Articles | Volume 17, issue 23
https://doi.org/10.5194/bg-17-5919-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-17-5919-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
02 Dec 2020
Research article |
| 02 Dec 2020
| 02 Dec 2020
Biogeochemical impact of cable bacteria on coastal Black Sea sediment
Martijn Hermans
CORRESPONDING AUTHOR
Department of Earth Sciences, Faculty of Geosciences, Utrecht University, 3584 CB Utrecht, the Netherlands
now at: Aquatic Biogeochemistry Research Unit (ABRU), Ecosystems and Environment Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, 00790 Helsinki, Finland
Nils Risgaard-Petersen
Center for Geomicrobiology, Section for Microbiology, Department of
Bioscience, Aarhus University, 8000 Aarhus, Denmark
Center for Electromicrobiology, Section for Microbiology, Department of Bioscience, Aarhus University, 8000 Aarhus, Denmark
Filip J. R. Meysman
Centre of Excellence for Microbial Systems Technology, Department of Biology, University of Antwerp, 2610 Wilrijk, Belgium
Department of Biotechnology, Delft University of Technology, 2629 HZ Delft, the Netherlands
Caroline P. Slomp
Department of Earth Sciences, Faculty of Geosciences, Utrecht University, 3584 CB Utrecht, the Netherlands
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Luna J. J. Geerts, Astrid Hylén, and Filip J. R. Meysman
EGUsphere, https://doi.org/10.5194/egusphere-2024-1824, https://doi.org/10.5194/egusphere-2024-1824, 2024
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Coastal enhanced silicate weathering (CESW) with olivine is a promising method for capturing CO2 from the atmosphere, yet studies in field conditions are lacking. We bridge the gap between theoretical studies and the real-world environment by estimating the predictability of CESW parameters and identifying aspects to consider when applying CESW. A major source of uncertainty is the lack of experimental studies with sediment, which can heavily influence the speed and efficiency of CO2 drawdown.
Robin Klomp, Olga M. Żygadłowska, Mike S. M. Jetten, Véronique E. Oldham, Niels A. G. M. van Helmond, Caroline P. Slomp, and Wytze K. Lenstra
EGUsphere, https://doi.org/10.5194/egusphere-2024-1706, https://doi.org/10.5194/egusphere-2024-1706, 2024
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In marine sediments, dissolved Mn is present as either Mn(III) or Mn(II). We apply a reactive transport model to geochemical data for a seasonally anoxic and sulfidic coastal basin to determine the pathways of formation and removal of dissolved Mn(III) in the sediment. We demonstrate a critical role for reactions with Fe(II) and show evidence for substantial benthic release of dissolved Mn(III). Given the mobility of Mn(III), these findings have important implications for marine Mn cycling.
Ulf Riebesell, Daniela Basso, Sonja Geilert, Andrew W. Dale, and Matthias Kreuzburg
State Planet, 2-oae2023, 6, https://doi.org/10.5194/sp-2-oae2023-6-2023, https://doi.org/10.5194/sp-2-oae2023-6-2023, 2023
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Mesocosm experiments represent a highly valuable tool in determining the safe operating space of ocean alkalinity enhancement (OAE) applications. By combining realism and biological complexity with controllability and replication, they provide an ideal OAE test bed and a critical stepping stone towards field applications. Mesocosm approaches can also be helpful in testing the efficacy, efficiency and permanence of OAE applications.
Wout Krijgsman, Iuliana Vasiliev, Anouk Beniest, Timothy Lyons, Johanna Lofi, Gabor Tari, Caroline P. Slomp, Namik Cagatay, Maria Triantaphyllou, Rachel Flecker, Dan Palcu, Cecilia McHugh, Helge Arz, Pierre Henry, Karen Lloyd, Gunay Cifci, Özgür Sipahioglu, Dimitris Sakellariou, and the BlackGate workshop participants
Sci. Dril., 31, 93–110, https://doi.org/10.5194/sd-31-93-2022, https://doi.org/10.5194/sd-31-93-2022, 2022
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BlackGate seeks to MSP drill a transect to study the impact of dramatic hydrologic change in Mediterranean–Black Sea connectivity by recovering the Messinian to Holocene (~ 7 Myr) sedimentary sequence in the North Aegean, Marmara, and Black seas. These archives will reveal hydrographic, biotic, and climatic transitions studied by a broad scientific community spanning the stratigraphic, tectonic, biogeochemical, and microbiological evolution of Earth’s most recent saline and anoxic giant.
Karol Kuliński, Gregor Rehder, Eero Asmala, Alena Bartosova, Jacob Carstensen, Bo Gustafsson, Per O. J. Hall, Christoph Humborg, Tom Jilbert, Klaus Jürgens, H. E. Markus Meier, Bärbel Müller-Karulis, Michael Naumann, Jørgen E. Olesen, Oleg Savchuk, Andreas Schramm, Caroline P. Slomp, Mikhail Sofiev, Anna Sobek, Beata Szymczycha, and Emma Undeman
Earth Syst. Dynam., 13, 633–685, https://doi.org/10.5194/esd-13-633-2022, https://doi.org/10.5194/esd-13-633-2022, 2022
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The paper covers the aspects related to changes in carbon, nitrogen, and phosphorus (C, N, P) external loads; their transformations in the coastal zone; changes in organic matter production (eutrophication) and remineralization (oxygen availability); and the role of sediments in burial and turnover of C, N, and P. Furthermore, this paper also focuses on changes in the marine CO2 system, the structure of the microbial community, and the role of contaminants for biogeochemical processes.
Tanya J. R. Lippmann, Michiel H. in 't Zandt, Nathalie N. L. Van der Putten, Freek S. Busschers, Marc P. Hijma, Pieter van der Velden, Tim de Groot, Zicarlo van Aalderen, Ove H. Meisel, Caroline P. Slomp, Helge Niemann, Mike S. M. Jetten, Han A. J. Dolman, and Cornelia U. Welte
Biogeosciences, 18, 5491–5511, https://doi.org/10.5194/bg-18-5491-2021, https://doi.org/10.5194/bg-18-5491-2021, 2021
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This paper is a step towards understanding the basal peat ecosystem beneath the North Sea. Plant remains followed parallel sequences. Methane concentrations were low with local exceptions, with the source likely being trapped pockets of millennia-old methane. Microbial community structure indicated the absence of a biofilter and was diverse across sites. Large carbon stores in the presence of methanogens and in the absence of methanotrophs have the potential to be metabolized into methane.
Constance Choquel, Emmanuelle Geslin, Edouard Metzger, Helena L. Filipsson, Nils Risgaard-Petersen, Patrick Launeau, Manuel Giraud, Thierry Jauffrais, Bruno Jesus, and Aurélia Mouret
Biogeosciences, 18, 327–341, https://doi.org/10.5194/bg-18-327-2021, https://doi.org/10.5194/bg-18-327-2021, 2021
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Marine microorganisms such as foraminifera are able to live temporarily without oxygen in sediments. In a Swedish fjord subjected to seasonal oxygen scarcity, a change in fauna linked to the decrease in oxygen and the increase in an invasive species was shown. The invasive species respire nitrate until 100 % of the nitrate porewater in the sediment and could be a major contributor to nitrogen balance in oxic coastal ecosystems. But prolonged hypoxia creates unfavorable conditions to survive.
Niels A. G. M. van Helmond, Elizabeth K. Robertson, Daniel J. Conley, Martijn Hermans, Christoph Humborg, L. Joëlle Kubeneck, Wytze K. Lenstra, and Caroline P. Slomp
Biogeosciences, 17, 2745–2766, https://doi.org/10.5194/bg-17-2745-2020, https://doi.org/10.5194/bg-17-2745-2020, 2020
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We studied the removal of phosphorus (P) and nitrogen (N) in the eutrophic Stockholm archipelago (SA). High sedimentation rates and sediment P contents lead to high P burial. Benthic denitrification is the primary nitrate-reducing pathway. Together, these mechanisms limit P and N transport to the open Baltic Sea. We expect that further nutrient load reduction will contribute to recovery of the SA from low-oxygen conditions and that the sediments will continue to remove part of the P and N loads.
Julien Richirt, Bettina Riedel, Aurélia Mouret, Magali Schweizer, Dewi Langlet, Dorina Seitaj, Filip J. R. Meysman, Caroline P. Slomp, and Frans J. Jorissen
Biogeosciences, 17, 1415–1435, https://doi.org/10.5194/bg-17-1415-2020, https://doi.org/10.5194/bg-17-1415-2020, 2020
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The paper presents the response of benthic foraminiferal communities to seasonal absence of oxygen coupled with the presence of hydrogen sulfide, considered very harmful for several living organisms.
Our results suggest that the foraminiferal community mainly responds as a function of the duration of the adverse conditions.
This knowledge is especially useful to better understand the ecology of benthic foraminifera but also in the context of palaeoceanographic interpretations.
Nicole M. J. Geerlings, Eva-Maria Zetsche, Silvia Hidalgo-Martinez, Jack J. Middelburg, and Filip J. R. Meysman
Biogeosciences, 16, 811–829, https://doi.org/10.5194/bg-16-811-2019, https://doi.org/10.5194/bg-16-811-2019, 2019
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Multicellular cable bacteria form long filaments that can reach lengths of several centimeters. They affect the chemistry and mineralogy of their surroundings and vice versa. How the surroundings affect the cable bacteria is investigated. They show three different types of biomineral formation: (1) a polymer containing phosphorus in their cells, (2) a sheath of clay surrounding the surface of the filament and (3) the encrustation of a filament via a solid phase containing iron and phosphorus.
Erik Gustafsson, Mathilde Hagens, Xiaole Sun, Daniel C. Reed, Christoph Humborg, Caroline P. Slomp, and Bo G. Gustafsson
Biogeosciences, 16, 437–456, https://doi.org/10.5194/bg-16-437-2019, https://doi.org/10.5194/bg-16-437-2019, 2019
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This work highlights that iron (Fe) dynamics plays a key role in the release of alkalinity from sediments, as exemplified for the Baltic Sea. It furthermore demonstrates that burial of Fe sulfides should be included in alkalinity budgets of low-oxygen basins. The sedimentary alkalinity generation may undergo large changes depending on both organic matter loads and oxygen conditions. Enhanced release of alkalinity from the seafloor can increase the CO2 storage capacity of seawater.
Wytze K. Lenstra, Matthias Egger, Niels A. G. M. van Helmond, Emma Kritzberg, Daniel J. Conley, and Caroline P. Slomp
Biogeosciences, 15, 6979–6996, https://doi.org/10.5194/bg-15-6979-2018, https://doi.org/10.5194/bg-15-6979-2018, 2018
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We show that burial rates of phosphorus (P) in an estuary in the northern Baltic Sea are very high. We demonstrate that at high sedimentation rates, P retention in the sediment is related to the formation of vivianite. With a reactive transport model, we assess the sensitivity of sedimentary vivianite formation. We suggest that enrichments of iron and P in the sediment are linked to periods of enhanced riverine input of Fe, which subsequently strongly enhances P burial in coastal sediments.
Nikki Dijkstra, Mathilde Hagens, Matthias Egger, and Caroline P. Slomp
Biogeosciences, 15, 861–883, https://doi.org/10.5194/bg-15-861-2018, https://doi.org/10.5194/bg-15-861-2018, 2018
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We show that post-depositional formation of iron(II) phosphate as vivianite strongly alters the phosphorus record in sediments of the Bornholm Basin (Baltic Sea). These minerals began to precipitate in the lake sediments just after the last lake–marine transition ~ 7.5 kyr BP, migrated downwards and are now a stable feature. Formation of vivianite may affect sedimentary phosphorus records in other systems as well. This should be considered when using such records to reconstruct past environments.
Jassin Petersen, Christine Barras, Antoine Bézos, Carole La, Lennart J. de Nooijer, Filip J. R. Meysman, Aurélia Mouret, Caroline P. Slomp, and Frans J. Jorissen
Biogeosciences, 15, 331–348, https://doi.org/10.5194/bg-15-331-2018, https://doi.org/10.5194/bg-15-331-2018, 2018
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In Lake Grevelingen, a coastal ecosystem, foraminifera experience important temporal variations in oxygen concentration and in pore water manganese. The high resolution of LA-ICP-MS allows us to analyse the chambers of foraminiferal shells separately and to obtain signals from a series of calcification events. We estimate the variability in Mn/Ca observed within single shells due to biomineralization and show that a substantial part of the signal is related to environmental variability.
Ulrich Kotthoff, Jeroen Groeneveld, Jeanine L. Ash, Anne-Sophie Fanget, Nadine Quintana Krupinski, Odile Peyron, Anna Stepanova, Jonathan Warnock, Niels A. G. M. Van Helmond, Benjamin H. Passey, Ole Rønø Clausen, Ole Bennike, Elinor Andrén, Wojciech Granoszewski, Thomas Andrén, Helena L. Filipsson, Marit-Solveig Seidenkrantz, Caroline P. Slomp, and Thorsten Bauersachs
Biogeosciences, 14, 5607–5632, https://doi.org/10.5194/bg-14-5607-2017, https://doi.org/10.5194/bg-14-5607-2017, 2017
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We present reconstructions of paleotemperature, paleosalinity, and paleoecology from the Little Belt (Site M0059) over the past ~ 8000 years and evaluate the applicability of numerous proxies. Conditions were lacustrine until ~ 7400 cal yr BP. A transition to brackish–marine conditions then occurred within ~ 200 years. Salinity proxies rarely allowed quantitative estimates but revealed congruent results, while quantitative temperature reconstructions differed depending on the proxies used.
Matthias Egger, Peter Kraal, Tom Jilbert, Fatimah Sulu-Gambari, Célia J. Sapart, Thomas Röckmann, and Caroline P. Slomp
Biogeosciences, 13, 5333–5355, https://doi.org/10.5194/bg-13-5333-2016, https://doi.org/10.5194/bg-13-5333-2016, 2016
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By combining detailed geochemical analyses with diagenetic modeling, we provide new insights into how methane dynamics may strongly overprint burial records of iron, sulfur and phosphorus in marine systems subject to changes in organic matter loading or water column salinity. A better understanding of these processes will improve our ability to read ancient sediment records and thus to predict the potential consequences of global warming and human-enhanced inputs of nutrients to the ocean.
C. Lenz, T. Jilbert, D.J. Conley, M. Wolthers, and C.P. Slomp
Biogeosciences, 12, 4875–4894, https://doi.org/10.5194/bg-12-4875-2015, https://doi.org/10.5194/bg-12-4875-2015, 2015
M. Hagens, C. P. Slomp, F. J. R. Meysman, D. Seitaj, J. Harlay, A. V. Borges, and J. J. Middelburg
Biogeosciences, 12, 1561–1583, https://doi.org/10.5194/bg-12-1561-2015, https://doi.org/10.5194/bg-12-1561-2015, 2015
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This study looks at the combined impacts of hypoxia and acidification, two major environmental stressors affecting coastal systems, in a seasonally stratified basin. Here, the surface water experiences less seasonality in pH than the bottom water despite higher process rates. This is due to a substantial reduction in the acid-base buffering capacity of the bottom water as it turns hypoxic in summer. This highlights the crucial role of the buffering capacity as a modulating factor in pH dynamics.
A. Sluijs, L. van Roij, G. J. Harrington, S. Schouten, J. A. Sessa, L. J. LeVay, G.-J. Reichart, and C. P. Slomp
Clim. Past, 10, 1421–1439, https://doi.org/10.5194/cp-10-1421-2014, https://doi.org/10.5194/cp-10-1421-2014, 2014
I. Ruvalcaba Baroni, R. P. M. Topper, N. A. G. M. van Helmond, H. Brinkhuis, and C. P. Slomp
Biogeosciences, 11, 977–993, https://doi.org/10.5194/bg-11-977-2014, https://doi.org/10.5194/bg-11-977-2014, 2014
A. F. Bouwman, M. F. P. Bierkens, J. Griffioen, M. M. Hefting, J. J. Middelburg, H. Middelkoop, and C. P. Slomp
Biogeosciences, 10, 1–22, https://doi.org/10.5194/bg-10-1-2013, https://doi.org/10.5194/bg-10-1-2013, 2013
Related subject area
Biogeochemistry: Sediment
Reviews and syntheses: Tufa microbialites on rocky coasts – towards an integrated terminology
Seafloor sediment characterization improves estimates of organic carbon standing stocks: an example from the Eastern Shore Islands, Nova Scotia, Canada
How is particulate organic carbon transported through the river-fed submarine Congo Canyon to the deep sea?
Influence of minor hydrocarbon seepage on sulfur cycling in marine subsurface sediments and its significance for hydrocarbon reservoir detection
The fate of fixed nitrogen in Santa Barbara Basin sediments during seasonal anoxia
Dissolved Mn(III) is a key redox intermediate in sediments of a seasonally euxinic coastal basin
Unexpected scarcity of ANME Archaea in hydrocarbon seeps within Monterey Bay
Distinct oxygenation modes of the Gulf of Oman over the past 43 000 years – a multi-proxy approach
Potential impacts of cable bacteria activity on hard-shelled benthic foraminifera: implications for their interpretation as bioindicators or paleoproxies
Evidence of cryptic methane cycling and non-methanogenic methylamine consumption in the sulfate-reducing zone of sediment in the Santa Barbara Basin, California
Assessing global-scale organic matter reactivity patterns in marine sediments using a lognormal reactive continuum model
Deposit-feeding of Nonionellina labradorica (foraminifera) from an Arctic methane seep site and possible association with a methanotroph
Benthic silicon cycling in the Arctic Barents Sea: a reaction–transport model study
Long-term incubations provide insight into the mechanisms of anaerobic oxidation of methane in methanogenic lake sediments
Ideas and perspectives: Sea-level change, anaerobic methane oxidation, and the glacial–interglacial phosphorus cycle
Estimation of the natural background of phosphate in a lowland river using tidal marsh sediment cores
Geochemical consequences of oxygen diffusion from the oceanic crust into overlying sediments and its significance for biogeochemical cycles based on sediments of the northeast Pacific
Carbon sources of benthic fauna in temperate lakes across multiple trophic states
Deep-water inflow event increases sedimentary phosphorus release on a multi-year scale
Bioturbation has a limited effect on phosphorus burial in salt marsh sediments
Organic carbon characteristics in ice-rich permafrost in alas and Yedoma deposits, central Yakutia, Siberia
The control of hydrogen sulfide on benthic iron and cadmium fluxes in the oxygen minimum zone off Peru
Quantity and distribution of methane entrapped in sediments of calcareous, Alpine glacier forefields
Assessing the potential for non-turbulent methane escape from the East Siberian Arctic Shelf
Vertical transport of sediment-associated metals and cyanobacteria by ebullition in a stratified lake
Evidence of changes in sedimentation rate and sediment fabric in a low-oxygen setting: Santa Monica Basin, CA
Authigenic formation of Ca–Mg carbonates in the shallow alkaline Lake Neusiedl, Austria
Vivianite formation in ferruginous sediments from Lake Towuti, Indonesia
Impact of ambient conditions on the Si isotope fractionation in marine pore fluids during early diagenesis
Impact of small-scale disturbances on geochemical conditions, biogeochemical processes and element fluxes in surface sediments of the eastern Clarion–Clipperton Zone, Pacific Ocean
Acetate turnover and methanogenic pathways in Amazonian lake sediments
Benthic alkalinity and dissolved inorganic carbon fluxes in the Rhône River prodelta generated by decoupled aerobic and anaerobic processes
Small-scale heterogeneity of trace metals including rare earth elements and yttrium in deep-sea sediments and porewaters of the Peru Basin, southeastern equatorial Pacific
Organic matter contents and degradation in a highly trawled area during fresh particle inputs (Gulf of Castellammare, southwestern Mediterranean)
Identifying the core bacterial microbiome of hydrocarbon degradation and a shift of dominant methanogenesis pathways in the oil and aqueous phases of petroleum reservoirs of different temperatures from China
Effects of eutrophication on sedimentary organic carbon cycling in five temperate lakes
Evidence for microbial iron reduction in the methanic sediments of the oligotrophic southeastern Mediterranean continental shelf
Fracture-controlled fluid transport supports microbial methane-oxidizing communities at Vestnesa Ridge
Hydrothermal alteration of aragonitic biocarbonates: assessment of micro- and nanostructural dissolution–reprecipitation and constraints of diagenetic overprint from quantitative statistical grain-area analysis
Large variations in iron input to an oligotrophic Baltic Sea estuary: impact on sedimentary phosphorus burial
Vivianite formation in methane-rich deep-sea sediments from the South China Sea
Benthic archaea as potential sources of tetraether membrane lipids in sediments across an oxygen minimum zone
Carbon amendment stimulates benthic nitrogen cycling during the bioremediation of particulate aquaculture waste
Modelling biogeochemical processes in sediments from the north-western Adriatic Sea: response to enhanced particulate organic carbon fluxes
Carbon mineralization in Laptev and East Siberian sea shelf and slope sediment
Reviews and syntheses: to the bottom of carbon processing at the seafloor
Scotland's forgotten carbon: a national assessment of mid-latitude fjord sedimentary carbon stocks
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Sediment phosphorus speciation and mobility under dynamic redox conditions
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Thomas W. Garner, J. Andrew G. Cooper, Alan M. Smith, Gavin M. Rishworth, and Matt Forbes
Biogeosciences, 21, 4785–4807, https://doi.org/10.5194/bg-21-4785-2024, https://doi.org/10.5194/bg-21-4785-2024, 2024
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There is a diverse and often conflicting suite of terminologies, classifications, and nomenclature applicable to the study of terrestrial carbonate deposits and microbialites (deposits that wholly or primarily accrete as a result of microbial activity). We review existing schemes, identify duplication and redundancy, and present a new integrated approach applicable to tufa microbialites on rock coasts.
Catherine Brenan, Markus Kienast, Vittorio Maselli, Christopher K. Algar, Benjamin Misiuk, and Craig J. Brown
Biogeosciences, 21, 4569–4586, https://doi.org/10.5194/bg-21-4569-2024, https://doi.org/10.5194/bg-21-4569-2024, 2024
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Quantifying how much organic carbon is stored in seafloor sediments is key to assessing how human activities can accelerate the process of carbon storage at the seabed, an important consideration for climate change. This study uses seafloor sediment maps to model organic carbon content. Carbon estimates were 12 times higher when assuming the absence of detailed sediment maps, demonstrating that high-resolution seafloor mapping is critically important for improved estimates of organic carbon.
Sophie Hage, Megan L. Baker, Nathalie Babonneau, Guillaume Soulet, Bernard Dennielou, Ricardo Silva Jacinto, Robert G. Hilton, Valier Galy, François Baudin, Christophe Rabouille, Clément Vic, Sefa Sahin, Sanem Açikalin, and Peter J. Talling
Biogeosciences, 21, 4251–4272, https://doi.org/10.5194/bg-21-4251-2024, https://doi.org/10.5194/bg-21-4251-2024, 2024
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The land-to-ocean flux of particulate organic carbon (POC) is difficult to measure, inhibiting accurate modeling of the global carbon cycle. Here, we quantify the POC flux between one of the largest rivers on Earth (Congo) and the ocean. POC in the form of vegetation and soil is transported by episodic submarine avalanches in a 1000 km long canyon at up to 5 km water depth. The POC flux induced by avalanches is at least 3 times greater than that induced by the background flow related to tides.
Ellen Schnabel, Aurèle Vuillemin, Cédric C. Laczny, Benoit J. Kunath, André R. Soares, Rolando Di Primio, Jens Kallmeyer, and the PROSPECTOMICS Consortium
EGUsphere, https://doi.org/10.5194/egusphere-2024-1603, https://doi.org/10.5194/egusphere-2024-1603, 2024
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This study analyzed marine sediment samples from areas with and without minimal hydrocarbon seepage from reservoirs underneath. Depth profiles of dissolved chemical components in the pore water as well as molecular biological data revealed differences in microbial community composition and activity. These results indicate that even minor hydrocarbon seepage affects sedimentary biogeochemical cycling in marine sediments, potentially providing a new tool for detection of hydrocarbon reservoirs.
Xuefeng Peng, David J. Yousavich, Annie Bourbonnais, Frank Wenzhöfer, Felix Janssen, Tina Treude, and David L. Valentine
Biogeosciences, 21, 3041–3052, https://doi.org/10.5194/bg-21-3041-2024, https://doi.org/10.5194/bg-21-3041-2024, 2024
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Biologically available (fixed) nitrogen (N) is a limiting nutrient for life in the ocean. Under low-oxygen conditions, fixed N is either removed via denitrification or retained via dissimilatory nitrate reduction to ammonia (DNRA). Using in situ incubations in the Santa Barbara Basin, which undergoes seasonal anoxia, we found that benthic denitrification was the dominant nitrate reduction process, while nitrate availability and organic carbon content control the relative importance of DNRA.
Robin Klomp, Olga M. Żygadłowska, Mike S. M. Jetten, Véronique E. Oldham, Niels A. G. M. van Helmond, Caroline P. Slomp, and Wytze K. Lenstra
EGUsphere, https://doi.org/10.5194/egusphere-2024-1706, https://doi.org/10.5194/egusphere-2024-1706, 2024
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In marine sediments, dissolved Mn is present as either Mn(III) or Mn(II). We apply a reactive transport model to geochemical data for a seasonally anoxic and sulfidic coastal basin to determine the pathways of formation and removal of dissolved Mn(III) in the sediment. We demonstrate a critical role for reactions with Fe(II) and show evidence for substantial benthic release of dissolved Mn(III). Given the mobility of Mn(III), these findings have important implications for marine Mn cycling.
Amanda Clare Semler and Anne Elizabeth Dekas
EGUsphere, https://doi.org/10.5194/egusphere-2024-1377, https://doi.org/10.5194/egusphere-2024-1377, 2024
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Marine hydrocarbon seeps typically host subsurface microorganisms capable of degrading methane before it is emitted to the water column. Here we describe a seep in Monterey Bay which virtually lacks known methanotrophs and where biological consumption of methane at depth is undetected. Our findings suggest that some seeps are missing this critical biofilter and that seeps may be a more significant source of methane to the water column than previously realized.
Nicole Burdanowitz, Gerhard Schmiedl, Birgit Gaye, Philipp M. Munz, and Hartmut Schulz
Biogeosciences, 21, 1477–1499, https://doi.org/10.5194/bg-21-1477-2024, https://doi.org/10.5194/bg-21-1477-2024, 2024
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We analyse benthic foraminifera, nitrogen isotopes and lipids in a sediment core from the Gulf of Oman to investigate how the oxygen minimum zone (OMZ) and bottom water (BW) oxygenation have reacted to climatic changes since 43 ka. The OMZ and BW deoxygenation was strong during the Holocene, but the OMZ was well ventilated during the LGM period. We found an unstable mode of oscillating oxygenation states, from moderately oxygenated in cold stadials to deoxygenated in warm interstadials in MIS 3.
Maxime Daviray, Emmanuelle Geslin, Nils Risgaard-Petersen, Vincent V. Scholz, Marie Fouet, and Edouard Metzger
Biogeosciences, 21, 911–928, https://doi.org/10.5194/bg-21-911-2024, https://doi.org/10.5194/bg-21-911-2024, 2024
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Coastal marine sediments are subject to major acidification processes because of climate change and human activities, but these processes can also result from biotic activity. We studied the sediment acidifcation effect on benthic calcareous foraminifera in intertidal mudflats. The strong pH decrease in sediments probably caused by cable bacteria led to calcareous test dissolution of living and dead foraminifera, threatening the test preservation and their robustness as environmental proxies.
Sebastian J. E. Krause, Jiarui Liu, David J. Yousavich, DeMarcus Robinson, David W. Hoyt, Qianhui Qin, Frank Wenzhöfer, Felix Janssen, David L. Valentine, and Tina Treude
Biogeosciences, 20, 4377–4390, https://doi.org/10.5194/bg-20-4377-2023, https://doi.org/10.5194/bg-20-4377-2023, 2023
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Methane is a potent greenhouse gas, and hence it is important to understand its sources and sinks in the environment. Here we present new data from organic-rich surface sediments below an oxygen minimum zone off the coast of California (Santa Barbara Basin) demonstrating the simultaneous microbial production and consumption of methane, which appears to be an important process preventing the build-up of methane in these sediments and the emission into the water column and atmosphere.
Sinan Xu, Bo Liu, Sandra Arndt, Sabine Kasten, and Zijun Wu
Biogeosciences, 20, 2251–2263, https://doi.org/10.5194/bg-20-2251-2023, https://doi.org/10.5194/bg-20-2251-2023, 2023
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We use a reactive continuum model based on a lognormal distribution (l-RCM) to inversely determine model parameters μ and σ at 123 sites across the global ocean. Our results show organic matter (OM) reactivity is more than 3 orders of magnitude higher in shelf than in abyssal regions. In addition, OM reactivity is higher than predicted in some specific regions, yet the l-RCM can still capture OM reactivity features in these regions.
Christiane Schmidt, Emmanuelle Geslin, Joan M. Bernhard, Charlotte LeKieffre, Mette Marianne Svenning, Helene Roberge, Magali Schweizer, and Giuliana Panieri
Biogeosciences, 19, 3897–3909, https://doi.org/10.5194/bg-19-3897-2022, https://doi.org/10.5194/bg-19-3897-2022, 2022
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This study is the first to show non-selective deposit feeding in the foraminifera Nonionella labradorica and the possible uptake of methanotrophic bacteria. We carried out a feeding experiment with a marine methanotroph to examine the ultrastructure of the cell and degradation vacuoles using transmission electron microscopy (TEM). The results revealed three putative methanotrophs at the outside of the cell/test, which could be taken up via non-targeted grazing in seeps or our experiment.
James P. J. Ward, Katharine R. Hendry, Sandra Arndt, Johan C. Faust, Felipe S. Freitas, Sian F. Henley, Jeffrey W. Krause, Christian März, Allyson C. Tessin, and Ruth L. Airs
Biogeosciences, 19, 3445–3467, https://doi.org/10.5194/bg-19-3445-2022, https://doi.org/10.5194/bg-19-3445-2022, 2022
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The seafloor plays an important role in the cycling of silicon (Si), a key nutrient that promotes marine primary productivity. In our model study, we disentangle major controls on the seafloor Si cycle to better anticipate the impacts of continued warming and sea ice melt in the Barents Sea. We uncover a coupling of the iron redox and Si cycles, dissolution of lithogenic silicates, and authigenic clay formation, comprising a Si sink that could have implications for the Arctic Ocean Si budget.
Hanni Vigderovich, Werner Eckert, Michal Elul, Maxim Rubin-Blum, Marcus Elvert, and Orit Sivan
Biogeosciences, 19, 2313–2331, https://doi.org/10.5194/bg-19-2313-2022, https://doi.org/10.5194/bg-19-2313-2022, 2022
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Anaerobic oxidation of methane (AOM) is one of the major processes limiting the release of the greenhouse gas methane from natural environments. Here we show that significant AOM exists in the methane zone of lake sediments in natural conditions and even after long-term (ca. 18 months) anaerobic slurry incubations with two stages. Methanogens were most likely responsible for oxidizing the methane, and humic substances and iron oxides are likely electron acceptors to support this oxidation.
Bjorn Sundby, Pierre Anschutz, Pascal Lecroart, and Alfonso Mucci
Biogeosciences, 19, 1421–1434, https://doi.org/10.5194/bg-19-1421-2022, https://doi.org/10.5194/bg-19-1421-2022, 2022
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A glacial–interglacial methane-fuelled redistribution of reactive phosphorus between the oceanic and sedimentary phosphorus reservoirs can occur in the ocean when falling sea level lowers the pressure on the seafloor, destabilizes methane hydrates, and triggers the dissolution of P-bearing iron oxides. The mass of phosphate potentially mobilizable from the sediment is similar to the size of the current oceanic reservoir. Hence, this process may play a major role in the marine phosphorus cycle.
Florian Lauryssen, Philippe Crombé, Tom Maris, Elliot Van Maldegem, Marijn Van de Broek, Stijn Temmerman, and Erik Smolders
Biogeosciences, 19, 763–776, https://doi.org/10.5194/bg-19-763-2022, https://doi.org/10.5194/bg-19-763-2022, 2022
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Surface waters in lowland regions have a poor surface water quality, mainly due to excess nutrients like phosphate. Therefore, we wanted to know the phosphate levels without humans, also called the pre-industrial background. Phosphate binds strongly to sediment particles, suspended in the river water. In this research we used sediments deposited by a river as an archive for surface water phosphate back to 1800 CE. Pre-industrial phosphate levels were estimated at one-third of the modern levels.
Gerard J. M. Versteegh, Andrea Koschinsky, Thomas Kuhn, Inken Preuss, and Sabine Kasten
Biogeosciences, 18, 4965–4984, https://doi.org/10.5194/bg-18-4965-2021, https://doi.org/10.5194/bg-18-4965-2021, 2021
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Oxygen penetrates sediments not only from the ocean bottom waters but also from the basement. The impact of the latter is poorly understood. We show that this basement oxygen has a clear impact on the nitrogen cycle, the redox state, and the distribution of manganese, nickel cobalt and organic matter in the sediments. This is important for (1) global biogeochemical cycles, (2) understanding sedimentary life and (3) the interpretation of the sediment record to reconstruct the past.
Annika Fiskal, Eva Anthamatten, Longhui Deng, Xingguo Han, Lorenzo Lagostina, Anja Michel, Rong Zhu, Nathalie Dubois, Carsten J. Schubert, Stefano M. Bernasconi, and Mark A. Lever
Biogeosciences, 18, 4369–4388, https://doi.org/10.5194/bg-18-4369-2021, https://doi.org/10.5194/bg-18-4369-2021, 2021
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Microbially produced methane can serve as a carbon source for freshwater macrofauna most likely through grazing on methane-oxidizing bacteria. This study investigates the contributions of different carbon sources to macrofaunal biomass. Our data suggest that the average contribution of methane-derived carbon is similar between different fauna but overall remains low. This is further supported by the low abundance of methane-cycling microorganisms.
Astrid Hylén, Sebastiaan J. van de Velde, Mikhail Kononets, Mingyue Luo, Elin Almroth-Rosell, and Per O. J. Hall
Biogeosciences, 18, 2981–3004, https://doi.org/10.5194/bg-18-2981-2021, https://doi.org/10.5194/bg-18-2981-2021, 2021
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Sediments in oxygen-depleted ocean areas release high amounts of phosphorus, feeding algae that consume oxygen upon degradation, leading to further phosphorus release. Oxygenation is thought to trap phosphorus in the sediment and break this feedback. We studied the sediment phosphorus cycle in a previously anoxic area after an inflow of oxic water. Surprisingly, the sediment phosphorus release increased, showing that feedbacks between phosphorus release and oxygen depletion can be hard to break.
Sebastiaan J. van de Velde, Rebecca K. James, Ine Callebaut, Silvia Hidalgo-Martinez, and Filip J. R. Meysman
Biogeosciences, 18, 1451–1461, https://doi.org/10.5194/bg-18-1451-2021, https://doi.org/10.5194/bg-18-1451-2021, 2021
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Some 540 Myr ago, animal life evolved in the ocean. Previous research suggested that when these early animals started inhabiting the seafloor, they retained phosphorus in the seafloor, thereby limiting photosynthesis in the ocean. We studied salt marsh sediments with and without animals and found that their impact on phosphorus retention is limited, which implies that their impact on the global environment might have been less drastic than previously assumed.
Torben Windirsch, Guido Grosse, Mathias Ulrich, Lutz Schirrmeister, Alexander N. Fedorov, Pavel Y. Konstantinov, Matthias Fuchs, Loeka L. Jongejans, Juliane Wolter, Thomas Opel, and Jens Strauss
Biogeosciences, 17, 3797–3814, https://doi.org/10.5194/bg-17-3797-2020, https://doi.org/10.5194/bg-17-3797-2020, 2020
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To extend the knowledge on circumpolar deep permafrost carbon storage, we examined two deep permafrost deposit types (Yedoma and alas) in central Yakutia. We found little but partially undecomposed organic carbon as a result of largely changing sedimentation processes. The carbon stock of the examined Yedoma deposits is about 50 % lower than the general Yedoma domain mean, implying a very hetererogeneous Yedoma composition, while the alas is approximately 80 % below the thermokarst deposit mean.
Anna Plass, Christian Schlosser, Stefan Sommer, Andrew W. Dale, Eric P. Achterberg, and Florian Scholz
Biogeosciences, 17, 3685–3704, https://doi.org/10.5194/bg-17-3685-2020, https://doi.org/10.5194/bg-17-3685-2020, 2020
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We compare the cycling of Fe and Cd in sulfidic sediments of the Peruvian oxygen minimum zone. Due to the contrasting solubility of their sulfide minerals, the sedimentary Fe release and Cd burial fluxes covary with spatial and temporal distributions of H2S. Depending on the solubility of their sulfide minerals, sedimentary trace metal fluxes will respond differently to ocean deoxygenation/expansion of H2S concentrations, which may change trace metal stoichiometry of upwelling water masses.
Biqing Zhu, Manuel Kübler, Melanie Ridoli, Daniel Breitenstein, and Martin H. Schroth
Biogeosciences, 17, 3613–3630, https://doi.org/10.5194/bg-17-3613-2020, https://doi.org/10.5194/bg-17-3613-2020, 2020
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We provide evidence that the greenhouse gas methane (CH4) is enclosed in calcareous glacier-forefield sediments across Switzerland. Geochemical analyses confirmed that this ancient CH4 has its origin in the calcareous parent bedrock. Our estimate of the total quantity of CH4 enclosed in sediments across Switzerland indicates a large CH4 mass (~105 t CH4). We produced evidence that CH4 is stable in its enclosed state, but additional experiments are needed to elucidate its long-term fate.
Matteo Puglini, Victor Brovkin, Pierre Regnier, and Sandra Arndt
Biogeosciences, 17, 3247–3275, https://doi.org/10.5194/bg-17-3247-2020, https://doi.org/10.5194/bg-17-3247-2020, 2020
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A reaction-transport model to assess the potential non-turbulent methane flux from the East Siberian Arctic sediments to water columns is applied here. We show that anaerobic oxidation of methane (AOM) is an efficient filter except for high values of sedimentation rate and advective flow, which enable considerable non-turbulent steady-state methane fluxes. Significant transient methane fluxes can also occur during the building-up phase of the AOM-performing biomass microbial community.
Kyle Delwiche, Junyao Gu, Harold Hemond, and Sarah P. Preheim
Biogeosciences, 17, 3135–3147, https://doi.org/10.5194/bg-17-3135-2020, https://doi.org/10.5194/bg-17-3135-2020, 2020
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In this study, we investigate whether bubbles transport sediments containing arsenic and cyanobacteria from the bottom to the top of a polluted lake. We measured arsenic and cyanobacteria from bubble traps in the lake and from an experimental bubble column in the laboratory. We found that bubble transport was not an important source of arsenic in the surface waters but that bubbles could transport enough cyanobacteria to the surface to exacerbate harmful algal blooms.
Nathaniel Kemnitz, William M. Berelson, Douglas E. Hammond, Laura Morine, Maria Figueroa, Timothy W. Lyons, Simon Scharf, Nick Rollins, Elizabeth Petsios, Sydnie Lemieux, and Tina Treude
Biogeosciences, 17, 2381–2396, https://doi.org/10.5194/bg-17-2381-2020, https://doi.org/10.5194/bg-17-2381-2020, 2020
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Our paper shows how sedimentation in a very low oxygen setting provides a unique record of environmental change. We look at the past 250 years through the filter of sediment accumulation via radioisotope dating and other physical and chemical analyses of these sediments. We conclude, remarkably, that there has been very little change in net sediment mass accumulation through the past 100–150 years, yet just prior to 1900 CE, sediments were accumulating at 50 %–70 % of today's rate.
Dario Fussmann, Avril Jean Elisabeth von Hoyningen-Huene, Andreas Reimer, Dominik Schneider, Hana Babková, Robert Peticzka, Andreas Maier, Gernot Arp, Rolf Daniel, and Patrick Meister
Biogeosciences, 17, 2085–2106, https://doi.org/10.5194/bg-17-2085-2020, https://doi.org/10.5194/bg-17-2085-2020, 2020
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Dolomite (CaMg(CO3)2) is supersaturated in many aquatic settings (e.g., seawater) on modern Earth but does not precipitate directly from the fluid, a fact known as the dolomite problem. The widely acknowledged concept of dolomite precipitation involves microbial extracellular polymeric substances (EPSs) and anoxic conditions as important drivers. In contrast, results from Lake Neusiedl support an alternative concept of Ca–Mg carbonate precipitation under aerobic and alkaline conditions.
Aurèle Vuillemin, André Friese, Richard Wirth, Jan A. Schuessler, Anja M. Schleicher, Helga Kemnitz, Andreas Lücke, Kohen W. Bauer, Sulung Nomosatryo, Friedhelm von Blanckenburg, Rachel Simister, Luis G. Ordoñez, Daniel Ariztegui, Cynthia Henny, James M. Russell, Satria Bijaksana, Hendrik Vogel, Sean A. Crowe, Jens Kallmeyer, and the Towuti Drilling Project
Science team
Biogeosciences, 17, 1955–1973, https://doi.org/10.5194/bg-17-1955-2020, https://doi.org/10.5194/bg-17-1955-2020, 2020
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Ferruginous lakes experience restricted primary production due to phosphorus trapping by ferric iron oxides under oxic conditions. We report the presence of large crystals of vivianite, a ferrous iron phosphate, in sediments from Lake Towuti, Indonesia. We address processes of P retention linked to diagenesis of iron phases. Vivianite crystals had light Fe2+ isotope signatures and contained mineral inclusions consistent with antecedent processes of microbial sulfate and iron reduction.
Sonja Geilert, Patricia Grasse, Kristin Doering, Klaus Wallmann, Claudia Ehlert, Florian Scholz, Martin Frank, Mark Schmidt, and Christian Hensen
Biogeosciences, 17, 1745–1763, https://doi.org/10.5194/bg-17-1745-2020, https://doi.org/10.5194/bg-17-1745-2020, 2020
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Marine silicate weathering is a key process of the marine silica cycle; however, its controlling processes are not well understood. In the Guaymas Basin, silicate weathering has been studied under markedly differing ambient conditions. Environmental settings like redox conditions or terrigenous input of reactive silicates appear to be major factors controlling marine silicate weathering. These factors need to be taken into account in future oceanic mass balances of Si and in modeling studies.
Jessica B. Volz, Laura Haffert, Matthias Haeckel, Andrea Koschinsky, and Sabine Kasten
Biogeosciences, 17, 1113–1131, https://doi.org/10.5194/bg-17-1113-2020, https://doi.org/10.5194/bg-17-1113-2020, 2020
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Potential future deep-sea mining of polymetallic nodules at the seafloor is expected to severely harm the marine environment. However, the consequences on deep-sea ecosystems are still poorly understood. This study on surface sediments from man-made disturbance tracks in the Pacific Ocean shows that due to the removal of the uppermost sediment layer and thereby the loss of organic matter, the geochemical system in the sediments is disturbed for millennia before reaching a new equilibrium.
Ralf Conrad, Melanie Klose, and Alex Enrich-Prast
Biogeosciences, 17, 1063–1069, https://doi.org/10.5194/bg-17-1063-2020, https://doi.org/10.5194/bg-17-1063-2020, 2020
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Lake sediments release the greenhouse gas CH4. Acetate is an important precursor. Although Amazonian lake sediments all contained acetate-consuming methanogens, measurement of the turnover of labeled acetate showed that some sediments converted acetate not to CH4 plus CO2, as expected, but only to CO2. Our results indicate the operation of acetate-oxidizing microorganisms couples the oxidation process to syntrophic methanogenic partners and/or to the reduction of organic compounds.
Jens Rassmann, Eryn M. Eitel, Bruno Lansard, Cécile Cathalot, Christophe Brandily, Martial Taillefert, and Christophe Rabouille
Biogeosciences, 17, 13–33, https://doi.org/10.5194/bg-17-13-2020, https://doi.org/10.5194/bg-17-13-2020, 2020
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In this paper, we use a large set of measurements made using in situ and lab techniques to elucidate the cause of dissolved inorganic carbon fluxes in sediments from the Rhône delta and its companion compound alkalinity, which carries the absorption capacity of coastal waters with respect to atmospheric CO2. We show that sediment processes (sulfate reduction, FeS precipitation and accumulation) are crucial in generating the alkalinity fluxes observed in this study by in situ incubation chambers.
Sophie A. L. Paul, Matthias Haeckel, Michael Bau, Rajina Bajracharya, and Andrea Koschinsky
Biogeosciences, 16, 4829–4849, https://doi.org/10.5194/bg-16-4829-2019, https://doi.org/10.5194/bg-16-4829-2019, 2019
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We studied the upper 10 m of deep-sea sediments, including pore water, in the Peru Basin to understand small-scale variability of trace metals. Our results show high spatial variability related to topographical variations, which in turn impact organic matter contents, degradation processes, and trace metal cycling. Another interesting finding was the influence of dissolving buried nodules on the surrounding sediment and trace metal cycling.
Sarah Paradis, Antonio Pusceddu, Pere Masqué, Pere Puig, Davide Moccia, Tommaso Russo, and Claudio Lo Iacono
Biogeosciences, 16, 4307–4320, https://doi.org/10.5194/bg-16-4307-2019, https://doi.org/10.5194/bg-16-4307-2019, 2019
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Chronic deep bottom trawling in the Gulf of Castellammare (SW Mediterranean) erodes large volumes of sediment, exposing over-century-old sediment depleted in organic matter. Nevertheless, the arrival of fresh and nutritious sediment recovers superficial organic matter in trawling grounds and leads to high turnover rates, partially and temporarily mitigating the impacts of bottom trawling. However, this deposition is ephemeral and it will be swiftly eroded by the passage of the next trawler.
Zhichao Zhou, Bo Liang, Li-Ying Wang, Jin-Feng Liu, Bo-Zhong Mu, Hojae Shim, and Ji-Dong Gu
Biogeosciences, 16, 4229–4241, https://doi.org/10.5194/bg-16-4229-2019, https://doi.org/10.5194/bg-16-4229-2019, 2019
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This study shows a core bacterial microbiome with a small proportion of shared operational taxonomic units of common sequences among all oil reservoirs. Dominant methanogenesis shifts from the hydrogenotrophic pathway in water phase to the acetoclastic pathway in the oil phase at high temperatures, but the opposite is true at low temperatures. There are also major functional metabolism differences between the two phases for amino acids, hydrocarbons, and carbohydrates.
Annika Fiskal, Longhui Deng, Anja Michel, Philip Eickenbusch, Xingguo Han, Lorenzo Lagostina, Rong Zhu, Michael Sander, Martin H. Schroth, Stefano M. Bernasconi, Nathalie Dubois, and Mark A. Lever
Biogeosciences, 16, 3725–3746, https://doi.org/10.5194/bg-16-3725-2019, https://doi.org/10.5194/bg-16-3725-2019, 2019
Hanni Vigderovich, Lewen Liang, Barak Herut, Fengping Wang, Eyal Wurgaft, Maxim Rubin-Blum, and Orit Sivan
Biogeosciences, 16, 3165–3181, https://doi.org/10.5194/bg-16-3165-2019, https://doi.org/10.5194/bg-16-3165-2019, 2019
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Microbial iron reduction participates in important biogeochemical cycles. In the last decade iron reduction has been observed in many aquatic sediments below its classical zone, in the methane production zone, suggesting a link between the two cycles. Here we present evidence for microbial iron reduction in the methanogenic depth of the oligotrophic SE Mediterranean continental shelf using mainly geochemical and microbial sedimentary profiles and suggest possible mechanisms for this process.
Haoyi Yao, Wei-Li Hong, Giuliana Panieri, Simone Sauer, Marta E. Torres, Moritz F. Lehmann, Friederike Gründger, and Helge Niemann
Biogeosciences, 16, 2221–2232, https://doi.org/10.5194/bg-16-2221-2019, https://doi.org/10.5194/bg-16-2221-2019, 2019
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How methane is transported in the sediment is important for the microbial community living on methane. Here we report an observation of a mini-fracture that facilitates the advective gas transport of methane in the sediment, compared to the diffusive fluid transport without a fracture. We found contrasting bio-geochemical signals in these different transport modes. This finding can help to fill the gap in the fracture network system in modulating methane dynamics in surface sediments.
Laura A. Casella, Sixin He, Erika Griesshaber, Lourdes Fernández-Díaz, Martina Greiner, Elizabeth M. Harper, Daniel J. Jackson, Andreas Ziegler, Vasileios Mavromatis, Martin Dietzel, Anton Eisenhauer, Sabino Veintemillas-Verdaguer, Uwe Brand, and Wolfgang W. Schmahl
Biogeosciences, 15, 7451–7484, https://doi.org/10.5194/bg-15-7451-2018, https://doi.org/10.5194/bg-15-7451-2018, 2018
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Biogenic carbonates record past environmental conditions. Fossil shell chemistry and microstructure change as metastable biogenic carbonates are replaced by inorganic calcite. Simulated diagenetic alteration at 175 °C of different shell microstructures showed that (nacreous) shell aragonite and calcite were partially replaced by coarse inorganic calcite crystals due to dissolution–reprecipitation reactions. EBSD maps allowed for qualitative assessment of the degree of diagenetic overprint.
Wytze K. Lenstra, Matthias Egger, Niels A. G. M. van Helmond, Emma Kritzberg, Daniel J. Conley, and Caroline P. Slomp
Biogeosciences, 15, 6979–6996, https://doi.org/10.5194/bg-15-6979-2018, https://doi.org/10.5194/bg-15-6979-2018, 2018
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We show that burial rates of phosphorus (P) in an estuary in the northern Baltic Sea are very high. We demonstrate that at high sedimentation rates, P retention in the sediment is related to the formation of vivianite. With a reactive transport model, we assess the sensitivity of sedimentary vivianite formation. We suggest that enrichments of iron and P in the sediment are linked to periods of enhanced riverine input of Fe, which subsequently strongly enhances P burial in coastal sediments.
Jiarui Liu, Gareth Izon, Jiasheng Wang, Gilad Antler, Zhou Wang, Jie Zhao, and Matthias Egger
Biogeosciences, 15, 6329–6348, https://doi.org/10.5194/bg-15-6329-2018, https://doi.org/10.5194/bg-15-6329-2018, 2018
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Our work provides new insights into the biogeochemical cycling of iron, methane and phosphorus. We found that vivianite, an iron-phosphate mineral, is pervasive in methane-rich sediments, suggesting that iron reduction at depth is coupled to phosphorus and methane cycling on a much greater spatial scale than previously assumed. Acting as an important burial mechanism for iron and phosphorus, vivianite authigenesis may be an under-considered process in both modern and ancient settings alike.
Marc A. Besseling, Ellen C. Hopmans, R. Christine Boschman, Jaap S. Sinninghe Damsté, and Laura Villanueva
Biogeosciences, 15, 4047–4064, https://doi.org/10.5194/bg-15-4047-2018, https://doi.org/10.5194/bg-15-4047-2018, 2018
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Benthic archaea comprise a significant part of the total prokaryotic biomass in marine sediments. Here, we compared the archaeal diversity and intact polar lipid (IPL) composition in both surface and subsurface sediments with different oxygen regimes in the Arabian Sea oxygen minimum zone. The oxygenated sediments were dominated by Thaumarchaeota and IPL-GDGT-0. The anoxic sediment contained highly diverse archaeal communities and high relative abundances of IPL-GDGT-1 to -4.
Georgina Robinson, Thomas MacTavish, Candida Savage, Gary S. Caldwell, Clifford L. W. Jones, Trevor Probyn, Bradley D. Eyre, and Selina M. Stead
Biogeosciences, 15, 1863–1878, https://doi.org/10.5194/bg-15-1863-2018, https://doi.org/10.5194/bg-15-1863-2018, 2018
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This study examined the effect of adding carbon to a sediment-based effluent treatment system to treat nitrogen-rich aquaculture waste. The research was conducted in incubation chambers to measure the exchange of gases and nutrients across the sediment–water interface and examine changes in the sediment microbial community. Adding carbon increased the amount of nitrogen retained in the treatment system, thereby reducing the levels of nitrogen needing to be discharged to the environment.
Daniele Brigolin, Christophe Rabouille, Bruno Bombled, Silvia Colla, Salvatrice Vizzini, Roberto Pastres, and Fabio Pranovi
Biogeosciences, 15, 1347–1366, https://doi.org/10.5194/bg-15-1347-2018, https://doi.org/10.5194/bg-15-1347-2018, 2018
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We present the result of a study carried out in the north-western Adriatic Sea by combining two different types of models with field sampling. A mussel farm was taken as a local source of perturbation to the natural flux of particulate organic carbon to the sediment. Differences in fluxes were primarily associated with mussel physiological conditions. Although restricted, these changes in particulate organic carbon fluxes induced visible effects on sediment biogeochemistry.
Volker Brüchert, Lisa Bröder, Joanna E. Sawicka, Tommaso Tesi, Samantha P. Joye, Xiaole Sun, Igor P. Semiletov, and Vladimir A. Samarkin
Biogeosciences, 15, 471–490, https://doi.org/10.5194/bg-15-471-2018, https://doi.org/10.5194/bg-15-471-2018, 2018
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We determined the aerobic and anaerobic degradation rates of land- and marine-derived organic material in East Siberian shelf sediment. Marine plankton-derived organic carbon was the main source for the oxic dissolved carbon dioxide production, whereas terrestrial organic material significantly contributed to the production of carbon dioxide under anoxic conditions. Our direct degradation rate measurements provide new constraints for the present-day Arctic marine carbon budget.
Jack J. Middelburg
Biogeosciences, 15, 413–427, https://doi.org/10.5194/bg-15-413-2018, https://doi.org/10.5194/bg-15-413-2018, 2018
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Organic carbon processing at the seafloor is studied by geologists to better understand the sedimentary record, by biogeochemists to quantify burial and respiration, by organic geochemists to elucidate compositional changes, and by ecologists to follow carbon transfers within food webs. These disciplinary approaches have their strengths and weaknesses. This award talk provides a synthesis, highlights the role of animals in sediment carbon processing and presents some new concepts.
Craig Smeaton, William E. N. Austin, Althea L. Davies, Agnes Baltzer, John A. Howe, and John M. Baxter
Biogeosciences, 14, 5663–5674, https://doi.org/10.5194/bg-14-5663-2017, https://doi.org/10.5194/bg-14-5663-2017, 2017
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Fjord sediments are recognised as hotspots for the burial and long-term storage of carbon. In this study, we use the Scottish fjords as a natural laboratory. Using geophysical and geochemical analysis in combination with upscaling techniques, we have generated the first full national sedimentary C inventory for a fjordic system. The results indicate that the Scottish fjords on a like-for-like basis are more effective as C stores than their terrestrial counterparts, including Scottish peatlands.
Perran Louis Miall Cook, Adam John Kessler, and Bradley David Eyre
Biogeosciences, 14, 4061–4069, https://doi.org/10.5194/bg-14-4061-2017, https://doi.org/10.5194/bg-14-4061-2017, 2017
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Nitrogen is the key nutrient that typically limits productivity in coastal waters. One of the key controls on the amount of bioavailable nitrogen is the process of denitrification, which converts nitrate (bioavailable) into nitrogen gas. Previous studies suggest high rates of denitrification may take place within carbonate sediments, and one explanation for this is that this process may take place within the sand grains. Here we show evidence to support this hypothesis.
Chris T. Parsons, Fereidoun Rezanezhad, David W. O'Connell, and Philippe Van Cappellen
Biogeosciences, 14, 3585–3602, https://doi.org/10.5194/bg-14-3585-2017, https://doi.org/10.5194/bg-14-3585-2017, 2017
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Phosphorus (P) has accumulated in sediments due to past human activities. The re-release of this P to water contributes to the growth of harmful algal blooms. Our research improves our mechanistic understanding of how P is partitioned between different chemical forms and between sediment and water under dynamic conditions. We demonstrate that P trapped within iron minerals may be less mobile during anoxic conditions than previously thought due to reversible changes to P forms within sediment.
Clint M. Miller, Gerald R. Dickens, Martin Jakobsson, Carina Johansson, Andrey Koshurnikov, Matt O'Regan, Francesco Muschitiello, Christian Stranne, and Carl-Magnus Mörth
Biogeosciences, 14, 2929–2953, https://doi.org/10.5194/bg-14-2929-2017, https://doi.org/10.5194/bg-14-2929-2017, 2017
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Continental slopes north of the East Siberian Sea are assumed to hold large amounts of methane. We present pore water chemistry from the 2014 SWERUS-C3 expedition. These are among the first results generated from this vast climatically sensitive region, and they imply that abundant methane, including gas hydrates, do not characterize the East Siberian Sea slope or rise. This contradicts previous modeling and discussions, which due to the lack of data are almost entirely based assumption.
Cited articles
Aller, R.: Sedimentary diagenesis, depositional environments, and benthic
fluxes, Geochemistry, 2nd Edn., 8, 293–334, Elsevier, Oxford, 2014.
Aller, R. C., Aller, J. Y., Zhu, Q., Heilbrun, C., Klingensmith, I., and
Kaushik, A.: Worm tubes as conduits for the electrogenic microbial grid in
marine sediments, Sci. Adv., 5, eaaw3651, https://doi.org/10.1126/sciadv.aaw3651, 2019.
APHA: Standard methods for the examination of water and wastewater, American
Public Health Association (APHA), Washington, DC, USA, 2005.
Atkinson, M.: Elemental composition of commercial seasalts, Journal of
Aquariculture and Aquatic Sciences, 8, 39–43, 1997.
Bellier, N., Chazarenc, F., and Comeau, Y.: Phosphorus removal from
wastewater by mineral apatite, Water Res., 40, 2965–2971, 2006.
Berg, P., Risgaard-Petersen, N., and Rysgaard, S.: Interpretation of
measured concentration profiles in sediment pore water, Limnol. Oceanogr., 43, 1500–1510, 1998.
Berner, R. A.: Early diagenesis: a theoretical approach, Princeton
University Press, New Jersey, 1980.
Bjerg, J. T., Boschker, H. T., Larsen, S., Berry, D., Schmid, M., Millo, D.,
Tataru, P., Meysman, F. J., Wagner, M., and Nielsen, L. P.: Long-distance
electron transport in individual, living cable bacteria, P.
Natl. Acad. Sci. USA, 115, 5786–5791, 2018.
Bockris, J. O. M. and Reddy, A. K.: Ion-Ion Interactions, in: Modern Electrochemistry 1, Springer, Boston, MA, https://doi.org/10.1007/0-306-46909-X_3, 2002.
Boudreau, B. P.: Diagenetic models and their implementation, Springer
Berlin, 1997.
Boyd, P. and Ellwood, M.: The biogeochemical cycle of iron in the ocean,
Nat. Geosci., 3, 675–682, 2010.
Breitburg, D., Levin, L. A., Oschlies, A., Grégoire, M., Chavez, F. P.,
Conley, D. J., Garçon, V., Gilbert, D., Gutiérrez, D., and Isensee,
K.: Declining oxygen in the global ocean and coastal waters, Science, 359,
eaam7240, https://doi.org/10.1126/science.aam7240, 2018.
Burdige, D. J.: The biogeochemistry of manganese and iron reduction in
marine sediments, Earth Sci. Rev., 35, 249–284, 1993.
Burdige, D. J.: Geochemistry of marine sediments, Princeton University
Press, New Jersey, 2006.
Burdorf, L. D. W., Tramper, A., Seitaj, D., Meire, L., Hidalgo-Martinez, S., Zetsche, E.-M., Boschker, H. T. S., and Meysman, F. J. R.: Long-distance electron transport occurs globally in marine sediments, Biogeosciences, 14, 683–701, https://doi.org/10.5194/bg-14-683-2017, 2017.
Burdorf, L. D., Malkin, S. Y., Bjerg, J. T., van Rijswijk, P., Criens, F.,
Tramper, A., and Meysman, F. J.: The effect of oxygen availability on
long-distance electron transport in marine sediments, Limnol.
Oceanog., 63, 1799–1816, 2018.
Buresh, R. J. and Moraghan, J.: Chemical Reduction of Nitrate by Ferrous
Iron 1, J. Environ. Qual., 5, 320–325, 1976.
Burton, E. D., Bush, R. T., and Sullivan, L. A.: Fractionation and
extractability of sulfur, iron and trace elements in sulfidic sediments,
Chemosphere, 64, 1421–1428, 2006.
Burton, E. D., Sullivan, L. A., Bush, R. T., Johnston, S. G., and Keene, A.
F.: A simple and inexpensive chromium-reducible sulfur method for
acid-sulfate soils, Appl. Geochem., 23, 2759–2766, 2008.
Capet, A., Beckers, J.-M., and Grégoire, M.: Drivers, mechanisms and long-term variability of seasonal hypoxia on the Black Sea northwestern shelf – is there any recovery after eutrophication?, Biogeosciences, 10, 3943–3962, https://doi.org/10.5194/bg-10-3943-2013, 2013.
Claff, S. R., Sullivan, L. A., Burton, E. D., and Bush, R. T.: A sequential
extraction procedure for acid sulfate soils: partitioning of iron, Geoderma,
155, 224–230, 2010.
Cornelissen, R., Bøggild, A., Thiruvallur Eachambadi, R., Koning, R. I.,
Kremer, A., Hidalgo-Martinez, S., Zetsche, E.-M., Damgaard, L. R.,
Bonné, R., and Drijkoningen, J.: The cell envelope structure of cable
bacteria, Front. Microbiol., 9, 3044, https://doi.org/10.3389/fmicb.2018.03044, 2018.
Coull, B. C. and Chandler, G. T.: Meiobenthos, in Encyclopedia of Ocean Sciences, edited by: Steele, J. H., Academic Press, San Diego,
726–731, 2001.
Damgaard, L. R., Risgaard-Petersen, N., and Nielsen, L. P.: Electric
potential microelectrode for studies of electrobiogeophysics, J.
Geophys. Res.-Biogeosci., 119, 1906–1917, 2014.
Davis, C. C., Chen, H.-W., and Edwards, M.: Modeling silica sorption to iron
hydroxide, Environ. Sci. Technol., 36, 582–587, 2002.
Diaz, R. J. and Rosenberg, R.: Spreading dead zones and consequences for
marine ecosystems, Science, 321, 926–929, 2008.
Egger, M., Jilbert, T., Behrends, T., Rivard, C., and Slomp, C. P.:
Vivianite is a major sink for phosphorus in methanogenic coastal surface
sediments, Geochim. Cosmochim. Ac., 169, 217–235, 2015.
Fofonoff, N. P. and Millard Jr., R. C.: Algorithms for the computation of fundamental properties of seawater, Paris, France, UNESCO, 53 pp., UNESCO Technical Papers in Marine Sciences, 44, available at: http://hdl.handle.net/11329/109 (last access: 25 November 2020), 1983.
Fossing, H. and Jørgensen, B. B.: Measurement of bacterial sulfate
reduction in sediments: evaluation of a single-step chromium reduction
method, Biogeochemistry, 8, 205–222, 1989.
Geerlings, N. M. J., Zetsche, E.-M., Hidalgo-Martinez, S., Middelburg, J. J., and Meysman, F. J. R.: Mineral formation induced by cable bacteria performing long-distance electron transport in marine sediments, Biogeosciences, 16, 811–829, https://doi.org/10.5194/bg-16-811-2019, 2019.
Glud, R. N.: Oxygen dynamics of marine sediments, Mar. Biol. Res.,
4, 243–289, 2008.
Hermans, M., Lenstra, W., Hidalgo-Martinez, S., van Helmond, N. A.,
Witbaard, R., Meysman, F., Gonzalez, S., and Slomp, C. P.: Abundance and
Biogeochemical Impact of Cable Bacteria in Baltic Sea Sediments,
Environ. Sci. Technol., 53, 7494–7503, 2019a.
Hermans, M., Lenstra, W. K., van Helmond, N. A., Behrends, T., Egger, M.,
Séguret, M. J., Gustafsson, E., Gustafsson, B. G., and Slomp, C. P.:
Impact of natural re-oxygenation on the sediment dynamics of manganese, iron
and phosphorus in a euxinic Baltic Sea basin, Geochim. Cosmochim.
Ac., 246, 174–196, 2019b.
Hermans, M., Astudillo Pascual, M., Behrends, T., Lenstra, W. K., Conley, D.
J., and Slomp, C. P.: Coupled dynamics of iron, manganese and phosphorus in
brackish coastal sediments populated by cable bacteria, Limnol.
Oceanogr., submitted, 2020.
Hovanec, T. A. and Coshland, J. L.: A chemical analysis of select trace
elements in synthetic sea salts and natural seawater, Sea Scope, Aquarium
Systems, 21, 1–4, 2004.
Jeroschewski, P., Steuckart, C., and Kühl, M.: An amperometric
microsensor for the determination of H2S in aquatic environments, Anal.
Chem., 68, 4351–4357, 1996.
Jilbert, T., de Lange, G., and Reichart, G. J.: Fluid displacive resin
embedding of laminated sediments: preserving trace metals for
high-resolution paleoclimate investigations, Limnol. Oceanogr.-Meth., 6, 16–22, 2008.
Jilbert, T. and Slomp, C. P.: Iron and manganese shuttles control the
formation of authigenic phosphorus minerals in the euxinic basins of the
Baltic Sea, Geochim. Cosmochim. Ac., 107, 155–169, 2013.
Kallmeyer, J., Ferdelman, T. G., Weber, A., Fossing, H., and Jørgensen,
B. B.: A cold chromium distillation procedure for radiolabeled sulfide
applied to sulfate reduction measurements, Limnol. Oceanogr.-Meth., 2, 171–180, 2004.
Kemp, W. M., Testa, J. M., Conley, D. J., Gilbert, D., and Hagy, J. D.: Temporal responses of coastal hypoxia to nutrient loading and physical controls, Biogeosciences, 6, 2985–3008, https://doi.org/10.5194/bg-6-2985-2009, 2009.
Kjeldsen, K. U., Schreiber, L., Thorup, C. A., Boesen, T., Bjerg, J. T.,
Yang, T., Dueholm, M. S., Larsen, S., Risgaard-Petersen, N., and Nierychlo,
M.: On the evolution and physiology of cable bacteria, P.
Natl. Acad. Sci., 116, 19116–19125, 2019.
Koroleff, F.: Determination of ammonia as indophenol blue, International
Council for the Exploration of the Sea (ICES), 9, 1969.
Kraal, P., Slomp, C. P., Forster, A., Kuypers, M. M., and Sluijs, A.: Pyrite
oxidation during sample storage determines phosphorus fractionation in
carbonate-poor anoxic sediments, Geochim. Cosmochim. Ac., 73,
3277–3290, 2009.
Kraal, P., Burton, E. D., and Bush, R. T.: Iron monosulfide accumulation and
pyrite formation in eutrophic estuarine sediments, Geochim. Cosmochim. Ac., 122, 75–88, 2013.
Kraal, P. and Slomp, C. P.: Rapid and extensive alteration of phosphorus
speciation during oxic storage of wet sediment samples, Plos One, 9, e96859, https://doi.org/10.1371/journal.pone.0096859,
2014.
Kraal, P., Dijkstra, N., Behrends, T., and Slomp, C. P.: Phosphorus burial
in sediments of the sulfidic deep Black Sea: Key roles for adsorption by
calcium carbonate and apatite authigenesis, Geochim. Cosmochim. Ac.,
204, 140–158, 2017.
Kristensen, E., Kristiansen, K. D., and Jensen, M. H.: Temporal behavior of
manganese and iron in a sandy coastal sediment exposed to water column
anoxia, Estuaries, 26, 690–699, 2003.
Kristensen, E., Penha-Lopes, G., Delefosse, M., Valdemarsen, T., Quintana,
C. O., and Banta, G. T.: What is bioturbation? The need for a precise
definition for fauna in aquatic sciences, Mar. Ecol. Prog. Ser.,
446, 285–302, 2012.
Kristiansen, K., Kristensen, E., and Jensen, E.: The influence of water
column hypoxia on the behaviour of manganese and iron in sandy coastal
marine sediment, Estuarine, Coast. Shelf Sci., 55, 645–654, 2002.
Kuz'minskii, Y. V., Andriiko, A., and Nyrkova, L.: Chemical and phase
composition of manganese oxides obtained by Mn (II) oxidation in nitrate
solutions, J. Power Dources, 52, 49–53, 1994.
Larsen, S., Nielsen, L. P., and Schramm, A.: Cable bacteria associated with
long-distance electron transport in New England salt marsh sediment,
Environ. Microbiol. Rep., 7, 175–179, 2015.
Learman, D., Voelker, B., Vazquez-Rodriguez, A., and Hansel, C.: Formation
of manganese oxides by bacterially generated superoxide, Nat. Geosci.,
4, 95–98, https://doi.org/10.1038/NGEO1055, 2011.
Lenstra, W., Hermans, M., Séguret, M., Witbaard, R., Behrends, T.,
Dijkstra, N., Van Helmond, N., Kraal, P., Laan, P., and Rijkenberg, M.: The
shelf-to-basin iron shuttle in the Black Sea revisited, Chem. Geol.,
511, 314–341, 2019.
Lenstra, W., Séguret, M., Behrends, T., Groeneveld, R., Hermans, M.,
Witbaard, R., and Slomp, C.: Controls on the shuttling of manganese over the
northwestern Black Sea shelf and its fate in the euxinic deep basin,
Geochim. Cosmochim. Ac., 273, 177–204, 2020.
Luther, G. W.: The role of one-and two-electron transfer reactions in
forming thermodynamically unstable intermediates as barriers in
multi-electron redox reactions, Aquatic Geochemistry, 16, 395–420, 2010.
Madison, A. S., Tebo, B. M., Mucci, A., Sundby, B., and Luther, G. W.:
Abundant porewater Mn (III) is a major component of the sedimentary redox
system, Science, 341, 875–878, 2013.
Malkin, S. Y., Rao, A. M., Seitaj, D., Vasquez-Cardenas, D., Zetsche, E.-M.,
Hidalgo-Martinez, S., Boschker, H. T., and Meysman, F. J.: Natural
occurrence of microbial sulphur oxidation by long-range electron transport
in the seafloor, ISME J., 8, 1843–1854, 2014.
Malkin, S. Y., Seitaj, D., Burdorf, L. D., Nieuwhof, S., Hidalgo-Martinez,
S., Tramper, A., Geeraert, N., De Stigter, H., and Meysman, F. J.:
Electrogenic sulfur oxidation by cable bacteria in bivalve reef sediments,
Front. Mar. Sci., 4, 1–19, https://doi.org/10.3389/fmars.2017.00028, 2017.
Marzocchi, U., Trojan, D., Larsen, S., Meyer, R. L., Revsbech, N. P.,
Schramm, A., Nielsen, L. P., and Risgaard-Petersen, N.: Electric coupling
between distant nitrate reduction and sulfide oxidation in marine sediment,
ISME J., 8, 1682–1690, 2014.
Meysman, F. J., Risgaard-Petersen, N., Malkin, S. Y., and Nielsen, L. P.:
The geochemical fingerprint of microbial long-distance electron transport in
the seafloor, Geochim. Cosmochim. Ac., 152, 122–142, 2015.
Meysman, F. J.: Cable bacteria take a new breath using long-distance
electricity, Trends Microbiol., 26, 411–422, 2018.
Meysman, F. J., Cornelissen, R., Trashin, S., Bonné, R., Martinez, S.
H., van der Veen, J., Blom, C. J., Karman, C., Hou, J.-L., and Eachambadi,
R. T.: A highly conductive fibre network enables centimetre-scale electron
transport in multicellular cable bacteria, Nat. Commun., 10, 1–8,
2019.
Millero, F. J., Plese, T., and Fernandez, M.: The dissociation of hydrogen
sulfide in seawater 1, Limnol. Oceanogr., 33, 269–274, 1988.
Morgan, B., Burton, E. D., and Rate, A. W.: Iron monosulfide enrichment and
the presence of organosulfur in eutrophic estuarine sediments, Chem.
Geol., 296, 119–130, 2012.
Müller, H., Bosch, J., Griebler, C., Damgaard, L. R., Nielsen, L. P.,
Lueders, T., and Meckenstock, R. U.: Long-distance electron transfer by
cable bacteria in aquifer sediments, ISME J., 10, 2010–2019, 2016.
Murphy, J. and Riley, J.: A single-solution method for the determination of
soluble phosphate in sea water, J. Mar. Biol. Assoc. UK, 37, 9–14, 1958.
Naudet, V. and Revil, A.: A sandbox experiment to investigate
bacteria-mediated redox processes on self-potential signals, Geophys.
Res. Lett., 32, 1–4, https://doi.org/10.1029/2005GL022735, 2005.
Nielsen, L. P., Risgaard-Petersen, N., Fossing, H., Christensen, P. B., and
Sayama, M.: Electric currents couple spatially separated biogeochemical
processes in marine sediment, Nature, 463, 1071–1074, 2010.
Nielsen, L. P., and Risgaard-Petersen, N.: Rethinking sediment
biogeochemistry after the discovery of electric currents, Ann. Rev. Mar. Sci., 7, 425–442, 2015.
Norkko, J., Reed, D. C., Timmermann, K., Norkko, A., Gustafsson, B. G.,
Bonsdorff, E., Slomp, C. P., Carstensen, J., and Conley, D. J.: A welcome
can of worms? Hypoxia mitigation by an invasive species, Glob. Change
Biol., 18, 422–434, 2012.
Nriagu, J. O.: Stability of vivianite and ion-pair formation in the system
Fe3(PO4)2-H3PO4H3PO4-H2O, Geochim. Cosmochim. Ac., 36, 459–470,
1972.
Pernthaler, J., Glöckner, F.-O., Schönhuber, W., and Amann, R.:
Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide
probes, Meth. Microbiol., 30, 207–226, 2001.
Pfeffer, C., Larsen, S., Song, J., Dong, M., Besenbacher, F., Meyer, R. L.,
Kjeldsen, K. U., Schreiber, L., Gorby, Y. A., and El-Naggar, M. Y.:
Filamentous bacteria transport electrons over centimetre distances, Nature,
491, 218–221, 2012.
Poulton, S. W. and Canfield, D. E.: Development of a sequential extraction
procedure for iron: implications for iron partitioning in continentally
derived particulates, Chem. Geol., 214, 209–221, 2005.
Rabalais, N. N., Turner, R. E., and Wiseman Jr., W. J.: Gulf of Mexico
hypoxia, aka “The dead zone”, Annual Review of ecology and Systematics,
33, 235–263, 2002.
Rabalais, N. N., Cai, W.-J., Carstensen, J., Conley, D. J., Fry, B., Hu, X.,
Quinones-Rivera, Z., Rosenberg, R., Slomp, C. P., and Turner, R. E.:
Eutrophication-driven deoxygenation in the coastal ocean, Oceanography, 27,
172–183, 2014.
Rabouille, C., Denis, L., Dedieu, K., Stora, G., Lansard, B., and Grenz, C.:
Oxygen demand in coastal marine sediments: comparing in situ microelectrodes
and laboratory core incubations, J. Exp. Mar. Biol. Ecol., 285, 49–69, 2003.
Raiswell, R. and Canfield, D. E.: The iron biogeochemical cycle past and
present, Geochemi. Perspect., 1, 1–2, 2012.
Rao, A. M., Malkin, S. Y., Hidalgo-Martinez, S., and Meysman, F. J.: The
impact of electrogenic sulfide oxidation on elemental cycling and solute
fluxes in coastal sediment, Geochim. Cosmochim. Ac., 172, 265–286,
2016.
Rasmussen, H. and Jørgensen, B. B.: Microelectrode studies of seasonal
oxygen uptake in a coastal sediment: role of molecular diffusion, Mar.
Ecol. Prog. Ser., 81, 289–303, 1992.
Reed, D. C., Slomp, C. P., and Gustafsson, B. G.: Sedimentary phosphorus
dynamics and the evolution of bottom-water hypoxia: A coupled
benthic–pelagic model of a coastal system, Limnol. Oceanogr., 56,
1075–1092, 2011.
Revil, A., Mendonça, C., Atekwana, E., Kulessa, B., Hubbard, S., and
Bohlen, K.: Understanding biogeobatteries: Where geophysics meets
microbiology, J. Geophys. Res.-Biogeosci., 115, 1–22, https://doi.org/10.1029/2009JG001065, 2010.
Revil, A., Karaoulis, M., Johnson, T., and Kemna, A.: Some low-frequency
electrical methods for subsurface characterization and monitoring in
hydrogeology, Hydrogeol. J., 20, 617–658, 2012.
Riedel, B., Zuschin, M., and Stachowitsch, M.: Tolerance of benthic
macrofauna to hypoxia and anoxia in shallow coastal seas: a realistic
scenario, Mar. Ecol. Prog. Ser., 458, 39–52, 2012.
Risgaard-Petersen, N., Revil, A., Meister, P., and Nielsen, L. P.: Sulfur,
iron-, and calcium cycling associated with natural electric currents running
through marine sediment, Geochim. Cosmochim. Ac., 92, 1–13, 2012.
Risgaard-Petersen, N., Damgaard, L. R., Revil, A., and Nielsen, L. P.:
Mapping electron sources and sinks in a marine biogeobattery, J. Geophys. Res.-Biogeo., 119, 1475–1486, 2014.
Risgaard-Petersen, N., Kristiansen, M., Frederiksen, R. B., Dittmer, A. L.,
Bjerg, J. T., Trojan, D., Schreiber, L., Damgaard, L. R., Schramm, A., and
Nielsen, L. P.: Cable bacteria in freshwater sediments, Appl.
Environ. Microbiol., 81, 6003–6011, 2015.
Ruttenberg, K. C.: Development of a sequential extraction method for
different forms of phosphorus in marine sediments, Limnol.
Oceanogr., 37, 1460–1482, 1992.
Ruttenberg, K. C. and Berner, R. A.: Authigenic apatite formation and
burial in sediments from non-upwelling, continental margin environments,
Geochim. Cosmochim. Ac., 57, 991–1007, 1993.
Sandfeld, T., Marzocchi, U., Petro, C., Schramm, A., and Risgaard-Petersen,
N.: Electrogenic sulfide oxidation mediated by cable bacteria stimulates
sulfate reduction in freshwater sediments, ISME J., 14, 1233–1246,
2020.
Schauer, R., Risgaard-Petersen, N., Kjeldsen, K. U., Bjerg, J. J. T.,
Jørgensen, B. B., Schramm, A., and Nielsen, L. P.: Succession of cable
bacteria and electric currents in marine sediment, ISME J., 8,
1314–1322, https://doi.org/10.1038/ismej.2013.239, 2014.
Schmidtko, S., Stramma, L., and Visbeck, M.: Decline in global oceanic
oxygen content during the past five decades, Nature, 542, 335–339, https://doi.org/10.1038/nature21399, 2017.
Seitaj, D., Schauer, R., Sulu-Gambari, F., Hidalgo-Martinez, S., Malkin, S.
Y., Burdorf, L. D., Slomp, C. P., and Meysman, F. J.: Cable bacteria
generate a firewall against euxinia in seasonally hypoxic basins,
P. Natl. Acad. Sci. USA, 112, 13278–13283, 2015.
Sigg, L. and Stumm, W.: The interaction of anions and weak acids with the
hydrous goethite (α-FeOOH) surface, Colloid. Surface., 2,
101–117, 1981.
Slomp, C. P., Epping, E. H., Helder, W., and Raaphorst, W. V.: A key role
for iron-bound phosphorus in authigenic apatite formation in North Atlantic
continental platform sediments, J. Mar. Res., 54, 1179–1205,
1996.
Straub, K. L., Benz, M., Schink, B., and Widdel, F.: Anaerobic,
nitrate-dependent microbial oxidation of ferrous iron, Appl. Environ.
Microbiol., 62, 1458–1460, 1996.
Sulu-Gambari, F., Seitaj, D., Behrends, T., Banerjee, D., Meysman, F. J.,
and Slomp, C. P.: Impact of cable bacteria on sedimentary iron and manganese
dynamics in a seasonally-hypoxic marine basin, Geochim. Cosmochim.
Ac., 192, 49–69, 2016a.
Sulu-Gambari, F., Seitaj, D., Meysman, F. J., Schauer, R., Polerecky, L.,
and Slomp, C. P.: Cable bacteria control iron–phosphorus dynamics in
sediments of a coastal hypoxic basin, Environ. Sci. Technol.,
50, 1227–1233, 2016b.
Sulu-Gambari, F., Hagens, M., Behrends, T., Seitaj, D., Meysman, F. J.,
Middelburg, J., and Slomp, C. P.: Phosphorus cycling and burial in sediments
of a seasonally hypoxic Marine Basin, Estuar. Coast., 41, 921–939,
2018.
Trojan, D., Schreiber, L., Bjerg, J. T., Bøggild, A., Yang, T., Kjeldsen,
K. U., and Schramm, A.: A taxonomic framework for cable bacteria and
proposal of the candidate genera Electrothrix and Electronema, Syst.
Appl. Microbiol., 39, 297–306, 2016.
Van Cappellen, P., and Berner, R. A.: A mathematical model for the early
diagenesis of phosphorus and fluorine in marine sediments; apatite
precipitation, Am. J. Sci., 288, 289–333, 1988.
van de Velde, S., Lesven, L., Burdorf, L. D., Hidalgo-Martinez, S.,
Geelhoed, J. S., Van Rijswijk, P., Gao, Y., and Meysman, F. J.: The impact
of electrogenic sulfur oxidation on the biogeochemistry of coastal
sediments: A field study, Geochim. Cosmochim. Ac., 194, 211–232,
2016.
Vasquez-Cardenas, D., Van De Vossenberg, J., Polerecky, L., Malkin, S. Y.,
Schauer, R., Hidalgo-Martinez, S., Confurius, V., Middelburg, J. J.,
Meysman, F. J., and Boschker, H. T.: Microbial carbon metabolism associated
with electrogenic sulphur oxidation in coastal sediments, ISME J.,
9, 1966–1978, https://doi.org/10.1038/ismej.2015.10, 2015.
Wang, Y. and Van Cappellen, P.: A multicomponent reactive transport model
of early diagenesis: Application to redox cycling in coastal marine
sediments, Geochim. Cosmochim. Ac., 60, 2993–3014, 1996.
Wijsman, J. W., Middelburg, J. J., Herman, P. M., Böttcher, M. E., and
Heip, C. H.: Sulfur and iron speciation in surface sediments along the
northwestern margin of the Black Sea, Mar. Chem., 74, 261–278, 2001.
Short summary
This paper demonstrates that the recently discovered cable bacteria are capable of using a mineral, known as siderite, as a source for the formation of iron oxides. This work also demonstrates that the activity of cable bacteria can lead to a distinct subsurface layer in the sediment that can be used as a marker for their activity.
This paper demonstrates that the recently discovered cable bacteria are capable of using a...
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