Hubberten, and Aleksandr Makarov
The Cryosphere, 10, 1449–1462, https://doi.org/10.5194/tc-10-1449-2016, https://doi.org/10.5194/tc-10-1449-2016, 2016
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How fast does permafrost warm up and thaw after it is covered by the sea? Ice-rich permafrost in the Laptev Sea, Siberia, is rapidly eroded by warm air and waves. We used a floating electrical technique to measure the depth of permafrost thaw below the sea, and compared it to 60 years of coastline retreat and permafrost depths from drilling 30 years ago. Thaw is rapid right after flooding of the land and slows over time. The depth of permafrost is related to how fast the coast retreats.
Fabian Beermann, Moritz Langer, Sebastian Wetterich, Jens Strauss, Julia Boike, Claudia Fiencke, Lutz Schirrmeister, Eva-Maria Pfeiffer, and Lars Kutzbach
Biogeosciences Discuss., https://doi.org/10.5194/bg-2016-117, https://doi.org/10.5194/bg-2016-117, 2016
Revised manuscript not accepted
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This paper aims to quantify pools of inorganic nitrogen in permafrost soils of arctic Siberia and to estimate annual release rates of this nitrogen due to permafrost thaw. We report for the first time stores of inorganic nitrogen in Siberian permafrost soils. These nitrogen stores are important as permafrost thaw can mobilize substantial amounts of nitrogen, potentially changing the nutrient balance of these soils and representing a significant non-carbon permafrost climate feedback.
T. Schneider von Deimling, G. Grosse, J. Strauss, L. Schirrmeister, A. Morgenstern, S. Schaphoff, M. Meinshausen, and J. Boike
Biogeosciences, 12, 3469–3488, https://doi.org/10.5194/bg-12-3469-2015, https://doi.org/10.5194/bg-12-3469-2015, 2015
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We have modelled the carbon release from thawing permafrost soils under various scenarios of future warming. Our results suggests that up to about 140Pg of carbon could be released under strong warming by end of the century. We have shown that abrupt thaw processes under thermokarst lakes can unlock large amounts of perennially frozen carbon stored in deep deposits (which extend many metres into the soil).
J. Strauss, L. Schirrmeister, K. Mangelsdorf, L. Eichhorn, S. Wetterich, and U. Herzschuh
Biogeosciences, 12, 2227–2245, https://doi.org/10.5194/bg-12-2227-2015, https://doi.org/10.5194/bg-12-2227-2015, 2015
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Climatic warming is affecting permafrost, including decomposition of organic matter (OM). However, quantitative data for the quality of OM and its availability for decomposition is limited. We analyzed the quality of OM in late Pleistocene (Yedoma) and Holocene (thermokarst) deposits. A lack of depth trends reveals a constant quality of OM showing that permafrost acts like a freezer, preserving OM quality. This OM will be susceptible to decomposition under climatic warming.
G. Hugelius, J. Strauss, S. Zubrzycki, J. W. Harden, E. A. G. Schuur, C.-L. Ping, L. Schirrmeister, G. Grosse, G. J. Michaelson, C. D. Koven, J. A. O'Donnell, B. Elberling, U. Mishra, P. Camill, Z. Yu, J. Palmtag, and P. Kuhry
Biogeosciences, 11, 6573–6593, https://doi.org/10.5194/bg-11-6573-2014, https://doi.org/10.5194/bg-11-6573-2014, 2014
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This study provides an updated estimate of organic carbon stored in the northern permafrost region. The study includes estimates for carbon in soils (0 to 3 m depth) and deeper sediments in river deltas and the Yedoma region. We find that field data is still scarce from many regions. Total estimated carbon storage is ~1300 Pg with an uncertainty range of between 1100 and 1500 Pg. Around 800 Pg carbon is perennially frozen, equivalent to all carbon dioxide currently in the Earth's atmosphere.
G. Schwamborn, H. Meyer, L. Schirrmeister, and G. Fedorov
Clim. Past, 10, 1109–1123, https://doi.org/10.5194/cp-10-1109-2014, https://doi.org/10.5194/cp-10-1109-2014, 2014
G. Hugelius, J. G. Bockheim, P. Camill, B. Elberling, G. Grosse, J. W. Harden, K. Johnson, T. Jorgenson, C. D. Koven, P. Kuhry, G. Michaelson, U. Mishra, J. Palmtag, C.-L. Ping, J. O'Donnell, L. Schirrmeister, E. A. G. Schuur, Y. Sheng, L. C. Smith, J. Strauss, and Z. Yu
Earth Syst. Sci. Data, 5, 393–402, https://doi.org/10.5194/essd-5-393-2013, https://doi.org/10.5194/essd-5-393-2013, 2013
G. Schwamborn, L. Schirrmeister, and B. Diekmann
Clim. Past Discuss., https://doi.org/10.5194/cpd-9-6255-2013, https://doi.org/10.5194/cpd-9-6255-2013, 2013
Preprint withdrawn
D. Mottaghy, G. Schwamborn, and V. Rath
Clim. Past, 9, 119–133, https://doi.org/10.5194/cp-9-119-2013, https://doi.org/10.5194/cp-9-119-2013, 2013
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Technical note: Uncovering the influence of methodological variations on the extractability of iron-bound organic carbon
Anthropocene climate warming enhances autochthonous carbon cycling in an upland Arctic lake, Disko Island, West Greenland
Novel hydrocarbon-utilizing soil mycobacteria synthesize unique mycocerosic acids at a Sicilian everlasting fire
Alkenone isotopes show evidence of active carbon concentrating mechanisms in coccolithophores as aqueous carbon dioxide concentrations fall below 7 µmol L−1
Seasonal variability and sources of in situ brGDGT production in a permanently stratified African crater lake
Sediment release of dissolved organic matter to the oxygen minimum zone off Peru
Better molecular preservation of organic matter in an oxic than in a sulfidic depositional environment: evidence from Thalassiphora pelagica (Dinoflagellata, Eocene) cysts
Assessing branched tetraether lipids as tracers of soil organic carbon transport through the Carminowe Creek catchment (southwest England)
The nonconservative distribution pattern of organic matter in the Rajang, a tropical river with peatland in its estuary
Predominance of hexamethylated 6-methyl branched glycerol dialkyl glycerol tetraethers in the Mariana Trench: source and environmental implication
High-pH and anoxic conditions during soil organic matter extraction increases its electron-exchange capacity and ability to stimulate microbial Fe(III) reduction by electron shuttling
Sterol preservation in hypersaline microbial mats
Structural elucidation and environmental distributions of butanetriol and pentanetriol dialkyl glycerol tetraethers (BDGTs and PDGTs)
Shao-Min Chen, Thibaud Dezutter, David Cote, Catherine Lalande, Evan Edinger, and Owen A. Sherwood
Biogeosciences, 22, 2517–2540, https://doi.org/10.5194/bg-22-2517-2025, https://doi.org/10.5194/bg-22-2517-2025, 2025
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The origins and composition of sinking organic matter are still understudied for the oceans, especially in ice-covered areas. We use amino acid stable isotopes combined with particle flux and plankton taxonomy to investigate the sources and composition of exported organic matter from a sediment-trap-derived time series of sinking particles in the northwestern Labrador Sea. We found that sea-ice algae and fecal pellets may be important contributors to the sinking fluxes of carbon and nitrogen.
Dahae Kim, Jung-Hyun Kim, Youngkyu Ahn, Matthias Forwick, and Seung-Il Nam
EGUsphere, https://doi.org/10.5194/egusphere-2025-957, https://doi.org/10.5194/egusphere-2025-957, 2025
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The Arctic is warming rapidly, altering carbon storage in Svalbard’s Kongsfjorden. Our study analyzed sediment cores to track organic carbon shifts over time. We found that increasing Atlantic Water inflow enhanced marine carbon while reducing land-derived inputs. These findings suggest that Atlantification is reshaping carbon sequestration in Arctic fjords, with broader implications for the Arctic carbon cycle.
Junhyeong Seo, Heejun Han, Intae Kim, and Guebuem Kim
EGUsphere, https://doi.org/10.5194/egusphere-2025-501, https://doi.org/10.5194/egusphere-2025-501, 2025
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This study examines methodological uncertainties in FDOM (fluorescent dissolved organic matter) measurements due to filter blanks, pore sizes, and storage conditions. Results show that pre-cleaning filters and optimizing storage improve measurement reliability. These finding minimize procedural errors and provide clear guidelines for FDOM analysis, emphasizing the need for method standardization in marine biogeochemical research.
Arianna Rocchi, Mark F. Fitzsimons, Preston Akenga, Ana Sotomayor, Elisabet L. Sà, Queralt Güell-Bujons, Magda Vila, Yaiza M. Castillo, Manuel Dall’Osto, Dolors Vaqué, Charel Wohl, Rafel Simó, and Elisa Berdalet
EGUsphere, https://doi.org/10.5194/egusphere-2025-407, https://doi.org/10.5194/egusphere-2025-407, 2025
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During the Polar Change expedition, volatile alkylamines, important players in nitrogen cycling and cloud formation, were measured in Antarctic waters using a high-sensitivity method. Trimethylamine was the dominant alkylamine in marine particles, associated with nanophytoplankton. Dissolved dimethylamine likely originated from trimethylamine degradation, while diethylamine sources remain unclear. These findings confirm the biological origin of alkylamines in polar marine microbial food webs.
Guangyi Su, Julie Tolu, Clemens Glombitza, Jakob Zopfi, Moritz F. Lehmann, Mark A. Lever, and Carsten J. Schubert
EGUsphere, https://doi.org/10.5194/egusphere-2025-437, https://doi.org/10.5194/egusphere-2025-437, 2025
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In Lake Geneva, we studied how different types of organic matter affect methane production. Despite varying sources—like algae and land-based materials, both deep and delta areas are significant methane sources and methane was mainly produced through CO2 reduction. Surprisingly, the origin of organic matter didn’t strongly influence methane production rates or pathways. Our findings highlight the need to better understand microbial processes to predict methane emissions from lakes.
Maria G. Digernes, Yasemin V. Bodur, Martí Amargant-Arumí, Oliver Müller, Jeffrey A. Hawkes, Stephen G. Kohler, Ulrike Dietrich, Marit Reigstad, and Maria L. Paulsen
Biogeosciences, 22, 601–623, https://doi.org/10.5194/bg-22-601-2025, https://doi.org/10.5194/bg-22-601-2025, 2025
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Dissolved (DOM) and particulate organic matter (POM) are in constant exchange but are usually studied as distinct entities. We investigated the dynamics between POM and DOM in a sub-Arctic fjord across different seasons by conducting bi-monthly aggregation–dissolution experiments. During the productive period, POM concentrations increased in the experiment, and DOM molecules became more recalcitrant. During the winter period, POM concentrations decreased, and DOM molecules became more labile.
Alessio Leins, Danaé Bregnard, Andrea Vieth-Hillebrand, Stefanie Poetz, Florian Eichinger, Guillaume Cailleau, Pilar Junier, and Simona Regenspurg
Biogeosciences, 21, 5457–5479, https://doi.org/10.5194/bg-21-5457-2024, https://doi.org/10.5194/bg-21-5457-2024, 2024
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Organic matter and microbial fluid analysis are rarely considered in the geothermal industry and research. However, they can have a significant impact on the efficiency of geothermal energy production. We found a high diversity of organic compound compositions in our samples and were able to differentiate them with respect to different sources (e.g. artificial and biogenic). Furthermore, the microbial diversity undergoes significant changes within the flow path of a geothermal power plant.
Colleen L. Hoffman, Patrick J. Monreal, Justine B. Albers, Alastair J. M. Lough, Alyson E. Santoro, Travis Mellett, Kristen N. Buck, Alessandro Tagliabue, Maeve C. Lohan, Joseph A. Resing, and Randelle M. Bundy
Biogeosciences, 21, 5233–5246, https://doi.org/10.5194/bg-21-5233-2024, https://doi.org/10.5194/bg-21-5233-2024, 2024
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Hydrothermally derived iron can be transported kilometers away from deep-sea vents, representing a significant flux of vital micronutrients to the ocean. However, the mechanisms that support the stabilization of dissolved iron remain elusive. Using electrochemical, spectrometry, and genomic methods, we demonstrated that strong ligands exert an important control on iron in plumes, and high-affinity iron-binding siderophores were identified in several hydrothermal plume samples for the first time.
Chiara Santinelli, Silvia Valsecchi, Simona Retelletti Brogi, Giancarlo Bachi, Giovanni Checcucci, Mirco Guerrazzi, Elisa Camatti, Stefano Caserini, Arianna Azzellino, and Daniela Basso
Biogeosciences, 21, 5131–5141, https://doi.org/10.5194/bg-21-5131-2024, https://doi.org/10.5194/bg-21-5131-2024, 2024
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Ocean liming is a technique proposed to mitigate ocean acidification. Every action we take has an impact on the environment and the effects on the invisible world are often overlooked. With this study, we show that lime addition impacts the dynamics of dissolved organic matter, one of the largest reservoirs of carbon on Earth, representing the main source of energy for marine microbes. Further studies to assess the impacts on marine ecosystems are therefore crucial before taking any action.
Mak A. Saito, Jaclyn K. Saunders, Matthew R. McIlvin, Erin M. Bertrand, John A. Breier, Margaret Mars Brisbin, Sophie M. Colston, Jaimee R. Compton, Tim J. Griffin, W. Judson Hervey, Robert L. Hettich, Pratik D. Jagtap, Michael Janech, Rod Johnson, Rick Keil, Hugo Kleikamp, Dagmar Leary, Lennart Martens, J. Scott P. McCain, Eli Moore, Subina Mehta, Dawn M. Moran, Jaqui Neibauer, Benjamin A. Neely, Michael V. Jakuba, Jim Johnson, Megan Duffy, Gerhard J. Herndl, Richard Giannone, Ryan Mueller, Brook L. Nunn, Martin Pabst, Samantha Peters, Andrew Rajczewski, Elden Rowland, Brian Searle, Tim Van Den Bossche, Gary J. Vora, Jacob R. Waldbauer, Haiyan Zheng, and Zihao Zhao
Biogeosciences, 21, 4889–4908, https://doi.org/10.5194/bg-21-4889-2024, https://doi.org/10.5194/bg-21-4889-2024, 2024
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The ability to assess the functional capabilities of microbes in the environment is of increasing interest. Metaproteomics, the ability to measure proteins across microbial populations, has been increasing in capability and popularity in recent years. Here, an international team of scientists conducted an intercomparison study using samples collected from the North Atlantic Ocean and observed consistency in the peptides and proteins identified, their functions, and their taxonomic origins.
Devika Varma, Laura Villanueva, Nicole J. Bale, Pierre Offre, Gert-Jan Reichart, and Stefan Schouten
Biogeosciences, 21, 4875–4888, https://doi.org/10.5194/bg-21-4875-2024, https://doi.org/10.5194/bg-21-4875-2024, 2024
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Archaeal hydroxylated tetraether lipids are increasingly used as temperature indicators in marine settings, but the factors influencing their distribution are still unclear. Analyzing membrane lipids of two thaumarchaeotal strains showed that the growth phase of the cultures does not affect the lipid distribution, but growth temperature profoundly affects the degree of cyclization of these lipids. Also, the abundance of these lipids is species-specific and is not influenced by temperature.
William Kew, Allison Myers-Pigg, Christine H. Chang, Sean M. Colby, Josie Eder, Malak M. Tfaily, Jeffrey Hawkes, Rosalie K. Chu, and James C. Stegen
Biogeosciences, 21, 4665–4679, https://doi.org/10.5194/bg-21-4665-2024, https://doi.org/10.5194/bg-21-4665-2024, 2024
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Natural organic matter (NOM) is often studied via Fourier transform mass spectrometry (FTMS), which identifies organic molecules as mass spectra peaks. The intensity of peaks is data that is often discarded due to technical concerns. We review the theory behind these concerns and show they are supported empirically. However, simulations show that ecological analyses of NOM data that include FTMS peak intensities are often valid. This opens a path for robust use of FTMS peak intensities for NOM.
Evan R. Collins, Troy M. Ferland, Isla S. Castañeda, R. Bernhart Owen, Tim K. Lowenstein, Andrew S. Cohen, Robin W. Renaut, Molly D. O'Beirne, and Josef P. Werne
EGUsphere, https://doi.org/10.5194/egusphere-2024-3006, https://doi.org/10.5194/egusphere-2024-3006, 2024
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Archaeal molecular fossils (tetraethers) have been used around the globe to track changes in climate. Little is known about archaeal response to environmental change in soda lakes, especially lakes influenced by hydrothermal inputs. For the first time in Lake Magadi, we show tetraethers tracking abrupt changes in methane and non-methane producers due to hydrothermal inputs to the lake. This study provides insight into the role of hydrothermal water sources and methane production in soda lakes.
Adam J. Fagan, Tatsuro Tanioka, Alyse A. Larkin, Jenna A. Lee, Nathan S. Garcia, and Adam C. Martiny
Biogeosciences, 21, 4239–4250, https://doi.org/10.5194/bg-21-4239-2024, https://doi.org/10.5194/bg-21-4239-2024, 2024
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Climate change is anticipated to influence the biological pump by altering phytoplankton nutrient distribution. In our research, we collected measurements of particulate matter concentrations during two oceanographic field studies. We observed systematic variations in organic matter concentrations and ratios across the Atlantic Ocean. From statistical modeling, we determined that these variations are associated with differences in the availability of essential nutrients for phytoplankton growth.
Sebastian I. Cantarero, Edgart Flores, Harry Allbrook, Paulina Aguayo, Cristian A. Vargas, John E. Tamanaha, J. Bentley C. Scholz, Lennart T. Bach, Carolin R. Löscher, Ulf Riebesell, Balaji Rajagopalan, Nadia Dildar, and Julio Sepúlveda
Biogeosciences, 21, 3927–3958, https://doi.org/10.5194/bg-21-3927-2024, https://doi.org/10.5194/bg-21-3927-2024, 2024
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Our study explores lipid remodeling in response to environmental stress, specifically how cell membrane chemistry changes. We focus on intact polar lipids in a phytoplankton community exposed to diverse stressors in a mesocosm experiment. The observed remodeling indicates acyl chain recycling for energy storage in intact polar lipids during stress, reallocating resources based on varying growth conditions. This understanding is essential to grasp the system's impact on cellular pools.
Mengke Wang, Peng Zhang, Huishan Li, Guisen Deng, Deliang Kong, Sifang Kong, and Junjian Wang
Biogeosciences, 21, 2691–2704, https://doi.org/10.5194/bg-21-2691-2024, https://doi.org/10.5194/bg-21-2691-2024, 2024
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We developed and applied complementary analyses to characterize molecular-level carbon traits for water-grown and soil-grown fine roots. The adaptive strategy of developing more labile carbon in water-grown roots accelerated root decomposition and counteracted the decelerated effects of anoxia on decomposition, highlighting an indirect effect of environmental change on belowground carbon cycling.
Zhe-Xuan Zhang, Edith Parlanti, Christelle Anquetil, Jérôme Morelle, Anniet M. Laverman, Alexandre Thibault, Elisa Bou, and Arnaud Huguet
Biogeosciences, 21, 2227–2252, https://doi.org/10.5194/bg-21-2227-2024, https://doi.org/10.5194/bg-21-2227-2024, 2024
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Bacterial tetraethers have important implications for palaeoclimate reconstruction. However, fundamental understanding of how these lipids are transformed from land to sea and which environmental factors influence their distributions is lacking. Here, we investigate the sources of brGDGTs and brGMGTs and the factors controlling their distributions in a large dataset (n=237). We propose a novel proxy (RIX) to trace riverine runoff, which is applicable in modern systems and in paleorecord.
Youcheng Bai, Marie-Alexandrine Sicre, Jian Ren, Vincent Klein, Haiyan Jin, and Jianfang Chen
Biogeosciences, 21, 689–709, https://doi.org/10.5194/bg-21-689-2024, https://doi.org/10.5194/bg-21-689-2024, 2024
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Algal biomarkers were used to assess sea ice and pelagic algal production across the western Arctic Ocean with changing sea-ice conditions. They show three distinct areas along with a marked latitudinal gradient of sea ice over pelagic algal production in surface sediments that are reflected by the H-Print index. Our data also show that efficient grazing consumption accounted for the dramatic decrease of diatom-derived biomarkers in sediments compared to that of particulate matter.
Hanxiao Wang, Zhifei Liu, Jiaying Li, Baozhi Lin, Yulong Zhao, Xiaodong Zhang, Junyuan Cao, Jingwen Zhang, Hongzhe Song, and Wenzhuo Wang
Biogeosciences, 20, 5109–5123, https://doi.org/10.5194/bg-20-5109-2023, https://doi.org/10.5194/bg-20-5109-2023, 2023
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The sinking of zooplankton fecal pellets is a key process in the marine biological carbon pump. This study presents carbon export of four shapes of fecal pellets from two time-series sediment traps in the South China Sea. The results show that the sinking fate of fecal pellets is regulated by marine primary productivity, deep-dwelling zooplankton community, and deep-sea currents in the tropical marginal sea, thus providing a new perspective for exploring the carbon cycle in the world ocean.
Rebecca J. Chmiel, Riss M. Kell, Deepa Rao, Dawn M. Moran, Giacomo R. DiTullio, and Mak A. Saito
Biogeosciences, 20, 3997–4027, https://doi.org/10.5194/bg-20-3997-2023, https://doi.org/10.5194/bg-20-3997-2023, 2023
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Cobalt is an important micronutrient for plankton, yet it is often scarce throughout the oceans. A 2017/2018 expedition to coastal Antarctica, including regions of the Amundsen Sea and the Ross Sea, discovered lower concentrations of cobalt compared to two past expeditions in 2005 and 2006, particularly for the type of cobalt preferred as a nutrient by phytoplankton. This loss may be due to changing inputs of other nutrients, causing higher uptake of cobalt by plankton over the last decade.
Emily B. Graham, Hyun-Seob Song, Samantha Grieger, Vanessa A. Garayburu-Caruso, James C. Stegen, Kevin D. Bladon, and Allison N. Myers-Pigg
Biogeosciences, 20, 3449–3457, https://doi.org/10.5194/bg-20-3449-2023, https://doi.org/10.5194/bg-20-3449-2023, 2023
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Intensifying wildfires are increasing pyrogenic organic matter (PyOM) production and its impact on water quality. Recent work indicates that PyOM may have a greater impact on aquatic biogeochemistry than previously assumed, driven by higher bioavailability. We provide a full assessment of the potential bioavailability of PyOM across its chemical spectrum. We indicate that PyOM can be actively transformed within the river corridor and, therefore, may be a growing source of riverine C emissions.
Nora Richter, Ellen C. Hopmans, Danica Mitrović, Pedro M. Raposeiro, Vítor Gonçalves, Ana C. Costa, Linda A. Amaral-Zettler, Laura Villanueva, and Darci Rush
Biogeosciences, 20, 2065–2098, https://doi.org/10.5194/bg-20-2065-2023, https://doi.org/10.5194/bg-20-2065-2023, 2023
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Bacteriohopanepolyols (BHPs) are a diverse class of lipids produced by bacteria across a wide range of environments. This study characterizes the diversity of BHPs in lakes and coastal lagoons in the Azores Archipelago, as well as a co-culture enriched for methanotrophs. We highlight the potential of BHPs as taxonomic markers for bacteria associated with certain ecological niches, which can be preserved in sedimentary records.
Andrea Scheibe, Carlos A. Sierra, and Marie Spohn
Biogeosciences, 20, 827–838, https://doi.org/10.5194/bg-20-827-2023, https://doi.org/10.5194/bg-20-827-2023, 2023
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We explored carbon cycling in soils in three climate zones in Chile down to a depth of 6 m, using carbon isotopes. Our results show that microbial activity several meters below the soil surface is mostly fueled by recently fixed carbon and that strong decomposition of soil organic matter only occurs in the upper decimeters of the soils. The study shows that different layers of the critical zone are tightly connected and that processes in the deep soil depend on recently fixed carbon.
Melissa Sophia Schwab, Hannah Gies, Chantal Valérie Freymond, Maarten Lupker, Negar Haghipour, and Timothy Ian Eglinton
Biogeosciences, 19, 5591–5616, https://doi.org/10.5194/bg-19-5591-2022, https://doi.org/10.5194/bg-19-5591-2022, 2022
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The majority of river studies focus on headwater or floodplain systems, while often neglecting intermediate river segments. Our study on the subalpine Sihl River bridges the gap between streams and lowlands and demonstrates that moderately steep river segments are areas of significant instream alterations, modulating the export of organic carbon over short distances.
Lisa Noll, Shasha Zhang, Qing Zheng, Yuntao Hu, Florian Hofhansl, and Wolfgang Wanek
Biogeosciences, 19, 5419–5433, https://doi.org/10.5194/bg-19-5419-2022, https://doi.org/10.5194/bg-19-5419-2022, 2022
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Cleavage of proteins to smaller nitrogen compounds allows microorganisms and plants to exploit the largest nitrogen reservoir in soils and is considered the bottleneck in soil organic nitrogen cycling. Results from soils covering a European transect show that protein turnover is constrained by soil geochemistry, shifts in climate and associated alterations in soil weathering and should be considered as a driver of soil nitrogen availability with repercussions on carbon cycle processes.
Muhammed Fatih Sert, Helge Niemann, Eoghan P. Reeves, Mats A. Granskog, Kevin P. Hand, Timo Kekäläinen, Janne Jänis, Pamela E. Rossel, Bénédicte Ferré, Anna Silyakova, and Friederike Gründger
Biogeosciences, 19, 2101–2120, https://doi.org/10.5194/bg-19-2101-2022, https://doi.org/10.5194/bg-19-2101-2022, 2022
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We investigate organic matter composition in the Arctic Ocean water column. We collected seawater samples from sea ice to deep waters at six vertical profiles near an active hydrothermal vent and its plume. In comparison to seawater, we found that the organic matter in waters directly affected by the hydrothermal plume had different chemical composition. We suggest that hydrothermal processes may influence the organic matter distribution in the deep ocean.
Charlotte Haugk, Loeka L. Jongejans, Kai Mangelsdorf, Matthias Fuchs, Olga Ogneva, Juri Palmtag, Gesine Mollenhauer, Paul J. Mann, P. Paul Overduin, Guido Grosse, Tina Sanders, Robyn E. Tuerena, Lutz Schirrmeister, Sebastian Wetterich, Alexander Kizyakov, Cornelia Karger, and Jens Strauss
Biogeosciences, 19, 2079–2094, https://doi.org/10.5194/bg-19-2079-2022, https://doi.org/10.5194/bg-19-2079-2022, 2022
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Buried animal and plant remains (carbon) from the last ice age were freeze-locked in permafrost. At an extremely fast eroding permafrost cliff in the Lena Delta (Siberia), we found this formerly frozen carbon well preserved. Our results show that ongoing degradation releases substantial amounts of this carbon, making it available for future carbon emissions. This mobilisation at the studied cliff and also similarly eroding sites bear the potential to affect rivers and oceans negatively.
Aleksandar I. Goranov, Andrew S. Wozniak, Kyle W. Bostick, Andrew R. Zimmerman, Siddhartha Mitra, and Patrick G. Hatcher
Biogeosciences, 19, 1491–1514, https://doi.org/10.5194/bg-19-1491-2022, https://doi.org/10.5194/bg-19-1491-2022, 2022
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Wildfire-derived molecules are ubiquitous in the aquatic environment, but their biological fate remains understudied. We have evaluated the compositional changes that occur to wildfire-derived molecules after incubation with soil microbes. We observe a significant degradation but also a production of numerous new labile molecules. Our results indicate that wildfire-derived molecules can be broken down and the carbon and nitrogen therein can be incorporated into microbial food webs.
Edgart Flores, Sebastian I. Cantarero, Paula Ruiz-Fernández, Nadia Dildar, Matthias Zabel, Osvaldo Ulloa, and Julio Sepúlveda
Biogeosciences, 19, 1395–1420, https://doi.org/10.5194/bg-19-1395-2022, https://doi.org/10.5194/bg-19-1395-2022, 2022
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In this study, we investigate the chemical diversity and abundance of microbial lipids as markers of organic matter sources in the deepest points of the Atacama Trench sediments and compare them to similar lipid stocks in shallower surface sediments and in the overlying water column. We evaluate possible organic matter provenance and some potential chemical adaptations of the in situ microbial community to the extreme conditions of high hydrostatic pressure in hadal realm.
Birgit Gaye, Niko Lahajnar, Natalie Harms, Sophie Anna Luise Paul, Tim Rixen, and Kay-Christian Emeis
Biogeosciences, 19, 807–830, https://doi.org/10.5194/bg-19-807-2022, https://doi.org/10.5194/bg-19-807-2022, 2022
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Amino acids were analyzed in a large number of samples of particulate and dissolved organic matter from coastal regions and the open ocean. A statistical analysis produced two new biogeochemical indicators. An indicator of sinking particle and sediment degradation (SDI) traces the degradation of organic matter from the surface waters into the sediments. A second indicator shows the residence time of suspended matter in the ocean (RTI).
Zoë R. van Kemenade, Laura Villanueva, Ellen C. Hopmans, Peter Kraal, Harry J. Witte, Jaap S. Sinninghe Damsté, and Darci Rush
Biogeosciences, 19, 201–221, https://doi.org/10.5194/bg-19-201-2022, https://doi.org/10.5194/bg-19-201-2022, 2022
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Anaerobic ammonium oxidation (anammox) is an important nitrogen-removal process in the ocean. We assess the distribution of bacteriohopanetetrol-x (BHT-x), used to trace past anammox, along a redox gradient in the water column of the Benguela upwelling system. BHT-x / BHT ratios of >0.18 correspond to the presence of living anammox bacteria and oxygen levels <50 μmol L−1. This allows for a more robust application of BHT-x to trace past marine anammox and deoxygenation in dynamic marine systems.
Jia-Jang Hung, Ching-Han Tung, Zong-Ying Lin, Yuh-ling Lee Chen, Shao-Hung Peng, Yen-Huei Lin, and Li-Shan Tsai
Biogeosciences, 18, 5141–5162, https://doi.org/10.5194/bg-18-5141-2021, https://doi.org/10.5194/bg-18-5141-2021, 2021
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We report measured active and passive fluxes and their controlling mechanisms in the northern South China Sea (NSCS). The total fluxes were higher than most reports in open oceans, indicating the significance of NSCS in atmospheric CO2 uptake and in storing that CO2 in the ocean’s interior. Winter cooling and extreme events enhanced nutrient availability and elevated fluxes. Global warming may have profound impacts on reducing ocean’s uptake and storage of CO2 in subtropical–tropical oceans.
Jens Daniel Müller, Bernd Schneider, Ulf Gräwe, Peer Fietzek, Marcus Bo Wallin, Anna Rutgersson, Norbert Wasmund, Siegfried Krüger, and Gregor Rehder
Biogeosciences, 18, 4889–4917, https://doi.org/10.5194/bg-18-4889-2021, https://doi.org/10.5194/bg-18-4889-2021, 2021
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Based on profiling pCO2 measurements from a field campaign, we quantify the biomass production of a cyanobacteria bloom in the Baltic Sea, the export of which would foster deep water deoxygenation. We further demonstrate how this biomass production can be accurately reconstructed from long-term surface measurements made on cargo vessels in combination with modelled temperature profiles. This approach enables a better understanding of a severe concern for the Baltic’s good environmental status.
Alexander Braun, Marina Spona-Friedl, Maria Avramov, Martin Elsner, Federico Baltar, Thomas Reinthaler, Gerhard J. Herndl, and Christian Griebler
Biogeosciences, 18, 3689–3700, https://doi.org/10.5194/bg-18-3689-2021, https://doi.org/10.5194/bg-18-3689-2021, 2021
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It is known that CO2 fixation by photoautotrophic organisms is the major sink from the atmosphere. While biologists are aware that CO2 fixation also occurs in heterotrophic organisms, this route of inorganic carbon, and its quantitative role, is hardly recognized in biogeochemistry. We demonstrate that a considerable amount of CO2 is fixed annually through anaplerotic reactions in heterotrophic organisms, and a significant quantity of inorganic carbon is temporally sequestered in biomass.
Jonathan H. Raberg, David J. Harning, Sarah E. Crump, Greg de Wet, Aria Blumm, Sebastian Kopf, Áslaug Geirsdóttir, Gifford H. Miller, and Julio Sepúlveda
Biogeosciences, 18, 3579–3603, https://doi.org/10.5194/bg-18-3579-2021, https://doi.org/10.5194/bg-18-3579-2021, 2021
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BrGDGT lipids are a proxy for temperature in lake sediments, but other parameters like pH can influence them, and seasonality can affect the temperatures they record. We find a warm-season bias at 43 new high-latitude sites. We also present a new method that deconvolves the effects of temperature, pH, and conductivity and generate global calibrations for these variables. Our study provides new paleoclimate tools, insight into brGDGTs at the biochemical level, and a new method for future study.
Charlotte L. Spencer-Jones, Erin L. McClymont, Nicole J. Bale, Ellen C. Hopmans, Stefan Schouten, Juliane Müller, E. Povl Abrahamsen, Claire Allen, Torsten Bickert, Claus-Dieter Hillenbrand, Elaine Mawbey, Victoria Peck, Aleksandra Svalova, and James A. Smith
Biogeosciences, 18, 3485–3504, https://doi.org/10.5194/bg-18-3485-2021, https://doi.org/10.5194/bg-18-3485-2021, 2021
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Long-term ocean temperature records are needed to fully understand the impact of West Antarctic Ice Sheet collapse. Glycerol dialkyl glycerol tetraethers (GDGTs) are powerful tools for reconstructing ocean temperature but can be difficult to apply to the Southern Ocean. Our results show active GDGT synthesis in relatively warm depths of the ocean. This research improves the application of GDGT palaeoceanographic proxies in the Southern Ocean.
Alec W. Armstrong, Leanne Powers, and Michael Gonsior
Biogeosciences, 18, 3367–3390, https://doi.org/10.5194/bg-18-3367-2021, https://doi.org/10.5194/bg-18-3367-2021, 2021
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Living things decay into organic matter, which can dissolve into water (like tea brewing). Tea receives its color by absorbing light. Similarly, this material absorbs light, which can then cause chemical reactions that change it. By measuring changes in these optical properties, we found that materials from some places are more sensitive to light than others. Comparing sensitivity to light helps us understand where these materials come from and what happens as they move through water.
Ben J. Fisher, Johan C. Faust, Oliver W. Moore, Caroline L. Peacock, and Christian März
Biogeosciences, 18, 3409–3419, https://doi.org/10.5194/bg-18-3409-2021, https://doi.org/10.5194/bg-18-3409-2021, 2021
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Organic carbon can be protected from microbial degradation in marine sediments through association with iron minerals on 1000-year timescales. Despite the importance of this carbon sink, our spatial and temporal understanding of iron-bound organic carbon interactions globally is poor. Here we show that caution must be applied when comparing quantification of iron-bound organic carbon extracted by different methods as the extraction strength and method specificity can be highly variable.
Mark A. Stevenson, Suzanne McGowan, Emma J. Pearson, George E. A. Swann, Melanie J. Leng, Vivienne J. Jones, Joseph J. Bailey, Xianyu Huang, and Erika Whiteford
Biogeosciences, 18, 2465–2485, https://doi.org/10.5194/bg-18-2465-2021, https://doi.org/10.5194/bg-18-2465-2021, 2021
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We link detailed stable isotope and biomarker analyses from the catchments of three Arctic upland lakes on Disko Island (West Greenland) to a recent dated sediment core to understand how carbon cycling has changed over the past ~500 years. We find that the carbon deposited in sediments in these upland lakes is predominately sourced from in-lake production due to the catchment's limited terrestrial vegetation and elevation and that recent increases in algal production link with climate change.
Nadine T. Smit, Laura Villanueva, Darci Rush, Fausto Grassa, Caitlyn R. Witkowski, Mira Holzheimer, Adriaan J. Minnaard, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 18, 1463–1479, https://doi.org/10.5194/bg-18-1463-2021, https://doi.org/10.5194/bg-18-1463-2021, 2021
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Soils from an everlasting fire (gas seep) in Sicily, Italy, reveal high relative abundances of novel uncultivated mycobacteria and unique 13C-depleted mycocerosic acids (multi-methyl branched fatty acids) close to the main gas seep. Our results imply that mycocerosic acids in combination with their depleted δ13C values offer a new biomarker tool to study the role of soil mycobacteria as hydrocarbon consumers in the modern and past global carbon cycle.
Marcus P. S. Badger
Biogeosciences, 18, 1149–1160, https://doi.org/10.5194/bg-18-1149-2021, https://doi.org/10.5194/bg-18-1149-2021, 2021
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Reconstructing ancient atmospheric CO2 is an important aim of palaeoclimate science in order to understand the Earth's climate system. One method, the alkenone proxy based on molecular fossils of coccolithophores, has been recently shown to be ineffective at low-to-moderate CO2 levels. In this paper I show that this is likely due to changes in the biogeochemistry of the coccolithophores when there is low carbon availability, but for much of the Cenozoic the alkenone proxy should have utility.
Loes G. J. van Bree, Francien Peterse, Allix J. Baxter, Wannes De Crop, Sigrid van Grinsven, Laura Villanueva, Dirk Verschuren, and Jaap S. Sinninghe Damsté
Biogeosciences, 17, 5443–5463, https://doi.org/10.5194/bg-17-5443-2020, https://doi.org/10.5194/bg-17-5443-2020, 2020
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Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are used as a paleothermometer based on their temperature dependence in global soils, but aquatic production complicates their use in lakes. BrGDGTs in the water column of Lake Chala, East Africa, respond to oxygen conditions and mixing. Changes in their signal can be linked to bacterial community composition rather than membrane adaptation to changing conditions. Their integrated signal in the sediment reflects mean air temperature.
Alexandra N. Loginova, Andrew W. Dale, Frédéric A. C. Le Moigne, Sören Thomsen, Stefan Sommer, David Clemens, Klaus Wallmann, and Anja Engel
Biogeosciences, 17, 4663–4679, https://doi.org/10.5194/bg-17-4663-2020, https://doi.org/10.5194/bg-17-4663-2020, 2020
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We measured dissolved organic carbon (DOC), nitrogen (DON) and matter (DOM) optical properties in pore waters and near-bottom waters of the eastern tropical South Pacific off Peru. The difference between diffusion-driven and net fluxes of DOC and DON and qualitative changes in DOM optical properties suggested active microbial utilisation of the released DOM at the sediment–water interface. Our results suggest that the sediment release of DOM contributes to microbial processes in the area.
Gerard J. M. Versteegh, Alexander J. P. Houben, and Karin A. F. Zonneveld
Biogeosciences, 17, 3545–3561, https://doi.org/10.5194/bg-17-3545-2020, https://doi.org/10.5194/bg-17-3545-2020, 2020
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Anoxic sediments mostly contain much more organic matter than oxic ones, and therefore organic matter in anoxic settings is often considered to be preserved better than in oxic settings. However, through the analysis of the same fossil dinoflagellate cyst species from both oxic and anoxic settings, we show that at a molecular level the preservation in the oxic sediments may be better since in the anoxic setting the cyst macromolecule has been altered by postdepositional modification.
Jingjing Guo, Miriam Glendell, Jeroen Meersmans, Frédérique Kirkels, Jack J. Middelburg, and Francien Peterse
Biogeosciences, 17, 3183–3201, https://doi.org/10.5194/bg-17-3183-2020, https://doi.org/10.5194/bg-17-3183-2020, 2020
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The fluxes of soil organic carbon (OC) transport from land to sea are poorly constrained, mostly due to the lack of a specific tracer for soil OC. Here we evaluate the use of specific molecules derived from soil bacteria as a tracer for soil OC in a small river catchment. We find that the initial soil signal is lost upon entering the aquatic environment. However, the local environmental history of the catchment is reflected by these molecules in the lake sediments that act as their sink.
Zhuo-Yi Zhu, Joanne Oakes, Bradley Eyre, Youyou Hao, Edwin Sien Aun Sia, Shan Jiang, Moritz Müller, and Jing Zhang
Biogeosciences, 17, 2473–2485, https://doi.org/10.5194/bg-17-2473-2020, https://doi.org/10.5194/bg-17-2473-2020, 2020
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Samples were collected in August 2016 in the Rajang River and its estuary, with tropical forest in the river basin and peatland in the estuary. Organic matter composition was influenced by transportation in the river basin, whereas peatland added clear biodegraded parts to the fluvial organic matter, which implies modification of the initial lability and/or starting points in the subsequent degradation and alternation processes after the organic matter enters the sea.
Wenjie Xiao, Yasong Wang, Yongsheng Liu, Xi Zhang, Linlin Shi, and Yunping Xu
Biogeosciences, 17, 2135–2148, https://doi.org/10.5194/bg-17-2135-2020, https://doi.org/10.5194/bg-17-2135-2020, 2020
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The hadal zone (6–11 km depth) is the least explored habitat on Earth. We studied microbial branched glycerol dialkyl glycerol tetraethers (brGDGTs) in the Challenger Deep, Mariana Trench. One unique feature is the strong predominance of 6-methyl brGDGT, which likely reflects an adaption of brGDGT-producing bacteria to alkaline seawater and low temperature. BrGDGTs, with elemental and isotopic data, suggest an autochthonous product for brGDGT. A new approach is proposed for brGDGT sourcing.
Yuge Bai, Edisson Subdiaga, Stefan B. Haderlein, Heike Knicker, and Andreas Kappler
Biogeosciences, 17, 683–698, https://doi.org/10.5194/bg-17-683-2020, https://doi.org/10.5194/bg-17-683-2020, 2020
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Biogeochemical processes of SOM are key for greenhouse gas emission and water quality. We extracted SOM by water or by NaOH–HCl under oxic–anoxic conditions. Chemical and anoxic extractions lead to higher SOM electron exchange capacities, resulting in stimulation of microbial Fe(III) reduction. Therefore, aqueous pH-neutral SOM extracts should be used to reflect environmental SOM redox processes, and artifacts of chemical extractions need to be considered when evaluating SOM redox processes.
Yan Shen, Volker Thiel, Pablo Suarez-Gonzalez, Sebastiaan W. Rampen, and Joachim Reitner
Biogeosciences, 17, 649–666, https://doi.org/10.5194/bg-17-649-2020, https://doi.org/10.5194/bg-17-649-2020, 2020
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Today, sterols are widespread in plants, animals, and fungi but are almost absent in the oldest rocks. Microbial mats, representing the earliest complex ecosystems on Earth, were omnipresent in Precambrian marine environments and may have degraded the sterols at that time. Here we analyze the distribution of sterols through a microbial mat. This provides insight into how variations in biological and nonbiological factors affect the preservation of sterols in modern and ancient microbial mats.
Sarah Coffinet, Travis B. Meador, Lukas Mühlena, Kevin W. Becker, Jan Schröder, Qing-Zeng Zhu, Julius S. Lipp, Verena B. Heuer, Matthew P. Crump, and Kai-Uwe Hinrichs
Biogeosciences, 17, 317–330, https://doi.org/10.5194/bg-17-317-2020, https://doi.org/10.5194/bg-17-317-2020, 2020
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This study deals with two membrane lipids called BDGTs and PDGTs. Membrane lipids are molecules forming the cell envelope of all organisms. Different organisms produce different lipids thus they can be used to detect the presence of specific organisms in the environment. We analyzed the structure of these new lipids and looked for potential producers. We found that they are likely made by microbes emitting methane below the sediment surface and could be used to track these specific microbes.
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Short summary
Climate warming in the Arctic results in thawing of permafrost deposits. This promotes the accessibility of freeze-locked old organic matter (OM) accumulated during the past. Characterizing OM of different depositional ages, we were able to show that OM from last glacial Yedoma deposits possess the highest potential to provide organic substrates such as acetate for microbial greenhouse gas production and therefore to accelerate the carbon–climate feedback cycle during ongoing global warming.
Climate warming in the Arctic results in thawing of permafrost deposits. This promotes the...
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