Research article 01 Jul 2016
Research article | 01 Jul 2016
Identification and analysis of low-molecular-weight dissolved organic carbon in subglacial basal ice ecosystems by ion chromatography
Emily C. O'Donnell et al.
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Jemma Louise Wadham, Jonathan Hawkings, Jon Telling, Dave Chandler, Jon Alcock, Emily O'Donnell, Preeti Kaur, Elizabeth Bagshaw, Martyn Tranter, Andre Tedstone, and Peter Nienow
Biogeosciences, 13, 6339–6352, https://doi.org/10.5194/bg-13-6339-2016, https://doi.org/10.5194/bg-13-6339-2016, 2016
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Fjord and continental shelf environments in the polar regions are host to some of the planet's most productive ecosystems and support economically important fisheries. A key limiting nutrient for many of these marine phytoplankton is nitrogen. Here we evaluate the potential for a melting Greenland Ice Sheet to supply nitrogen to Arctic coastal ecosystems. We show nitrogen fluxes of a similar order of magnitude to one large Arctic river but yields that are double those typical of Arctic rivers.
E. C. Lawson, J. L. Wadham, M. Tranter, M. Stibal, G. P. Lis, C. E. H. Butler, J. Laybourn-Parry, P. Nienow, D. Chandler, and P. Dewsbury
Biogeosciences, 11, 4015–4028, https://doi.org/10.5194/bg-11-4015-2014, https://doi.org/10.5194/bg-11-4015-2014, 2014
Miranda J. Nicholes, Christopher Williamson, Martyn Tranter, Alexandra Holland, Marian Yallop, and Alexandre Anesio
Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-227, https://doi.org/10.5194/bg-2020-227, 2020
Publication in BG not foreseen
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This incubation experiment assessed the role of solar radiation and heterotrophic bacteria in the degradation of organic carbon in surface ice of the Greenland Ice Sheet. Although ultraviolet radiation was found to alter carbon composition, heterotrophic degradation caused the greatest changes to both carbon composition and quantity. Both processes are likely interlinked within the surface ice and are fundamental to controlling the composition of carbon exported to downstream environments.
Moya L. Macdonald, Jemma L. Wadham, Dickon Young, Chris R. Lunder, Ove Hermansen, Guillaume Lamarche-Gagnon, and Simon O'Doherty
Atmos. Chem. Phys., 20, 7243–7258, https://doi.org/10.5194/acp-20-7243-2020, https://doi.org/10.5194/acp-20-7243-2020, 2020
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Climate change has caused glaciers in the Arctic to shrink, uncovering new soils. We used field measurements to study the exchange of a group of gases involved in ozone destruction, called halocarbons, between these new soils and the atmosphere. We found that mats of cyanobacteria, early colonisers of soils, are linked to a larger-than-expected exchange of halocarbons with the atmosphere. We also found that gases which are commonly thought to be marine in origin were released from these soils.
Andrew J. Tedstone, Joseph M. Cook, Christopher J. Williamson, Stefan Hofer, Jenine McCutcheon, Tristram Irvine-Fynn, Thomas Gribbin, and Martyn Tranter
The Cryosphere, 14, 521–538, https://doi.org/10.5194/tc-14-521-2020, https://doi.org/10.5194/tc-14-521-2020, 2020
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Albedo describes how much light that hits a surface is reflected without being absorbed. Low-albedo ice surfaces melt more quickly. There are large differences in the albedo of bare-ice areas of the Greenland Ice Sheet. They are caused both by dark glacier algae and by the condition of the underlying ice. Changes occur over centimetres to metres, so satellites do not always detect real albedo changes. Estimates of melt made using satellite measurements therefore tend to be underestimates.
Joseph M. Cook, Andrew J. Tedstone, Christopher Williamson, Jenine McCutcheon, Andrew J. Hodson, Archana Dayal, McKenzie Skiles, Stefan Hofer, Robert Bryant, Owen McAree, Andrew McGonigle, Jonathan Ryan, Alexandre M. Anesio, Tristram D. L. Irvine-Fynn, Alun Hubbard, Edward Hanna, Mark Flanner, Sathish Mayanna, Liane G. Benning, Dirk van As, Marian Yallop, James B. McQuaid, Thomas Gribbin, and Martyn Tranter
The Cryosphere, 14, 309–330, https://doi.org/10.5194/tc-14-309-2020, https://doi.org/10.5194/tc-14-309-2020, 2020
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Melting of the Greenland Ice Sheet (GrIS) is a major source of uncertainty for sea level rise projections. Ice-darkening due to the growth of algae has been recognized as a potential accelerator of melting. This paper measures and models the algae-driven ice melting and maps the algae over the ice sheet for the first time. We estimate that as much as 13 % total runoff from the south-western GrIS can be attributed to these algae, showing that they must be included in future mass balance models.
Alexandra T. Holland, Christopher J. Williamson, Fotis Sgouridis, Andrew J. Tedstone, Jenine McCutcheon, Joseph M. Cook, Ewa Poniecka, Marian L. Yallop, Martyn Tranter, Alexandre M. Anesio, and The Black & Bloom Group
Biogeosciences, 16, 3283–3296, https://doi.org/10.5194/bg-16-3283-2019, https://doi.org/10.5194/bg-16-3283-2019, 2019
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This paper provides a preliminary data set for dissolved nutrient abundance in the Dark Zone of the Greenland Ice Sheet. This 15-year marked darkening has since been attributed to glacier algae blooms, yet has not been accounted for in current melt rate models. We conclude that the dissolved organic phase dominates surface ice environments and that factors other than macronutrient limitation control the extent and magnitude of the glacier algae blooms.
Joseph M. Cook, Andrew J. Hodson, Alex S. Gardner, Mark Flanner, Andrew J. Tedstone, Christopher Williamson, Tristram D. L. Irvine-Fynn, Johan Nilsson, Robert Bryant, and Martyn Tranter
The Cryosphere, 11, 2611–2632, https://doi.org/10.5194/tc-11-2611-2017, https://doi.org/10.5194/tc-11-2611-2017, 2017
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Biological growth darkens snow and ice, causing it to melt faster. This is often referred to as
bioalbedo. Quantifying bioalbedo has not been achieved because of difficulties in isolating the biological contribution from the optical properties of ice and snow, and from inorganic impurities in field studies. In this paper, we provide a physical model that enables bioalbedo to be quantified from first principles and we use it to guide future field studies.
Andrew J. Tedstone, Jonathan L. Bamber, Joseph M. Cook, Christopher J. Williamson, Xavier Fettweis, Andrew J. Hodson, and Martyn Tranter
The Cryosphere, 11, 2491–2506, https://doi.org/10.5194/tc-11-2491-2017, https://doi.org/10.5194/tc-11-2491-2017, 2017
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The bare ice albedo of the south-west Greenland ice sheet varies dramatically between years. The reasons are unclear but likely involve darkening by inorganic particulates, cryoconite and ice algae. We use satellite imagery to examine dark ice dynamics and climate model outputs to find likely climatological controls. Outcropping particulates can explain the spatial extent of dark ice, but the darkening itself is likely due to ice algae growth controlled by meltwater and light availability.
Amy E. Pickard, Kate V. Heal, Andrew R. McLeod, and Kerry J. Dinsmore
Biogeosciences, 14, 1793–1809, https://doi.org/10.5194/bg-14-1793-2017, https://doi.org/10.5194/bg-14-1793-2017, 2017
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Peatland catchments export significant volumes of photoreactive carbon to aquatic systems, particularly headwater streams. Delivery of photoreactive material is subject to seasonal variation, and is also influenced by the timing and magnitude of rainfall events. We suggest that photoprocessing of peatland derived carbon may contribute to carbon dioxide emissions from aquatic systems, although considerable uncertainty remains as to how much material is processed
in situwithin these systems.
Sophie L. Nixon, Jon P. Telling, Jemma L. Wadham, and Charles S. Cockell
Biogeosciences, 14, 1445–1455, https://doi.org/10.5194/bg-14-1445-2017, https://doi.org/10.5194/bg-14-1445-2017, 2017
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Despite their permanently cold and dark characteristics, subglacial environments (glacier ice–sediment interface) are known to harbour active microbial communities. However, the role of microbial iron cycling in these environments is poorly understood. Here we show that subglacial sediments harbour active iron-reducing microorganisms, and they appear to be cold-adapted. These results may have important implications for global biogeochemical iron cycling and export to marine ecosystems.
Jemma Louise Wadham, Jonathan Hawkings, Jon Telling, Dave Chandler, Jon Alcock, Emily O'Donnell, Preeti Kaur, Elizabeth Bagshaw, Martyn Tranter, Andre Tedstone, and Peter Nienow
Biogeosciences, 13, 6339–6352, https://doi.org/10.5194/bg-13-6339-2016, https://doi.org/10.5194/bg-13-6339-2016, 2016
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Fjord and continental shelf environments in the polar regions are host to some of the planet's most productive ecosystems and support economically important fisheries. A key limiting nutrient for many of these marine phytoplankton is nitrogen. Here we evaluate the potential for a melting Greenland Ice Sheet to supply nitrogen to Arctic coastal ecosystems. We show nitrogen fluxes of a similar order of magnitude to one large Arctic river but yields that are double those typical of Arctic rivers.
James A. Bradley, Sandra Arndt, Marie Šabacká, Liane G. Benning, Gary L. Barker, Joshua J. Blacker, Marian L. Yallop, Katherine E. Wright, Christopher M. Bellas, Jonathan Telling, Martyn Tranter, and Alexandre M. Anesio
Biogeosciences, 13, 5677–5696, https://doi.org/10.5194/bg-13-5677-2016, https://doi.org/10.5194/bg-13-5677-2016, 2016
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Soil development following glacier retreat was characterized using a novel integrated field, laboratory and modelling approach in Svalbard. We found community shifts in bacteria, which were responsible for driving cycles in carbon and nutrients. Allochthonous inputs were also important in sustaining bacterial production. This study shows how an integrated model–data approach can improve understanding and obtain a more holistic picture of soil development in an increasingly ice-free future world.
Robert Raiswell, Jon R. Hawkings, Liane G. Benning, Alex R. Baker, Ros Death, Samuel Albani, Natalie Mahowald, Michael D. Krom, Simon W. Poulton, Jemma Wadham, and Martyn Tranter
Biogeosciences, 13, 3887–3900, https://doi.org/10.5194/bg-13-3887-2016, https://doi.org/10.5194/bg-13-3887-2016, 2016
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Iron is an essential nutrient for plankton growth. One important source of iron is wind-blown dust. The polar oceans are remote from dust sources but melting icebergs supply sediment that contains iron which is potentially available to plankton. We show that iceberg sediments contain more potentially bioavailable iron than wind-blown dust. Iceberg sources will become increasingly important with climate change and increased plankton growth can remove more carbon dioxide from the atmosphere.
D. M. Chandler, J. D. Alcock, J. L. Wadham, S. L. Mackie, and J. Telling
The Cryosphere, 9, 487–504, https://doi.org/10.5194/tc-9-487-2015, https://doi.org/10.5194/tc-9-487-2015, 2015
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The Greenland Ice Sheet surface shows a diverse range of characteristics, and hosts active microbial communities in debris-rich ''cryoconite holes'' (CHs). Field and satellite data for a complete melt season revealed significant links between surface albedo, CH coverage and biological activity. This suggests satellites may be able to monitor CH biological processes. Nevertheless, caution is needed when extrapolating point measurements of biological processes to larger space and time scales.
E. C. Lawson, J. L. Wadham, M. Tranter, M. Stibal, G. P. Lis, C. E. H. Butler, J. Laybourn-Parry, P. Nienow, D. Chandler, and P. Dewsbury
Biogeosciences, 11, 4015–4028, https://doi.org/10.5194/bg-11-4015-2014, https://doi.org/10.5194/bg-11-4015-2014, 2014
R. Death, J. L. Wadham, F. Monteiro, A. M. Le Brocq, M. Tranter, A. Ridgwell, S. Dutkiewicz, and R. Raiswell
Biogeosciences, 11, 2635–2643, https://doi.org/10.5194/bg-11-2635-2014, https://doi.org/10.5194/bg-11-2635-2014, 2014
N. J. Cullen, P. Sirguey, T. Mölg, G. Kaser, M. Winkler, and S. J. Fitzsimons
The Cryosphere, 7, 419–431, https://doi.org/10.5194/tc-7-419-2013, https://doi.org/10.5194/tc-7-419-2013, 2013
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Mark A. Stevenson, Suzanne McGowan, Emma J. Pearson, George E. A. Swann, Melanie J. Leng, Vivienne J. Jones, Joseph J. Bailey, Xianyu Huang, and Erika Whiteford
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We link detailed stable isotope and biomarker analyses from the catchments of three Arctic upland lakes on Disko Island (West Greenland) to a recent dated sediment core to understand how carbon cycling has changed over the past ~500 years. We find that the carbon deposited in sediments in these upland lakes is predominately sourced from in-lake production due to the catchment's limited terrestrial vegetation and elevation and that recent increases in algal production link with climate change.
Nadine T. Smit, Laura Villanueva, Darci Rush, Fausto Grassa, Caitlyn R. Witkowski, Mira Holzheimer, Adriaan J. Minnaard, Jaap S. Sinninghe Damsté, and Stefan Schouten
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Soils from an everlasting fire (gas seep) in Sicily, Italy, reveal high relative abundances of novel uncultivated mycobacteria and unique 13C-depleted mycocerosic acids (multi-methyl branched fatty acids) close to the main gas seep. Our results imply that mycocerosic acids in combination with their depleted δ13C values offer a new biomarker tool to study the role of soil mycobacteria as hydrocarbon consumers in the modern and past global carbon cycle.
Marcus P. S. Badger
Biogeosciences, 18, 1149–1160, https://doi.org/10.5194/bg-18-1149-2021, https://doi.org/10.5194/bg-18-1149-2021, 2021
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Reconstructing ancient atmospheric CO2 is an important aim of palaeoclimate science in order to understand the Earth's climate system. One method, the alkenone proxy based on molecular fossils of coccolithophores, has been recently shown to be ineffective at low-to-moderate CO2 levels. In this paper I show that this is likely due to changes in the biogeochemistry of the coccolithophores when there is low carbon availability, but for much of the Cenozoic the alkenone proxy should have utility.
Jonathan H. Raberg, David J. Harning, Sarah E. Crump, Greg de Wet, Aria Blumm, Sebastian Kopf, Áslaug Geirsdóttir, Gifford H. Miller, and Julio Sepúlveda
Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-16, https://doi.org/10.5194/bg-2021-16, 2021
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BrGDGT lipids are a proxy for temperature in lake sediments, but other parameters like pH can influence them and seasonality can affect the temperatures they record. We find a warm-season bias at 43 new high-latitude sites. We also present a new method that deconvolves the effects of temperature, pH, and conductivity and generate global calibrations for these variables. Our study provides new paleoclimate tools, insight into brGDGTs at the biochemical level, and a new method for future study.
Loes G. J. van Bree, Francien Peterse, Allix J. Baxter, Wannes De Crop, Sigrid van Grinsven, Laura Villanueva, Dirk Verschuren, and Jaap S. Sinninghe Damsté
Biogeosciences, 17, 5443–5463, https://doi.org/10.5194/bg-17-5443-2020, https://doi.org/10.5194/bg-17-5443-2020, 2020
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Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are used as a paleothermometer based on their temperature dependence in global soils, but aquatic production complicates their use in lakes. BrGDGTs in the water column of Lake Chala, East Africa, respond to oxygen conditions and mixing. Changes in their signal can be linked to bacterial community composition rather than membrane adaptation to changing conditions. Their integrated signal in the sediment reflects mean air temperature.
Ben J. Fisher, Johan C. Faust, Oliver W. Moore, Caroline L. Peacock, and Christian März
Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-399, https://doi.org/10.5194/bg-2020-399, 2020
Revised manuscript accepted for BG
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One way to remove carbon dioxide from the atmosphere is to store it in the seafloor, minerals can act to preserve seafloor carbon by preventing microbes from breaking it down. We can use a chemical method to tell us how much of this seafloor carbon is protected by iron minerals (how much will be preserved). However, different scientists use different versions of this method which makes results hard to compare. Here we make an assessment of these various methods to determine the best approach.
Charlotte L. Spencer-Jones, Erin L. McClymont, Nicole J. Bale, Ellen C. Hopmans, Stefan Schouten, Juliane Müller, E. Povl Abrahamsen, Claire Allen, Torsten Bickert, Claus-Dieter Hillenbrand, Elaine Mawbey, Victoria Peck, Aleksandra Svalova, and James A. Smith
Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-333, https://doi.org/10.5194/bg-2020-333, 2020
Revised manuscript accepted for BG
Alexandra N. Loginova, Andrew W. Dale, Frédéric A. C. Le Moigne, Sören Thomsen, Stefan Sommer, David Clemens, Klaus Wallmann, and Anja Engel
Biogeosciences, 17, 4663–4679, https://doi.org/10.5194/bg-17-4663-2020, https://doi.org/10.5194/bg-17-4663-2020, 2020
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We measured dissolved organic carbon (DOC), nitrogen (DON) and matter (DOM) optical properties in pore waters and near-bottom waters of the eastern tropical South Pacific off Peru. The difference between diffusion-driven and net fluxes of DOC and DON and qualitative changes in DOM optical properties suggested active microbial utilisation of the released DOM at the sediment–water interface. Our results suggest that the sediment release of DOM contributes to microbial processes in the area.
Gerard J. M. Versteegh, Alexander J. P. Houben, and Karin A. F. Zonneveld
Biogeosciences, 17, 3545–3561, https://doi.org/10.5194/bg-17-3545-2020, https://doi.org/10.5194/bg-17-3545-2020, 2020
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Anoxic sediments mostly contain much more organic matter than oxic ones, and therefore organic matter in anoxic settings is often considered to be preserved better than in oxic settings. However, through the analysis of the same fossil dinoflagellate cyst species from both oxic and anoxic settings, we show that at a molecular level the preservation in the oxic sediments may be better since in the anoxic setting the cyst macromolecule has been altered by postdepositional modification.
Alec W. Armstrong, Leanne Powers, and Michael Gonsior
Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-207, https://doi.org/10.5194/bg-2020-207, 2020
Revised manuscript accepted for BG
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Living things decay into organic matter, and this material can dissolve into water like tea brewing from tea leaves. Just as dark tea gets its color from absorbing light, this material can absorb light, which can cause chemical reactions that change its nature. We found a way to compare how these materials are affected by light that helps us understand how they interact with the environment, and found that materials from some places are more sensitive to light than others.
Jingjing Guo, Miriam Glendell, Jeroen Meersmans, Frédérique Kirkels, Jack J. Middelburg, and Francien Peterse
Biogeosciences, 17, 3183–3201, https://doi.org/10.5194/bg-17-3183-2020, https://doi.org/10.5194/bg-17-3183-2020, 2020
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The fluxes of soil organic carbon (OC) transport from land to sea are poorly constrained, mostly due to the lack of a specific tracer for soil OC. Here we evaluate the use of specific molecules derived from soil bacteria as a tracer for soil OC in a small river catchment. We find that the initial soil signal is lost upon entering the aquatic environment. However, the local environmental history of the catchment is reflected by these molecules in the lake sediments that act as their sink.
Zhuo-Yi Zhu, Joanne Oakes, Bradley Eyre, Youyou Hao, Edwin Sien Aun Sia, Shan Jiang, Moritz Müller, and Jing Zhang
Biogeosciences, 17, 2473–2485, https://doi.org/10.5194/bg-17-2473-2020, https://doi.org/10.5194/bg-17-2473-2020, 2020
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Samples were collected in August 2016 in the Rajang River and its estuary, with tropical forest in the river basin and peatland in the estuary. Organic matter composition was influenced by transportation in the river basin, whereas peatland added clear biodegraded parts to the fluvial organic matter, which implies modification of the initial lability and/or starting points in the subsequent degradation and alternation processes after the organic matter enters the sea.
Wenjie Xiao, Yasong Wang, Yongsheng Liu, Xi Zhang, Linlin Shi, and Yunping Xu
Biogeosciences, 17, 2135–2148, https://doi.org/10.5194/bg-17-2135-2020, https://doi.org/10.5194/bg-17-2135-2020, 2020
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The hadal zone (6–11 km depth) is the least explored habitat on Earth. We studied microbial branched glycerol dialkyl glycerol tetraethers (brGDGTs) in the Challenger Deep, Mariana Trench. One unique feature is the strong predominance of 6-methyl brGDGT, which likely reflects an adaption of brGDGT-producing bacteria to alkaline seawater and low temperature. BrGDGTs, with elemental and isotopic data, suggest an autochthonous product for brGDGT. A new approach is proposed for brGDGT sourcing.
Yuge Bai, Edisson Subdiaga, Stefan B. Haderlein, Heike Knicker, and Andreas Kappler
Biogeosciences, 17, 683–698, https://doi.org/10.5194/bg-17-683-2020, https://doi.org/10.5194/bg-17-683-2020, 2020
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Biogeochemical processes of SOM are key for greenhouse gas emission and water quality. We extracted SOM by water or by NaOH–HCl under oxic–anoxic conditions. Chemical and anoxic extractions lead to higher SOM electron exchange capacities, resulting in stimulation of microbial Fe(III) reduction. Therefore, aqueous pH-neutral SOM extracts should be used to reflect environmental SOM redox processes, and artifacts of chemical extractions need to be considered when evaluating SOM redox processes.
Yan Shen, Volker Thiel, Pablo Suarez-Gonzalez, Sebastiaan W. Rampen, and Joachim Reitner
Biogeosciences, 17, 649–666, https://doi.org/10.5194/bg-17-649-2020, https://doi.org/10.5194/bg-17-649-2020, 2020
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Today, sterols are widespread in plants, animals, and fungi but are almost absent in the oldest rocks. Microbial mats, representing the earliest complex ecosystems on Earth, were omnipresent in Precambrian marine environments and may have degraded the sterols at that time. Here we analyze the distribution of sterols through a microbial mat. This provides insight into how variations in biological and nonbiological factors affect the preservation of sterols in modern and ancient microbial mats.
Sarah Coffinet, Travis B. Meador, Lukas Mühlena, Kevin W. Becker, Jan Schröder, Qing-Zeng Zhu, Julius S. Lipp, Verena B. Heuer, Matthew P. Crump, and Kai-Uwe Hinrichs
Biogeosciences, 17, 317–330, https://doi.org/10.5194/bg-17-317-2020, https://doi.org/10.5194/bg-17-317-2020, 2020
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This study deals with two membrane lipids called BDGTs and PDGTs. Membrane lipids are molecules forming the cell envelope of all organisms. Different organisms produce different lipids thus they can be used to detect the presence of specific organisms in the environment. We analyzed the structure of these new lipids and looked for potential producers. We found that they are likely made by microbes emitting methane below the sediment surface and could be used to track these specific microbes.
Ying Wu, Kun Zhu, Jing Zhang, Moritz Müller, Shan Jiang, Aazani Mujahid, Mohd Fakharuddin Muhamad, and Edwin Sien Aun Sia
Biogeosciences, 16, 4517–4533, https://doi.org/10.5194/bg-16-4517-2019, https://doi.org/10.5194/bg-16-4517-2019, 2019
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Our understanding of terrestrial organic matter (TOM) in tropical peat-draining rivers remains limited, especially in Southeast Asia. We explored the characteristics of TOM via bulk parameters and lignin phenols of sediment in Malaysia. This showed that the most important plant source of the organic matter in these rivers is woody angiosperm C3 plants with limited diagenetic alteration. This slower degradation of TOM may be a link to higher total nitrogen content, especially for the small river.
Caitlyn R. Witkowski, Sylvain Agostini, Ben P. Harvey, Marcel T. J. van der Meer, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 16, 4451–4461, https://doi.org/10.5194/bg-16-4451-2019, https://doi.org/10.5194/bg-16-4451-2019, 2019
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Carbon dioxide concentrations (pCO2) in the atmosphere play an integral role in Earth system dynamics, especially climate. Past climates help us understand future ones, but reconstructing pCO2 over the geologic record remains a challenge. This research demonstrates new approaches for exploring past pCO2 via the carbon isotope fractionation in general algal lipids, which we test over a high CO2 gradient from a naturally occurring CO2 seep.
Yongli Zhou, Patrick Martin, and Moritz Müller
Biogeosciences, 16, 2733–2749, https://doi.org/10.5194/bg-16-2733-2019, https://doi.org/10.5194/bg-16-2733-2019, 2019
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We found that peatlands in coastal Sarawak, Borneo, export extremely humified organic matter, which dominates the riverine organic matter pool and conservatively mixes with seawater, while the freshly produced fraction is low and stable in concentration at all salinities. We estimated that terrigenous fractions, which showed high photolability, still account for 20 % of the coastal dissolved organic carbon pool, implying the importance of peat-derived organic matter in the coastal carbon cycle.
Kristin Doering, Claudia Ehlert, Philippe Martinez, Martin Frank, and Ralph Schneider
Biogeosciences, 16, 2163–2180, https://doi.org/10.5194/bg-16-2163-2019, https://doi.org/10.5194/bg-16-2163-2019, 2019
Alexandra N. Loginova, Sören Thomsen, Marcus Dengler, Jan Lüdke, and Anja Engel
Biogeosciences, 16, 2033–2047, https://doi.org/10.5194/bg-16-2033-2019, https://doi.org/10.5194/bg-16-2033-2019, 2019
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High primary production in the Peruvian upwelling system is followed by rapid heterotrophic utilization of organic matter and supports the formation of one of the most intense oxygen minimum zones (OMZs) in the world. Here, we estimated vertical fluxes of oxygen and dissolved organic matter (DOM) from the surface to the OMZ. Our results suggest that DOM remineralization substantially reduces oxygen concentration in the upper water column and controls the shape of the upper oxycline.
Carolina Cisternas-Novoa, Frédéric A. C. Le Moigne, and Anja Engel
Biogeosciences, 16, 927–947, https://doi.org/10.5194/bg-16-927-2019, https://doi.org/10.5194/bg-16-927-2019, 2019
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We investigate the composition and vertical fluxes of POM in two deep basins of the Baltic Sea (GB: Gotland Basin and LD: Landsort Deep). The two basins showed different O2 regimes resulting from the intrusion of oxygen-rich water from the North Sea that ventilated the deep waters in GB, but not in LD.
In GB, O2 intrusions lead to a high abundance of manganese oxides that aggregate with POM, altering its composition and vertical flux and contributing to a higher POC transfer efficiency in GB.
Marina Zamanillo, Eva Ortega-Retuerta, Sdena Nunes, Pablo Rodríguez-Ros, Manuel Dall'Osto, Marta Estrada, Maria Montserrat Sala, and Rafel Simó
Biogeosciences, 16, 733–749, https://doi.org/10.5194/bg-16-733-2019, https://doi.org/10.5194/bg-16-733-2019, 2019
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Many marine microorganisms produce polysaccharide-rich transparent exopolymer particles (TEPs) for rather unknown reasons but with important consequences for the ocean carbon cycle, sea–air gas exchange and formation of organic aerosols. Here we compare surface–ocean distributions of TEPs and physical, chemical and biological variables along a N–S transect in the Atlantic Ocean. Our data suggest that phytoplankton and not bacteria are the main TEP producers, and solar radiation acts as a sink.
Michael Philben, Sara Butler, Sharon A. Billings, Ronald Benner, Kate A. Edwards, and Susan E. Ziegler
Biogeosciences, 15, 6731–6746, https://doi.org/10.5194/bg-15-6731-2018, https://doi.org/10.5194/bg-15-6731-2018, 2018
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We explored the relationship between chemical composition and the temperature sensitivity of moss decomposition using 959-day lab incubations. Mass loss was low despite the predominance of carbohydrates, indicating the persistence of labile C. Scanning electron microscopy revealed little change in the moss cell-wall structure. These results suggest that the moss cell-wall matrix protects labile C from decomposition, contributing to the globally important stocks of moss-derived C.
Yinghui Wang, Robert G. M. Spencer, David C. Podgorski, Anne M. Kellerman, Harunur Rashid, Phoebe Zito, Wenjie Xiao, Dandan Wei, Yuanhe Yang, and Yunping Xu
Biogeosciences, 15, 6637–6648, https://doi.org/10.5194/bg-15-6637-2018, https://doi.org/10.5194/bg-15-6637-2018, 2018
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With global warming, thawing of permafrost releases dissolved organic matter (DOM) into streams. By analyzing DOM along an alpine stream on the Qinghai–Tibet Plateau, we found DOM was mainly from the active layer, but with deepening of the active layer, the contribution of the deep permafrost layer increased, causing a change in the chemical composition of DOM. From the head- to downstream, DOM is undergoing rapid degradation, but some components are persistent and can be transported downstream.
Sergio Balzano, Julie Lattaud, Laura Villanueva, Sebastiaan W. Rampen, Corina P. D. Brussaard, Judith van Bleijswijk, Nicole Bale, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 15, 5951–5968, https://doi.org/10.5194/bg-15-5951-2018, https://doi.org/10.5194/bg-15-5951-2018, 2018
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We tried to identify the microbes which biosynthesize a class of lipids widespread in seawater, the long chain alkyl diols (LCDs). We could not find any microorganism likely involved in the production of LCDs. The amounts of LCDs found are too high to be produced by living organisms and are likely to be part of the refractory organic matter persisting for long periods in the water column.
Julie Lattaud, Frédérique Kirkels, Francien Peterse, Chantal V. Freymond, Timothy I. Eglinton, Jens Hefter, Gesine Mollenhauer, Sergio Balzano, Laura Villanueva, Marcel T. J. van der Meer, Ellen C. Hopmans, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 15, 4147–4161, https://doi.org/10.5194/bg-15-4147-2018, https://doi.org/10.5194/bg-15-4147-2018, 2018
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Long-chain diols (LCDs) are biomarkers that occur widespread in marine environments and also in lakes and rivers. In this study, we looked at the distribution of LCDs in three river systems (Godavari, Danube, and Rhine) in relation to season, precipitation, and temperature. We found out that the LCDs are likely being produced in calm areas of the river systems and that marine LCDs have a different distribution than riverine LCDs.
Marcel Bliedtner, Imke K. Schäfer, Roland Zech, and Hans von Suchodoletz
Biogeosciences, 15, 3927–3936, https://doi.org/10.5194/bg-15-3927-2018, https://doi.org/10.5194/bg-15-3927-2018, 2018
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In this study, we systematically analyze leaf wax derived n-alkane patterns in eastern Georgia to test their potential for paleoenvironmental reconstructions in the semi-humid to semi-arid central southern Caucasus region. We investigated the influence of vegetation types on the leaf wax signal in modern plants and topsoil material. Our results show distinct and systematic differences in the n-alkane patterns between vegetation types and prove their potential for vegetation reconstructions.
Mathieu Rembauville, Stéphane Blain, Clara Manno, Geraint Tarling, Anu Thompson, George Wolff, and Ian Salter
Biogeosciences, 15, 3071–3084, https://doi.org/10.5194/bg-15-3071-2018, https://doi.org/10.5194/bg-15-3071-2018, 2018
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Sinking phytoplankton from the surface ocean provide the principal energy source to deep-ocean ecosystems. Our aim was to understand how different phytoplankton communities impact the chemical nature of this sinking material. We show certain types of phytoplankton can preferentially export energy-rich storage compounds to the seafloor. Any climate-driven effects on phytoplankton community structure could thus impact remote deep-ocean ecosystems thousands of kilometres beneath the surface.
Xiaocong Wei, Xiangwen Deng, Wenhua Xiang, Pifeng Lei, Shuai Ouyang, Hongfang Wen, and Liang Chen
Biogeosciences, 15, 2991–3002, https://doi.org/10.5194/bg-15-2991-2018, https://doi.org/10.5194/bg-15-2991-2018, 2018
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Karst is a kind of typical calcium-rich environment, which is widely distributed. We measured the Ca2+ content of 41 plant species, as well as soil total Ca2+ and exchange Ca2+. We found out that different plants have different ways to high Ca2+ adaptation. According to the different high Ca2+ adaptation of the 17 dominant species, we divided them into 3 categories: Ca-indifferent plants, high-Ca plants and low-Ca plants. Our results can provide a theoretical basis for vegetation restoration.
Janina G. Stapel, Georg Schwamborn, Lutz Schirrmeister, Brian Horsfield, and Kai Mangelsdorf
Biogeosciences, 15, 1969–1985, https://doi.org/10.5194/bg-15-1969-2018, https://doi.org/10.5194/bg-15-1969-2018, 2018
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Climate warming in the Arctic results in thawing of permafrost deposits. This promotes the accessibility of freeze-locked old organic matter (OM) accumulated during the past. Characterizing OM of different depositional ages, we were able to show that OM from last glacial Yedoma deposits possess the highest potential to provide organic substrates such as acetate for microbial greenhouse gas production and therefore to accelerate the carbon–climate feedback cycle during ongoing global warming.
Changchun Huang, Quanliang Jiang, Ling Yao, Hao Yang, Chen Lin, Tao Huang, A-Xing Zhu, and Yimin Zhang
Biogeosciences, 15, 1827–1841, https://doi.org/10.5194/bg-15-1827-2018, https://doi.org/10.5194/bg-15-1827-2018, 2018
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The latitudinal dependency of POC / PON in ocean and inland water is significant, regulated by trophic state and climate, etc. factors. POC / PON significantly increased from coastal water (6.89 ± 2.38) to open ocean (7.59 ± 4.22) with the increasing rate of 0.0024 / km. The re-examination of the global relationship between, and variations in, POC and PON could be important for the global and regional coupling between the carbon and nitrogen cycles in the ocean and freshwater.
Nicole J. Bale, Tracy A. Villareal, Ellen C. Hopmans, Corina P. D. Brussaard, Marc Besseling, Denise Dorhout, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 15, 1229–1241, https://doi.org/10.5194/bg-15-1229-2018, https://doi.org/10.5194/bg-15-1229-2018, 2018
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Associations between diatoms and N-fixing cyanobacteria (diatom–diazotroph associations, DDAs) play an important role in the N cycle of the tropical North Atlantic. Heterocysts are the site of N fixation and contain unique glycolipids. We measured these glycolipids in the water column and surface sediment from the tropical North Atlantic. We found a significant correlation between the concentration of glycolipid and of DDAs, strengthening their application as biomarkers.
Laurent Jeanneau, Richard Rowland, and Shreeram Inamdar
Biogeosciences, 15, 973–985, https://doi.org/10.5194/bg-15-973-2018, https://doi.org/10.5194/bg-15-973-2018, 2018
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The source of particulate organic matter in headwaters during storm events remains an open question. We use the molecular composition of organic matter sampled during four spring–summer storms and compare it to potential sources. We identify litter, streambed and vicinal soils as the main sources of particulate organic matter. Their proportions depend on (i) the size of the catchment and (ii) the rain event.
Suhui Ma, Feng He, Di Tian, Dongting Zou, Zhengbing Yan, Yulong Yang, Tiancheng Zhou, Kaiyue Huang, Haihua Shen, and Jingyun Fang
Biogeosciences, 15, 693–702, https://doi.org/10.5194/bg-15-693-2018, https://doi.org/10.5194/bg-15-693-2018, 2018
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Plant carbon (C) content is critical to the assessment of the global C cycle. Our results showed that the global average C contents in organs were significantly lower than a canonical value of 50 %. Plant C content tended to decrease with increasing latitude, and life form explained more variation than climate. Our findings suggest that specific C content values of different organs and life forms should be incorporated into the estimations of regional and global vegetation biomass C stocks.
Martina Sollai, Ellen C. Hopmans, Nicole J. Bale, Anchelique Mets, Lisa Warden, Matthias Moros, and Jaap S. Sinninghe Damsté
Biogeosciences, 14, 5789–5804, https://doi.org/10.5194/bg-14-5789-2017, https://doi.org/10.5194/bg-14-5789-2017, 2017
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The Baltic Sea is characterized by recurring summer phytoplankton blooms, dominated by a few cyanobacterial species. These bacteria are able to use dinitrogen gas as the source for nitrogen and produce very specific lipids. We analyzed these lipids in a sediment core to study their presence over the past 7000 years. This reveals that cyanobacterial blooms have not only occurred in the last decades but were common at times when the Baltic was connected to the North Sea.
Jordon D. Hemingway, Daniel H. Rothman, Sarah Z. Rosengard, and Valier V. Galy
Biogeosciences, 14, 5099–5114, https://doi.org/10.5194/bg-14-5099-2017, https://doi.org/10.5194/bg-14-5099-2017, 2017
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The balance between organic matter (OM) fixation and decay is a major control on atmospheric CO2 concentrations. Understanding the environmental, chemical, and physical mechanisms that control the distribution of OM decay rates is therefore critical for constraining the global carbon cycle. In this manuscript, we derive a method to relate OM reactivity to its isotope composition using a kinetic model and provide a novel framework to discern the controls on OM decay rates.
Zuchuan Li and Nicolas Cassar
Biogeosciences, 14, 5015–5027, https://doi.org/10.5194/bg-14-5015-2017, https://doi.org/10.5194/bg-14-5015-2017, 2017
Marie Denis, Laurent Jeanneau, Patrice Petitjean, Anaëlle Murzeau, Marine Liotaud, Louison Yonnet, and Gérard Gruau
Biogeosciences, 14, 5039–5051, https://doi.org/10.5194/bg-14-5039-2017, https://doi.org/10.5194/bg-14-5039-2017, 2017
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The results of this study highlight the changes of DOM composition in soil solutions and surface runoff, probably controlled by water-table dynamics and pre-event hydrological conditions. These changes should be taken into account for a better understanding of micropollutant mobility. Moreover, this work has implications for modeling DOM export in headwater catchments, as many studies assume that DOM transfer during storm events consists of the flushing of pre-existing soil solution DOM.
Dandan Duan, Dainan Zhang, Yu Yang, Jingfu Wang, Jing'an Chen, and Yong Ran
Biogeosciences, 14, 4009–4022, https://doi.org/10.5194/bg-14-4009-2017, https://doi.org/10.5194/bg-14-4009-2017, 2017
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Neutral carbohydrates, carbon isotopic composition, and algal productivity proxies in three reservoir sediment cores, South China, were investigated. Monosaccharide compositions and diagnostic parameters indicate a predominant contribution of phytoplankton in the sediment cores. Algal monosaccharide content is highly related to the algal productivity and increasing mean air temperature, but not to nutrient input, demonstrating the effect of climate warming in low-latitude regions.
Ylva van Meeningen, Guy Schurgers, Riikka Rinnan, and Thomas Holst
Biogeosciences, 14, 4045–4060, https://doi.org/10.5194/bg-14-4045-2017, https://doi.org/10.5194/bg-14-4045-2017, 2017
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Leaf scale measurements have been performed on English oak, European beech and Norway spruce at a field site in Denmark to study the release of volatile compounds in response to a change in light. Whilst some compounds, like isoprene and sabinene, increased with increasing light, other compounds, like camphene, showed no light response for most of the trees. This can help to increase our knowledge of how species and compounds respond to light and to possibly improve how they can be modeled.
Shuwen Sun, Enno Schefuß, Stefan Mulitza, Cristiano M. Chiessi, André O. Sawakuchi, Matthias Zabel, Paul A. Baker, Jens Hefter, and Gesine Mollenhauer
Biogeosciences, 14, 2495–2512, https://doi.org/10.5194/bg-14-2495-2017, https://doi.org/10.5194/bg-14-2495-2017, 2017
Anja Engel, Hannes Wagner, Frédéric A. C. Le Moigne, and Samuel T. Wilson
Biogeosciences, 14, 1825–1838, https://doi.org/10.5194/bg-14-1825-2017, https://doi.org/10.5194/bg-14-1825-2017, 2017
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To better understand the role of oxygen for the biological carbon pump, we studied particle fluxes through hypoxic waters in the eastern tropical North Atlantic. Attenuation of organic carbon fluxes over depth was lower than expected from seawater temperatures, indicating co-effects of oxygen concentration. Differences were observed for individual organic components, suggesting that future carbon export fluxes may depend on changes in surface ocean organic matter quality under global change.
Julie Tolu, Johan Rydberg, Carsten Meyer-Jacob, Lorenz Gerber, and Richard Bindler
Biogeosciences, 14, 1773–1792, https://doi.org/10.5194/bg-14-1773-2017, https://doi.org/10.5194/bg-14-1773-2017, 2017
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In this study, we demonstrated that the composition of sediment organic matter can vary significantly within a single lake, in a close relationship with the spatial patterns of elemental inorganic geochemistry. This results from a combination of different bio-, geo- and physicochemical lake factors, and our results highlight that the potential for large spatial variability across lakes should be considered when studying carbon, nutrient and trace element cycling at lake and global scales.
Emma L. Cavan, Stephanie A. Henson, Anna Belcher, and Richard Sanders
Biogeosciences, 14, 177–186, https://doi.org/10.5194/bg-14-177-2017, https://doi.org/10.5194/bg-14-177-2017, 2017
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The biological carbon pump (BCP) plays a key role in regulating atmospheric CO2. Controls on the efficiency at which this occurs are poorly known. Here we combine in situ observations with an ecosystem model to show that zooplankton have an important role in regulating the efficiency of the BCP. Predicted future changes in ocean conditions, such as expansion of oxygen minimum zones, may decrease the role of zooplankton in the BCP globally, increasing its efficiency and altering atmospheric CO2.
Joan A. Salvadó, Tommaso Tesi, Marcus Sundbom, Emma Karlsson, Martin Kruså, Igor P. Semiletov, Elena Panova, and Örjan Gustafsson
Biogeosciences, 13, 6121–6138, https://doi.org/10.5194/bg-13-6121-2016, https://doi.org/10.5194/bg-13-6121-2016, 2016
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Fluvial discharge and coastal erosion of the permafrost-dominated East Siberian Arctic delivers large quantities of terrigenous organic carbon (Terr-OC) to marine waters. We assessed its fate and composition in different marine pools with a suite of biomarkers. The dissolved organic carbon is transporting off-shelf “young” and fresh vascular plant material, while sedimentary and near-bottom particulate organic carbon preferentially carries old organic carbon released from thawing permafrost.
Ylva van Meeningen, Guy Schurgers, Riikka Rinnan, and Thomas Holst
Biogeosciences, 13, 6067–6080, https://doi.org/10.5194/bg-13-6067-2016, https://doi.org/10.5194/bg-13-6067-2016, 2016
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English oak and European beech are common European trees known to release volatile compounds such as isoprene and monoterpenes. By doing leaf chamber measurements at three sites in Europe, the aim was to study how the emission differed for cloned trees growing at different sites. The measured emission rates from clones varied between sites, but the relative compound contribution was stable both within and between sites. This can help to increase our knowledge of emission pattern variability.
Lisa Bröder, Tommaso Tesi, Joan A. Salvadó, Igor P. Semiletov, Oleg V. Dudarev, and Örjan Gustafsson
Biogeosciences, 13, 5003–5019, https://doi.org/10.5194/bg-13-5003-2016, https://doi.org/10.5194/bg-13-5003-2016, 2016
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Thawing permafrost may release large amounts of terrestrial organic carbon (TerrOC) to the Arctic Ocean. We assessed its fate in the marine environment with a suite of biomarkers. Across the Laptev Sea their concentrations in surface sediments decreased significantly and showed a trend to qualitatively more degraded TerrOC with increasing water depth. We infer that the degree of degradation of TerrOC is a function of the time spent under oxic conditions during protracted cross-shelf transport.
Juliane Bischoff, Robert B. Sparkes, Ayça Doğrul Selver, Robert G. M. Spencer, Örjan Gustafsson, Igor P. Semiletov, Oleg V. Dudarev, Dirk Wagner, Elizaveta Rivkina, Bart E. van Dongen, and Helen M. Talbot
Biogeosciences, 13, 4899–4914, https://doi.org/10.5194/bg-13-4899-2016, https://doi.org/10.5194/bg-13-4899-2016, 2016
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The Arctic contains a large pool of carbon that is vulnerable to warming and can be released by rivers and coastal erosion. We study microbial lipids (BHPs) in permafrost and shelf sediments to trace the source, transport and fate of this carbon. BHPs in permafrost deposits are released to the shelf by rivers and coastal erosion, in contrast to other microbial lipids (GDGTs) that are transported by rivers. Several further analyses are needed to understand the complex East Siberian Shelf system.
Lisa Thieme, Daniel Graeber, Martin Kaupenjohann, and Jan Siemens
Biogeosciences, 13, 4697–4705, https://doi.org/10.5194/bg-13-4697-2016, https://doi.org/10.5194/bg-13-4697-2016, 2016
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Freezing can affect dissolved organic matter properties and concentrations. Nevertheless, water samples are regularly frozen for sample preservation. To test, if fast-freezing with liquid nitrogen instead of normal freezing at −18 °C can prevent changes in DOM characteristics, we compared fresh and differently frozen terrestrial water samples. We found that fast-freezing with liquid nitrogen can prevent bulk organic matter concentrations but not its spectroscopic properties.
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Short summary
We use a novel ion chromatographic analysis that provides the first identification and quantification of major low-molecular-weight dissolved organic carbon (LMW-DOC) compounds in basal ice. LMW-DOC concentrations were dependent on the bioavailability of the overridden organic carbon, which in turn was influenced by the type of overridden material. The overridden material may thus act as a direct (abiotic leaching) and indirect (microbial cycling) source of DOC to the subglacial environment.
We use a novel ion chromatographic analysis that provides the first identification and...
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