Articles | Volume 12, issue 6
https://doi.org/10.5194/bg-12-1683-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-12-1683-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
17 Mar 2015
Research article |
| 17 Mar 2015
Tidal controls on trace gas dynamics in a seagrass meadow of the Ria Formosa lagoon (southern Portugal)
E. Bahlmann
CORRESPONDING AUTHOR
University of Hamburg, Institute for Biogeochemistry and Marine Chemistry, Bundesstraße 55, 20146 Hamburg, Germany
I. Weinberg
University of Hamburg, Institute for Biogeochemistry and Marine Chemistry, Bundesstraße 55, 20146 Hamburg, Germany
J. V. Lavrič
Max Planck Institute for Biogeochemistry, Hans-Knoell Str 10, 07745 Jena, Germany
T. Eckhardt
University of Hamburg, Institute for Biogeochemistry and Marine Chemistry, Bundesstraße 55, 20146 Hamburg, Germany
W. Michaelis
University of Hamburg, Institute for Biogeochemistry and Marine Chemistry, Bundesstraße 55, 20146 Hamburg, Germany
R. Santos
Centro de ciências do mar, Universidade do Algarve, Gambelas, 8005-139 Faro, Portugal
R. Seifert
University of Hamburg, Institute for Biogeochemistry and Marine Chemistry, Bundesstraße 55, 20146 Hamburg, Germany
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Robbie Ramsay, Chiara F. Di Marco, Matthias Sörgel, Mathew R. Heal, Samara Carbone, Paulo Artaxo, Alessandro C. de Araùjo, Marta Sá, Christopher Pöhlker, Jost Lavric, Meinrat O. Andreae, and Eiko Nemitz
Atmos. Chem. Phys., 20, 15551–15584, https://doi.org/10.5194/acp-20-15551-2020, https://doi.org/10.5194/acp-20-15551-2020, 2020
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The Amazon rainforest is a unique
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Rachel L. Tunnicliffe, Anita L. Ganesan, Robert J. Parker, Hartmut Boesch, Nicola Gedney, Benjamin Poulter, Zhen Zhang, Jošt V. Lavrič, David Walter, Matthew Rigby, Stephan Henne, Dickon Young, and Simon O'Doherty
Atmos. Chem. Phys., 20, 13041–13067, https://doi.org/10.5194/acp-20-13041-2020, https://doi.org/10.5194/acp-20-13041-2020, 2020
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Santiago Botía, Christoph Gerbig, Julia Marshall, Jost V. Lavric, David Walter, Christopher Pöhlker, Bruna Holanda, Gilberto Fisch, Alessandro Carioca de Araújo, Marta O. Sá, Paulo R. Teixeira, Angélica F. Resende, Cleo Q. Dias-Junior, Hella van Asperen, Pablo S. Oliveira, Michel Stefanello, and Otávio C. Acevedo
Atmos. Chem. Phys., 20, 6583–6606, https://doi.org/10.5194/acp-20-6583-2020, https://doi.org/10.5194/acp-20-6583-2020, 2020
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Bruna A. Holanda, Mira L. Pöhlker, David Walter, Jorge Saturno, Matthias Sörgel, Jeannine Ditas, Florian Ditas, Christiane Schulz, Marco Aurélio Franco, Qiaoqiao Wang, Tobias Donth, Paulo Artaxo, Henrique M. J. Barbosa, Stephan Borrmann, Ramon Braga, Joel Brito, Yafang Cheng, Maximilian Dollner, Johannes W. Kaiser, Thomas Klimach, Christoph Knote, Ovid O. Krüger, Daniel Fütterer, Jošt V. Lavrič, Nan Ma, Luiz A. T. Machado, Jing Ming, Fernando G. Morais, Hauke Paulsen, Daniel Sauer, Hans Schlager, Johannes Schneider, Hang Su, Bernadett Weinzierl, Adrian Walser, Manfred Wendisch, Helmut Ziereis, Martin Zöger, Ulrich Pöschl, Meinrat O. Andreae, and Christopher Pöhlker
Atmos. Chem. Phys., 20, 4757–4785, https://doi.org/10.5194/acp-20-4757-2020, https://doi.org/10.5194/acp-20-4757-2020, 2020
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Atmos. Meas. Tech., 13, 1671–1692, https://doi.org/10.5194/amt-13-1671-2020, https://doi.org/10.5194/amt-13-1671-2020, 2020
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Friedemann Reum, Mathias Göckede, Jost V. Lavric, Olaf Kolle, Sergey Zimov, Nikita Zimov, Martijn Pallandt, and Martin Heimann
Atmos. Meas. Tech., 12, 5717–5740, https://doi.org/10.5194/amt-12-5717-2019, https://doi.org/10.5194/amt-12-5717-2019, 2019
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Eric J. Morgan, Jost V. Lavric, Damian L. Arévalo-Martínez, Hermann W. Bange, Tobias Steinhoff, Thomas Seifert, and Martin Heimann
Biogeosciences, 16, 4065–4084, https://doi.org/10.5194/bg-16-4065-2019, https://doi.org/10.5194/bg-16-4065-2019, 2019
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Christopher Pöhlker, David Walter, Hauke Paulsen, Tobias Könemann, Emilio Rodríguez-Caballero, Daniel Moran-Zuloaga, Joel Brito, Samara Carbone, Céline Degrendele, Viviane R. Després, Florian Ditas, Bruna A. Holanda, Johannes W. Kaiser, Gerhard Lammel, Jošt V. Lavrič, Jing Ming, Daniel Pickersgill, Mira L. Pöhlker, Maria Praß, Nina Löbs, Jorge Saturno, Matthias Sörgel, Qiaoqiao Wang, Bettina Weber, Stefan Wolff, Paulo Artaxo, Ulrich Pöschl, and Meinrat O. Andreae
Atmos. Chem. Phys., 19, 8425–8470, https://doi.org/10.5194/acp-19-8425-2019, https://doi.org/10.5194/acp-19-8425-2019, 2019
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The Amazon Tall Tower Observatory (ATTO) has been established to monitor the rain forest's biosphere–atmosphere exchange, which experiences the combined pressures from human-made deforestation and progressing climate change. This work is meant to be a reference study, which characterizes various geospatial properties of the ATTO footprint region and shows how the human-made transformation of Amazonia may impact future atmospheric observations at ATTO.
Friedemann Reum, Christoph Gerbig, Jost V. Lavric, Chris W. Rella, and Mathias Göckede
Atmos. Meas. Tech., 12, 1013–1027, https://doi.org/10.5194/amt-12-1013-2019, https://doi.org/10.5194/amt-12-1013-2019, 2019
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Atmospheric CO2 and CH4 mole fractions are often measured using greenhouse gas analyzers manufactured by Picarro, Inc. We report biases in these measurements that are related to pressure changes in the optical cavity of the analyzers and occur mainly at low water vapor mole fractions. We provide a method to correct the biases, which contributes to keeping the overall accuracy of CO2 and CH4 measurements with Picarro analyzers within the WMO interlaboratory compatibility goals.
Ekaterina Ezhova, Ilona Ylivinkka, Joel Kuusk, Kaupo Komsaare, Marko Vana, Alisa Krasnova, Steffen Noe, Mikhail Arshinov, Boris Belan, Sung-Bin Park, Jošt Valentin Lavrič, Martin Heimann, Tuukka Petäjä, Timo Vesala, Ivan Mammarella, Pasi Kolari, Jaana Bäck, Üllar Rannik, Veli-Matti Kerminen, and Markku Kulmala
Atmos. Chem. Phys., 18, 17863–17881, https://doi.org/10.5194/acp-18-17863-2018, https://doi.org/10.5194/acp-18-17863-2018, 2018
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Understanding the connections between aerosols, solar radiation and photosynthesis in terrestrial ecosystems is important for estimates of the CO2 balance in the atmosphere. Atmospheric aerosols and clouds influence solar radiation. In this study, we quantify the aerosol effect on solar radiation in boreal forests and study forest ecosystems response to this change in the radiation conditions. The analysis is based on atmospheric observations from several remote stations in Eurasian forests.
Jorge Saturno, Bruna A. Holanda, Christopher Pöhlker, Florian Ditas, Qiaoqiao Wang, Daniel Moran-Zuloaga, Joel Brito, Samara Carbone, Yafang Cheng, Xuguang Chi, Jeannine Ditas, Thorsten Hoffmann, Isabella Hrabe de Angelis, Tobias Könemann, Jošt V. Lavrič, Nan Ma, Jing Ming, Hauke Paulsen, Mira L. Pöhlker, Luciana V. Rizzo, Patrick Schlag, Hang Su, David Walter, Stefan Wolff, Yuxuan Zhang, Paulo Artaxo, Ulrich Pöschl, and Meinrat O. Andreae
Atmos. Chem. Phys., 18, 12817–12843, https://doi.org/10.5194/acp-18-12817-2018, https://doi.org/10.5194/acp-18-12817-2018, 2018
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Biomass burning emits light-absorbing aerosol particles that warm the atmosphere. One of them is the primarily emitted black carbon, which strongly absorbs radiation in the visible and UV spectral regions. Another one is the so-called brown carbon, a fraction of organic aerosol particles that are able to absorb radiation, especially in the UV spectral region. The contribution of both kinds of aerosol particles to light absorption over the Amazon rainforest is studied in this paper.
Mira L. Pöhlker, Florian Ditas, Jorge Saturno, Thomas Klimach, Isabella Hrabě de Angelis, Alessandro C. Araùjo, Joel Brito, Samara Carbone, Yafang Cheng, Xuguang Chi, Reiner Ditz, Sachin S. Gunthe, Bruna A. Holanda, Konrad Kandler, Jürgen Kesselmeier, Tobias Könemann, Ovid O. Krüger, Jošt V. Lavrič, Scot T. Martin, Eugene Mikhailov, Daniel Moran-Zuloaga, Luciana V. Rizzo, Diana Rose, Hang Su, Ryan Thalman, David Walter, Jian Wang, Stefan Wolff, Henrique M. J. Barbosa, Paulo Artaxo, Meinrat O. Andreae, Ulrich Pöschl, and Christopher Pöhlker
Atmos. Chem. Phys., 18, 10289–10331, https://doi.org/10.5194/acp-18-10289-2018, https://doi.org/10.5194/acp-18-10289-2018, 2018
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This paper presents the aerosol and cloud condensation nuclei (CCN) variability for characteristic atmospheric states – such as biomass burning, long-range transport, and pristine rain forest conditions – in the vulnerable and climate-relevant Amazon Basin. It summarizes the key properties of aerosol and CCN and, thus, provides a basis for an in-depth analysis of aerosol–cloud interactions in the Amazon region.
Daniel Moran-Zuloaga, Florian Ditas, David Walter, Jorge Saturno, Joel Brito, Samara Carbone, Xuguang Chi, Isabella Hrabě de Angelis, Holger Baars, Ricardo H. M. Godoi, Birgit Heese, Bruna A. Holanda, Jošt V. Lavrič, Scot T. Martin, Jing Ming, Mira L. Pöhlker, Nina Ruckteschler, Hang Su, Yaqiang Wang, Qiaoqiao Wang, Zhibin Wang, Bettina Weber, Stefan Wolff, Paulo Artaxo, Ulrich Pöschl, Meinrat O. Andreae, and Christopher Pöhlker
Atmos. Chem. Phys., 18, 10055–10088, https://doi.org/10.5194/acp-18-10055-2018, https://doi.org/10.5194/acp-18-10055-2018, 2018
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This study presents multiple years of aerosol coarse mode observations at the remote ATTO site in the Amazon Basin. The results are discussed in light of the frequent and episodic long-range transport of Saharan dust plumes in the early wet season as well as the persistent background bioaerosol cycling in the rain forest ecosystem. This work provides a solid basis for future studies on the dynamic coarse mode aerosol cycling and its biogeochemical relevance in the Amazon.
Martin Kunz, Jost V. Lavric, Christoph Gerbig, Pieter Tans, Don Neff, Christine Hummelgård, Hans Martin, Henrik Rödjegård, Burkhard Wrenger, and Martin Heimann
Atmos. Meas. Tech., 11, 1833–1849, https://doi.org/10.5194/amt-11-1833-2018, https://doi.org/10.5194/amt-11-1833-2018, 2018
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Unmanned aircraft could provide a cost-effective way to close gaps in the observation of the carbon cycle, provided that small yet accurate analysers are available. We have developed a COmpact Carbon dioxide analyser for Airborne Platforms (COCAP). During validation of its CO2 measurements in simulated and real flights we found a measurement error of 1.2 μmol mol−1 or better with no indication of bias. COCAP is a self-contained package that has proven well suited for operation on board UASs.
Peter Bergamaschi, Ute Karstens, Alistair J. Manning, Marielle Saunois, Aki Tsuruta, Antoine Berchet, Alexander T. Vermeulen, Tim Arnold, Greet Janssens-Maenhout, Samuel Hammer, Ingeborg Levin, Martina Schmidt, Michel Ramonet, Morgan Lopez, Jost Lavric, Tuula Aalto, Huilin Chen, Dietrich G. Feist, Christoph Gerbig, László Haszpra, Ove Hermansen, Giovanni Manca, John Moncrieff, Frank Meinhardt, Jaroslaw Necki, Michal Galkowski, Simon O'Doherty, Nina Paramonova, Hubertus A. Scheeren, Martin Steinbacher, and Ed Dlugokencky
Atmos. Chem. Phys., 18, 901–920, https://doi.org/10.5194/acp-18-901-2018, https://doi.org/10.5194/acp-18-901-2018, 2018
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European methane (CH4) emissions are estimated for 2006–2012 using atmospheric in situ measurements from 18 European monitoring stations and 7 different inverse models. Our analysis highlights the potential significant contribution of natural emissions from wetlands (including peatlands and wet soils) to the total European emissions. The top-down estimates of total EU-28 CH4 emissions are broadly consistent with the sum of reported anthropogenic CH4 emissions and the estimated natural emissions.
Eugene F. Mikhailov, Svetlana Mironova, Gregory Mironov, Sergey Vlasenko, Alexey Panov, Xuguang Chi, David Walter, Samara Carbone, Paulo Artaxo, Martin Heimann, Jost Lavric, Ulrich Pöschl, and Meinrat O. Andreae
Atmos. Chem. Phys., 17, 14365–14392, https://doi.org/10.5194/acp-17-14365-2017, https://doi.org/10.5194/acp-17-14365-2017, 2017
Friedemann Reum, Christoph Gerbig, Jost V. Lavric, Chris W. Rella, and Mathias Göckede
Atmos. Meas. Tech. Discuss., https://doi.org/10.5194/amt-2017-174, https://doi.org/10.5194/amt-2017-174, 2017
Revised manuscript not accepted
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High-accuracy observations of atmospheric CO2 and CH4 levels, which are vital for quantifying sources and sinks of these gases, are often obtained using Picarro greenhouse gas analyzers. These require a correction for the effects of water vapor. We report biases in CO2 and CH4 levels obtained using the traditional water correction for Picarro analyzers related to pressure changes in the optical cavity and mainly affecting measurements at low water vapor mole fractions, and how to correct them.
Rona L. Thompson, Motoki Sasakawa, Toshinobu Machida, Tuula Aalto, Doug Worthy, Jost V. Lavric, Cathrine Lund Myhre, and Andreas Stohl
Atmos. Chem. Phys., 17, 3553–3572, https://doi.org/10.5194/acp-17-3553-2017, https://doi.org/10.5194/acp-17-3553-2017, 2017
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Methane (CH4) fluxes were estimated for the high northern latitudes for 2005–2013 based on observations of atmospheric CH4 mixing ratios. Methane fluxes were found to be higher than prior estimates in northern Eurasia and Canada, especially in the Western Siberian Lowlands and the Canadian province Alberta. Significant inter-annual variations in the fluxes were found as well as a small positive trend. In Canada, the trend may be related to an increase in soil temperature over the study period.
Mira L. Pöhlker, Christopher Pöhlker, Florian Ditas, Thomas Klimach, Isabella Hrabe de Angelis, Alessandro Araújo, Joel Brito, Samara Carbone, Yafang Cheng, Xuguang Chi, Reiner Ditz, Sachin S. Gunthe, Jürgen Kesselmeier, Tobias Könemann, Jošt V. Lavrič, Scot T. Martin, Eugene Mikhailov, Daniel Moran-Zuloaga, Diana Rose, Jorge Saturno, Hang Su, Ryan Thalman, David Walter, Jian Wang, Stefan Wolff, Henrique M. J. Barbosa, Paulo Artaxo, Meinrat O. Andreae, and Ulrich Pöschl
Atmos. Chem. Phys., 16, 15709–15740, https://doi.org/10.5194/acp-16-15709-2016, https://doi.org/10.5194/acp-16-15709-2016, 2016
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The paper presents a systematic characterization of cloud condensation nuclei (CCN) concentration in the central Amazonian atmosphere. Our results show that the CCN population in this globally important ecosystem follows a pollution-related seasonal cycle, in which it mainly depends on changes in total aerosol size distribution and to a minor extent in the aerosol chemical composition. Our results allow an efficient modeling and prediction of the CCN population based on a novel approach.
Qiaoqiao Wang, Jorge Saturno, Xuguang Chi, David Walter, Jost V. Lavric, Daniel Moran-Zuloaga, Florian Ditas, Christopher Pöhlker, Joel Brito, Samara Carbone, Paulo Artaxo, and Meinrat O. Andreae
Atmos. Chem. Phys., 16, 14775–14794, https://doi.org/10.5194/acp-16-14775-2016, https://doi.org/10.5194/acp-16-14775-2016, 2016
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We use a chemical transport model to interpret observed aerosol concentrations and absorption over the Amazon Basin during the wet season. With daily temporal resolution for open fire emissions and modified aerosol optical properties, our model successfully captures the observed variation in aerosol concentrations and absorption over the Amazon Basin. The simulation indicates the important influence of open fire mainly from northern South America and from northern Africa in the wet season.
Martin Dahl, Diana Deyanova, Silvia Gütschow, Maria E. Asplund, Liberatus D. Lyimo, Ventzislav Karamfilov, Rui Santos, Mats Björk, and Martin Gullström
Biogeosciences Discuss., https://doi.org/10.5194/bg-2016-137, https://doi.org/10.5194/bg-2016-137, 2016
Manuscript not accepted for further review
M. O. Andreae, O. C. Acevedo, A. Araùjo, P. Artaxo, C. G. G. Barbosa, H. M. J. Barbosa, J. Brito, S. Carbone, X. Chi, B. B. L. Cintra, N. F. da Silva, N. L. Dias, C. Q. Dias-Júnior, F. Ditas, R. Ditz, A. F. L. Godoi, R. H. M. Godoi, M. Heimann, T. Hoffmann, J. Kesselmeier, T. Könemann, M. L. Krüger, J. V. Lavric, A. O. Manzi, A. P. Lopes, D. L. Martins, E. F. Mikhailov, D. Moran-Zuloaga, B. W. Nelson, A. C. Nölscher, D. Santos Nogueira, M. T. F. Piedade, C. Pöhlker, U. Pöschl, C. A. Quesada, L. V. Rizzo, C.-U. Ro, N. Ruckteschler, L. D. A. Sá, M. de Oliveira Sá, C. B. Sales, R. M. N. dos Santos, J. Saturno, J. Schöngart, M. Sörgel, C. M. de Souza, R. A. F. de Souza, H. Su, N. Targhetta, J. Tóta, I. Trebs, S. Trumbore, A. van Eijck, D. Walter, Z. Wang, B. Weber, J. Williams, J. Winderlich, F. Wittmann, S. Wolff, and A. M. Yáñez-Serrano
Atmos. Chem. Phys., 15, 10723–10776, https://doi.org/10.5194/acp-15-10723-2015, https://doi.org/10.5194/acp-15-10723-2015, 2015
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This paper describes the Amazon Tall Tower Observatory (ATTO), a new atmosphere-biosphere observatory located in the remote Amazon Basin. It presents results from ecosystem ecology, meteorology, trace gas, and aerosol measurements collected at the ATTO site during the first 3 years of operation.
A. Berchet, I. Pison, F. Chevallier, J.-D. Paris, P. Bousquet, J.-L. Bonne, M. Y. Arshinov, B. D. Belan, C. Cressot, D. K. Davydov, E. J. Dlugokencky, A. V. Fofonov, A. Galanin, J. Lavrič, T. Machida, R. Parker, M. Sasakawa, R. Spahni, B. D. Stocker, and J. Winderlich
Biogeosciences, 12, 5393–5414, https://doi.org/10.5194/bg-12-5393-2015, https://doi.org/10.5194/bg-12-5393-2015, 2015
C. Lauritano, M. Ruocco, E. Dattolo, M. C. Buia, J. Silva, R. Santos, I. Olivé, M. M. Costa, and G. Procaccini
Biogeosciences, 12, 4185–4194, https://doi.org/10.5194/bg-12-4185-2015, https://doi.org/10.5194/bg-12-4185-2015, 2015
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The effects of two marine volcanic vents, utilized as proxy of ocean acidification and global changes, are studied at molecular level in P. oceanica (seagrass). Stress-related genes (antioxidants and HSP) were differently activated in the two sites, at comparable CO2 levels. Metal detoxification genes were mostly down-regulated. This suggests that plants face different types of stressors and that factors other than CO2 and acidification can cause stress to marine organisms near volcanic vents.
E. J. Morgan, J. V. Lavrič, T. Seifert, T. Chicoine, A. Day, J. Gomez, R. Logan, J. Sack, T. Shuuya, E. G. Uushona, K. Vincent, U. Schultz, E.-G. Brunke, C. Labuschagne, R. L. Thompson, S. Schmidt, A. C. Manning, and M. Heimann
Atmos. Meas. Tech., 8, 2233–2250, https://doi.org/10.5194/amt-8-2233-2015, https://doi.org/10.5194/amt-8-2233-2015, 2015
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We describe the analytical techniques used in the creation of a new background site for continuous measurements of greenhouse gases, carbon monoxide, and atmospheric oxygen in the Namib Desert. The measurement system is semi-automated and optimized for operation in a remote locale. Measurement uncertainties, gas handling, calibration schemes, drift corrections, and instrument performance are discussed.
I. Weinberg, E. Bahlmann, T. Eckhardt, W. Michaelis, and R. Seifert
Biogeosciences, 12, 1697–1711, https://doi.org/10.5194/bg-12-1697-2015, https://doi.org/10.5194/bg-12-1697-2015, 2015
B. Martínez-Crego, I. Olivé, and R. Santos
Biogeosciences, 11, 7237–7249, https://doi.org/10.5194/bg-11-7237-2014, https://doi.org/10.5194/bg-11-7237-2014, 2014
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We found that the multi-level meadow response to nutrient enrichment was faster and stronger than to CO2 enrichment, being both mediated by shifts in leaf epiphyte or sediment communities. Our findings highlight the relevance of integrative approaches considering not only species interactions and connections between organization levels, but also the effect of interactive stressors, to anticipate the evolution of seagrass meadows in the near future and to endorse conservation efforts.
A. Berchet, I. Pison, F. Chevallier, P. Bousquet, S. Conil, M. Geever, T. Laurila, J. Lavrič, M. Lopez, J. Moncrieff, J. Necki, M. Ramonet, M. Schmidt, M. Steinbacher, and J. Tarniewicz
Atmos. Chem. Phys., 13, 7115–7132, https://doi.org/10.5194/acp-13-7115-2013, https://doi.org/10.5194/acp-13-7115-2013, 2013
Related subject area
Biogeochemistry: Coastal Ocean
Long-term variations in pH in coastal waters along the Korean Peninsula
The effect of carbonate mineral additions on biogeochemical conditions in surface sediments and benthic–pelagic exchange fluxes
Assessing the impacts of simulated ocean alkalinity enhancement on viability and growth of nearshore species of phytoplankton
Responses of microbial metabolic rates to non-equilibrated silicate- versus calcium-based ocean alkalinity enhancement
High metabolic zinc demand within native Amundsen and Ross sea phytoplankton communities determined by stable isotope uptake rate measurements
The influence of zooplankton and oxygen on the particulate organic carbon flux in the Benguela Upwelling System
Reviews and syntheses: Biological indicators of low-oxygen stress in marine water-breathing animals
Temperature-enhanced effects of iron on Southern Ocean phytoplankton
Riverine nutrient impact on global ocean nitrogen cycle feedbacks and marine primary production in an Earth system model
Effects of Submarine Groundwater on Nutrient Concentration and Primary Production in a Deep Bay of the Japan Sea
The Northeast Greenland Shelf as a potential late-summer CO2 source to the atmosphere
Technical note: Ocean Alkalinity Enhancement Pelagic Impact Intercomparison Project (OAEPIIP)
Estimates of carbon sequestration potential in an expanding Arctic fjord (Hornsund, Svalbard) affected by dark plumes of glacial meltwater
An assessment of ocean alkalinity enhancement using aqueous hydroxides: kinetics, efficiency, and precipitation thresholds
Dissolved nitric oxide in the lower Elbe Estuary and the Port of Hamburg area
The bacteria-protist link as a main route of dissolved organic matter across contrasting productivity areas in the Patagonian Shelf
Technical note: New approach for the determination of N2 fixation rates by coupling a membrane equilibrator to a mass spectrometer on voluntary observing ships
Variable contribution of wastewater treatment plant effluents to downstream nitrous oxide concentrations and emissions
Depositional controls and budget of organic carbon burial in fine-grained sediments of the North Sea – the Helgoland Mud Area as a test field
Improved understanding of eutrophication trends, indicators and problem areas using machine learning
Distribution of nutrients and dissolved organic matter in a eutrophic equatorial estuary: the Johor River and the East Johor Strait
Amplified bottom water acidification rates on the Bering Sea shelf from 1970–2022
Investigating the effect of silicate- and calcium-based ocean alkalinity enhancement on diatom silicification
Ocean alkalinity enhancement using sodium carbonate salts does not lead to measurable changes in Fe dynamics in a mesocosm experiment
Quantification and mitigation of bottom-trawling impacts on sedimentary organic carbon stocks in the North Sea
Influence of ocean alkalinity enhancement with olivine or steel slag on a coastal plankton community in Tasmania
Reviews and synthesis: increasing hypoxia in eastern boundary upwelling systems: a major stressor for zooplankton
Multi-model comparison of trends and controls of near-bed oxygen concentration on the northwest European continental shelf under climate change
Picoplanktonic methane production in eutrophic surface waters
Vertical mixing alleviates autumnal oxygen deficiency in the central North Sea
Hypoxia also occurs in small highly turbid estuaries: the example of the Charente (Bay of Biscay)
Seasonality and response of ocean acidification and hypoxia to major environmental anomalies in the southern Salish Sea, North America (2014–2018)
Ocean Alkalinity Enhancement (OAE) does not cause cellular stress in a phytoplankton community of the sub-tropical Atlantic Ocean
Oceanographic processes driving low-oxygen conditions inside Patagonian fjords
Above- and belowground plant mercury dynamics in a salt marsh estuary in Massachusetts, USA
Variability and drivers of carbonate chemistry at shellfish aquaculture sites in the Salish Sea, British Columbia
Unusual Hemiaulus bloom influences ocean productivity in Northeastern US Shelf waters
Insights into carbonate environmental conditions in the Chukchi Sea
UAV approaches for improved mapping of vegetation cover and estimation of carbon storage of small saltmarshes: examples from Loch Fleet, northeast Scotland
Iron “ore” nothing: benthic iron fluxes from the oxygen-deficient Santa Barbara Basin enhance phytoplankton productivity in surface waters
Marine anoxia initiates giant sulfur-oxidizing bacterial mat proliferation and associated changes in benthic nitrogen, sulfur, and iron cycling in the Santa Barbara Basin, California Borderland
Uncertainty in the evolution of northwestern North Atlantic circulation leads to diverging biogeochemical projections
The additionality problem of ocean alkalinity enhancement
Short-term variation in pH in seawaters around coastal areas of Japan: characteristics and forcings
Revisiting the applicability and constraints of molybdenum- and uranium-based paleo redox proxies: comparing two contrasting sill fjords
Influence of a small submarine canyon on biogenic matter export flux in the lower St. Lawrence Estuary, eastern Canada
Single-celled bioturbators: benthic foraminifera mediate oxygen penetration and prokaryotic diversity in intertidal sediment
Assessing impacts of coastal warming, acidification, and deoxygenation on Pacific oyster (Crassostrea gigas) farming: a case study in the Hinase area, Okayama Prefecture, and Shizugawa Bay, Miyagi Prefecture, Japan
Multiple nitrogen sources for primary production inferred from δ13C and δ15N in the southern Sea of Japan
Influence of manganese cycling on alkalinity in the redox stratified water column of Chesapeake Bay
Yong-Woo Lee, Mi-Ok Park, Seong-Gil Kim, Tae-Hoon Kim, Yong Hwa Oh, Sang Heon Lee, and DongJoo Joung
Biogeosciences, 22, 675–690, https://doi.org/10.5194/bg-22-675-2025, https://doi.org/10.5194/bg-22-675-2025, 2025
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Long-term pH variation in coastal waters along the Korean Peninsula was assessed for the first time, and it exhibited no significant pH change over an 11-year period. This contrasts with the ongoing pH decline in open oceans and other coastal areas. Analysis of environmental data showed that pH is mainly controlled by dissolved oxygen in bottom waters. This suggests that ocean warming could cause a pH decline in Korean coastal waters, affecting many fish and seaweed aquaculture operations.
Kadir Biçe, Tristen Myers Stewart, George G. Waldbusser, and Christof Meile
Biogeosciences, 22, 641–657, https://doi.org/10.5194/bg-22-641-2025, https://doi.org/10.5194/bg-22-641-2025, 2025
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We studied the effect of addition of carbonate minerals on coastal sediments. We carried out laboratory experiments to quantify the dissolution kinetics and integrated these observations into a numerical model that describes biogeochemical cycling in surficial sediments. Using the model, we demonstrate the buffering effect of the mineral additions and their duration. We quantify the effect under different environmental conditions and assess the potential for increased atmospheric CO2 uptake.
Jessica L. Oberlander, Mackenzie E. Burke, Cat A. London, and Hugh L. MacIntyre
Biogeosciences, 22, 499–512, https://doi.org/10.5194/bg-22-499-2025, https://doi.org/10.5194/bg-22-499-2025, 2025
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Ocean alkalinity enhancement (OAE) is a promising negative emission technology that results in the net sequestration of atmospheric carbon. In this paper, we assess the potential impact of OAE on phytoplankton through an analysis of prior studies and the effects of simulated OAE on photosynthetic competence. Our findings suggest that there may be little if any significant impact on most phytoplankton studied to date if OAE is conducted in well-flushed, nearshore environments.
Laura Marín-Samper, Javier Arístegui, Nauzet Hernández-Hernández, and Ulf Riebesell
Biogeosciences, 21, 5707–5724, https://doi.org/10.5194/bg-21-5707-2024, https://doi.org/10.5194/bg-21-5707-2024, 2024
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This study exposed a natural community to two non-CO2-equilibrated ocean alkalinity enhancement (OAE) deployments using different minerals. Adding alkalinity in this manner decreases dissolved CO2, essential for photosynthesis. While photosynthesis was not suppressed, bloom formation was mildly delayed, potentially impacting marine food webs. The study emphasizes the need for further research on OAE without prior equilibration and on its ecological implications.
Riss M. Kell, Rebecca J. Chmiel, Deepa Rao, Dawn M. Moran, Matthew R. McIlvin, Tristan J. Horner, Nicole L. Schanke, Ichiko Sugiyama, Robert B. Dunbar, Giacomo R. DiTullio, and Mak A. Saito
Biogeosciences, 21, 5685–5706, https://doi.org/10.5194/bg-21-5685-2024, https://doi.org/10.5194/bg-21-5685-2024, 2024
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Despite interest in modeling the biogeochemical uptake and cycling of the trace metal zinc (Zn), measurements of Zn uptake in natural marine phytoplankton communities have not been conducted previously. To fill this gap, we employed a stable isotope uptake rate measurement method to quantify Zn uptake into natural phytoplankton assemblages within the Southern Ocean. Zn demand was high and rapid enough to depress the inventory of Zn available to phytoplankton on seasonal timescales.
Luisa Chiara Meiritz, Tim Rixen, Anja Karin van der Plas, Tarron Lamont, and Niko Lahajnar
Biogeosciences, 21, 5261–5276, https://doi.org/10.5194/bg-21-5261-2024, https://doi.org/10.5194/bg-21-5261-2024, 2024
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Moored and drifting sediment trap experiments in the northern (nBUS) and southern (sBUS) Benguela Upwelling System showed that active carbon fluxes by vertically migrating zooplankton were about 3 times higher in the sBUS than in the nBUS. Despite these large variabilities, the mean passive particulate organic carbon (POC) fluxes were almost equal in the two subsystems. The more intense near-bottom oxygen minimum layer seems to lead to higher POC fluxes and accumulation rates in the nBUS.
Michael R. Roman, Andrew H. Altieri, Denise Breitburg, Erica M. Ferrer, Natalya D. Gallo, Shin-ichi Ito, Karin Limburg, Kenneth Rose, Moriaki Yasuhara, and Lisa A. Levin
Biogeosciences, 21, 4975–5004, https://doi.org/10.5194/bg-21-4975-2024, https://doi.org/10.5194/bg-21-4975-2024, 2024
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Oxygen-depleted ocean waters have increased worldwide. In order to improve our understanding of the impacts of this oxygen loss on marine life it is essential that we develop reliable indicators that track the negative impacts of low oxygen. We review various indicators of low-oxygen stress for marine animals including their use, research needs, and application to confront the challenges of ocean oxygen loss.
Charlotte Eich, Mathijs van Manen, J. Scott P. McCain, Loay J. Jabre, Willem H. van de Poll, Jinyoung Jung, Sven B. E. H. Pont, Hung-An Tian, Indah Ardiningsih, Gert-Jan Reichart, Erin M. Bertrand, Corina P. D. Brussaard, and Rob Middag
Biogeosciences, 21, 4637–4663, https://doi.org/10.5194/bg-21-4637-2024, https://doi.org/10.5194/bg-21-4637-2024, 2024
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Phytoplankton growth in the Southern Ocean (SO) is often limited by low iron (Fe) concentrations. Sea surface warming impacts Fe availability and can affect phytoplankton growth. We used shipboard Fe clean incubations to test how changes in Fe and temperature affect SO phytoplankton. Their abundances usually increased with Fe addition and temperature increase, with Fe being the major factor. These findings imply potential shifts in ecosystem structure, impacting food webs and elemental cycling.
Miriam Tivig, David P. Keller, and Andreas Oschlies
Biogeosciences, 21, 4469–4493, https://doi.org/10.5194/bg-21-4469-2024, https://doi.org/10.5194/bg-21-4469-2024, 2024
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Marine biological production is highly dependent on the availability of nitrogen and phosphorus. Rivers are the main source of phosphorus to the oceans but poorly represented in global model oceans. We include dissolved nitrogen and phosphorus from river export in a global model ocean and find that the addition of riverine phosphorus affects marine biology on millennial timescales more than riverine nitrogen alone. Globally, riverine phosphorus input increases primary production rates.
Menghong Dong, Xinyu Guo, Takuya Matsuura, Taichi Tebakari, and Jing Zhang
EGUsphere, https://doi.org/10.5194/egusphere-2024-2581, https://doi.org/10.5194/egusphere-2024-2581, 2024
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Submarine groundwater discharge (SGD), a common coastal hydrological process that involves submarine inflow of groundwater into the sea, is associated with a large nutrient load. To clarify the distribution of SGD-derived nutrients after release at the bottom of the sea and their contribution to phytoplankton growth in the marine ecosystem, we modeled the SGD process in Toyama Bay using a specialized computer code that can distinguish SGD-derived nutrients from nutrients from other sources.
Esdoorn Willcox, Marcos Lemes, Thomas Juul-Pedersen, Mikael Kristian Sejr, Johnna Marchiano Holding, and Søren Rysgaard
Biogeosciences, 21, 4037–4050, https://doi.org/10.5194/bg-21-4037-2024, https://doi.org/10.5194/bg-21-4037-2024, 2024
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In this work, we measured the chemistry of seawater from samples obtained from different depths and locations off the east coast of the Northeast Greenland National Park to determine what is influencing concentrations of dissolved CO2. Historically, the region has always been thought to take up CO2 from the atmosphere, but we show that it is possible for the region to become a source in late summer. We discuss the variables that may be related to such changes.
Lennart Thomas Bach, Aaron James Ferderer, Julie LaRoche, and Kai Georg Schulz
Biogeosciences, 21, 3665–3676, https://doi.org/10.5194/bg-21-3665-2024, https://doi.org/10.5194/bg-21-3665-2024, 2024
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Ocean alkalinity enhancement (OAE) is an emerging marine CO2 removal method, but its environmental effects are insufficiently understood. The OAE Pelagic Impact Intercomparison Project (OAEPIIP) provides funding for a standardized and globally replicated microcosm experiment to study the effects of OAE on plankton communities. Here, we provide a detailed manual for the OAEPIIP experiment. We expect OAEPIIP to help build scientific consensus on the effects of OAE on plankton.
Marlena Szeligowska, Déborah Benkort, Anna Przyborska, Mateusz Moskalik, Bernabé Moreno, Emilia Trudnowska, and Katarzyna Błachowiak-Samołyk
Biogeosciences, 21, 3617–3639, https://doi.org/10.5194/bg-21-3617-2024, https://doi.org/10.5194/bg-21-3617-2024, 2024
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The European Arctic is experiencing rapid regional warming, causing glaciers that terminate in the sea to retreat onto land. Due to this process, the area of a well-studied fjord, Hornsund, has increased by around 100 km2 (40%) since 1976. Combining satellite and in situ data with a mathematical model, we estimated that, despite some negative consequences of glacial meltwater release, such emerging coastal waters could mitigate climate change by increasing carbon uptake and storage by sediments.
Mallory C. Ringham, Nathan Hirtle, Cody Shaw, Xi Lu, Julian Herndon, Brendan R. Carter, and Matthew D. Eisaman
Biogeosciences, 21, 3551–3570, https://doi.org/10.5194/bg-21-3551-2024, https://doi.org/10.5194/bg-21-3551-2024, 2024
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Ocean alkalinity enhancement leverages the large surface area and carbon storage capacity of the oceans to store atmospheric CO2 as dissolved bicarbonate. We monitored CO2 uptake in seawater treated with NaOH to establish operational boundaries for carbon removal experiments. Results show that CO2 equilibration occurred on the order of weeks to months, was consistent with values expected from equilibration calculations, and was limited by mineral precipitation at high pH and CaCO3 saturation.
Riel Carlo O. Ingeniero, Gesa Schulz, and Hermann W. Bange
Biogeosciences, 21, 3425–3440, https://doi.org/10.5194/bg-21-3425-2024, https://doi.org/10.5194/bg-21-3425-2024, 2024
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Our research is the first to measure dissolved NO concentrations in temperate estuarine waters, providing insights into its distribution under varying conditions and enhancing our understanding of its production processes. Dissolved NO was supersaturated in the Elbe Estuary, indicating that it is a source of atmospheric NO. The observed distribution of dissolved NO most likely resulted from nitrification.
Celeste López-Abbate, John E. Garzón-Cardona, Ricardo Silva, Juan-Carlos Molinero, Laura A. Ruiz-Etcheverry, Ana M. Martínez, Azul S. Gilabert, and Rubén J. Lara
EGUsphere, https://doi.org/10.5194/egusphere-2024-1860, https://doi.org/10.5194/egusphere-2024-1860, 2024
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This study examines how microbial community structure, growth, and grazing impact the DOM pool in the Patagonian Shelf. Despite higher phytoplankton biomass, faster-growing bacteria were selectively grazed by protists leading to DOM accumulation, likely due to a reduction in DOM-consuming bacteria and the addition of egestion compounds. Experimental data showed that while bacteria remained as the primarily shapers of DOM quality, grazing pressure impacted on DOM accumulation.
Sören Iwe, Oliver Schmale, and Bernd Schneider
EGUsphere, https://doi.org/10.5194/egusphere-2024-2049, https://doi.org/10.5194/egusphere-2024-2049, 2024
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We present a novel method to quantify N2 fixation by cyanobacteria, crucial in Baltic Sea eutrophication. Our Gas Equilibrium – Membrane-Inlet Mass Spectrometer (GE-MIMS), designed for operation on voluntary observing ships (VOS), enables large-scale monitoring of surface water N2 depletion caused by N2 fixation. Laboratory tests confirm the device’s accuracy and precision, ensuring it can complement current methods and contribute valuable data to better understand N2 fixation in the Baltic Sea.
Weiyi Tang, Jeff Talbott, Timothy Jones, and Bess B. Ward
Biogeosciences, 21, 3239–3250, https://doi.org/10.5194/bg-21-3239-2024, https://doi.org/10.5194/bg-21-3239-2024, 2024
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Wastewater treatment plants (WWTPs) are known to be hotspots of greenhouse gas emissions. However, the impact of WWTPs on the emission of the greenhouse gas N2O in downstream aquatic environments is less constrained. We found spatially and temporally variable but overall higher N2O concentrations and fluxes in waters downstream of WWTPs, pointing to the need for efficient N2O removal in addition to the treatment of nitrogen in WWTPs.
Daniel Müller, Bo Liu, Walter Geibert, Moritz Holtappels, Lasse Sander, Elda Miramontes, Heidi Taubner, Susann Henkel, Kai-Uwe Hinrichs, Denise Bethke, Ingrid Dohrmann, and Sabine Kasten
EGUsphere, https://doi.org/10.5194/egusphere-2024-1632, https://doi.org/10.5194/egusphere-2024-1632, 2024
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Coastal and shelf sediments are the most important sinks for organic carbon (OC) on Earth. We produced a new high-resolution sediment and pore-water dataset from the Helgoland Mud Area (HMA), North Sea, to determine, which depositional factors control the preservation of OC. The burial efficiency is highest in an area of high sedimentation and terrigenous OC. The HMA covers 0.09 % of the North Sea, but accounts for 0.76 % of its OC accumulation, highlighting the importance of the depocentre.
Deep S. Banerjee and Jozef Skakala
EGUsphere, https://doi.org/10.22541/essoar.171405637.76928549/v1, https://doi.org/10.22541/essoar.171405637.76928549/v1, 2024
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Nitrate is a crucial nutrient in oceans. Excess nutrients can trigger uncontrolled algae growth (eutrophication), damaging marine ecosystems. We used a machine learning tool to generate a skilled, gap-free, bi-decadal surface nitrate dataset from sparse observations. This dataset reveals areas on the North West European Shelf at risk of eutrophication, bi-decadal trends in coastal nitrate, and an impact of winter nitrate on spring phytoplankton blooms.
Amanda Y. L. Cheong, Kogila Vani Annammala, Ee Ling Yong, Yongli Zhou, Robert S. Nichols, and Patrick Martin
Biogeosciences, 21, 2955–2971, https://doi.org/10.5194/bg-21-2955-2024, https://doi.org/10.5194/bg-21-2955-2024, 2024
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We measured nutrients and dissolved organic matter for 1 year in a eutrophic tropical estuary to understand their sources and cycling. Our data show that the dissolved organic matter originates partly from land and partly from microbial processes in the water. Internal recycling is likely important for maintaining high nutrient concentrations, and we found that there is often excess nitrogen compared to silicon and phosphorus. Our data help to explain how eutrophication persists in this system.
Darren Pilcher, Jessica Cross, Natalie Monacci, Linquan Mu, Kelly Kearney, Albert Hermann, and Wei Cheng
EGUsphere, https://doi.org/10.5194/egusphere-2024-1096, https://doi.org/10.5194/egusphere-2024-1096, 2024
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The Bering Sea shelf is a highly productive marine ecosystem that is vulnerable to ocean acidification. We use a computational model to simulate the carbon cycle and acidification rates from 1970–2022. The results suggest that bottom water acidification rates are more than twice as great as surface rates. Bottom waters are also naturally more acidic, thus these waters will pass key thresholds known to negatively impact marine organisms, such as red king crab, much sooner than surface waters.
Aaron Ferderer, Kai G. Schulz, Ulf Riebesell, Kirralee G. Baker, Zanna Chase, and Lennart T. Bach
Biogeosciences, 21, 2777–2794, https://doi.org/10.5194/bg-21-2777-2024, https://doi.org/10.5194/bg-21-2777-2024, 2024
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Ocean alkalinity enhancement (OAE) is a promising method of atmospheric carbon removal; however, its ecological impacts remain largely unknown. We assessed the effects of simulated silicate- and calcium-based mineral OAE on diatom silicification. We found that increased silicate concentrations from silicate-based OAE increased diatom silicification. In contrast, the enhancement of alkalinity had no effect on community silicification and minimal effects on the silicification of different genera.
David González-Santana, María Segovia, Melchor González-Dávila, Librada Ramírez, Aridane G. González, Leonardo J. Pozzo-Pirotta, Veronica Arnone, Victor Vázquez, Ulf Riebesell, and J. Magdalena Santana-Casiano
Biogeosciences, 21, 2705–2715, https://doi.org/10.5194/bg-21-2705-2024, https://doi.org/10.5194/bg-21-2705-2024, 2024
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In a recent experiment off the coast of Gran Canaria (Spain), scientists explored a method called ocean alkalinization enhancement (OAE), where carbonate minerals were added to seawater. This process changed the levels of certain ions in the water, affecting its pH and buffering capacity. The researchers were particularly interested in how this could impact the levels of essential trace metals in the water.
Lucas Porz, Wenyan Zhang, Nils Christiansen, Jan Kossack, Ute Daewel, and Corinna Schrum
Biogeosciences, 21, 2547–2570, https://doi.org/10.5194/bg-21-2547-2024, https://doi.org/10.5194/bg-21-2547-2024, 2024
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Seafloor sediments store a large amount of carbon, helping to naturally regulate Earth's climate. If disturbed, some sediment particles can turn into CO2, but this effect is not well understood. Using computer simulations, we found that bottom-contacting fishing gears release about 1 million tons of CO2 per year in the North Sea, one of the most heavily fished regions globally. We show how protecting certain areas could reduce these emissions while also benefitting seafloor-living animals.
Jiaying A. Guo, Robert F. Strzepek, Kerrie M. Swadling, Ashley T. Townsend, and Lennart T. Bach
Biogeosciences, 21, 2335–2354, https://doi.org/10.5194/bg-21-2335-2024, https://doi.org/10.5194/bg-21-2335-2024, 2024
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Ocean alkalinity enhancement aims to increase atmospheric CO2 sequestration by adding alkaline materials to the ocean. We assessed the environmental effects of olivine and steel slag powder on coastal plankton. Overall, slag is more efficient than olivine in releasing total alkalinity and, thus, in its ability to sequester CO2. Slag also had less environmental effect on the enclosed plankton communities when considering its higher CO2 removal potential based on this 3-week experiment.
Leissing Frederick, Mauricio A. Urbina, and Ruben Escribano
EGUsphere, https://doi.org/10.5194/egusphere-2024-836, https://doi.org/10.5194/egusphere-2024-836, 2024
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Evidence shows that due to global warming zooplankton inhabiting the coastal upwelling zone are exposed to increasing hypoxia affecting their physiology, metabolism, and population dynamics. The adaptive responses of zooplankton to cope with mild/severe hypoxia may depend on trade-offs with other metabolic/energy-demands, implying less energy for growth, feeding and reproduction with ecological consequences for the zooplankton populations and the marine food web.
Giovanni Galli, Sarah Wakelin, James Harle, Jason Holt, and Yuri Artioli
Biogeosciences, 21, 2143–2158, https://doi.org/10.5194/bg-21-2143-2024, https://doi.org/10.5194/bg-21-2143-2024, 2024
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This work shows that, under a high-emission scenario, oxygen concentration in deep water of parts of the North Sea and Celtic Sea can become critically low (hypoxia) towards the end of this century. The extent and frequency of hypoxia depends on the intensity of climate change projected by different climate models. This is the result of a complex combination of factors like warming, increase in stratification, changes in the currents and changes in biological processes.
Sandy E. Tenorio and Laura Farías
Biogeosciences, 21, 2029–2050, https://doi.org/10.5194/bg-21-2029-2024, https://doi.org/10.5194/bg-21-2029-2024, 2024
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Time series studies show that CH4 is highly dynamic on the coastal ocean surface and planktonic communities are linked to CH4 accumulation, as found in coastal upwelling off Chile. We have identified the crucial role of picoplankton (> 3 µm) in CH4 recycling, especially with the addition of methylated substrates (trimethylamine and methylphosphonic acid) during upwelling and non-upwelling periods. These insights improve understanding of surface ocean CH4 recycling, aiding CH4 emission estimates.
Charlotte A. J. Williams, Tom Hull, Jan Kaiser, Claire Mahaffey, Naomi Greenwood, Matthew Toberman, and Matthew R. Palmer
Biogeosciences, 21, 1961–1971, https://doi.org/10.5194/bg-21-1961-2024, https://doi.org/10.5194/bg-21-1961-2024, 2024
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Oxygen (O2) is a key indicator of ocean health. The risk of O2 loss in the productive coastal/continental slope regions is increasing. Autonomous underwater vehicles equipped with O2 optodes provide lots of data but have problems resolving strong vertical O2 changes. Here we show how to overcome this and calculate how much O2 is supplied to the low-O2 bottom waters via mixing. Bursts in mixing supply nearly all of the O2 to bottom waters in autumn, stopping them reaching ecologically low levels.
Sabine Schmidt and Ibrahima Iris Diallo
Biogeosciences, 21, 1785–1800, https://doi.org/10.5194/bg-21-1785-2024, https://doi.org/10.5194/bg-21-1785-2024, 2024
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Along the French coast facing the Bay of Biscay, the large Gironde and Loire estuaries suffer from hypoxia. This prompted a study of the small Charente estuary located between them. This work reveals a minimum oxygen zone in the Charente estuary, which extends for about 25 km. Temperature is the main factor controlling the hypoxia. This calls for the monitoring of small turbid macrotidal estuaries that are vulnerable to hypoxia, a risk expected to increase with global warming.
Simone R. Alin, Jan A. Newton, Richard A. Feely, Samantha Siedlecki, and Dana Greeley
Biogeosciences, 21, 1639–1673, https://doi.org/10.5194/bg-21-1639-2024, https://doi.org/10.5194/bg-21-1639-2024, 2024
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We provide a new multi-stressor data product that allows us to characterize the seasonality of temperature, O2, and CO2 in the southern Salish Sea and delivers insights into the impacts of major marine heatwave and precipitation anomalies on regional ocean acidification and hypoxia. We also describe the present-day frequencies of temperature, O2, and ocean acidification conditions that cross thresholds of sensitive regional species that are economically or ecologically important.
Librada Ramírez, Leonardo J. Pozzo-Pirotta, Aja Trebec, Víctor Manzanares-Vázquez, José L. Díez, Javier Arístegui, Ulf Riebesell, Stephen D. Archer, and María Segovia
EGUsphere, https://doi.org/10.5194/egusphere-2024-847, https://doi.org/10.5194/egusphere-2024-847, 2024
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We studied the potential effects of increasing ocean alkalinity on a natural plankton community in subtropical waters of the Atlantic near Gran Canaria, Spain. Alkalinity is the capacity of water to resist acidification and plankton are usually microscopic plants (phytoplankton) and animals (zooplankton), often less than 2,5 cm in length. This study suggests that increasing ocean alkalinity did not have a significant negative impact on the studied plankton community.
Pamela Linford, Iván Pérez-Santos, Paulina Montero, Patricio A. Díaz, Claudia Aracena, Elías Pinilla, Facundo Barrera, Manuel Castillo, Aida Alvera-Azcárate, Mónica Alvarado, Gabriel Soto, Cécile Pujol, Camila Schwerter, Sara Arenas-Uribe, Pilar Navarro, Guido Mancilla-Gutiérrez, Robinson Altamirano, Javiera San Martín, and Camila Soto-Riquelme
Biogeosciences, 21, 1433–1459, https://doi.org/10.5194/bg-21-1433-2024, https://doi.org/10.5194/bg-21-1433-2024, 2024
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The Patagonian fjords comprise a world region where low-oxygen water and hypoxia conditions are observed. An in situ dataset was used to quantify the mechanism involved in the presence of these conditions in northern Patagonian fjords. Water mass analysis confirmed the contribution of Equatorial Subsurface Water in the advection of the low-oxygen water, and hypoxic conditions occurred when the community respiration rate exceeded the gross primary production.
Ting Wang, Buyun Du, Inke Forbrich, Jun Zhou, Joshua Polen, Elsie M. Sunderland, Prentiss H. Balcom, Celia Chen, and Daniel Obrist
Biogeosciences, 21, 1461–1476, https://doi.org/10.5194/bg-21-1461-2024, https://doi.org/10.5194/bg-21-1461-2024, 2024
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The strong seasonal increases of Hg in aboveground biomass during the growing season and the lack of changes observed after senescence in this salt marsh ecosystem suggest physiologically controlled Hg uptake pathways. The Hg sources found in marsh aboveground tissues originate from a mix of sources, unlike terrestrial ecosystems, where atmospheric GEM is the main source. Belowground plant tissues mostly take up Hg from soils. Overall, the salt marsh currently serves as a small net Hg sink.
Eleanor Simpson, Debby Ianson, Karen E. Kohfeld, Ana C. Franco, Paul A. Covert, Marty Davelaar, and Yves Perreault
Biogeosciences, 21, 1323–1353, https://doi.org/10.5194/bg-21-1323-2024, https://doi.org/10.5194/bg-21-1323-2024, 2024
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Shellfish aquaculture operates in nearshore areas where data on ocean acidification parameters are limited. We show daily and seasonal variability in pH and saturation states of calcium carbonate at nearshore aquaculture sites in British Columbia, Canada, and determine the contributing drivers of this variability. We find that nearshore locations have greater variability than open waters and that the uptake of carbon by phytoplankton is the major driver of pH and saturation state variability.
S. Alejandra Castillo Cieza, Rachel H. R. Stanley, Pierre Marrec, Diana N. Fontaine, E. Taylor Crockford, Dennis J. McGillicuddy Jr., Arshia Mehta, Susanne Menden-Deuer, Emily E. Peacock, Tatiana A. Rynearson, Zoe O. Sandwith, Weifeng Zhang, and Heidi M. Sosik
Biogeosciences, 21, 1235–1257, https://doi.org/10.5194/bg-21-1235-2024, https://doi.org/10.5194/bg-21-1235-2024, 2024
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The coastal ocean in the northeastern USA provides many services, including fisheries and habitats for threatened species. In summer 2019, a bloom occurred of a large unusual phytoplankton, the diatom Hemiaulus, with nitrogen-fixing symbionts. This led to vast changes in productivity and grazing rates in the ecosystem. This work shows that the emergence of one species can have profound effects on ecosystem function. Such changes may become more prevalent as the ocean warms due to climate change.
Claudine Hauri, Brita Irving, Sam Dupont, Rémi Pagés, Donna D. W. Hauser, and Seth L. Danielson
Biogeosciences, 21, 1135–1159, https://doi.org/10.5194/bg-21-1135-2024, https://doi.org/10.5194/bg-21-1135-2024, 2024
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Arctic marine ecosystems are highly susceptible to impacts of climate change and ocean acidification. We present pH and pCO2 time series (2016–2020) from the Chukchi Ecosystem Observatory and analyze the drivers of the current conditions to get a better understanding of how climate change and ocean acidification could affect the ecological niches of organisms.
William Hiles, Lucy C. Miller, Craig Smeaton, and William E. N. Austin
Biogeosciences, 21, 929–948, https://doi.org/10.5194/bg-21-929-2024, https://doi.org/10.5194/bg-21-929-2024, 2024
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Saltmarsh soils may help to limit the rate of climate change by storing carbon. To understand their impacts, they must be accurately mapped. We use drone data to estimate the size of three saltmarshes in NE Scotland. We find that drone imagery, combined with tidal data, can reliably inform our understanding of saltmarsh size. When compared with previous work using vegetation communities, we find that our most reliable new estimates of stored carbon are 15–20 % smaller than previously estimated.
De'Marcus Robinson, Anh L. D. Pham, David J. Yousavich, Felix Janssen, Frank Wenzhöfer, Eleanor C. Arrington, Kelsey M. Gosselin, Marco Sandoval-Belmar, Matthew Mar, David L. Valentine, Daniele Bianchi, and Tina Treude
Biogeosciences, 21, 773–788, https://doi.org/10.5194/bg-21-773-2024, https://doi.org/10.5194/bg-21-773-2024, 2024
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The present study suggests that high release of ferrous iron from the seafloor of the oxygen-deficient Santa Barabara Basin (California) supports surface primary productivity, creating positive feedback on seafloor iron release by enhancing low-oxygen conditions in the basin.
David J. Yousavich, De'Marcus Robinson, Xuefeng Peng, Sebastian J. E. Krause, Frank Wenzhöfer, Felix Janssen, Na Liu, Jonathan Tarn, Franklin Kinnaman, David L. Valentine, and Tina Treude
Biogeosciences, 21, 789–809, https://doi.org/10.5194/bg-21-789-2024, https://doi.org/10.5194/bg-21-789-2024, 2024
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Declining oxygen (O2) concentrations in coastal oceans can threaten people’s ways of life and food supplies. Here, we investigate how mats of bacteria that proliferate on the seafloor of the Santa Barbara Basin sustain and potentially worsen these O2 depletion events through their unique chemoautotrophic metabolism. Our study shows how changes in seafloor microbiology and geochemistry brought on by declining O2 concentrations can help these mats grow as well as how that growth affects the basin.
Krysten Rutherford, Katja Fennel, Lina Garcia Suarez, and Jasmin G. John
Biogeosciences, 21, 301–314, https://doi.org/10.5194/bg-21-301-2024, https://doi.org/10.5194/bg-21-301-2024, 2024
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We downscaled two mid-century (~2075) ocean model projections to a high-resolution regional ocean model of the northwest North Atlantic (NA) shelf. In one projection, the NA shelf break current practically disappears; in the other it remains almost unchanged. This leads to a wide range of possible future shelf properties. More accurate projections of coastal circulation features would narrow the range of possible outcomes of biogeochemical projections for shelf regions.
Lennart Thomas Bach
Biogeosciences, 21, 261–277, https://doi.org/10.5194/bg-21-261-2024, https://doi.org/10.5194/bg-21-261-2024, 2024
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Ocean alkalinity enhancement (OAE) is a widely considered marine carbon dioxide removal method. OAE aims to accelerate chemical rock weathering, which is a natural process that slowly sequesters atmospheric carbon dioxide. This study shows that the addition of anthropogenic alkalinity via OAE can reduce the natural release of alkalinity and, therefore, reduce the efficiency of OAE for climate mitigation. However, the additionality problem could be mitigated via a variety of activities.
Tsuneo Ono, Daisuke Muraoka, Masahiro Hayashi, Makiko Yorifuji, Akihiro Dazai, Shigeyuki Omoto, Takehiro Tanaka, Tomohiro Okamura, Goh Onitsuka, Kenji Sudo, Masahiko Fujii, Ryuji Hamanoue, and Masahide Wakita
Biogeosciences, 21, 177–199, https://doi.org/10.5194/bg-21-177-2024, https://doi.org/10.5194/bg-21-177-2024, 2024
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We carried out parallel year-round observations of pH and related parameters in five stations around the Japan coast. It was found that short-term acidified situations with Omega_ar less than 1.5 occurred at four of five stations. Most of such short-term acidified events were related to the short-term low salinity event, and the extent of short-term pH drawdown at high freshwater input was positively correlated with the nutrient concentration of the main rivers that flow into the coastal area.
K. Mareike Paul, Martijn Hermans, Sami A. Jokinen, Inda Brinkmann, Helena L. Filipsson, and Tom Jilbert
Biogeosciences, 20, 5003–5028, https://doi.org/10.5194/bg-20-5003-2023, https://doi.org/10.5194/bg-20-5003-2023, 2023
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Seawater naturally contains trace metals such as Mo and U, which accumulate under low oxygen conditions on the seafloor. Previous studies have used sediment Mo and U contents as an archive of changing oxygen concentrations in coastal waters. Here we show that in fjords the use of Mo and U for this purpose may be impaired by additional processes. Our findings have implications for the reliable use of Mo and U to reconstruct oxygen changes in fjords.
Hannah Sharpe, Michel Gosselin, Catherine Lalande, Alexandre Normandeau, Jean-Carlos Montero-Serrano, Khouloud Baccara, Daniel Bourgault, Owen Sherwood, and Audrey Limoges
Biogeosciences, 20, 4981–5001, https://doi.org/10.5194/bg-20-4981-2023, https://doi.org/10.5194/bg-20-4981-2023, 2023
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We studied the impact of submarine canyon processes within the Pointe-des-Monts system on biogenic matter export and phytoplankton assemblages. Using data from three oceanographic moorings, we show that the canyon experienced two low-amplitude sediment remobilization events in 2020–2021 that led to enhanced particle fluxes in the deep-water column layer > 2.6 km offshore. Sinking phytoplankton fluxes were lower near the canyon compared to background values from the lower St. Lawrence Estuary.
Dewi Langlet, Florian Mermillod-Blondin, Noémie Deldicq, Arthur Bauville, Gwendoline Duong, Lara Konecny, Mylène Hugoni, Lionel Denis, and Vincent M. P. Bouchet
Biogeosciences, 20, 4875–4891, https://doi.org/10.5194/bg-20-4875-2023, https://doi.org/10.5194/bg-20-4875-2023, 2023
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Benthic foraminifera are single-cell marine organisms which can move in the sediment column. They were previously reported to horizontally and vertically transport sediment particles, yet the impact of their motion on the dissolved fluxes remains unknown. Using microprofiling, we show here that foraminiferal burrow formation increases the oxygen penetration depth in the sediment, leading to a change in the structure of the prokaryotic community.
Masahiko Fujii, Ryuji Hamanoue, Lawrence Patrick Cases Bernardo, Tsuneo Ono, Akihiro Dazai, Shigeyuki Oomoto, Masahide Wakita, and Takehiro Tanaka
Biogeosciences, 20, 4527–4549, https://doi.org/10.5194/bg-20-4527-2023, https://doi.org/10.5194/bg-20-4527-2023, 2023
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This is the first study of the current and future impacts of climate change on Pacific oyster farming in Japan. Future coastal warming and acidification may affect oyster larvae as a result of longer exposure to lower-pH waters. A prolonged spawning period may harm oyster processing by shortening the shipping period and reducing oyster quality. To minimize impacts on Pacific oyster farming, in addition to mitigation measures, local adaptation measures may be required.
Taketoshi Kodama, Atsushi Nishimoto, Ken-ichi Nakamura, Misato Nakae, Naoki Iguchi, Yosuke Igeta, and Yoichi Kogure
Biogeosciences, 20, 3667–3682, https://doi.org/10.5194/bg-20-3667-2023, https://doi.org/10.5194/bg-20-3667-2023, 2023
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Carbon and nitrogen are essential elements for organisms; their stable isotope ratios (13C : 12C, 15N : 14N) are useful tools for understanding turnover and movement in the ocean. In the Sea of Japan, the environment is rapidly being altered by human activities. The 13C : 12C of small organic particles is increased by active carbon fixation, and phytoplankton growth increases the values. The 15N : 14N variations suggest that nitrates from many sources contribute to organic production.
Aubin Thibault de Chanvalon, George W. Luther, Emily R. Estes, Jennifer Necker, Bradley M. Tebo, Jianzhong Su, and Wei-Jun Cai
Biogeosciences, 20, 3053–3071, https://doi.org/10.5194/bg-20-3053-2023, https://doi.org/10.5194/bg-20-3053-2023, 2023
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The intensity of the oceanic trap of CO2 released by anthropogenic activities depends on the alkalinity brought by continental weathering. Between ocean and continent, coastal water and estuaries can limit or favour the alkalinity transfer. This study investigate new interactions between dissolved metals and alkalinity in the oxygen-depleted zone of estuaries.
Cited articles
Alasdair H. N. and Allard A.-S.: Environmental degradation and transformation of organic chemicals, CRC Press, Boca Raton, 2008.
Amachi, S., Kamagata, Y., Kanagawa, T., and Muramatsu, Y.: Bacteria mediate methylation of iodine in marine and terrestrial environments, Appl. Environ. Microb., 67, 2718–2722, 2001.
Aneja, V. P.: Characterization of emissions of biogenic hydrogen sulfide, Tellus B, 38, 81–86, 1986.
Armstrong, W.: Aeration in higher plants, Adv. Botanical Res., 7, 225–332, 1979.
Bahlmann, E., Weinberg, I., Seifert, R., Tubbesing, C., and Michaelis, W.: A high volume sampling system for isotope determination of volatile halocarbons and hydrocarbons, Atmos. Meas. Tech., 4, 2073–2086, https://doi.org/10.5194/amt-4-2073-2011, 2011.
Baird, A. J., Beckwith, C. W., Waldron, S., and Waddington, J. M.: Ebullition of methane-containing gas bubbles from near-surface Sphagnum peat, Geophys. Res. Lett., 31, L21505, https://doi.org/10.1029/2004GL021157, 2004.
Baker, J. M., Reeves, C. E., Nightingale, P. D., Penkett, S. A., Gibb, S. W., and Hatton, A. D.: Biological production of methyl bromide in the coastal waters of the North Sea and open ocean of the northeast Atlantic, Mar. Chem., 64, 267–285, 1999.
Bange, H. W., Bartell, U. H., Rapsomanikis, S., and Andreae, M. O.: Methane in the Baltic and North Seas and a reassessment of the marine emissions of methane, Global Biogeochem. Cy., 8, 465–480, 1994.
Barbash, J. E. and Reinhard, M.: Reactivity of sulfur Nucleophiles toward halogenated organic compounds in natural waters, in Biogenic Sulfur in the Environment, edited by: Saltzman, E. and Cooper, W. J., American Chemical Society, Washington DC, 101–137, 1989.
Barnes, J., Ramesh, R., Purvaja, R., Rajkumar, A. N., Kumar, B. S., Krithika, K., Ravichandran, K., Uher, G., and Upstill-Goddard, R.: Tidal dynamics and rainfall control N2O and CH4 emissions from a pristine mangrove creek, Geophys. Res. Lett., 33, L15405, https://doi.org/10.1029/2006GL026829, 2006.
Barron, C., Duarte, C. M., Frankignoulle, M., and Borges, A. V.: Organic carbon metabolism and carbonate dynamics in a Mediterranean seagrass (Posidonia oceanica) meadow, Est. Coast., 29, 417–426, 2006.
Bartlett, K. B., Bartlett, D. S., Harriss, R. C., and Sebacher, D. I.: Methane emissions along a salt-marsh salinity gradient, Biogeochemistry, 4, 183–202, 1987.
Bates, T. S., Lamb, B. K., Guenther, A., Dignon, J., and Stoiber, R. E.: Sulfur emissions to the atmosphere from natural sources, J. Atmos. Chem., 14, 315–337, 1992.
Bill, M., Rhew, R. C., Weiss, R. F., and Goldstein, A. H.: Carbon isotope ratios of methyl bromide and methyl chloride emitted from a coastal salt marsh, Geophys. Res. Lett., 29, 1045, https://doi.org/10.1029/2001gl012946, 2002.
Billerbeck, M., Werner, U., Bosselmann, K., Walpersdorf, E., and Huettel, M.: Nutrient release from an exposed intertidal sand flat, Mar. Ecol. Prog. Ser., 316, 35–51, 2006a.
Billerbeck, M., Werner, U., Polerecky, L., Walpersdorf, E., deBeer, D., and Huettel, M.: Surficial and deep pore water circulation governs spatial and temporal scales of nutrient recycling in intertidal sand flat sediment, Mar. Ecol. Prog. Ser., 326, 61–76, 2006b.
Bodenbender, J., Wassmann, R. Papen, H., and Rennenberg, H.: Temporal and spatial variation of sulfur-gas-transfer between coastal marine sediments and the atmosphere, Atmos. Environ., 33, 3487–3502, 1999.
Borum, J., Sand-Jensen, K., Binzer, T., Pedersen, O., and Greve, T.: Oxygen Movement in Seagrasses, Seagrasses: Biology, ecology and conservation, Springer Netherlands, 255–270, 2006.
Brito, A., Newton, A., Tett, P., and Fernandes, T. F.: Sediment and water nutrients and microalgae in a coastal shallow lagoon, Ria Formosa (Portugal): Implications for the Water Framework Directive, J. Environmen. Monit., 12, 318–328, 2010.
Brotas, V., Amorimferreira, A., Vale, C., and Catarino, F.: Oxygen profiles in intertidal sediments of Ria Formosa (S Portugal), Hydrobiologia, 207, 123–129, 1990.
Cabaço, S., Machás, R., Vieira, V., and Santos, R.: Impacts of urban wastewater discharge on seagrass meadows (Zostera noltii), Est. Coast. Shelf Sci., 78, 1–13, 2008.
Chanton, J. P., Martens, C. S., and Kelley, C. A.: Gas-transport from methane-saturated, tidal fresh-water and wetland sediments, Limnol. Oceanogr., 34, 807–819, 1989.
Charpy-Roubaud, C. and Sournia, A.: The comparative estimation of phytoplanktonic microphytobenthic and macrophytobenthic primary production in the oceans, Mar. Microb. Food Web., 4, 31–58, 1990.
Christof, O., Seifert, R., and Michaelis, W.: Volatile halogenated organic compounds in European estuaries, Biogeochemistry, 59, 143–160, 2002.
Cook, P. L. M., Wenzhöfer, F., Glud, R. N., Jansen, F., and Huettel, M.: Benthic solute exchange and carbon mineralization in two shallow subtidal sandy sediments: Effect of advective pore-water exchange, Limnol. Oceanogr., 52, 1943–1963, 2007.
Cooper, D. J., Demello, W. Z., Cooper, W. J., Zika, R. G., Saltzman, E. S., Prospero, J. M., and Savoie, D. L.: Short-term variability in biogenic sulfur emissions from a Florida Spartina alterniflora marsh, Atmos. Environ., 21, 7–12, 1987a.
Cooper, W. J., Cooper, D. J., Saltzman, E. S., Demello, W. Z., Savoie, D. L., Zika, R. G., and Prospero, J. M.: Emissions of biogenic sulfur-compounds from several wetland soils in Florida, Atmos. Environ., 21, 1491–1495, 1987b.
Dacey, J. W. H., King, G. M., and Wakeham, S. G.: Factors controlling emission of dimethyldulfide from salt marshes, Nature, 330, 643–645, 1987.
Deborde, F., Anschutz, P., Guèrin, F, Porier, D, Marty, D.,Boucher, G., Thouzeau, G., Canto, M., and Abril, G.: Methane sources, sinks and fluxes in a temperate tidal lagoon: The Arcachon Lagoon (SW France), Estuarine, Coast. Shelf Sci., 89, 256–266, 2010.
de la Paz, M., Gomez-Parra, A., and Forja, J.: Variability of the partial pressure of CO2 on a daily-to-seasonal time scale in a shallow coastal system affected by intensive aquaculture activities (Bay of Cadiz, SW Iberian Peninsula), Mar. Chem., 110, 195–204, 2008.
Delaune, R. D., Smith, C. J., and Patrick, W. H.: Methane release from gulf-coast wetlands, Tellus B, 35, 8–15, 1983.
Demello, W. Z., Cooper, D. J., Cooper, W. J., Saltzman, E. S., Zika, R. G., Savoie, D. L., and Prospero, J. M.: Spatial and diel variability in the emissions of some biogenic sulfur-compounds from a Florida Spartina-alterniflora coastal zone, Atmos. Environ., 21, 987–990, 1987.
Ding, W. X., Cai, Z. C., and Tsuruta, H.: Methane concentration and emission as affected by methane transport capacity of plants in freshwater marsh, Water Air Soil Pollut., 158, 99–111, 2004.
Duarte, C. M., Middelburg, J. J., and Caraco, N.: Major role of marine vegetation on the oceanic carbon cycle, Biogeosciences, 2, 1–8, https://doi.org/10.5194/bg-2-1-2005, 2005.
Duarte, C. M., Marba, N., Gacia, E., Fourqurean, J. W., Beggins, J., Barron, C., and Apostolaki, E. T.: Seagrass community metabolism: assessing the carbon sink capacity of seagrass meadows. Global. Biogeochem. Cy., 24, GB4032, https://doi.org/10.1029/2010GB003793, 2010.
Ferron, S., Alonso-Perez, S. F., Ortega, T., and Forja, J. M.: Benthic respiration on the north- eastern shelf of the Gulf of Cadiz (SW Iberian Peninsula), Mar. Ecol. Prog. Ser., 392, 69–80, 2009.
Gao, F. and Yates, S. R.: Laboratory study of closed and dynamic flux chambers: Experimental results and implications for field application, J. Geophys. Res.-Atmos., 103, 26115–26125, 1998.
Gao, F., Yates, S. R., Yates, M. V., Gan, J. Y., and Ernst, F. F.: Design, fabrication, and application of a dynamic chamber for measuring gas emissions from soil, Environ. Sci. Technol., 31, 148–153, 1997.
Glaser, P. H., Chanton, J. P., Morin, P., Rosenberry, D. mO., Siegel, D. I., Ruud, O., Chasar, L. I., and Reeve, A. S.: Surface deformations as indicators of deep ebullition fluxes in a large northern peatland, Global Biogeochem. Cy., 18, GB1003, https://doi.org/10.1029/2003GB002069, 2004.
Grunwald, M., Dellwig, O., Beck, M., Dippner, J. W., Freund, J. A., Kohlmeier, C., Schnetger, B., and Brumsack, H.-J.: Methane in the southern North Sea: sources, spatial distribution and budgets. Estuarine, Coast. Shelf Sci., 81, 445–456, 2009.
Gschwend, P. M., Macfarlane, J. K., and Newman, K. A.: Volatile halogenated organic-compounds released to seawater from temperate marine macroalgae, Science, 227, 1033–1035, 1985.
Guimarães, H., Cunha, A.H., Nzinga, R., and Marques, J.: The distribution of seagrass (Zostera noltii Hornem.) in the Ria Formosa lagoon system and the implications of clam farming on its conservation, J. Nat. Conserv., 20, 30–40, 2012.
Hemminga, M. and Duarte, C. M.: Seagrass ecology, Cambridge, 2000.
Heyer, J. and Berger, U.: Methane emission from the coastal area in the southern Baltic Sea, Estuar. Coast. Shelf Sci., 51, 13–30, 2000.
Hubas, C., Davoult, D., Cariou, T., and Artigas, L. F.: Factors controlling benthic metabolism during low tide along a granulometric gradient in an intertidal bay (Roscoff Aber Bay, France), Mar. Ecol. Prog. Ser., 316, 53–68, 2006.
Huettel, M. and Rusch, A.: Transport and degradation of phytoplankton in permeable sediment, Limnol. Oceanogr., 45, 534–549, 2000.
Huettel, M., Ziebis, W., and Forster, S.: Flow-induced uptake of particulate matter in permeable sediments, Limnol. Oceanogr., 41, 309–322, 1996.
Jansen, S., Walpersdorf, E., Werner, U., Billerbeck, M., Böttcher, M. E., and de Beer, D.: Functioning of intertidal flats inferred from temporal and spatial dynamics of O2, H2S and pH in their surface sediment, Oc. Dynam., 59, 317–332, 2009.
Jonkers, H. M., van Bergeijk, S. A., and van Gemerden, H.: Microbial production and consumption of dimethyl sulfide (DMS) in a sea grass (Zostera noltii)-dominated marine intertidal sediment ecosystem (Bassin d'Arcachon, France), Fems Microbiol. Ecol., 31, 163–172, 2000.
Jorgensen, B. B. and Okholmhansen, B.: Emissions of biogenic sulfur gases from a danish estuary, Atmos. Environ., 19, 1737–1749, 1985.
Khalil, M. A. K. and Rasmussen, R. A.: Global sources, lifetimes and mass balances of carbonyl sulfide (OCS) and cabon-disulfide (CS2) in the earths atmosphere, Atmos. Environ., 18, 1805–1813, 1984.
Kim, K. H. and Kim, D.: Seasonal and spatial variability of sediment oxygen fluxes in the Beobsan intertidal flat of Taean Bay, mid-western Korean Peninsula, Geosci. J., 11, 323–329, 2007.
Kim, K. H. and Lindberg, S. E.: Design and initial tests of a dynamic enclosure chamber for measurements of vapor-phase mercury fluxes over soils, Water Air Soil Pollut., 80, 1059–1068, 1995.
Koch, E., Ackerman, J., Verduin, J., and Keulen, M.: Fluid Dynamics in Seagrass Ecology–-from Molecules to Ecosystems, Seagrasses: Biology, Ecol. Conservat., Springer Netherlands, 193–225, 2006.
Koch, E. W.: Preliminary evidence on the interdependent effect of currents and porewater geochemistry on Thalassia testudinum Banks ex Konig seedlings, Aquat. Bot., 63, 95–102, 1999.
Laanbroek, H. J.: Methane emission from natural wetlands: interplay between emergent macrophytes and soil microbial processes, A mini-review, Ann. Bot., 105, 141–153, 2010.
Larkum, A. W. D., Roberts, G., Kuo, J. S., and Strother, S.: Gaseous movement in seagrasses. In: Larkum AWD, McComb AJ and Shepherd SA, Biology of Seagrasses, Elsevier, Amsterdam, 686-722, 1989.
Larned, S.T.: Effects of the invasive, nonindigenous seagrass Zostera japonica on nutrient fluxes between the water column and benthos in a NE Pacific estuary, Mar. Ecol. Prog. Ser., 254, 69–80, 2003.
Leck, C. and Rodhe, H.: Emissions of marine biogenic sulfur to the atmosphere of Northern Europe, J. Atmos. Chem., 12, 63–86, 1991.
Leuschner, C., Landwehr, S., and Mehlig, U.: Limitation of carbon assimilation of intertidal Zostera noltii and Z-marina by desiccation at low tide, Aquat. Bot., 62, 171–176, 1998.
Leuschner, C. and Rees, U.: CO2 gas-exchange of 2 intertidal seagrass species, Zostera-marina L and Zostera noltii Hornem during emersion, Aquat. Bot., 5, 53–62, 1993.
Lopez, N. I. and Duarte, C. M.: Dimethyl sulfoxide (DMSO) reduction potential in mediterranean seagrass (Posidonia oceanica) sediments, J. Sea Res., 51, 11–20, 2004.
Manley, S. L., Wang, N.-Y., Walser, M. L., and Cicerone, R. J.: Coastal salt marshes as global methyl halide sources from determinations of intrinsic production by marsh plants, Global Biogeochem. Cy., 20, GB3015, https://doi.org/10.1029/2005GB002578, 2006.
Martens, C. S. and Berner, R. A.: Methane production in interstitial waters of sulfate-depleted marine sediments, Science 185, 1167–1169, 1974.
Mateo, M., Cebrián, J., Dunton, K., and Mutchler, T.: Carbon Flux in Seagrass Ecosystems, Seagrasses: Biology, Ecology and Conservation, Springer Netherlands, 159–192, 2006.
Meixner, F. X., Fickinger, T., Marufu, L., Serca, D., Nathaus, F. J., Makina, E., Mukurumbira, L., and Andreae, M. O.: Preliminary results on nitric oxide emission from a southern African savanna ecosystem, Nutr. Cy. Agroecosys., 48, 123–138, 1997.
Meysman, F. J. R., Galaktionov, E. S., Gribsholt, B., and Middelburg, J. J.: Bioirrigation in permeable sediments: Advective pore-water transport induced by burrow ventilation, Limnol. Oceanogr., 51, 142–156, 2006.
Middelburg, J. J., Nieuwenhuize, J., Iversen, N., Hogh, N., De Wilde, H., Helder, W., Seifert, R., and Christof, O.: Methane distribution in European tidal estuaries, Biogeochemistry, 59, 95–119, 2002.
Migne, A., Davoult, D., Spilmont, N., Menu, D., Boucher, G., Gattuso, J. P., and Rybarczyk, H.: A closed-chamber CO2-flux method for estimating intertidal primary production and respiration under emersed conditions, Mar. Biol., 140, 865–869, 2002.
Migne, A., Spilmont, N., and Davoult, D.: In situ measurements of benthic primary production during emersion: seasonal variations and annual production in the Bay of Somme (eastern English Channel, France), Continent. Shelf Res., 24, 1437–1449, 2004.
Miller, L. G., Kalin, R. M., McCauley, S. E., Hamilton, D. J. T., Harper, G. B., Millet, D. B., Oremland, R. S., and Goldstein A. H.: Large carbon isotope fractionation associated with oxidation of methyl halides by methylotrophic bacteria, Proc. Natl. Acad. Sci. USA, 98, 5833–5837, 2001.
Moore, R. M., Tokarczyk, R., Tait, V. K., Poulin, M., and Geen, C.: Marine phytoplankton as a natural source of volatile organohalogens, in: Grimvall, A. and Leer, E. B., Naturally-Produced Organohalogens, Springer Netherlands, 283–294, 1995.
Newton, A., Icely, J. D., Falcao, M., Nobre, A., Nunes, J. P., Ferreira, J. G., and Vale, C.: Evaluation of eutrophication in the Ria Formosa coastal lagoon, Portugal, Continent. Shelf Res., 23, 1945–1961, 2003.
Nicholson, G. J., Longmore, A. R., and Berelson, W. M.: Nutrient fluxes measured by two types of benthic chamber, Mar. Freshwater Res., 50, 567–572, 1999.
Nielsen, P.: Tidal dynamics of the water-table in beaches, Water Resour. Res., 26, 2127–2134, 1990.
Oremland, R. S.: Methane production in shallow-water, tropical marine sediments, Appl. Microbiol., 30, 602–608, 1975.
Oremland, R. S., Marsh, L. M., and Polcin, S.: Methane production and simultaneous sulfate reduction in anoxic, salt-marsh sediments, Nature, 296, 143–145, 1982.
Ouisse, V., Migne, A., and Davoult, D.: Community-level carbon flux variability over a tidal cycle in Zostera marina and Z-noltii beds, Mar. Ecol. Prog. Ser., 437, 79–87, 2011.
Pape, L., Ammann, C., Nyfeler-Brunner, A., Spirig, C., Hens, K., and Meixner, F. X.: An automated dynamic chamber system for surface exchange measurement of non-reactive and reactive trace gases of grassland ecosystems, Biogeosciences, 6, 405–429, https://doi.org/10.5194/bg-6-405-2009, 2009.
Pérez-Llorens, J. L. and Niell, F. X.: Photosynthesis in air: comparative responses to different temperatures of two morphotypes of Zostera noltii Hornem. from Palmones River estuary (southern Spain), Verh. Internat. Verein, Limnol. Oceanogr., 25, 2265–2269, 1994.
Precht, E. and Huettel, M.: Advective pore-water exchange driven by surface gravity waves and its ecological implications, Limnol. Oceanogr., 48, 1674–1684, 2003.
Precht, E. and Huettel, M.: Rapid wave-driven advective pore water exchange in a permeable coastal sediment, J. Sea Res., 51, 93–107, 2004.
Rhew, R. C., Miller, B. R., and Weiss, R. F.: Natural methyl bromide and methyl chloride emissions from coastal salt marshes, Nature, 403, 292–295, 2000.
Riedl, R. J., Machan, R., and Huang, N.: Subtidal pump – mechanisms of interstitial water exchange by wave action, Mar. Biol., 13, 210–221, 1972.
Santos, R., Silva, J., Alexandre, A., Navarro, N., Barron, C., and Duarte, C. M.: Ecosystem metabolism and carbon fluxes of a tidally-dominated coastal lagoon, Estuaries, 27, 977–985, 2004.
Sebacher, D. I., Harriss, R. C., and Bartlett, K. B.: Methane emissions to the atmosphere through aquatic plants, J. Environ. Qual., 14, 40–46, 1985.
Silva, J., Feijoo, P., and Santos, R.: Underwater measurements of carbon dioxide evolution in marine plant communities: A new method, Estuar. Coast. Shelf Sci., 78, 827–830, 2008.
Silva, J., Santos, R., Calleja, M. L., and Duarte, C. M.: Submerged versus air-exposed intertidal macrophyte productivity: from physiological to community-level assessments, J. Experimen. Mar. Biol. Ecol., 317, 87–95, 2005.
Spilmont, N., Migne, A., Lefebvre, A., Artigas, L. F., Rauch, M., and Davoult, D.: Temporal variability of intertidal benthic metabolism under emersed conditions in an exposed sandy beach (Wimereux, eastern English Channel, France), J. Sea Res., 53, 161–167, 2005.
Tengberg, A., Stahl H., G. Gust, G., V. Mueller, V., U. Arning, U., Andersson, H., and Hall, P. A. J.: Intercalibration of benthic flux chambers I. Accuracy of flux measurements and influence of chamber hydrodynamics, Prog. Oceanogr., 60, 1–28, 2004.
Thibodeaux, L. J. and Boyle, J. D.: Bedform-generated convective-transport in bottom sediment, Nature, 325, 341–343, 1987.
Turner, S. M., Malin, G., and Liss, P. S.: Dimethyl Sulfide and (Dimethylsulfonio) propionate in European Coastal and Shelf Waters, Biogenic Sulfur in the Environment, Am. Chem. Soc., 183–200, 1989.
Urhahn, T.: Leichtflüchtige ECD-aktive Verbindungen in der marinen Grundschicht (MBL) des Atlantischen Ozeans: Vorkommen, Quellen und Verteilung, Department of Analytical Chemistry and Environmental Chemistry, University of Ulm, Ulm, Germany, 2003.
Valtanen, A., Solloch, S., Hartikainen, H., and Michaelis, W.: Emissions of volatile halogenated compounds from a meadow in a coastal area of the Baltic Sea, Bor. Environ. Res., 14, 915–931, 2009.
Van der Nat, F. J. and Middelburg, J. J.: Methane emission from tidal freshwater marshes, Biogeochemistry, 49, 103–121, 2000.
Werner, U., Billerbeck, M., Polerecky, L., Franke, U., Huettel, M., van Beusekom, J. E. E., and de Beer, D.: Spatial and temporal patterns of mineralization rates and oxygen distribution in a permeable intertidal sand flat (Sylt, Germany), Limnol. Oceanogr., 51, 2549–2563, 2006.
Wuebbles, D. J. and Hayhoe, K.: Atmospheric methane and global change, Earth-Sci. Rev., 57, 177–210, 2002.
Yamamoto, A., Hirota, M., Suzuki, S., Oe, Y., Zhang, P., and Mariko, S.: Effects of tidal fluctuations on CO2 and CH4 fluxes in the littoral zone of a brackish-water lake, Limnology, 10, 228–237, 2009.
Zhang, H., Lindberg, S. E., Barnett, M. O., Vette, A. F., and Gustin, M. S.: Dynamic flux chamber measurement of gaseous mercury emission fluxes over soils, Part 1: simulation of gaseous mercury emissions from soils using a two-resistance exchange interface model, Atmos. Environ., 36, 835–846, 2002.
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