Articles | Volume 17, issue 2
https://doi.org/10.5194/bg-17-317-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-17-317-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
22 Jan 2020
Research article |
| 22 Jan 2020
| 22 Jan 2020
Structural elucidation and environmental distributions of butanetriol and pentanetriol dialkyl glycerol tetraethers (BDGTs and PDGTs)
MARUM – Center for Marine Environmental Sciences, University of
Bremen, Bremen, Germany
Travis B. Meador
MARUM – Center for Marine Environmental Sciences, University of
Bremen, Bremen, Germany
present address: Biology Centre CAS, SoWa-RI, České Budějovice, Czechia
Lukas Mühlena
MARUM – Center for Marine Environmental Sciences, University of
Bremen, Bremen, Germany
Kevin W. Becker
MARUM – Center for Marine Environmental Sciences, University of
Bremen, Bremen, Germany
present address: GEOMAR Helmholtz Centre for Ocean Research, Kiel, Germany
Jan Schröder
MARUM – Center for Marine Environmental Sciences, University of
Bremen, Bremen, Germany
Qing-Zeng Zhu
MARUM – Center for Marine Environmental Sciences, University of
Bremen, Bremen, Germany
Julius S. Lipp
MARUM – Center for Marine Environmental Sciences, University of
Bremen, Bremen, Germany
Verena B. Heuer
MARUM – Center for Marine Environmental Sciences, University of
Bremen, Bremen, Germany
Matthew P. Crump
School of Chemistry, University of Bristol, Bristol, UK
Kai-Uwe Hinrichs
MARUM – Center for Marine Environmental Sciences, University of
Bremen, Bremen, Germany
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Stanislav Jabinski, Vítězslav Kučera, Marek Kopáček, Jan Jansa, and Travis B. Meador
EGUsphere, https://doi.org/10.5194/egusphere-2024-3153, https://doi.org/10.5194/egusphere-2024-3153, 2024
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Microbial production is a key parameter in estimations of organic matter cycling in environmental systems, and fungi play a major role as decomposers. In order to investigate fungal production and turnover times in soils, we incubated fungal pure cultures with isotopically labelled water and bicarbonate to investigate growth signals encoded into lipid biomarkers, which can be applied to improve flux estimates in environmental studies.
Daniel Müller, Bo Liu, Walter Geibert, Moritz Holtappels, Lasse Sander, Elda Miramontes, Heidi Taubner, Susann Henkel, Kai-Uwe Hinrichs, Denise Bethke, Ingrid Dohrmann, and Sabine Kasten
EGUsphere, https://doi.org/10.5194/egusphere-2024-1632, https://doi.org/10.5194/egusphere-2024-1632, 2024
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Coastal and shelf sediments are the most important sinks for organic carbon (OC) on Earth. We produced a new high-resolution sediment and pore-water dataset from the Helgoland Mud Area (HMA), North Sea, to determine, which depositional factors control the preservation of OC. The burial efficiency is highest in an area of high sedimentation and terrigenous OC. The HMA covers 0.09 % of the North Sea, but accounts for 0.76 % of its OC accumulation, highlighting the importance of the depocentre.
Quentin Devresse, Kevin W. Becker, Arne Bendinger, Johannes Hahn, and Anja Engel
Biogeosciences, 19, 5199–5219, https://doi.org/10.5194/bg-19-5199-2022, https://doi.org/10.5194/bg-19-5199-2022, 2022
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Eddies are ubiquitous in the ocean and alter physical, chemical, and biological processes. However, how they affect organic carbon production and consumption is largely unknown. Here we show how an eddy triggers a cascade effect on biomass production and metabolic activities of phyto- and bacterioplankton. Our results may contribute to the improvement of biogeochemical models used to estimate carbon fluxes in the ocean.
Daniel A. Petrash, Ingrid M. Steenbergen, Astolfo Valero, Travis B. Meador, Tomáš Pačes, and Christophe Thomazo
Biogeosciences, 19, 1723–1751, https://doi.org/10.5194/bg-19-1723-2022, https://doi.org/10.5194/bg-19-1723-2022, 2022
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We spectroscopically evaluated the gradients of dissolved C, N, S, Fe and Mn in a newly formed redox-stratified lake. The lake features an intermediate redox state between nitrogenous and euxinic conditions that encompasses vigorous open sulfur cycling fuelled by the reducible Fe and Mn stocks of the anoxic sediments. This results in substantial bottom water loads of dissolved iron and sulfate. Observations made in this ecosystem have relevance for deep-time paleoceanographic reconstructions.
Florence Schubotz, Sitan Xie, Julius S. Lipp, Kai-Uwe Hinrichs, and Stuart G. Wakeham
Biogeosciences, 15, 6481–6501, https://doi.org/10.5194/bg-15-6481-2018, https://doi.org/10.5194/bg-15-6481-2018, 2018
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Organisms living in natural environments have to cope with constantly fluctuating conditions in order to compete and survive. Hereby, membrane lipids may play an integral role. This study demonstrates that the lipid repertoire and lipid modifications in marine picoplankton living in oxygen minimum zones may be larger than previously thought. The abundant presence of non-phosphorus lipids hint at nutrient limitation within deeper depths of the ocean, even though these are not considered as such.
Robert McKay, Neville Exon, Dietmar Müller, Karsten Gohl, Michael Gurnis, Amelia Shevenell, Stuart Henrys, Fumio Inagaki, Dhananjai Pandey, Jessica Whiteside, Tina van de Flierdt, Tim Naish, Verena Heuer, Yuki Morono, Millard Coffin, Marguerite Godard, Laura Wallace, Shuichi Kodaira, Peter Bijl, Julien Collot, Gerald Dickens, Brandon Dugan, Ann G. Dunlea, Ron Hackney, Minoru Ikehara, Martin Jutzeler, Lisa McNeill, Sushant Naik, Taryn Noble, Bradley Opdyke, Ingo Pecher, Lowell Stott, Gabriele Uenzelmann-Neben, Yatheesh Vadakkeykath, and Ulrich G. Wortmann
Sci. Dril., 24, 61–70, https://doi.org/10.5194/sd-24-61-2018, https://doi.org/10.5194/sd-24-61-2018, 2018
Fumio Inagaki, Kai-Uwe Hinrichs, Yusuke Kubo, and the IODP Expedition 337 Scientists
Sci. Dril., 21, 17–28, https://doi.org/10.5194/sd-21-17-2016, https://doi.org/10.5194/sd-21-17-2016, 2016
H. J. Mills, J. de Leeuw, K.-U. Hinrichs, F. Inagaki, and J. Kallmeyer
Sci. Dril., 20, 59–65, https://doi.org/10.5194/sd-20-59-2015, https://doi.org/10.5194/sd-20-59-2015, 2015
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Proceedings and results are presented from the Seoul 2014 Advancing Subsurface Biosphere and Paleoclimate Research workshop. Participants discussed past and present directions of IODP and ICDP subsurface research, including efforts with DCO and IMPRESS. Discussions led to the formation of a level-based communication system with the goal of improving communication and expectations between all drilling disciplines. The production of a biology-themed handbook to guide surface research is planned.
R. Zhu, Y.-S. Lin, J. S. Lipp, T. B. Meador, and K.-U. Hinrichs
Biogeosciences, 11, 4869–4880, https://doi.org/10.5194/bg-11-4869-2014, https://doi.org/10.5194/bg-11-4869-2014, 2014
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Results from a multi-laboratory ocean metaproteomic intercomparison: effects of LC-MS acquisition and data analysis procedures
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Hydrothermally derived iron can be transported kilometers away from deep-sea vents, representing a significant flux of vital micronutrients to the ocean. However, the mechanisms that support the stabilization of dissolved iron remain elusive. Using electrochemical, spectrometry, and genomic methods, we demonstrated that strong ligands exert an important control on iron in plumes, and high-affinity iron-binding siderophores were identified in several hydrothermal plume samples for the first time.
Chiara Santinelli, Silvia Valsecchi, Simona Retelletti Brogi, Giancarlo Bachi, Giovanni Checcucci, Mirco Guerrazzi, Elisa Camatti, Stefano Caserini, Arianna Azzellino, and Daniela Basso
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Ocean liming is a technique proposed to mitigate ocean acidification. Every action we take has an impact on the environment and the effects on the invisible world are often overlooked. With this study, we show that lime addition impacts the dynamics of dissolved organic matter, one of the largest reservoirs of carbon on Earth, representing the main source of energy for marine microbes. Further studies to assess the impacts on marine ecosystems are therefore crucial before taking any action.
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Biogeosciences, 21, 4889–4908, https://doi.org/10.5194/bg-21-4889-2024, https://doi.org/10.5194/bg-21-4889-2024, 2024
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Archaeal hydroxylated tetraether lipids are increasingly used as temperature indicators in marine settings, but the factors influencing their distribution are still unclear. Analyzing membrane lipids of two thaumarchaeotal strains showed that the growth phase of the cultures does not affect the lipid distribution, but growth temperature profoundly affects the degree of cyclization of these lipids. Also, the abundance of these lipids is species-specific and is not influenced by temperature.
William Kew, Allison Myers-Pigg, Christine H. Chang, Sean M. Colby, Josie Eder, Malak M. Tfaily, Jeffrey Hawkes, Rosalie K. Chu, and James C. Stegen
Biogeosciences, 21, 4665–4679, https://doi.org/10.5194/bg-21-4665-2024, https://doi.org/10.5194/bg-21-4665-2024, 2024
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Natural organic matter (NOM) is often studied via Fourier transform mass spectrometry (FTMS), which identifies organic molecules as mass spectra peaks. The intensity of peaks is data that is often discarded due to technical concerns. We review the theory behind these concerns and show they are supported empirically. However, simulations show that ecological analyses of NOM data that include FTMS peak intensities are often valid. This opens a path for robust use of FTMS peak intensities for NOM.
Adam J. Fagan, Tatsuro Tanioka, Alyse A. Larkin, Jenna A. Lee, Nathan S. Garcia, and Adam C. Martiny
Biogeosciences, 21, 4239–4250, https://doi.org/10.5194/bg-21-4239-2024, https://doi.org/10.5194/bg-21-4239-2024, 2024
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Climate change is anticipated to influence the biological pump by altering phytoplankton nutrient distribution. In our research, we collected measurements of particulate matter concentrations during two oceanographic field studies. We observed systematic variations in organic matter concentrations and ratios across the Atlantic Ocean. From statistical modeling, we determined that these variations are associated with differences in the availability of essential nutrients for phytoplankton growth.
Sebastian I. Cantarero, Edgart Flores, Harry Allbrook, Paulina Aguayo, Cristian A. Vargas, John E. Tamanaha, J. Bentley C. Scholz, Lennart T. Bach, Carolin R. Löscher, Ulf Riebesell, Balaji Rajagopalan, Nadia Dildar, and Julio Sepúlveda
Biogeosciences, 21, 3927–3958, https://doi.org/10.5194/bg-21-3927-2024, https://doi.org/10.5194/bg-21-3927-2024, 2024
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Our study explores lipid remodeling in response to environmental stress, specifically how cell membrane chemistry changes. We focus on intact polar lipids in a phytoplankton community exposed to diverse stressors in a mesocosm experiment. The observed remodeling indicates acyl chain recycling for energy storage in intact polar lipids during stress, reallocating resources based on varying growth conditions. This understanding is essential to grasp the system's impact on cellular pools.
Mengke Wang, Peng Zhang, Huishan Li, Guisen Deng, Deliang Kong, Sifang Kong, and Junjian Wang
Biogeosciences, 21, 2691–2704, https://doi.org/10.5194/bg-21-2691-2024, https://doi.org/10.5194/bg-21-2691-2024, 2024
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We developed and applied complementary analyses to characterize molecular-level carbon traits for water-grown and soil-grown fine roots. The adaptive strategy of developing more labile carbon in water-grown roots accelerated root decomposition and counteracted the decelerated effects of anoxia on decomposition, highlighting an indirect effect of environmental change on belowground carbon cycling.
Maria G. Digernes, Yasemin V. Bodur, Martí Amargant-Arumí, Oliver Müller, Jeffrey A. Hawkes, Stephen G. Kohler, Ulrike Dietrich, Marit Reigstad, and Maria Lund Paulsen
EGUsphere, https://doi.org/10.5194/egusphere-2024-1314, https://doi.org/10.5194/egusphere-2024-1314, 2024
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Dissolved (DOM) and particulate organic matter (POM) are in constant exchange, but usually studied as distinct entities. We investigated the dynamics between POM and DOM in a sub-Arctic fjord across different seasons by conducting bi-monthly aggregation-dissolution experiments. During the productive period, POM concentrations increased in the experiment while DOM molecules became more recalcitrant. During the winter period, POM concentrations decreased whereas DOM molecules became more labile.
Zhe-Xuan Zhang, Edith Parlanti, Christelle Anquetil, Jérôme Morelle, Anniet M. Laverman, Alexandre Thibault, Elisa Bou, and Arnaud Huguet
Biogeosciences, 21, 2227–2252, https://doi.org/10.5194/bg-21-2227-2024, https://doi.org/10.5194/bg-21-2227-2024, 2024
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Bacterial tetraethers have important implications for palaeoclimate reconstruction. However, fundamental understanding of how these lipids are transformed from land to sea and which environmental factors influence their distributions is lacking. Here, we investigate the sources of brGDGTs and brGMGTs and the factors controlling their distributions in a large dataset (n=237). We propose a novel proxy (RIX) to trace riverine runoff, which is applicable in modern systems and in paleorecord.
Youcheng Bai, Marie-Alexandrine Sicre, Jian Ren, Vincent Klein, Haiyan Jin, and Jianfang Chen
Biogeosciences, 21, 689–709, https://doi.org/10.5194/bg-21-689-2024, https://doi.org/10.5194/bg-21-689-2024, 2024
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Algal biomarkers were used to assess sea ice and pelagic algal production across the western Arctic Ocean with changing sea-ice conditions. They show three distinct areas along with a marked latitudinal gradient of sea ice over pelagic algal production in surface sediments that are reflected by the H-Print index. Our data also show that efficient grazing consumption accounted for the dramatic decrease of diatom-derived biomarkers in sediments compared to that of particulate matter.
Hanxiao Wang, Zhifei Liu, Jiaying Li, Baozhi Lin, Yulong Zhao, Xiaodong Zhang, Junyuan Cao, Jingwen Zhang, Hongzhe Song, and Wenzhuo Wang
Biogeosciences, 20, 5109–5123, https://doi.org/10.5194/bg-20-5109-2023, https://doi.org/10.5194/bg-20-5109-2023, 2023
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The sinking of zooplankton fecal pellets is a key process in the marine biological carbon pump. This study presents carbon export of four shapes of fecal pellets from two time-series sediment traps in the South China Sea. The results show that the sinking fate of fecal pellets is regulated by marine primary productivity, deep-dwelling zooplankton community, and deep-sea currents in the tropical marginal sea, thus providing a new perspective for exploring the carbon cycle in the world ocean.
Rebecca J. Chmiel, Riss M. Kell, Deepa Rao, Dawn M. Moran, Giacomo R. DiTullio, and Mak A. Saito
Biogeosciences, 20, 3997–4027, https://doi.org/10.5194/bg-20-3997-2023, https://doi.org/10.5194/bg-20-3997-2023, 2023
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Cobalt is an important micronutrient for plankton, yet it is often scarce throughout the oceans. A 2017/2018 expedition to coastal Antarctica, including regions of the Amundsen Sea and the Ross Sea, discovered lower concentrations of cobalt compared to two past expeditions in 2005 and 2006, particularly for the type of cobalt preferred as a nutrient by phytoplankton. This loss may be due to changing inputs of other nutrients, causing higher uptake of cobalt by plankton over the last decade.
Emily B. Graham, Hyun-Seob Song, Samantha Grieger, Vanessa A. Garayburu-Caruso, James C. Stegen, Kevin D. Bladon, and Allison N. Myers-Pigg
Biogeosciences, 20, 3449–3457, https://doi.org/10.5194/bg-20-3449-2023, https://doi.org/10.5194/bg-20-3449-2023, 2023
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Intensifying wildfires are increasing pyrogenic organic matter (PyOM) production and its impact on water quality. Recent work indicates that PyOM may have a greater impact on aquatic biogeochemistry than previously assumed, driven by higher bioavailability. We provide a full assessment of the potential bioavailability of PyOM across its chemical spectrum. We indicate that PyOM can be actively transformed within the river corridor and, therefore, may be a growing source of riverine C emissions.
Nora Richter, Ellen C. Hopmans, Danica Mitrović, Pedro M. Raposeiro, Vítor Gonçalves, Ana C. Costa, Linda A. Amaral-Zettler, Laura Villanueva, and Darci Rush
Biogeosciences, 20, 2065–2098, https://doi.org/10.5194/bg-20-2065-2023, https://doi.org/10.5194/bg-20-2065-2023, 2023
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Bacteriohopanepolyols (BHPs) are a diverse class of lipids produced by bacteria across a wide range of environments. This study characterizes the diversity of BHPs in lakes and coastal lagoons in the Azores Archipelago, as well as a co-culture enriched for methanotrophs. We highlight the potential of BHPs as taxonomic markers for bacteria associated with certain ecological niches, which can be preserved in sedimentary records.
Andrea Scheibe, Carlos A. Sierra, and Marie Spohn
Biogeosciences, 20, 827–838, https://doi.org/10.5194/bg-20-827-2023, https://doi.org/10.5194/bg-20-827-2023, 2023
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We explored carbon cycling in soils in three climate zones in Chile down to a depth of 6 m, using carbon isotopes. Our results show that microbial activity several meters below the soil surface is mostly fueled by recently fixed carbon and that strong decomposition of soil organic matter only occurs in the upper decimeters of the soils. The study shows that different layers of the critical zone are tightly connected and that processes in the deep soil depend on recently fixed carbon.
Melissa Sophia Schwab, Hannah Gies, Chantal Valérie Freymond, Maarten Lupker, Negar Haghipour, and Timothy Ian Eglinton
Biogeosciences, 19, 5591–5616, https://doi.org/10.5194/bg-19-5591-2022, https://doi.org/10.5194/bg-19-5591-2022, 2022
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The majority of river studies focus on headwater or floodplain systems, while often neglecting intermediate river segments. Our study on the subalpine Sihl River bridges the gap between streams and lowlands and demonstrates that moderately steep river segments are areas of significant instream alterations, modulating the export of organic carbon over short distances.
Lisa Noll, Shasha Zhang, Qing Zheng, Yuntao Hu, Florian Hofhansl, and Wolfgang Wanek
Biogeosciences, 19, 5419–5433, https://doi.org/10.5194/bg-19-5419-2022, https://doi.org/10.5194/bg-19-5419-2022, 2022
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Cleavage of proteins to smaller nitrogen compounds allows microorganisms and plants to exploit the largest nitrogen reservoir in soils and is considered the bottleneck in soil organic nitrogen cycling. Results from soils covering a European transect show that protein turnover is constrained by soil geochemistry, shifts in climate and associated alterations in soil weathering and should be considered as a driver of soil nitrogen availability with repercussions on carbon cycle processes.
Muhammed Fatih Sert, Helge Niemann, Eoghan P. Reeves, Mats A. Granskog, Kevin P. Hand, Timo Kekäläinen, Janne Jänis, Pamela E. Rossel, Bénédicte Ferré, Anna Silyakova, and Friederike Gründger
Biogeosciences, 19, 2101–2120, https://doi.org/10.5194/bg-19-2101-2022, https://doi.org/10.5194/bg-19-2101-2022, 2022
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We investigate organic matter composition in the Arctic Ocean water column. We collected seawater samples from sea ice to deep waters at six vertical profiles near an active hydrothermal vent and its plume. In comparison to seawater, we found that the organic matter in waters directly affected by the hydrothermal plume had different chemical composition. We suggest that hydrothermal processes may influence the organic matter distribution in the deep ocean.
Charlotte Haugk, Loeka L. Jongejans, Kai Mangelsdorf, Matthias Fuchs, Olga Ogneva, Juri Palmtag, Gesine Mollenhauer, Paul J. Mann, P. Paul Overduin, Guido Grosse, Tina Sanders, Robyn E. Tuerena, Lutz Schirrmeister, Sebastian Wetterich, Alexander Kizyakov, Cornelia Karger, and Jens Strauss
Biogeosciences, 19, 2079–2094, https://doi.org/10.5194/bg-19-2079-2022, https://doi.org/10.5194/bg-19-2079-2022, 2022
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Buried animal and plant remains (carbon) from the last ice age were freeze-locked in permafrost. At an extremely fast eroding permafrost cliff in the Lena Delta (Siberia), we found this formerly frozen carbon well preserved. Our results show that ongoing degradation releases substantial amounts of this carbon, making it available for future carbon emissions. This mobilisation at the studied cliff and also similarly eroding sites bear the potential to affect rivers and oceans negatively.
Aleksandar I. Goranov, Andrew S. Wozniak, Kyle W. Bostick, Andrew R. Zimmerman, Siddhartha Mitra, and Patrick G. Hatcher
Biogeosciences, 19, 1491–1514, https://doi.org/10.5194/bg-19-1491-2022, https://doi.org/10.5194/bg-19-1491-2022, 2022
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Wildfire-derived molecules are ubiquitous in the aquatic environment, but their biological fate remains understudied. We have evaluated the compositional changes that occur to wildfire-derived molecules after incubation with soil microbes. We observe a significant degradation but also a production of numerous new labile molecules. Our results indicate that wildfire-derived molecules can be broken down and the carbon and nitrogen therein can be incorporated into microbial food webs.
Edgart Flores, Sebastian I. Cantarero, Paula Ruiz-Fernández, Nadia Dildar, Matthias Zabel, Osvaldo Ulloa, and Julio Sepúlveda
Biogeosciences, 19, 1395–1420, https://doi.org/10.5194/bg-19-1395-2022, https://doi.org/10.5194/bg-19-1395-2022, 2022
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In this study, we investigate the chemical diversity and abundance of microbial lipids as markers of organic matter sources in the deepest points of the Atacama Trench sediments and compare them to similar lipid stocks in shallower surface sediments and in the overlying water column. We evaluate possible organic matter provenance and some potential chemical adaptations of the in situ microbial community to the extreme conditions of high hydrostatic pressure in hadal realm.
Birgit Gaye, Niko Lahajnar, Natalie Harms, Sophie Anna Luise Paul, Tim Rixen, and Kay-Christian Emeis
Biogeosciences, 19, 807–830, https://doi.org/10.5194/bg-19-807-2022, https://doi.org/10.5194/bg-19-807-2022, 2022
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Amino acids were analyzed in a large number of samples of particulate and dissolved organic matter from coastal regions and the open ocean. A statistical analysis produced two new biogeochemical indicators. An indicator of sinking particle and sediment degradation (SDI) traces the degradation of organic matter from the surface waters into the sediments. A second indicator shows the residence time of suspended matter in the ocean (RTI).
Zoë R. van Kemenade, Laura Villanueva, Ellen C. Hopmans, Peter Kraal, Harry J. Witte, Jaap S. Sinninghe Damsté, and Darci Rush
Biogeosciences, 19, 201–221, https://doi.org/10.5194/bg-19-201-2022, https://doi.org/10.5194/bg-19-201-2022, 2022
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Anaerobic ammonium oxidation (anammox) is an important nitrogen-removal process in the ocean. We assess the distribution of bacteriohopanetetrol-x (BHT-x), used to trace past anammox, along a redox gradient in the water column of the Benguela upwelling system. BHT-x / BHT ratios of >0.18 correspond to the presence of living anammox bacteria and oxygen levels <50 μmol L−1. This allows for a more robust application of BHT-x to trace past marine anammox and deoxygenation in dynamic marine systems.
Jia-Jang Hung, Ching-Han Tung, Zong-Ying Lin, Yuh-ling Lee Chen, Shao-Hung Peng, Yen-Huei Lin, and Li-Shan Tsai
Biogeosciences, 18, 5141–5162, https://doi.org/10.5194/bg-18-5141-2021, https://doi.org/10.5194/bg-18-5141-2021, 2021
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We report measured active and passive fluxes and their controlling mechanisms in the northern South China Sea (NSCS). The total fluxes were higher than most reports in open oceans, indicating the significance of NSCS in atmospheric CO2 uptake and in storing that CO2 in the ocean’s interior. Winter cooling and extreme events enhanced nutrient availability and elevated fluxes. Global warming may have profound impacts on reducing ocean’s uptake and storage of CO2 in subtropical–tropical oceans.
Jens Daniel Müller, Bernd Schneider, Ulf Gräwe, Peer Fietzek, Marcus Bo Wallin, Anna Rutgersson, Norbert Wasmund, Siegfried Krüger, and Gregor Rehder
Biogeosciences, 18, 4889–4917, https://doi.org/10.5194/bg-18-4889-2021, https://doi.org/10.5194/bg-18-4889-2021, 2021
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Based on profiling pCO2 measurements from a field campaign, we quantify the biomass production of a cyanobacteria bloom in the Baltic Sea, the export of which would foster deep water deoxygenation. We further demonstrate how this biomass production can be accurately reconstructed from long-term surface measurements made on cargo vessels in combination with modelled temperature profiles. This approach enables a better understanding of a severe concern for the Baltic’s good environmental status.
Alexander Braun, Marina Spona-Friedl, Maria Avramov, Martin Elsner, Federico Baltar, Thomas Reinthaler, Gerhard J. Herndl, and Christian Griebler
Biogeosciences, 18, 3689–3700, https://doi.org/10.5194/bg-18-3689-2021, https://doi.org/10.5194/bg-18-3689-2021, 2021
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It is known that CO2 fixation by photoautotrophic organisms is the major sink from the atmosphere. While biologists are aware that CO2 fixation also occurs in heterotrophic organisms, this route of inorganic carbon, and its quantitative role, is hardly recognized in biogeochemistry. We demonstrate that a considerable amount of CO2 is fixed annually through anaplerotic reactions in heterotrophic organisms, and a significant quantity of inorganic carbon is temporally sequestered in biomass.
Jonathan H. Raberg, David J. Harning, Sarah E. Crump, Greg de Wet, Aria Blumm, Sebastian Kopf, Áslaug Geirsdóttir, Gifford H. Miller, and Julio Sepúlveda
Biogeosciences, 18, 3579–3603, https://doi.org/10.5194/bg-18-3579-2021, https://doi.org/10.5194/bg-18-3579-2021, 2021
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BrGDGT lipids are a proxy for temperature in lake sediments, but other parameters like pH can influence them, and seasonality can affect the temperatures they record. We find a warm-season bias at 43 new high-latitude sites. We also present a new method that deconvolves the effects of temperature, pH, and conductivity and generate global calibrations for these variables. Our study provides new paleoclimate tools, insight into brGDGTs at the biochemical level, and a new method for future study.
Charlotte L. Spencer-Jones, Erin L. McClymont, Nicole J. Bale, Ellen C. Hopmans, Stefan Schouten, Juliane Müller, E. Povl Abrahamsen, Claire Allen, Torsten Bickert, Claus-Dieter Hillenbrand, Elaine Mawbey, Victoria Peck, Aleksandra Svalova, and James A. Smith
Biogeosciences, 18, 3485–3504, https://doi.org/10.5194/bg-18-3485-2021, https://doi.org/10.5194/bg-18-3485-2021, 2021
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Long-term ocean temperature records are needed to fully understand the impact of West Antarctic Ice Sheet collapse. Glycerol dialkyl glycerol tetraethers (GDGTs) are powerful tools for reconstructing ocean temperature but can be difficult to apply to the Southern Ocean. Our results show active GDGT synthesis in relatively warm depths of the ocean. This research improves the application of GDGT palaeoceanographic proxies in the Southern Ocean.
Alec W. Armstrong, Leanne Powers, and Michael Gonsior
Biogeosciences, 18, 3367–3390, https://doi.org/10.5194/bg-18-3367-2021, https://doi.org/10.5194/bg-18-3367-2021, 2021
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Living things decay into organic matter, which can dissolve into water (like tea brewing). Tea receives its color by absorbing light. Similarly, this material absorbs light, which can then cause chemical reactions that change it. By measuring changes in these optical properties, we found that materials from some places are more sensitive to light than others. Comparing sensitivity to light helps us understand where these materials come from and what happens as they move through water.
Ben J. Fisher, Johan C. Faust, Oliver W. Moore, Caroline L. Peacock, and Christian März
Biogeosciences, 18, 3409–3419, https://doi.org/10.5194/bg-18-3409-2021, https://doi.org/10.5194/bg-18-3409-2021, 2021
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Organic carbon can be protected from microbial degradation in marine sediments through association with iron minerals on 1000-year timescales. Despite the importance of this carbon sink, our spatial and temporal understanding of iron-bound organic carbon interactions globally is poor. Here we show that caution must be applied when comparing quantification of iron-bound organic carbon extracted by different methods as the extraction strength and method specificity can be highly variable.
Mark A. Stevenson, Suzanne McGowan, Emma J. Pearson, George E. A. Swann, Melanie J. Leng, Vivienne J. Jones, Joseph J. Bailey, Xianyu Huang, and Erika Whiteford
Biogeosciences, 18, 2465–2485, https://doi.org/10.5194/bg-18-2465-2021, https://doi.org/10.5194/bg-18-2465-2021, 2021
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We link detailed stable isotope and biomarker analyses from the catchments of three Arctic upland lakes on Disko Island (West Greenland) to a recent dated sediment core to understand how carbon cycling has changed over the past ~500 years. We find that the carbon deposited in sediments in these upland lakes is predominately sourced from in-lake production due to the catchment's limited terrestrial vegetation and elevation and that recent increases in algal production link with climate change.
Nadine T. Smit, Laura Villanueva, Darci Rush, Fausto Grassa, Caitlyn R. Witkowski, Mira Holzheimer, Adriaan J. Minnaard, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 18, 1463–1479, https://doi.org/10.5194/bg-18-1463-2021, https://doi.org/10.5194/bg-18-1463-2021, 2021
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Soils from an everlasting fire (gas seep) in Sicily, Italy, reveal high relative abundances of novel uncultivated mycobacteria and unique 13C-depleted mycocerosic acids (multi-methyl branched fatty acids) close to the main gas seep. Our results imply that mycocerosic acids in combination with their depleted δ13C values offer a new biomarker tool to study the role of soil mycobacteria as hydrocarbon consumers in the modern and past global carbon cycle.
Marcus P. S. Badger
Biogeosciences, 18, 1149–1160, https://doi.org/10.5194/bg-18-1149-2021, https://doi.org/10.5194/bg-18-1149-2021, 2021
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Reconstructing ancient atmospheric CO2 is an important aim of palaeoclimate science in order to understand the Earth's climate system. One method, the alkenone proxy based on molecular fossils of coccolithophores, has been recently shown to be ineffective at low-to-moderate CO2 levels. In this paper I show that this is likely due to changes in the biogeochemistry of the coccolithophores when there is low carbon availability, but for much of the Cenozoic the alkenone proxy should have utility.
Loes G. J. van Bree, Francien Peterse, Allix J. Baxter, Wannes De Crop, Sigrid van Grinsven, Laura Villanueva, Dirk Verschuren, and Jaap S. Sinninghe Damsté
Biogeosciences, 17, 5443–5463, https://doi.org/10.5194/bg-17-5443-2020, https://doi.org/10.5194/bg-17-5443-2020, 2020
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Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are used as a paleothermometer based on their temperature dependence in global soils, but aquatic production complicates their use in lakes. BrGDGTs in the water column of Lake Chala, East Africa, respond to oxygen conditions and mixing. Changes in their signal can be linked to bacterial community composition rather than membrane adaptation to changing conditions. Their integrated signal in the sediment reflects mean air temperature.
Alexandra N. Loginova, Andrew W. Dale, Frédéric A. C. Le Moigne, Sören Thomsen, Stefan Sommer, David Clemens, Klaus Wallmann, and Anja Engel
Biogeosciences, 17, 4663–4679, https://doi.org/10.5194/bg-17-4663-2020, https://doi.org/10.5194/bg-17-4663-2020, 2020
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We measured dissolved organic carbon (DOC), nitrogen (DON) and matter (DOM) optical properties in pore waters and near-bottom waters of the eastern tropical South Pacific off Peru. The difference between diffusion-driven and net fluxes of DOC and DON and qualitative changes in DOM optical properties suggested active microbial utilisation of the released DOM at the sediment–water interface. Our results suggest that the sediment release of DOM contributes to microbial processes in the area.
Gerard J. M. Versteegh, Alexander J. P. Houben, and Karin A. F. Zonneveld
Biogeosciences, 17, 3545–3561, https://doi.org/10.5194/bg-17-3545-2020, https://doi.org/10.5194/bg-17-3545-2020, 2020
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Anoxic sediments mostly contain much more organic matter than oxic ones, and therefore organic matter in anoxic settings is often considered to be preserved better than in oxic settings. However, through the analysis of the same fossil dinoflagellate cyst species from both oxic and anoxic settings, we show that at a molecular level the preservation in the oxic sediments may be better since in the anoxic setting the cyst macromolecule has been altered by postdepositional modification.
Jingjing Guo, Miriam Glendell, Jeroen Meersmans, Frédérique Kirkels, Jack J. Middelburg, and Francien Peterse
Biogeosciences, 17, 3183–3201, https://doi.org/10.5194/bg-17-3183-2020, https://doi.org/10.5194/bg-17-3183-2020, 2020
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The fluxes of soil organic carbon (OC) transport from land to sea are poorly constrained, mostly due to the lack of a specific tracer for soil OC. Here we evaluate the use of specific molecules derived from soil bacteria as a tracer for soil OC in a small river catchment. We find that the initial soil signal is lost upon entering the aquatic environment. However, the local environmental history of the catchment is reflected by these molecules in the lake sediments that act as their sink.
Zhuo-Yi Zhu, Joanne Oakes, Bradley Eyre, Youyou Hao, Edwin Sien Aun Sia, Shan Jiang, Moritz Müller, and Jing Zhang
Biogeosciences, 17, 2473–2485, https://doi.org/10.5194/bg-17-2473-2020, https://doi.org/10.5194/bg-17-2473-2020, 2020
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Samples were collected in August 2016 in the Rajang River and its estuary, with tropical forest in the river basin and peatland in the estuary. Organic matter composition was influenced by transportation in the river basin, whereas peatland added clear biodegraded parts to the fluvial organic matter, which implies modification of the initial lability and/or starting points in the subsequent degradation and alternation processes after the organic matter enters the sea.
Wenjie Xiao, Yasong Wang, Yongsheng Liu, Xi Zhang, Linlin Shi, and Yunping Xu
Biogeosciences, 17, 2135–2148, https://doi.org/10.5194/bg-17-2135-2020, https://doi.org/10.5194/bg-17-2135-2020, 2020
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The hadal zone (6–11 km depth) is the least explored habitat on Earth. We studied microbial branched glycerol dialkyl glycerol tetraethers (brGDGTs) in the Challenger Deep, Mariana Trench. One unique feature is the strong predominance of 6-methyl brGDGT, which likely reflects an adaption of brGDGT-producing bacteria to alkaline seawater and low temperature. BrGDGTs, with elemental and isotopic data, suggest an autochthonous product for brGDGT. A new approach is proposed for brGDGT sourcing.
Yuge Bai, Edisson Subdiaga, Stefan B. Haderlein, Heike Knicker, and Andreas Kappler
Biogeosciences, 17, 683–698, https://doi.org/10.5194/bg-17-683-2020, https://doi.org/10.5194/bg-17-683-2020, 2020
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Biogeochemical processes of SOM are key for greenhouse gas emission and water quality. We extracted SOM by water or by NaOH–HCl under oxic–anoxic conditions. Chemical and anoxic extractions lead to higher SOM electron exchange capacities, resulting in stimulation of microbial Fe(III) reduction. Therefore, aqueous pH-neutral SOM extracts should be used to reflect environmental SOM redox processes, and artifacts of chemical extractions need to be considered when evaluating SOM redox processes.
Yan Shen, Volker Thiel, Pablo Suarez-Gonzalez, Sebastiaan W. Rampen, and Joachim Reitner
Biogeosciences, 17, 649–666, https://doi.org/10.5194/bg-17-649-2020, https://doi.org/10.5194/bg-17-649-2020, 2020
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Today, sterols are widespread in plants, animals, and fungi but are almost absent in the oldest rocks. Microbial mats, representing the earliest complex ecosystems on Earth, were omnipresent in Precambrian marine environments and may have degraded the sterols at that time. Here we analyze the distribution of sterols through a microbial mat. This provides insight into how variations in biological and nonbiological factors affect the preservation of sterols in modern and ancient microbial mats.
Ying Wu, Kun Zhu, Jing Zhang, Moritz Müller, Shan Jiang, Aazani Mujahid, Mohd Fakharuddin Muhamad, and Edwin Sien Aun Sia
Biogeosciences, 16, 4517–4533, https://doi.org/10.5194/bg-16-4517-2019, https://doi.org/10.5194/bg-16-4517-2019, 2019
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Our understanding of terrestrial organic matter (TOM) in tropical peat-draining rivers remains limited, especially in Southeast Asia. We explored the characteristics of TOM via bulk parameters and lignin phenols of sediment in Malaysia. This showed that the most important plant source of the organic matter in these rivers is woody angiosperm C3 plants with limited diagenetic alteration. This slower degradation of TOM may be a link to higher total nitrogen content, especially for the small river.
Caitlyn R. Witkowski, Sylvain Agostini, Ben P. Harvey, Marcel T. J. van der Meer, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 16, 4451–4461, https://doi.org/10.5194/bg-16-4451-2019, https://doi.org/10.5194/bg-16-4451-2019, 2019
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Carbon dioxide concentrations (pCO2) in the atmosphere play an integral role in Earth system dynamics, especially climate. Past climates help us understand future ones, but reconstructing pCO2 over the geologic record remains a challenge. This research demonstrates new approaches for exploring past pCO2 via the carbon isotope fractionation in general algal lipids, which we test over a high CO2 gradient from a naturally occurring CO2 seep.
Yongli Zhou, Patrick Martin, and Moritz Müller
Biogeosciences, 16, 2733–2749, https://doi.org/10.5194/bg-16-2733-2019, https://doi.org/10.5194/bg-16-2733-2019, 2019
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We found that peatlands in coastal Sarawak, Borneo, export extremely humified organic matter, which dominates the riverine organic matter pool and conservatively mixes with seawater, while the freshly produced fraction is low and stable in concentration at all salinities. We estimated that terrigenous fractions, which showed high photolability, still account for 20 % of the coastal dissolved organic carbon pool, implying the importance of peat-derived organic matter in the coastal carbon cycle.
Kristin Doering, Claudia Ehlert, Philippe Martinez, Martin Frank, and Ralph Schneider
Biogeosciences, 16, 2163–2180, https://doi.org/10.5194/bg-16-2163-2019, https://doi.org/10.5194/bg-16-2163-2019, 2019
Alexandra N. Loginova, Sören Thomsen, Marcus Dengler, Jan Lüdke, and Anja Engel
Biogeosciences, 16, 2033–2047, https://doi.org/10.5194/bg-16-2033-2019, https://doi.org/10.5194/bg-16-2033-2019, 2019
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High primary production in the Peruvian upwelling system is followed by rapid heterotrophic utilization of organic matter and supports the formation of one of the most intense oxygen minimum zones (OMZs) in the world. Here, we estimated vertical fluxes of oxygen and dissolved organic matter (DOM) from the surface to the OMZ. Our results suggest that DOM remineralization substantially reduces oxygen concentration in the upper water column and controls the shape of the upper oxycline.
Carolina Cisternas-Novoa, Frédéric A. C. Le Moigne, and Anja Engel
Biogeosciences, 16, 927–947, https://doi.org/10.5194/bg-16-927-2019, https://doi.org/10.5194/bg-16-927-2019, 2019
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We investigate the composition and vertical fluxes of POM in two deep basins of the Baltic Sea (GB: Gotland Basin and LD: Landsort Deep). The two basins showed different O2 regimes resulting from the intrusion of oxygen-rich water from the North Sea that ventilated the deep waters in GB, but not in LD.
In GB, O2 intrusions lead to a high abundance of manganese oxides that aggregate with POM, altering its composition and vertical flux and contributing to a higher POC transfer efficiency in GB.
Marina Zamanillo, Eva Ortega-Retuerta, Sdena Nunes, Pablo Rodríguez-Ros, Manuel Dall'Osto, Marta Estrada, Maria Montserrat Sala, and Rafel Simó
Biogeosciences, 16, 733–749, https://doi.org/10.5194/bg-16-733-2019, https://doi.org/10.5194/bg-16-733-2019, 2019
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Many marine microorganisms produce polysaccharide-rich transparent exopolymer particles (TEPs) for rather unknown reasons but with important consequences for the ocean carbon cycle, sea–air gas exchange and formation of organic aerosols. Here we compare surface–ocean distributions of TEPs and physical, chemical and biological variables along a N–S transect in the Atlantic Ocean. Our data suggest that phytoplankton and not bacteria are the main TEP producers, and solar radiation acts as a sink.
Cited articles
Becker, K. W., Lipp, J. S., Versteegh, G. J. M., Wörmer, L., and Hinrichs,
K.-U.: Rapid and simultaneous analysis of three molecular sea surface
temperature proxies and application to sediments from the Sea of Marmara,
Org. Geochem., 85, 42–53, https://doi.org/10.1016/j.orggeochem.2015.04.008,
2015.
Becker, K. W., Elling, F. J., Yoshinaga, M. Y., Söllinger, A., Urich, T.,
and Hinrichs, K.-U.: Unusual butane- and pentanetriol-based tetraether lipids in
Methanomassiliicoccus luminyensis, a representative of the seventh order of methanogens, Appl. Environ.
Microb., 82, 4505–4516,
https://doi.org/10.1128/AEM.00772-16, 2016.
Borrel, G., Parisot, N., Harris, H. M., Peyretaillade, E., Gaci, N., Tottey,
W., Bardot, O., Raymann, K., Gribaldo, S., Peyret, P., O'Toole, P. W., and
Brugère, J.-F.: Comparative genomics highlights the unique biology of
Methanomassiliicoccales, a Thermoplasmatales-related seventh order of
methanogenic archaea that encodes pyrrolysine, BMC Genomics, 15, 679,
https://doi.org/10.1186/1471-2164-15-679, 2014.
Bradley, J. A., Amend, J. P., and LaRowe, D. E.: Survival of the fewest: Microbial
dormancy and maintenance in marine sediments through deep time, Geobiology,
17, 43–59, https://doi.org/10.1111/gbi.12313, 2019.
Chen, I.-M. A., Chu, K., Palaniappan, K., Pillay, M., Ratner, A., Huang, J.,
Huntemann, M., Varghese, N., White, J. R., Seshadri, R., Smirnova, T.,
Kirton, E., Jungbluth, S. P., Woyke, T., Eloe-Fadrosh, E. A., Ivanova, N. N., and
Kyrpides, N. C.: IMG/M v.5.0: an integrated data management and comparative
analysis system for microbial genomes and microbiomes, Nucleic Acids Res.,
47, D666–D677, https://doi.org/10.1093/nar/gky901, 2019.
Coffinet, S., Meador, T., Mühlena, L., Becker, K. W., Schröder, J. M., Zhu, Q. Z., Lipp, J. S., Heuer, V. B., Crump, M. P., and Hinrichs, K.-U.: Absolute concentrations of BDGTs and PDGTs in sediments from expeditions M84/1 and POS450, PANGAEA, https://doi.org/10.1594/PANGAEA.907964, 2019.
De Rosa, M. and Gambacorta, A.: The lipids of archaebacteria, Prog. Lipid Res.
27, 153–175, https://doi.org/10.1016/0163-7827(88)90011-2, 1988.
Dridi, B., Fardeau, M.-L., Ollivier, B., Raoult, D., and Drancourt, M.:
Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces,
Int. J. Syst. Evol. Microbiol., 62, 1902–1907,
https://doi.org/10.1099/ijs.0.033712-0, 2012.
Elling, F. J., Könneke, M., Lipp, J. S., Becker, K. W., Gagen, E. J., and
Hinrichs, K.-U.: Effects of growth phase on the membrane lipid composition
of the thaumarchaeon Nitrosopumilus maritimus and their implications for archaeal lipid
distributions in the marine environment, Geochim. Cosmochim. Ac., 141,
579–597, https://doi.org/10.1016/j.gca.2014.07.005, 2014.
Elling, F. J., Könneke, M., Nicol, G. W., Stieglmeier, M., Bayer, B.,
Spieck, E., de la Torre, J. R., Becker, K. W., Thomm, M., Prosser, J. I.,
Herndl, G. J., Schleper, C., and Hinrichs, K.-U.: Chemotaxonomic characterisation
of the thaumarchaeal lipidome, Environ. Microbiol., 19, 2681–2700,
https://doi.org/10.1111/1462-2920.13759, 2017.
Evans, P. N., Parks, D. H., Chadwick, G. L., Robbins, S. J., Orphan, V. J.,
Golding, S. D., and Tyson, G. W.: Methane metabolism in the archaeal phylum
Bathyarchaeota revealed by genome-centric metagenomics, Science, 350,
434–438, https://doi.org/10.1126/science.aac7745, 2015.
Hayes, J. M.: Fractionation of carbon and hydrogen isotopes in biosynthetic
processes, Rev. Mineral. Geochem., 43, 225–277,
https://doi.org/10.2138/gsrmg.43.1.225, 2001.
Heuer, V. B., Aiello, I. W., Elvert, M., Goldenstein, N. I., Goldhammer, T.,
Könneke, M., Liu, X., Pape, T., Schmidt, F., Wendt, J., and Zhuang, G.:
Report and preliminary results of R/V POSEIDON cruise POS450, DARCSEAS II –
Deep subseafloor Archaea in the Western Mediterranean Sea: carbon cycle,
life strategies, and role in sedimentary ecosystems, Barcelona (Spain) –
Malaga (Spain), 2–13 April 2013 (No. 305), Berichte, MARUM – Zentrum
für Marine Umweltwissenschaften, Fachbereich Geowissenschaften,
Universität Bremen, Bremen, 2014.
Hinrichs, K.-U., Hayes, J. M., Sylva, S. P., Brewer, P. G., and DeLong, E. F.:
Methane-consuming archaebacteria in marine sediments, Nature, 398, 802–805,
https://doi.org/10.1038/19751, 1999.
Hinrichs, K.-U., Summons, R. E., Orphan, V., Sylva, S. P., and Hayes, J. M.:
Molecular and isotopic analysis of anaerobic methane-oxidizing communities
in marine sediments, Org. Geochem., 31, 1685–1701,
https://doi.org/10.1016/S0146-6380(00)00106-6, 2000.
Hoefs, M. J. L., Schouten, S., Leeuw, J. W. D., King, L. L., Wakeham, S. G., and
Damsté, J. S. S.: Ether lipids of planktonic Archaea in the marine water
column, Appl. Environ. Microb., 63, 3090–3095, 1997.
Hoehler, T. M. and Jørgensen, B. B.: Microbial life under extreme energy
limitation, Nat. Rev. Microbiol., 11, 83–94,
https://doi.org/10.1038/nrmicro2939, 2013.
Huguet, C., Hopmans, E. C., Febo-Ayala, W., Thompson, D. H., Sinninghe Damsté, J. S., and Schouten, S.: An improved method to determine the absolute abundance of glycerol dibiphytanyl glycerol tetraether lipids, Org. Geochem., 37, 1036–1041, https://doi.org/10.1016/j.orggeochem.2006.05.008, 2006.
Kates, M.: The phytanyl ether-linked polar lipids and isoprenoid neutral
lipids of extremely halophilic bacteria, Prog. Chem. Fats Other Lipids, 15,
301–342, https://doi.org/10.1016/0079-6832(77)90011-8, 1977.
Kellermann, M. Y., Wegener, G., Elvert, M., Yoshinaga, M. Y., Lin, Y.-S.,
Holler, T., Mollar, X. P., Knittel, K., and Hinrichs, K.-U.: Autotrophy as a
predominant mode of carbon fixation in anaerobic methane-oxidizing microbial
communities, P. Natl. Acad. Sci. USA, 109, 19321–19326,
https://doi.org/10.1073/pnas.1208795109, 2012.
Knappy, C., Barillà, D., Chong, J., Hodgson, D., Morgan, H., Suleman,
M., Tan, C., Yao, P., and Keely, B.: Mono-, di- and trimethylated homologues of
isoprenoid tetraether lipid cores in archaea and environmental samples: mass
spectrometric identification and significance, J. Mass Spectrom., 50,
1420–1432, https://doi.org/10.1002/jms.3709, 2015.
Knappy, C. S., Yao, P., Pickering, M. D., and Keely, B. J.: Identification of
homoglycerol- and dihomoglycerol-containing isoprenoid tetraether lipid
cores in aquatic sediments and a soil, Org. Geochem., 76, 146–156,
https://doi.org/10.1016/j.orggeochem.2014.06.003, 2014.
Koga, Y. and Morii, H.: Recent advances in structural research on ether lipids
from Archaea including comparative and physiological aspects, Biosci.
Biotech. Bioch., 69, 2019–2034, https://doi.org/10.1271/bbb.69.2019,
2005.
Koga, Y. and Morii, H.: Biosynthesis of ether-type polar lipids in Archaea and
evolutionary considerations, Microbiol. Mol. Biol. R., 71, 97–120,
https://doi.org/10.1128/MMBR.00033-06, 2007.
Koga, Y., Nishihara, M., Morii, H., and Akagawa-Matsushita, M.: Ether polar
lipids of methanogenic bacteria: structures, comparative aspects, and
biosynthesis, Microbiol. Rev., 57, 164–182, 1993.
Lang, K., Schuldes, J., Klingl, A., Poehlein, A., Daniel, R., and Brune, A.: New
mode of energy metabolism in the seventh order of methanogens as revealed by
comparative genome analysis of “Candidatus Methanoplasma termitum”, Appl. Environ. Microb., 81,
1338–1352, https://doi.org/10.1128/AEM.03389-14, 2015.
Lazar, C. S., Biddle, J. F., Meador, T. B., Blair, N., Hinrichs, K.-U., and Teske,
A. P.: Environmental controls on intragroup diversity of the uncultured
benthic archaea of the miscellaneous Crenarchaeotal group lineage naturally
enriched in anoxic sediments of the White Oak River estuary (North Carolina,
USA), Environ. Microbiol., 17, 2228–2238,
https://doi.org/10.1111/1462-2920.12659, 2015.
Lazar, C. S., Baker, B. J., Seitz, K., Hyde, A. S., Dick, G. J., Hinrichs,
K.-U., and Teske, A. P.: Genomic evidence for distinct carbon substrate
preferences and ecological niches of Bathyarchaeota in estuarine sediments,
Environ. Microbiol., 18, 1200–1211, https://doi.org/10.1111/1462-2920.13142,
2016.
Liu, X.-L., Summons, R. E., and Hinrichs, K.-U.: Extending the known range of
glycerol ether lipids in the environment: structural assignments based on
tandem mass spectral fragmentation patterns, Rapid Commun. Mass Sp.,
26, 2295–2302, https://doi.org/10.1002/rcm.6355, 2012.
Lloyd, K. G., Schreiber, L., Petersen, D. G., Kjeldsen, K. U., Lever, M. A.,
Steen, A. D., Stepanauskas, R., Richter, M., Kleindienst, S., Lenk, S.,
Schramm, A., and Jørgensen, B. B.: Predominant archaea in marine sediments
degrade detrital proteins, Nature, 496, 215–218,
https://doi.org/10.1038/nature12033, 2013.
Lombard, J., López-García, P., and Moreira, D.: The early evolution of
lipid membranes and the three domains of life, Nat. Rev. Microbiol., 10,
507–515, https://doi.org/10.1038/nrmicro2815, 2012.
Londry, K. L., Dawson, K. G., Grover, H. D., Summons, R. E., and Bradley, A. S.:
Stable carbon isotope fractionation between substrates and products of
Methanosarcina barkeri, Org. Geochem., 39, 608–621,
https://doi.org/10.1016/j.orggeochem.2008.03.002, 2008.
Meador, T. B., Gagen, E. J., Loscar, M. E., Goldhammer, T., Yoshinaga, M. Y.,
Wendt, J., Thomm, M., and Hinrichs, K.-U.: Thermococcus kodakarensis modulates its polar membrane lipids
and elemental composition according to growth stage and phosphate
availability, Front. Microbiol., 5, 10, https://doi.org/10.3389/fmicb.2014.00010,
2014.
Meador, T. B., Bowles, M., Lazar, C. S., Zhu, C., Teske, A., and Hinrichs, K.-U.:
The archaeal lipidome in estuarine sediment dominated by members of the
Miscellaneous Crenarchaeotal Group: Archaeal lipid distributions in the WOR
estuary, Environ. Microbiol., 17, 2441–2458,
https://doi.org/10.1111/1462-2920.12716, 2015.
Mook, W. G., Bommerson, J. C., and Staverman, W. H.: Carbon isotope fractionation
between dissolved bicarbonate and gaseous carbon dioxide, Earth Planet. Sc.
Lett., 22, 169–176, https://doi.org/10.1016/0012-821X(74)90078-8, 1974.
Pancost, R. D., Bouloubassi, I., Aloisi, G., Sinninghe Damsté, J. S., and the Medinaut Shipboard Scientific Party: Three series of non-isoprenoidal dialkyl
glycerol diethers in cold-seep carbonate crusts, Org. Geochem., 32, 695–707,
https://doi.org/10.1016/S0146-6380(01)00015-8, 2001.
Paściak, M., Holst, O., Lindner, B., Mordarska, H., and Gamian, A.: Novel
bacterial polar lipids containing ether-linked alkyl chains, the structures
and biological properties of the four major glycolipids from
Propionibacterium propionicum PCM 2431 (ATCC 14157 T), J. Biol. Chem., 278, 3948–3956,
https://doi.org/10.1074/jbc.M206013200, 2003.
Pearson, A.: Pathways of carbon assimilation and their impact on organic
matter values δ13C, in: Handbook of Hydrocarbon and Lipid
Microbiology, Springer, Berlin, Heidelberg, 143–156,
https://doi.org/10.1007/978-3-540-77587-4_9, 2010.
Pearson, A., McNichol, A. P., Benitez-Nelson, B. C., Hayes, J. M., and Eglinton,
T. I.: Origins of lipid biomarkers in Santa Monica Basin surface sediment: A
case study using compound-specific Δ14C analysis, Geochim.
Cosmochim. Ac., 65, 3123–3137, 2001.
Pitcher, A., Hopmans, E. C., Schouten, S., and Sinninghe Damsté, J. S.:
Separation of core and intact polar archaeal tetraether lipids using silica
columns: Insights into living and fossil biomass contributions, Org.
Geochem., 40, 12–19, https://doi.org/10.1016/j.orggeochem.2008.09.008,
2009.
Reeburgh, W. S.: Oceanic methane biogeochemistry, Chem. Rev., 107, 486–513,
https://doi.org/10.1021/cr050362v, 2007.
Rütters, H., Sass, H., Cypionka, H., and Rullkötter, J.: Monoalkylether
phospholipids in the sulfate-reducing bacteria Desulfosarcina variabilis and Desulforhabdus amnigenus, Arch. Microbiol., 176,
435–442, https://doi.org/10.1007/s002030100343, 2001.
Schmidt, F., Koch, B. P., Goldhammer, T., Elvert, M., Witt, M., Lin, Y.-S.,
Wendt, J., Zabel, M., Heuer, V. B., and Hinrichs, K.-U.: Unraveling signatures of
biogeochemical processes and the depositional setting in the molecular
composition of pore water DOM across different marine environments, Geochim.
Cosmochim. Ac., 207, 57–80, https://doi.org/10.1016/j.gca.2017.03.005,
2017.
Schouten, S., Hopmans, E. C., Pancost, R. D., and Damsté, J. S. S.: Widespread
occurrence of structurally diverse tetraether membrane lipids: Evidence for
the ubiquitous presence of low-temperature relatives of hyperthermophiles,
P. Natl. Acad. Sci. USA, 97, 14421–14426,
https://doi.org/10.1073/pnas.97.26.14421, 2000.
Schouten, S., Hopmans, E. C., and Sinninghe Damsté, J. S.: The organic
geochemistry of glycerol dialkyl glycerol tetraether lipids: A review, Org.
Geochem., 54, 19–61, https://doi.org/10.1016/j.orggeochem.2012.09.006, 2013.
Schröder, J. M.: Intact polar lipids in marine sediments: Improving
analytical protocols and assessing planktonic and benthic sources, PhD
thesis, Universität Bremen, Bremen, Germany, 2015.
Sinninghe Damsté, J. S., Schouten, S., Hopmans, E. C., van Duin, A. C. T., and
Geenevasen, J. A. J.: Crenarchaeol the characteristic core glycerol
dibiphytanyl glycerol tetraether membrane lipid of cosmopolitan pelagic
crenarchaeota, J. Lipid Res., 43, 1641–1651,
https://doi.org/10.1194/jlr.M200148-JLR200, 2002.
Söllinger, A., Schwab, C., Weinmaier, T., Loy, A., Tveit, A. T.,
Schleper, C., and Urich, T.: Phylogenetic and genomic analysis of
Methanomassiliicoccales in wetlands and animal intestinal tracts reveals
clade-specific habitat preferences, FEMS Microbiol. Ecol., 92, fiv149,
https://doi.org/10.1093/femsec/fiv149, 2016.
Sturt, H. F., Summons, R. E., Smith, K., Elvert, M., and Hinrichs, K.-U.: Intact
polar membrane lipids in prokaryotes and sediments deciphered by
high-performance liquid chromatography/electrospray ionization multistage
mass spectrometry – new biomarkers for biogeochemistry and microbial
ecology, Rapid Commun. Mass Sp., 18, 617–628,
https://doi.org/10.1002/rcm.1378, 2004.
Summons, R. E., Franzmann, P. D., and Nichols, P. D.: Carbon isotopic fractionation
associated with methylotrophic methanogenesis, Org. Geochem., 28, 465–475,
https://doi.org/10.1016/S0146-6380(98)00011-4, 1998.
Vinçon-Laugier, A., Grossi, V., Pacton, M., Escarguel, G., and
Cravo-Laureau, C.: The alkyl glycerol ether lipid composition of
heterotrophic sulfate reducing bacteria strongly depends on growth
substrate, Org. Geochem., 98, 141–154,
https://doi.org/10.1016/j.orggeochem.2016.05.015, 2016.
Weijers, J. W. H., Schouten, S., Hopmans, E. C., Geenevasen, J. A. J., David,
O. R. P., Coleman, J. M., Pancost, R. D., and Sinninghe Damsté, J. S.: Membrane
lipids of mesophilic anaerobic bacteria thriving in peats have typical
archaeal traits, Environ. Microbiol., 8, 648–657,
https://doi.org/10.1111/j.1462-2920.2005.00941.x, 2006.
Welander, P. V., Coleman, M. L., Sessions, A. L., Summons, R. E., and Newman, D. K.:
Identification of a methylase required for 2-methylhopanoid production and
implications for the interpretation of sedimentary hopanes, P. Natl. Acad. Sci. USA, 107, 8537–8542, https://doi.org/10.1073/pnas.0912949107, 2010.
Wessel, P., Smith, W. H. F., Scharroo, R., Luis, J., and Wobbe, F.: Generic
mapping tools: Improved version released, Eos, 94, 409–410,
https://doi.org/10.1002/2013EO450001, 2013.
Woese, C. R., Kandler, O., and Wheelis, M. L.: Towards a natural system of
organisms: Proposal for the domains Archaea, Bacteria, and Eucarya, P. Natl. Acad. Sci. USA, 87, 4576–4579, 1990.
Yu, T., Wu, W., Liang, W., Lever, M. A., Hinrichs, K.-U., and Wang, F.: Growth of
sedimentary Bathyarchaeota on lignin as an energy source, P. Natl. Acad. Sci. USA, 115, 6022–6027, https://doi.org/10.1073/pnas.1718854115, 2018.
Zabel, M.: RV METEOR, Cruise Report M84/L1, Biogeochemistry and methane
hydrates of the Black Sea; Oceanography of the Mediterranean; Shelf
sedimentation and cold water carbonates, DFG Senatskommission für
Ozeanographie c/o MARUM – Zentrum für Marine Umweltwissenschaften,
Bremen, 2011.
Zeng, Z., Liu, X.-L., Wei, J. H., Summons, R. E., and Welander, P. V.:
Calditol-linked membrane lipids are required for acid tolerance in
Sulfolobus acidocaldarius, P. Natl. Acad. Sci. USA, 115, 12932–12937,
https://doi.org/10.1073/pnas.1814048115, 2018.
Zhou, S., Alkhalaf, L. M., de los Santos, E. L., and Challis, G. L.: Mechanistic
insights into class B radical-S-adenosylmethionine methylases: ubiquitous
tailoring enzymes in natural product biosynthesis, Curr. Opin. Chem. Biol.,
35, 73–79, https://doi.org/10.1016/j.cbpa.2016.08.021, 2016.
Zhou, Z., Pan, J., Wang, F., Gu, J.-D., and Li, M.: Bathyarchaeota: Globally
distributed metabolic generalists in anoxic environments, FEMS Microbiol.
Rev., 42, 639–655, https://doi.org/10.1093/femsre/fuy023, 2018.
Zhu, C., Lipp, J. S., Wörmer, L., Becker, K. W., Schröder, J., and
Hinrichs, K.-U.: Comprehensive glycerol ether lipid fingerprints through a
novel reversed phase liquid chromatography–mass spectrometry protocol, Org.
Geochem., 65, 53–62, https://doi.org/10.1016/j.orggeochem.2013.09.012, 2013.
Zhu, C., Meador, T. B., Dummann, W., and Hinrichs, K.-U.: Identification of
unusual butanetriol dialkyl glycerol tetraether and pentanetriol dialkyl
glycerol tetraether lipids in marine sediments, Rapid Commun. Mass Sp.,
28, 332–338, https://doi.org/10.1002/rcm.6792, 2014.
Short summary
This study deals with two membrane lipids called BDGTs and PDGTs. Membrane lipids are molecules forming the cell envelope of all organisms. Different organisms produce different lipids thus they can be used to detect the presence of specific organisms in the environment. We analyzed the structure of these new lipids and looked for potential producers. We found that they are likely made by microbes emitting methane below the sediment surface and could be used to track these specific microbes.
This study deals with two membrane lipids called BDGTs and PDGTs. Membrane lipids are molecules...
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