Articles | Volume 17, issue 2
https://doi.org/10.5194/bg-17-423-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-17-423-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
29 Jan 2020
Research article |
| 29 Jan 2020
| 29 Jan 2020
Anomalies in the carbonate system of Red Sea coastal habitats
Kimberlee Baldry
CORRESPONDING AUTHOR
Red Sea Research Center and Computational Bioscience Research Center,
King Abdullah University of Science and Technology (KAUST), Thuwal, 23955,
Saudi Arabia
currently at: Institute of Marine and Antarctic Studies,
University of Tasmania, Hobart 7000, Australia
Vincent Saderne
Red Sea Research Center and Computational Bioscience Research Center,
King Abdullah University of Science and Technology (KAUST), Thuwal, 23955,
Saudi Arabia
Daniel C. McCorkle
Woods Hole Oceanographic Institution (WHOI), Woods Hole,
Massachusetts 02543, USA
James H. Churchill
Woods Hole Oceanographic Institution (WHOI), Woods Hole,
Massachusetts 02543, USA
Susana Agusti
Red Sea Research Center and Computational Bioscience Research Center,
King Abdullah University of Science and Technology (KAUST), Thuwal, 23955,
Saudi Arabia
Carlos M. Duarte
Red Sea Research Center and Computational Bioscience Research Center,
King Abdullah University of Science and Technology (KAUST), Thuwal, 23955,
Saudi Arabia
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Mallory A. Sea, Neus Garcias-Bonet, Vincent Saderne, and Carlos M. Duarte
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Aisling Fontanini, Alexandra Steckbauer, Sam Dupont, and Carlos M. Duarte
Biogeosciences, 15, 3717–3729, https://doi.org/10.5194/bg-15-3717-2018, https://doi.org/10.5194/bg-15-3717-2018, 2018
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Francesca Iuculano, Carlos Maria Duarte, Núria Marbà, and Susana Agustí
Biogeosciences, 14, 5069–5075, https://doi.org/10.5194/bg-14-5069-2017, https://doi.org/10.5194/bg-14-5069-2017, 2017
Vincent Saderne, Peer Fietzek, Jens Daniel Müller, Arne Körtzinger, and Claas Hiebenthal
Biogeosciences Discuss., https://doi.org/10.5194/bg-2017-351, https://doi.org/10.5194/bg-2017-351, 2017
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Carlos M. Duarte
Biogeosciences, 14, 301–310, https://doi.org/10.5194/bg-14-301-2017, https://doi.org/10.5194/bg-14-301-2017, 2017
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Alexandra Coello-Camba and Susana Agustí
Biogeosciences Discuss., https://doi.org/10.5194/bg-2016-424, https://doi.org/10.5194/bg-2016-424, 2016
Revised manuscript not accepted
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We demonstrated that the effects of increased temperature and pCO2
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Oscar Serrano, Paul S. Lavery, Carlos M. Duarte, Gary A. Kendrick, Antoni Calafat, Paul H. York, Andy Steven, and Peter I. Macreadie
Biogeosciences, 13, 4915–4926, https://doi.org/10.5194/bg-13-4915-2016, https://doi.org/10.5194/bg-13-4915-2016, 2016
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Oscar Serrano, Aurora M. Ricart, Paul S. Lavery, Miguel Angel Mateo, Ariane Arias-Ortiz, Pere Masque, Mohammad Rozaimi, Andy Steven, and Carlos M. Duarte
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J. E. Rheuban, S. Williamson, J. E. Costa, D. M. Glover, R. W. Jakuba, D. C. McCorkle, C. Neill, T. Williams, and S. C. Doney
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D. Krause-Jensen, C. M. Duarte, I. E. Hendriks, L. Meire, M. E. Blicher, N. Marbà, and M. K. Sejr
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V. Saderne, P. Fietzek, S. Aßmann, A. Körtzinger, and C. Hiebenthal
Biogeosciences Discuss., https://doi.org/10.5194/bgd-12-11423-2015, https://doi.org/10.5194/bgd-12-11423-2015, 2015
Revised manuscript not accepted
A. N. Schwier, C. Rose, E. Asmi, A. M. Ebling, W. M. Landing, S. Marro, M.-L. Pedrotti, A. Sallon, F. Iuculano, S. Agusti, A. Tsiola, P. Pitta, J. Louis, C. Guieu, F. Gazeau, and K. Sellegri
Atmos. Chem. Phys., 15, 7961–7976, https://doi.org/10.5194/acp-15-7961-2015, https://doi.org/10.5194/acp-15-7961-2015, 2015
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The effect of ocean acidification and changing water conditions on primary (and secondary) marine aerosol emissions is not well understood on a regional or a global scale. To investigate this effect, we deployed mesocosms in the Mediterranean Sea for several weeks during both winter pre-bloom and summer oligotrophic conditions and subjected them to various levels of CO2. We observed larger effects due to the differences between a pre-bloom and oligotrophic environment than due to CO2 levels.
S. Lasternas and S. Agustí
Biogeosciences, 11, 6377–6387, https://doi.org/10.5194/bg-11-6377-2014, https://doi.org/10.5194/bg-11-6377-2014, 2014
L. S. García-Corral, E. Barber, A. Regaudie-de-Gioux, S. Sal, J. M. Holding, S. Agustí, N. Navarro, P. Serret, P. Mozetič, and C. M. Duarte
Biogeosciences, 11, 4529–4540, https://doi.org/10.5194/bg-11-4529-2014, https://doi.org/10.5194/bg-11-4529-2014, 2014
J.-P. Gattuso, W. Kirkwood, J. P. Barry, E. Cox, F. Gazeau, L. Hansson, I. Hendriks, D.I. Kline, P. Mahacek, S. Martin, P. McElhany, E. T. Peltzer, J. Reeve, D. Roberts, V. Saderne, K. Tait, S. Widdicombe, and P. G. Brewer
Biogeosciences, 11, 4057–4075, https://doi.org/10.5194/bg-11-4057-2014, https://doi.org/10.5194/bg-11-4057-2014, 2014
S. Ruiz-Halpern, M. Ll. Calleja, J. Dachs, S. Del Vento, M. Pastor, M. Palmer, S. Agustí, and C. M. Duarte
Biogeosciences, 11, 2755–2770, https://doi.org/10.5194/bg-11-2755-2014, https://doi.org/10.5194/bg-11-2755-2014, 2014
I. E. Hendriks, Y. S. Olsen, L. Ramajo, L. Basso, A. Steckbauer, T. S. Moore, J. Howard, and C. M. Duarte
Biogeosciences, 11, 333–346, https://doi.org/10.5194/bg-11-333-2014, https://doi.org/10.5194/bg-11-333-2014, 2014
S. Lasternas, M. Piedeleu, P. Sangrà, C. M. Duarte, and S. Agustí
Biogeosciences, 10, 2129–2143, https://doi.org/10.5194/bg-10-2129-2013, https://doi.org/10.5194/bg-10-2129-2013, 2013
R. Vaquer-Sunyer, C. M. Duarte, J. Holding, A. Regaudie-de-Gioux, L. S. García-Corral, M. Reigstad, and P. Wassmann
Biogeosciences, 10, 1451–1469, https://doi.org/10.5194/bg-10-1451-2013, https://doi.org/10.5194/bg-10-1451-2013, 2013
M. Alcaraz, R. Almeda, E. Saiz, A. Calbet, C. M. Duarte, S. Agustí, R. Santiago, and A. Alonso
Biogeosciences, 10, 689–697, https://doi.org/10.5194/bg-10-689-2013, https://doi.org/10.5194/bg-10-689-2013, 2013
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Spring-neap tidal cycles modulate the strength of the carbon source at the estuary-coast interface
Technical note: Ocean Alkalinity Enhancement Pelagic Impact Intercomparison Project (OAEPIIP)
Estimates of carbon sequestration potential in an expanding Arctic fjord (Hornsund, Svalbard) affected by dark plumes of glacial meltwater
An assessment of ocean alkalinity enhancement using aqueous hydroxides: kinetics, efficiency, and precipitation thresholds
Dissolved nitric oxide in the lower Elbe Estuary and the Port of Hamburg area
The bacteria-protist link as a main route of dissolved organic matter across contrasting productivity areas in the Patagonian Shelf
Variable contribution of wastewater treatment plant effluents to downstream nitrous oxide concentrations and emissions
Depositional controls and budget of organic carbon burial in fine-grained sediments of the North Sea – the Helgoland Mud Area as a test field
Improved understanding of eutrophication trends, indicators and problem areas using machine learning
Distribution of nutrients and dissolved organic matter in a eutrophic equatorial estuary: the Johor River and the East Johor Strait
Amplified bottom water acidification rates on the Bering Sea shelf from 1970–2022
Investigating the effect of silicate- and calcium-based ocean alkalinity enhancement on diatom silicification
Ocean alkalinity enhancement using sodium carbonate salts does not lead to measurable changes in Fe dynamics in a mesocosm experiment
Quantification and mitigation of bottom-trawling impacts on sedimentary organic carbon stocks in the North Sea
Influence of ocean alkalinity enhancement with olivine or steel slag on a coastal plankton community in Tasmania
Multi-model comparison of trends and controls of near-bed oxygen concentration on the northwest European continental shelf under climate change
Picoplanktonic methane production in eutrophic surface waters
Vertical mixing alleviates autumnal oxygen deficiency in the central North Sea
Hypoxia also occurs in small highly turbid estuaries: the example of the Charente (Bay of Biscay)
Seasonality and response of ocean acidification and hypoxia to major environmental anomalies in the southern Salish Sea, North America (2014–2018)
Oceanographic processes driving low-oxygen conditions inside Patagonian fjords
Above- and belowground plant mercury dynamics in a salt marsh estuary in Massachusetts, USA
Variability and drivers of carbonate chemistry at shellfish aquaculture sites in the Salish Sea, British Columbia
Unusual Hemiaulus bloom influences ocean productivity in Northeastern US Shelf waters
Insights into carbonate environmental conditions in the Chukchi Sea
UAV approaches for improved mapping of vegetation cover and estimation of carbon storage of small saltmarshes: examples from Loch Fleet, northeast Scotland
Iron “ore” nothing: benthic iron fluxes from the oxygen-deficient Santa Barbara Basin enhance phytoplankton productivity in surface waters
Marine anoxia initiates giant sulfur-oxidizing bacterial mat proliferation and associated changes in benthic nitrogen, sulfur, and iron cycling in the Santa Barbara Basin, California Borderland
Uncertainty in the evolution of northwestern North Atlantic circulation leads to diverging biogeochemical projections
The additionality problem of ocean alkalinity enhancement
Short-term variation in pH in seawaters around coastal areas of Japan: characteristics and forcings
Revisiting the applicability and constraints of molybdenum- and uranium-based paleo redox proxies: comparing two contrasting sill fjords
Influence of a small submarine canyon on biogenic matter export flux in the lower St. Lawrence Estuary, eastern Canada
Single-celled bioturbators: benthic foraminifera mediate oxygen penetration and prokaryotic diversity in intertidal sediment
Assessing impacts of coastal warming, acidification, and deoxygenation on Pacific oyster (Crassostrea gigas) farming: a case study in the Hinase area, Okayama Prefecture, and Shizugawa Bay, Miyagi Prefecture, Japan
Librada Ramírez, Leonardo J. Pozzo-Pirotta, Aja Trebec, Víctor Manzanares-Vázquez, José L. Díez, Javier Arístegui, Ulf Riebesell, Stephen D. Archer, and María Segovia
Biogeosciences, 22, 1865–1886, https://doi.org/10.5194/bg-22-1865-2025, https://doi.org/10.5194/bg-22-1865-2025, 2025
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We studied the potential effects of increasing ocean alkalinity on a natural plankton community in subtropical waters of the Atlantic near Gran Canaria, Spain. Alkalinity is the capacity of water to resist acidification, and plankton are usually microscopic plants (phytoplankton) and animals (zooplankton), often less than 2.5 cm in length. This study suggests that increasing ocean alkalinity did not have a significant negative impact on the plankton community studied.
Leissing Frederick, Mauricio A. Urbina, and Ruben Escribano
Biogeosciences, 22, 1839–1852, https://doi.org/10.5194/bg-22-1839-2025, https://doi.org/10.5194/bg-22-1839-2025, 2025
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Evidence shows that due to global warming, zooplankton inhabiting the coastal upwelling zone are exposed to increasing hypoxia affecting their physiology, metabolism, and population dynamics. The adaptive responses of zooplankton to cope with mild/severe hypoxia may depend on trade-offs with other metabolic/energy demands, implying less energy for growth, feeding, and reproduction, with ecological consequences for the zooplankton population and the marine food web.
Sören Iwe, Oliver Schmale, and Bernd Schneider
Biogeosciences, 22, 1767–1779, https://doi.org/10.5194/bg-22-1767-2025, https://doi.org/10.5194/bg-22-1767-2025, 2025
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We present a novel method for quantifying N2 fixation by cyanobacteria, which is crucial in Baltic Sea eutrophication. Our Gas Equilibrium – Membrane-Inlet Mass Spectrometer (GE-MIMS), designed for operation on voluntary observing ships (VOSs), enables large-scale monitoring of surface water N2 depletion caused by N2 fixation. Laboratory tests confirm the device’s accuracy and precision, ensuring that it can complement current methods and contribute valuable data for better understanding N2 fixation in the Baltic Sea.
Yong-Woo Lee, Mi-Ok Park, Seong-Gil Kim, Tae-Hoon Kim, Yong Hwa Oh, Sang Heon Lee, and DongJoo Joung
Biogeosciences, 22, 675–690, https://doi.org/10.5194/bg-22-675-2025, https://doi.org/10.5194/bg-22-675-2025, 2025
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Long-term pH variation in coastal waters along the Korean Peninsula was assessed for the first time, and it exhibited no significant pH change over an 11-year period. This contrasts with the ongoing pH decline in open oceans and other coastal areas. Analysis of environmental data showed that pH is mainly controlled by dissolved oxygen in bottom waters. This suggests that ocean warming could cause a pH decline in Korean coastal waters, affecting many fish and seaweed aquaculture operations.
Kadir Biçe, Tristen Myers Stewart, George G. Waldbusser, and Christof Meile
Biogeosciences, 22, 641–657, https://doi.org/10.5194/bg-22-641-2025, https://doi.org/10.5194/bg-22-641-2025, 2025
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We studied the effect of addition of carbonate minerals on coastal sediments. We carried out laboratory experiments to quantify the dissolution kinetics and integrated these observations into a numerical model that describes biogeochemical cycling in surficial sediments. Using the model, we demonstrate the buffering effect of the mineral additions and their duration. We quantify the effect under different environmental conditions and assess the potential for increased atmospheric CO2 uptake.
Feifei Liu, Ute Daewel, Jan Kossack, Kubilay Timur Demir, Helmuth Thomas, and Corinna Schrum
EGUsphere, https://doi.org/10.5194/egusphere-2025-81, https://doi.org/10.5194/egusphere-2025-81, 2025
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Ocean Alkalinity Enhancement boosts oceanic CO₂ absorption, offering a climate solution. Using a regional model, we examined OAE in the North Sea, revealing that shallow coastal areas achieve higher CO₂ uptake than offshore, where alkalinity is more susceptible to deep-ocean loss. Long-term carbon storage is limited, and pH shifts vary by location. Our findings guide OAE deployment to optimize carbon removal while minimizing ecological effects, supporting global climate mitigation efforts.
Jessica L. Oberlander, Mackenzie E. Burke, Cat A. London, and Hugh L. MacIntyre
Biogeosciences, 22, 499–512, https://doi.org/10.5194/bg-22-499-2025, https://doi.org/10.5194/bg-22-499-2025, 2025
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Ocean alkalinity enhancement (OAE) is a promising negative emission technology that results in the net sequestration of atmospheric carbon. In this paper, we assess the potential impact of OAE on phytoplankton through an analysis of prior studies and the effects of simulated OAE on photosynthetic competence. Our findings suggest that there may be little if any significant impact on most phytoplankton studied to date if OAE is conducted in well-flushed, nearshore environments.
Laura Marín-Samper, Javier Arístegui, Nauzet Hernández-Hernández, and Ulf Riebesell
Biogeosciences, 21, 5707–5724, https://doi.org/10.5194/bg-21-5707-2024, https://doi.org/10.5194/bg-21-5707-2024, 2024
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This study exposed a natural community to two non-CO2-equilibrated ocean alkalinity enhancement (OAE) deployments using different minerals. Adding alkalinity in this manner decreases dissolved CO2, essential for photosynthesis. While photosynthesis was not suppressed, bloom formation was mildly delayed, potentially impacting marine food webs. The study emphasizes the need for further research on OAE without prior equilibration and on its ecological implications.
Riss M. Kell, Rebecca J. Chmiel, Deepa Rao, Dawn M. Moran, Matthew R. McIlvin, Tristan J. Horner, Nicole L. Schanke, Ichiko Sugiyama, Robert B. Dunbar, Giacomo R. DiTullio, and Mak A. Saito
Biogeosciences, 21, 5685–5706, https://doi.org/10.5194/bg-21-5685-2024, https://doi.org/10.5194/bg-21-5685-2024, 2024
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Despite interest in modeling the biogeochemical uptake and cycling of the trace metal zinc (Zn), measurements of Zn uptake in natural marine phytoplankton communities have not been conducted previously. To fill this gap, we employed a stable isotope uptake rate measurement method to quantify Zn uptake into natural phytoplankton assemblages within the Southern Ocean. Zn demand was high and rapid enough to depress the inventory of Zn available to phytoplankton on seasonal timescales.
Luisa Chiara Meiritz, Tim Rixen, Anja Karin van der Plas, Tarron Lamont, and Niko Lahajnar
Biogeosciences, 21, 5261–5276, https://doi.org/10.5194/bg-21-5261-2024, https://doi.org/10.5194/bg-21-5261-2024, 2024
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Moored and drifting sediment trap experiments in the northern (nBUS) and southern (sBUS) Benguela Upwelling System showed that active carbon fluxes by vertically migrating zooplankton were about 3 times higher in the sBUS than in the nBUS. Despite these large variabilities, the mean passive particulate organic carbon (POC) fluxes were almost equal in the two subsystems. The more intense near-bottom oxygen minimum layer seems to lead to higher POC fluxes and accumulation rates in the nBUS.
Michael R. Roman, Andrew H. Altieri, Denise Breitburg, Erica M. Ferrer, Natalya D. Gallo, Shin-ichi Ito, Karin Limburg, Kenneth Rose, Moriaki Yasuhara, and Lisa A. Levin
Biogeosciences, 21, 4975–5004, https://doi.org/10.5194/bg-21-4975-2024, https://doi.org/10.5194/bg-21-4975-2024, 2024
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Oxygen-depleted ocean waters have increased worldwide. In order to improve our understanding of the impacts of this oxygen loss on marine life it is essential that we develop reliable indicators that track the negative impacts of low oxygen. We review various indicators of low-oxygen stress for marine animals including their use, research needs, and application to confront the challenges of ocean oxygen loss.
Charlotte Eich, Mathijs van Manen, J. Scott P. McCain, Loay J. Jabre, Willem H. van de Poll, Jinyoung Jung, Sven B. E. H. Pont, Hung-An Tian, Indah Ardiningsih, Gert-Jan Reichart, Erin M. Bertrand, Corina P. D. Brussaard, and Rob Middag
Biogeosciences, 21, 4637–4663, https://doi.org/10.5194/bg-21-4637-2024, https://doi.org/10.5194/bg-21-4637-2024, 2024
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Phytoplankton growth in the Southern Ocean (SO) is often limited by low iron (Fe) concentrations. Sea surface warming impacts Fe availability and can affect phytoplankton growth. We used shipboard Fe clean incubations to test how changes in Fe and temperature affect SO phytoplankton. Their abundances usually increased with Fe addition and temperature increase, with Fe being the major factor. These findings imply potential shifts in ecosystem structure, impacting food webs and elemental cycling.
Miriam Tivig, David P. Keller, and Andreas Oschlies
Biogeosciences, 21, 4469–4493, https://doi.org/10.5194/bg-21-4469-2024, https://doi.org/10.5194/bg-21-4469-2024, 2024
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Marine biological production is highly dependent on the availability of nitrogen and phosphorus. Rivers are the main source of phosphorus to the oceans but poorly represented in global model oceans. We include dissolved nitrogen and phosphorus from river export in a global model ocean and find that the addition of riverine phosphorus affects marine biology on millennial timescales more than riverine nitrogen alone. Globally, riverine phosphorus input increases primary production rates.
Menghong Dong, Xinyu Guo, Takuya Matsuura, Taichi Tebakari, and Jing Zhang
EGUsphere, https://doi.org/10.5194/egusphere-2024-2581, https://doi.org/10.5194/egusphere-2024-2581, 2024
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Submarine groundwater discharge (SGD), a common coastal hydrological process that involves submarine inflow of groundwater into the sea, is associated with a large nutrient load. To clarify the distribution of SGD-derived nutrients after release at the bottom of the sea and their contribution to phytoplankton growth in the marine ecosystem, we modeled the SGD process in Toyama Bay using a specialized computer code that can distinguish SGD-derived nutrients from nutrients from other sources.
Esdoorn Willcox, Marcos Lemes, Thomas Juul-Pedersen, Mikael Kristian Sejr, Johnna Marchiano Holding, and Søren Rysgaard
Biogeosciences, 21, 4037–4050, https://doi.org/10.5194/bg-21-4037-2024, https://doi.org/10.5194/bg-21-4037-2024, 2024
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In this work, we measured the chemistry of seawater from samples obtained from different depths and locations off the east coast of the Northeast Greenland National Park to determine what is influencing concentrations of dissolved CO2. Historically, the region has always been thought to take up CO2 from the atmosphere, but we show that it is possible for the region to become a source in late summer. We discuss the variables that may be related to such changes.
Vlad A. Macovei, Louise C. V. Rewrie, Rüdiger Röttgers, and Yoana G. Voynova
EGUsphere, https://doi.org/10.5194/egusphere-2024-2643, https://doi.org/10.5194/egusphere-2024-2643, 2024
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A commercial vessel equipped with scientific instruments regularly travelled between two large macro-tidal estuaries. We found that biogeochemical variability in the outer estuaries is driven by the 14-day spring-neap tidal cycle, with strong effects on dissolved inorganic and organic carbon concentrations and distribution. Since this land-sea interface effect increases the strength of the carbon source to the atmosphere by 74 % during spring tide, it should be accounted for in regional models.
Lennart Thomas Bach, Aaron James Ferderer, Julie LaRoche, and Kai Georg Schulz
Biogeosciences, 21, 3665–3676, https://doi.org/10.5194/bg-21-3665-2024, https://doi.org/10.5194/bg-21-3665-2024, 2024
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Ocean alkalinity enhancement (OAE) is an emerging marine CO2 removal method, but its environmental effects are insufficiently understood. The OAE Pelagic Impact Intercomparison Project (OAEPIIP) provides funding for a standardized and globally replicated microcosm experiment to study the effects of OAE on plankton communities. Here, we provide a detailed manual for the OAEPIIP experiment. We expect OAEPIIP to help build scientific consensus on the effects of OAE on plankton.
Marlena Szeligowska, Déborah Benkort, Anna Przyborska, Mateusz Moskalik, Bernabé Moreno, Emilia Trudnowska, and Katarzyna Błachowiak-Samołyk
Biogeosciences, 21, 3617–3639, https://doi.org/10.5194/bg-21-3617-2024, https://doi.org/10.5194/bg-21-3617-2024, 2024
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The European Arctic is experiencing rapid regional warming, causing glaciers that terminate in the sea to retreat onto land. Due to this process, the area of a well-studied fjord, Hornsund, has increased by around 100 km2 (40%) since 1976. Combining satellite and in situ data with a mathematical model, we estimated that, despite some negative consequences of glacial meltwater release, such emerging coastal waters could mitigate climate change by increasing carbon uptake and storage by sediments.
Mallory C. Ringham, Nathan Hirtle, Cody Shaw, Xi Lu, Julian Herndon, Brendan R. Carter, and Matthew D. Eisaman
Biogeosciences, 21, 3551–3570, https://doi.org/10.5194/bg-21-3551-2024, https://doi.org/10.5194/bg-21-3551-2024, 2024
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Ocean alkalinity enhancement leverages the large surface area and carbon storage capacity of the oceans to store atmospheric CO2 as dissolved bicarbonate. We monitored CO2 uptake in seawater treated with NaOH to establish operational boundaries for carbon removal experiments. Results show that CO2 equilibration occurred on the order of weeks to months, was consistent with values expected from equilibration calculations, and was limited by mineral precipitation at high pH and CaCO3 saturation.
Riel Carlo O. Ingeniero, Gesa Schulz, and Hermann W. Bange
Biogeosciences, 21, 3425–3440, https://doi.org/10.5194/bg-21-3425-2024, https://doi.org/10.5194/bg-21-3425-2024, 2024
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Our research is the first to measure dissolved NO concentrations in temperate estuarine waters, providing insights into its distribution under varying conditions and enhancing our understanding of its production processes. Dissolved NO was supersaturated in the Elbe Estuary, indicating that it is a source of atmospheric NO. The observed distribution of dissolved NO most likely resulted from nitrification.
Celeste López-Abbate, John E. Garzón-Cardona, Ricardo Silva, Juan-Carlos Molinero, Laura A. Ruiz-Etcheverry, Ana M. Martínez, Azul S. Gilabert, and Rubén J. Lara
EGUsphere, https://doi.org/10.5194/egusphere-2024-1860, https://doi.org/10.5194/egusphere-2024-1860, 2024
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This study examines how microbial community structure, growth, and grazing impact the DOM pool in the Patagonian Shelf. Despite higher phytoplankton biomass, faster-growing bacteria were selectively grazed by protists leading to DOM accumulation, likely due to a reduction in DOM-consuming bacteria and the addition of egestion compounds. Experimental data showed that while bacteria remained as the primarily shapers of DOM quality, grazing pressure impacted on DOM accumulation.
Weiyi Tang, Jeff Talbott, Timothy Jones, and Bess B. Ward
Biogeosciences, 21, 3239–3250, https://doi.org/10.5194/bg-21-3239-2024, https://doi.org/10.5194/bg-21-3239-2024, 2024
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Wastewater treatment plants (WWTPs) are known to be hotspots of greenhouse gas emissions. However, the impact of WWTPs on the emission of the greenhouse gas N2O in downstream aquatic environments is less constrained. We found spatially and temporally variable but overall higher N2O concentrations and fluxes in waters downstream of WWTPs, pointing to the need for efficient N2O removal in addition to the treatment of nitrogen in WWTPs.
Daniel Müller, Bo Liu, Walter Geibert, Moritz Holtappels, Lasse Sander, Elda Miramontes, Heidi Taubner, Susann Henkel, Kai-Uwe Hinrichs, Denise Bethke, Ingrid Dohrmann, and Sabine Kasten
EGUsphere, https://doi.org/10.5194/egusphere-2024-1632, https://doi.org/10.5194/egusphere-2024-1632, 2024
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Coastal and shelf sediments are the most important sinks for organic carbon (OC) on Earth. We produced a new high-resolution sediment and pore-water dataset from the Helgoland Mud Area (HMA), North Sea, to determine, which depositional factors control the preservation of OC. The burial efficiency is highest in an area of high sedimentation and terrigenous OC. The HMA covers 0.09 % of the North Sea, but accounts for 0.76 % of its OC accumulation, highlighting the importance of the depocentre.
Deep S. Banerjee and Jozef Skakala
EGUsphere, https://doi.org/10.22541/essoar.171405637.76928549/v1, https://doi.org/10.22541/essoar.171405637.76928549/v1, 2024
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Nitrate is a crucial nutrient in oceans. Excess nutrients can trigger uncontrolled algae growth (eutrophication), damaging marine ecosystems. We used a machine learning tool to generate a skilled, gap-free, bi-decadal surface nitrate dataset from sparse observations. This dataset reveals areas on the North West European Shelf at risk of eutrophication, bi-decadal trends in coastal nitrate, and an impact of winter nitrate on spring phytoplankton blooms.
Amanda Y. L. Cheong, Kogila Vani Annammala, Ee Ling Yong, Yongli Zhou, Robert S. Nichols, and Patrick Martin
Biogeosciences, 21, 2955–2971, https://doi.org/10.5194/bg-21-2955-2024, https://doi.org/10.5194/bg-21-2955-2024, 2024
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We measured nutrients and dissolved organic matter for 1 year in a eutrophic tropical estuary to understand their sources and cycling. Our data show that the dissolved organic matter originates partly from land and partly from microbial processes in the water. Internal recycling is likely important for maintaining high nutrient concentrations, and we found that there is often excess nitrogen compared to silicon and phosphorus. Our data help to explain how eutrophication persists in this system.
Darren Pilcher, Jessica Cross, Natalie Monacci, Linquan Mu, Kelly Kearney, Albert Hermann, and Wei Cheng
EGUsphere, https://doi.org/10.5194/egusphere-2024-1096, https://doi.org/10.5194/egusphere-2024-1096, 2024
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The Bering Sea shelf is a highly productive marine ecosystem that is vulnerable to ocean acidification. We use a computational model to simulate the carbon cycle and acidification rates from 1970–2022. The results suggest that bottom water acidification rates are more than twice as great as surface rates. Bottom waters are also naturally more acidic, thus these waters will pass key thresholds known to negatively impact marine organisms, such as red king crab, much sooner than surface waters.
Aaron Ferderer, Kai G. Schulz, Ulf Riebesell, Kirralee G. Baker, Zanna Chase, and Lennart T. Bach
Biogeosciences, 21, 2777–2794, https://doi.org/10.5194/bg-21-2777-2024, https://doi.org/10.5194/bg-21-2777-2024, 2024
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Ocean alkalinity enhancement (OAE) is a promising method of atmospheric carbon removal; however, its ecological impacts remain largely unknown. We assessed the effects of simulated silicate- and calcium-based mineral OAE on diatom silicification. We found that increased silicate concentrations from silicate-based OAE increased diatom silicification. In contrast, the enhancement of alkalinity had no effect on community silicification and minimal effects on the silicification of different genera.
David González-Santana, María Segovia, Melchor González-Dávila, Librada Ramírez, Aridane G. González, Leonardo J. Pozzo-Pirotta, Veronica Arnone, Victor Vázquez, Ulf Riebesell, and J. Magdalena Santana-Casiano
Biogeosciences, 21, 2705–2715, https://doi.org/10.5194/bg-21-2705-2024, https://doi.org/10.5194/bg-21-2705-2024, 2024
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In a recent experiment off the coast of Gran Canaria (Spain), scientists explored a method called ocean alkalinization enhancement (OAE), where carbonate minerals were added to seawater. This process changed the levels of certain ions in the water, affecting its pH and buffering capacity. The researchers were particularly interested in how this could impact the levels of essential trace metals in the water.
Lucas Porz, Wenyan Zhang, Nils Christiansen, Jan Kossack, Ute Daewel, and Corinna Schrum
Biogeosciences, 21, 2547–2570, https://doi.org/10.5194/bg-21-2547-2024, https://doi.org/10.5194/bg-21-2547-2024, 2024
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Seafloor sediments store a large amount of carbon, helping to naturally regulate Earth's climate. If disturbed, some sediment particles can turn into CO2, but this effect is not well understood. Using computer simulations, we found that bottom-contacting fishing gears release about 1 million tons of CO2 per year in the North Sea, one of the most heavily fished regions globally. We show how protecting certain areas could reduce these emissions while also benefitting seafloor-living animals.
Jiaying A. Guo, Robert F. Strzepek, Kerrie M. Swadling, Ashley T. Townsend, and Lennart T. Bach
Biogeosciences, 21, 2335–2354, https://doi.org/10.5194/bg-21-2335-2024, https://doi.org/10.5194/bg-21-2335-2024, 2024
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Ocean alkalinity enhancement aims to increase atmospheric CO2 sequestration by adding alkaline materials to the ocean. We assessed the environmental effects of olivine and steel slag powder on coastal plankton. Overall, slag is more efficient than olivine in releasing total alkalinity and, thus, in its ability to sequester CO2. Slag also had less environmental effect on the enclosed plankton communities when considering its higher CO2 removal potential based on this 3-week experiment.
Giovanni Galli, Sarah Wakelin, James Harle, Jason Holt, and Yuri Artioli
Biogeosciences, 21, 2143–2158, https://doi.org/10.5194/bg-21-2143-2024, https://doi.org/10.5194/bg-21-2143-2024, 2024
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This work shows that, under a high-emission scenario, oxygen concentration in deep water of parts of the North Sea and Celtic Sea can become critically low (hypoxia) towards the end of this century. The extent and frequency of hypoxia depends on the intensity of climate change projected by different climate models. This is the result of a complex combination of factors like warming, increase in stratification, changes in the currents and changes in biological processes.
Sandy E. Tenorio and Laura Farías
Biogeosciences, 21, 2029–2050, https://doi.org/10.5194/bg-21-2029-2024, https://doi.org/10.5194/bg-21-2029-2024, 2024
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Time series studies show that CH4 is highly dynamic on the coastal ocean surface and planktonic communities are linked to CH4 accumulation, as found in coastal upwelling off Chile. We have identified the crucial role of picoplankton (> 3 µm) in CH4 recycling, especially with the addition of methylated substrates (trimethylamine and methylphosphonic acid) during upwelling and non-upwelling periods. These insights improve understanding of surface ocean CH4 recycling, aiding CH4 emission estimates.
Charlotte A. J. Williams, Tom Hull, Jan Kaiser, Claire Mahaffey, Naomi Greenwood, Matthew Toberman, and Matthew R. Palmer
Biogeosciences, 21, 1961–1971, https://doi.org/10.5194/bg-21-1961-2024, https://doi.org/10.5194/bg-21-1961-2024, 2024
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Oxygen (O2) is a key indicator of ocean health. The risk of O2 loss in the productive coastal/continental slope regions is increasing. Autonomous underwater vehicles equipped with O2 optodes provide lots of data but have problems resolving strong vertical O2 changes. Here we show how to overcome this and calculate how much O2 is supplied to the low-O2 bottom waters via mixing. Bursts in mixing supply nearly all of the O2 to bottom waters in autumn, stopping them reaching ecologically low levels.
Sabine Schmidt and Ibrahima Iris Diallo
Biogeosciences, 21, 1785–1800, https://doi.org/10.5194/bg-21-1785-2024, https://doi.org/10.5194/bg-21-1785-2024, 2024
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Along the French coast facing the Bay of Biscay, the large Gironde and Loire estuaries suffer from hypoxia. This prompted a study of the small Charente estuary located between them. This work reveals a minimum oxygen zone in the Charente estuary, which extends for about 25 km. Temperature is the main factor controlling the hypoxia. This calls for the monitoring of small turbid macrotidal estuaries that are vulnerable to hypoxia, a risk expected to increase with global warming.
Simone R. Alin, Jan A. Newton, Richard A. Feely, Samantha Siedlecki, and Dana Greeley
Biogeosciences, 21, 1639–1673, https://doi.org/10.5194/bg-21-1639-2024, https://doi.org/10.5194/bg-21-1639-2024, 2024
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We provide a new multi-stressor data product that allows us to characterize the seasonality of temperature, O2, and CO2 in the southern Salish Sea and delivers insights into the impacts of major marine heatwave and precipitation anomalies on regional ocean acidification and hypoxia. We also describe the present-day frequencies of temperature, O2, and ocean acidification conditions that cross thresholds of sensitive regional species that are economically or ecologically important.
Pamela Linford, Iván Pérez-Santos, Paulina Montero, Patricio A. Díaz, Claudia Aracena, Elías Pinilla, Facundo Barrera, Manuel Castillo, Aida Alvera-Azcárate, Mónica Alvarado, Gabriel Soto, Cécile Pujol, Camila Schwerter, Sara Arenas-Uribe, Pilar Navarro, Guido Mancilla-Gutiérrez, Robinson Altamirano, Javiera San Martín, and Camila Soto-Riquelme
Biogeosciences, 21, 1433–1459, https://doi.org/10.5194/bg-21-1433-2024, https://doi.org/10.5194/bg-21-1433-2024, 2024
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The Patagonian fjords comprise a world region where low-oxygen water and hypoxia conditions are observed. An in situ dataset was used to quantify the mechanism involved in the presence of these conditions in northern Patagonian fjords. Water mass analysis confirmed the contribution of Equatorial Subsurface Water in the advection of the low-oxygen water, and hypoxic conditions occurred when the community respiration rate exceeded the gross primary production.
Ting Wang, Buyun Du, Inke Forbrich, Jun Zhou, Joshua Polen, Elsie M. Sunderland, Prentiss H. Balcom, Celia Chen, and Daniel Obrist
Biogeosciences, 21, 1461–1476, https://doi.org/10.5194/bg-21-1461-2024, https://doi.org/10.5194/bg-21-1461-2024, 2024
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The strong seasonal increases of Hg in aboveground biomass during the growing season and the lack of changes observed after senescence in this salt marsh ecosystem suggest physiologically controlled Hg uptake pathways. The Hg sources found in marsh aboveground tissues originate from a mix of sources, unlike terrestrial ecosystems, where atmospheric GEM is the main source. Belowground plant tissues mostly take up Hg from soils. Overall, the salt marsh currently serves as a small net Hg sink.
Eleanor Simpson, Debby Ianson, Karen E. Kohfeld, Ana C. Franco, Paul A. Covert, Marty Davelaar, and Yves Perreault
Biogeosciences, 21, 1323–1353, https://doi.org/10.5194/bg-21-1323-2024, https://doi.org/10.5194/bg-21-1323-2024, 2024
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Shellfish aquaculture operates in nearshore areas where data on ocean acidification parameters are limited. We show daily and seasonal variability in pH and saturation states of calcium carbonate at nearshore aquaculture sites in British Columbia, Canada, and determine the contributing drivers of this variability. We find that nearshore locations have greater variability than open waters and that the uptake of carbon by phytoplankton is the major driver of pH and saturation state variability.
S. Alejandra Castillo Cieza, Rachel H. R. Stanley, Pierre Marrec, Diana N. Fontaine, E. Taylor Crockford, Dennis J. McGillicuddy Jr., Arshia Mehta, Susanne Menden-Deuer, Emily E. Peacock, Tatiana A. Rynearson, Zoe O. Sandwith, Weifeng Zhang, and Heidi M. Sosik
Biogeosciences, 21, 1235–1257, https://doi.org/10.5194/bg-21-1235-2024, https://doi.org/10.5194/bg-21-1235-2024, 2024
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The coastal ocean in the northeastern USA provides many services, including fisheries and habitats for threatened species. In summer 2019, a bloom occurred of a large unusual phytoplankton, the diatom Hemiaulus, with nitrogen-fixing symbionts. This led to vast changes in productivity and grazing rates in the ecosystem. This work shows that the emergence of one species can have profound effects on ecosystem function. Such changes may become more prevalent as the ocean warms due to climate change.
Claudine Hauri, Brita Irving, Sam Dupont, Rémi Pagés, Donna D. W. Hauser, and Seth L. Danielson
Biogeosciences, 21, 1135–1159, https://doi.org/10.5194/bg-21-1135-2024, https://doi.org/10.5194/bg-21-1135-2024, 2024
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Arctic marine ecosystems are highly susceptible to impacts of climate change and ocean acidification. We present pH and pCO2 time series (2016–2020) from the Chukchi Ecosystem Observatory and analyze the drivers of the current conditions to get a better understanding of how climate change and ocean acidification could affect the ecological niches of organisms.
William Hiles, Lucy C. Miller, Craig Smeaton, and William E. N. Austin
Biogeosciences, 21, 929–948, https://doi.org/10.5194/bg-21-929-2024, https://doi.org/10.5194/bg-21-929-2024, 2024
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Saltmarsh soils may help to limit the rate of climate change by storing carbon. To understand their impacts, they must be accurately mapped. We use drone data to estimate the size of three saltmarshes in NE Scotland. We find that drone imagery, combined with tidal data, can reliably inform our understanding of saltmarsh size. When compared with previous work using vegetation communities, we find that our most reliable new estimates of stored carbon are 15–20 % smaller than previously estimated.
De'Marcus Robinson, Anh L. D. Pham, David J. Yousavich, Felix Janssen, Frank Wenzhöfer, Eleanor C. Arrington, Kelsey M. Gosselin, Marco Sandoval-Belmar, Matthew Mar, David L. Valentine, Daniele Bianchi, and Tina Treude
Biogeosciences, 21, 773–788, https://doi.org/10.5194/bg-21-773-2024, https://doi.org/10.5194/bg-21-773-2024, 2024
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The present study suggests that high release of ferrous iron from the seafloor of the oxygen-deficient Santa Barabara Basin (California) supports surface primary productivity, creating positive feedback on seafloor iron release by enhancing low-oxygen conditions in the basin.
David J. Yousavich, De'Marcus Robinson, Xuefeng Peng, Sebastian J. E. Krause, Frank Wenzhöfer, Felix Janssen, Na Liu, Jonathan Tarn, Franklin Kinnaman, David L. Valentine, and Tina Treude
Biogeosciences, 21, 789–809, https://doi.org/10.5194/bg-21-789-2024, https://doi.org/10.5194/bg-21-789-2024, 2024
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Declining oxygen (O2) concentrations in coastal oceans can threaten people’s ways of life and food supplies. Here, we investigate how mats of bacteria that proliferate on the seafloor of the Santa Barbara Basin sustain and potentially worsen these O2 depletion events through their unique chemoautotrophic metabolism. Our study shows how changes in seafloor microbiology and geochemistry brought on by declining O2 concentrations can help these mats grow as well as how that growth affects the basin.
Krysten Rutherford, Katja Fennel, Lina Garcia Suarez, and Jasmin G. John
Biogeosciences, 21, 301–314, https://doi.org/10.5194/bg-21-301-2024, https://doi.org/10.5194/bg-21-301-2024, 2024
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We downscaled two mid-century (~2075) ocean model projections to a high-resolution regional ocean model of the northwest North Atlantic (NA) shelf. In one projection, the NA shelf break current practically disappears; in the other it remains almost unchanged. This leads to a wide range of possible future shelf properties. More accurate projections of coastal circulation features would narrow the range of possible outcomes of biogeochemical projections for shelf regions.
Lennart Thomas Bach
Biogeosciences, 21, 261–277, https://doi.org/10.5194/bg-21-261-2024, https://doi.org/10.5194/bg-21-261-2024, 2024
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Ocean alkalinity enhancement (OAE) is a widely considered marine carbon dioxide removal method. OAE aims to accelerate chemical rock weathering, which is a natural process that slowly sequesters atmospheric carbon dioxide. This study shows that the addition of anthropogenic alkalinity via OAE can reduce the natural release of alkalinity and, therefore, reduce the efficiency of OAE for climate mitigation. However, the additionality problem could be mitigated via a variety of activities.
Tsuneo Ono, Daisuke Muraoka, Masahiro Hayashi, Makiko Yorifuji, Akihiro Dazai, Shigeyuki Omoto, Takehiro Tanaka, Tomohiro Okamura, Goh Onitsuka, Kenji Sudo, Masahiko Fujii, Ryuji Hamanoue, and Masahide Wakita
Biogeosciences, 21, 177–199, https://doi.org/10.5194/bg-21-177-2024, https://doi.org/10.5194/bg-21-177-2024, 2024
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We carried out parallel year-round observations of pH and related parameters in five stations around the Japan coast. It was found that short-term acidified situations with Omega_ar less than 1.5 occurred at four of five stations. Most of such short-term acidified events were related to the short-term low salinity event, and the extent of short-term pH drawdown at high freshwater input was positively correlated with the nutrient concentration of the main rivers that flow into the coastal area.
K. Mareike Paul, Martijn Hermans, Sami A. Jokinen, Inda Brinkmann, Helena L. Filipsson, and Tom Jilbert
Biogeosciences, 20, 5003–5028, https://doi.org/10.5194/bg-20-5003-2023, https://doi.org/10.5194/bg-20-5003-2023, 2023
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Seawater naturally contains trace metals such as Mo and U, which accumulate under low oxygen conditions on the seafloor. Previous studies have used sediment Mo and U contents as an archive of changing oxygen concentrations in coastal waters. Here we show that in fjords the use of Mo and U for this purpose may be impaired by additional processes. Our findings have implications for the reliable use of Mo and U to reconstruct oxygen changes in fjords.
Hannah Sharpe, Michel Gosselin, Catherine Lalande, Alexandre Normandeau, Jean-Carlos Montero-Serrano, Khouloud Baccara, Daniel Bourgault, Owen Sherwood, and Audrey Limoges
Biogeosciences, 20, 4981–5001, https://doi.org/10.5194/bg-20-4981-2023, https://doi.org/10.5194/bg-20-4981-2023, 2023
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We studied the impact of submarine canyon processes within the Pointe-des-Monts system on biogenic matter export and phytoplankton assemblages. Using data from three oceanographic moorings, we show that the canyon experienced two low-amplitude sediment remobilization events in 2020–2021 that led to enhanced particle fluxes in the deep-water column layer > 2.6 km offshore. Sinking phytoplankton fluxes were lower near the canyon compared to background values from the lower St. Lawrence Estuary.
Dewi Langlet, Florian Mermillod-Blondin, Noémie Deldicq, Arthur Bauville, Gwendoline Duong, Lara Konecny, Mylène Hugoni, Lionel Denis, and Vincent M. P. Bouchet
Biogeosciences, 20, 4875–4891, https://doi.org/10.5194/bg-20-4875-2023, https://doi.org/10.5194/bg-20-4875-2023, 2023
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Benthic foraminifera are single-cell marine organisms which can move in the sediment column. They were previously reported to horizontally and vertically transport sediment particles, yet the impact of their motion on the dissolved fluxes remains unknown. Using microprofiling, we show here that foraminiferal burrow formation increases the oxygen penetration depth in the sediment, leading to a change in the structure of the prokaryotic community.
Masahiko Fujii, Ryuji Hamanoue, Lawrence Patrick Cases Bernardo, Tsuneo Ono, Akihiro Dazai, Shigeyuki Oomoto, Masahide Wakita, and Takehiro Tanaka
Biogeosciences, 20, 4527–4549, https://doi.org/10.5194/bg-20-4527-2023, https://doi.org/10.5194/bg-20-4527-2023, 2023
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This is the first study of the current and future impacts of climate change on Pacific oyster farming in Japan. Future coastal warming and acidification may affect oyster larvae as a result of longer exposure to lower-pH waters. A prolonged spawning period may harm oyster processing by shortening the shipping period and reducing oyster quality. To minimize impacts on Pacific oyster farming, in addition to mitigation measures, local adaptation measures may be required.
Cited articles
Albright, R., Langdon, C., and Anthony, K. R. N.: Dynamics of seawater carbonate chemistry, production, and calcification of a coral reef flat, central Great Barrier Reef, Biogeosciences, 10, 6747–6758, https://doi.org/10.5194/bg-10-6747-2013, 2013.
Almahasheer, H., Aljowair, A., Duarte, C. M., and Irigoien, X.: Decadal
stability of Red Sea mangroves, Estuar. Coast. Shelf S., 169,
164–172, https://doi.org/10.1016/j.ecss.2015.11.027, 2016.
Anderson, L. and Dyrssen, D.: Alkalinity and total carbonate in the Arabian
Sea. Carbonate depletion in the Red Sea and Persian Gulf, Mar. Chem.,
47, 195–202, https://doi.org/10.1016/0304-4203(94)90019-1,
1994.
Anton, A., Baldry, K., Coker, D., and Duarte, C. M.: Thermal optima and
drivers of the low meetabolic rates of seagrass meadows in the Red Sea,
Frontiers in Marine Science, in review, 2020.
Baldry, K., Saderne, V., McCorkle, D. C., Churchill, J. H., Agustí, S., and Duarte, C. M.: Surface Carbonate Chemistry of the Red Sea (offshore and coastal), PANGAEA, https://doi.org/10.1594/PANGAEA.899850, 2019.
Barrón, C., Duarte, C. M., Frankignoulle, M., and Borges, A. V.: Organic
carbon metabolism and carbonate dynamics in a Mediterranean seagrass
(Posidonia oceanica), meadow, Estuar. Coast., 29, 417–426,
https://doi.org/10.1007/BF02784990, 2006.
Bauer, J. E., Cai, W.-J., Raymond, P. A., Bianchi, T. S., Hopkinson, C. S.,
and Regnier, P. A.: The changing carbon cycle of the coastal ocean, Nature,
504, 61–70, https://doi.org/10.1038/nature12857, 2013.
Bouillon, S., Middelburg, J. J., Dehairs, F., Borges, A. V., Abril, G., Flindt, M. R., Ulomi, S., and Kristensen, E.: Importance of intertidal sediment processes and porewater exchange on the water column biogeochemistry in a pristine mangrove creek (Ras Dege, Tanzania), Biogeosciences, 4, 311–322, https://doi.org/10.5194/bg-4-311-2007, 2007.
Bouillon, S., Borges, A. V., Castañeda-Moya, E., Diele, K., Dittmar, T.,
Duke, N. C., Kristensen, E., Lee, S. Y., Marchand, C., and Middelburg, J.
J.: Mangrove production and carbon sinks: a revision of global budget
estimates, Global Biogeochem. Cy., 22, GB2013,
https://doi.org/10.1029/2007GB003052, 2008.
Borges, A. V., Djenidi, S., Lacroix, G., Théate, J., Delille, B., and
Frankignoulle, M.: Atmospheric CO2 flux from mangrove surrounding waters,
Geophys. Res. Lett., 30, 1558, https://doi.org/10.1029/2003gl017143, 2003.
Burdige, D. J. and Zimmerman, R. C.: Impact of sea grass density on
carbonate dissolution in Bahamian sediments, Limnol. Oceanogr.,
47, 1751–1763, https://doi.org/10.4319/lo.2002.47.6.1751, 2002.
Burkholz, C., Duarte, C. M., and Garcias-Bonet, N.: Thermal dependence of
seagrass ecosystem metabolism in the Red Sea, Mar. Ecol.-Prog.
Ser., 614, 79–90, 2019.
Camp, E. F., Suggett, D. J., Gendron, G., Jompa, J., Manfrino, C., and
Smith, D. J.: Mangrove and Seagrass Beds Provide Different Biogeochemical
Services for Corals Threatened by Climate Change, Front. Mar.
Sci., 3, 1–16, https://doi.org/10.3389/fmars.2016.00052, 2016.
Cantin, N. E., Cohen, A. L., Karnauskas, K. B., Tarrant, A. M., and
McCorkle, D. C.: Ocean warming slows coral growth in the central Red
Sea, Science, 329, 322–325, https://doi.org/10.1126/science.1190182, 2010.
Chaidez, V., Dreano, D., Agusti, S., Duarte, C. M., and Hoteit, I.: Decadal
trends in Red Sea maximum surface temperature, Sci. Rep.-UK, 7,
1–8, https://doi.org/10.1038/s41598-017-08146-z, 2017.
Challener, R. C., Robbins, L. L., and McClintock, J. B.: Variability of the
carbonate chemistry in a shallow, seagrass-dominated ecosystem: implications
for ocean acidification experiments, Mar. Freshwater Res., 67,
163–172, https://doi.org/10.1071/MF14219, 2016.
Churchill, J. H., Bower, A. S., McCorkle, D. C., and Abualnaja, Y.: The
transport of nutrient-rich Indian Ocean water through the Red Sea and into
coastal reef systems, J. Mar. Res., 72, 165–181,
https://doi.org/10.1357/002224014814901994, 2014.
Cook, R. D. and Weisberg, S.: Graphics for assessing the adequacy of
regression models, J. Am. Stat. Assoc., 92,
490–499, https://doi.org/10.2307/2965698, 1997.
Cyronak, T., Andersson, A. J., Langdon, C., Albright, R., Bates, N. R.,
Caldeira, K., Carlton, R., Corredor, J. E., Dunbar, R. B., and Enochs, I.:
Taking the metabolic pulse of the world's coral reefs, PloS One, 13,
e0190872, https://doi.org/10.1371/journal.pone.0190872, 2018.
de Vries, A. J., Tyrlis, E., Edry, D., Krichak, S. O., Steil, B., and
Lelieveld, J.: Extreme precipitation events in the Middle East: Dynamics of
the Active Red Sea Trough, J. Geophys. Res.-Atmos.,
118, 7087–7108, https://doi.org/10.1002/jgrd.50569, 2013.
Dickson, A. G., Sabine, C. L., and Christian, J. R.: Guide to best practices
for ocean CO2 measurements, PICED Special Publication 3, IOCCP Report No. 8, North Pacific Marine Science Organization, Sidney,
Canada, 2007.
Doney, S. C.: The growing human footprint on coastal and open-ocean
biogeochemistry, Science, 328, 1512–1516, https://doi.org/10.1126/science.1185198,
2010.
Duarte, C. M., Hendriks, I. E., Moore, T. S., Olsen, Y. S., Steckbauer, A.,
Ramajo, L., Carstensen, J., Trotter, J. A., and McCulloch, M.: Is ocean
acidification an open-ocean syndrome? Understanding anthropogenic impacts on
seawater pH, Estuar. Coast., 36, 221–236,
https://doi.org/10.1007/s12237-013-9594-3, 2013.
Forsythe, G. E., Malcolm, M. A., and Moler, C. B.: Computer Methods for
Mathematical Computations, Prentice Hall Professional Technical Reference, Wiley,
259 pp., 1977.
Gattuso, J.-P., Frankignoulle, M., and Wollast, R.: Carbon and Carbonate
Metabolism in Coastal Aquatic Ecosystems, Annu. Rev. Ecol.
Syst., 29, 405–434, https://doi.org/10.1146/annurev.ecolsys.29.1.405, 1998.
Gattuso, J.-P., Allemand, D., and Frankignoulle, M.: Photosynthesis and
calcification at cellular, organismal and community levels in coral reefs: a
review on interactions and control by carbonate chemistry, Am.
Zool., 39, 160–183, https://doi.org/10.1093/icb/39.1.160, 1999.
Gattuso, J.-P., Epitalon, J.-M., Lavigne, H., and Orr, J.: seacarb: Seawater
Carbonate Chemistry, R package version 3.2.6, available at: https://CRAN.R-project.org/package=seacarb (last access: 3 May 2019), 2018.
Giraud, X., Le Quéré, C., and Da Cunha, L. C.: Importance of coastal
nutrient supply for global ocean biogeochemistry, Global Biogeochem.
Cy., 22, GB2025, https://doi.org/10.1029/2006GB002717, 2008.
Guannel, G., Arkema, K., Ruggiero, P., and Verutes, G.: The power of three:
coral reefs, seagrasses and mangroves protect coastal regions and increase
their resilience, PloS one, 11, e0158094,
https://doi.org/10.1371/journal.pone.0158094, 2016.
Hijmans, R. J.: geosphere: Spherical Trigonometry, R package version 1.5-7, available at:
https://CRAN.R-project.org/package=geosphere (last access: 14 May 2018),
2017.
Ho, D. T., Ferrón, S., Engel, V. C., Larsen, L. G., and Barr, J. G.:
Air-water gas exchange and CO2 flux in a mangrove-dominated estuary,
Geophys. Res. Lett., 41, 108–113, https://doi.org/10.1002/2013gl058785, 2014.
Hughes, T. P., Anderson, K. D., Connolly, S. R., Heron, S. F., Kerry, J. T.,
Lough, J. M., Baird, A. H., Baum, J. K., Berumen, M. L., Bridge, T. C.,
Claar, D. C., Eakin, C. M., Gilmour, J. P., Graham, N. A. J., Harrison, H.,
Hobbs, J.-P. A., Hoey, A. S., Hoogenboom, M., Lowe, R. J., McCulloch, M. T.,
Pandolfi, J. M., Pratchett, M., Schoepf, V., Torda, G., and Wilson, S. K.:
Spatial and temporal patterns of mass bleaching of corals in the
Anthropocene, Science, 359, 80–83, https://doi.org/10.1126/science.aan8048,
2018.
Hydes, D., Jiang, Z., Hartman, M., Campbell, J., Pagnani, M., and
Kelly-Gerreyn, B.: Surface DIC and TALK measurements along the M/V Pacific
Celebes VOS Line during the 2007–2012 cruises, Carbon Dioxide Information
Analysis Center. Oak Ridge National Laboratory, US Department of Energy, Oak
Ridge, Tennessee, https://doi.org/10.3334/CDIAC/OTG.VOS_PC_2007-2012, 2012.
IPCC: Climate change 2013: The physical science basis: Working Group I
contribution to the Fifth assessment report of the Intergovernmental Panel
on Climate Change: Cambridge University Press, Cambridge, UK,
https://doi.org/10.1017/CBO9781107415324, 2014.
Jiang, Z. P., Tyrrell, T., Hydes, D. J., Dai, M., and Hartman, S. E.:
Variability of alkalinity and the alkalinity-salinity relationship in the
tropical and subtropical surface ocean, Global Biogeochem. Cy., 28,
729–742, https://doi.org/10.1002/2013GB004678, 2014.
Kenworthy, W. J., Wyllie-Echeverria, S., Coles, R. G., Pergent, G., and
Pergent-Martini, C.: Seagrass conservation biology: an interdisciplinary
science for protection of the seagrass biome, in: Seagrasses: Biology,
Ecology and Conservation, Springer, Dordrecht, 595–623,
https://doi.org/10.1007/978-1-4020-2983-7_25, 2007.
Kleypas, J. A., Anthony, K. R., and Gattuso, J. P.: Coral reefs modify their
seawater carbon chemistry–case study from a barrier reef (Moorea, French
Polynesia), Glob. Change Biol., 17, 3667–3678,
https://doi.org/10.1111/j.1365-2486.2011.02530.x, 2011.
Krumgalz, B., Erez, J., and Chen, C.: Anthropogenic CO2 penetration in the
northern Red Sea and in the Gulf of Elat (Aqaba), Oceanol. Acta, 13,
283–290, 1990.
Krumins, V., Gehlen, M., Arndt, S., Van Cappellen, P., and Regnier, P.: Dissolved inorganic carbon and alkalinity fluxes from coastal marine sediments: model estimates for different shelf environments and sensitivity to global change, Biogeosciences, 10, 371–398, https://doi.org/10.5194/bg-10-371-2013, 2013.
Lyons, T. W., Walter, L. M., Gellatly, A. M., Martini, A. M., and Blake, R.
E.: Sites of anomalous organic remineralization in the carbonate sediments
of South Florida, USA: the sulfur cycle and carbonate-associated sulfate,
Geol. S. Am. S., 379, 161–176,
https://doi.org/10.1130/0-8137-2379-5.161, 2004.
Macklin, P. A., Suryaputra, I. G. N. A., Maher, D. T., Murdiyarso, D., and
Santos, I. R.: Drivers of CO2 along a mangrove-seagrass transect in a
tropical bay: Delayed groundwater seepage and seagrass uptake, Cont.
Shelf Res., 172, 57–67, https://doi.org/10.1016/j.csr.2018.10.008, 2019.
Macreadie, P. I., Serrano, O., Maher, D. T., Duarte, C. M., and Beardall,
J.: Addressing calcium carbonate cycling in blue carbon accounting,
Limnol. Oceanogr. Lett., 2, 195–201, https://doi.org/10.1002/lol2.10052,
2017.
Mair, P. and Wilcox, R.: WRS2: Wilcox robust estimation and Testing, R
package ver 3.4.4, available at: https://cran.r-project.org/web/packages/WRS2/index.html, last access: 1 October 2018.
Meister, P.: Two opposing effects of sulfate reduction on carbonate precipitation in normal marine, hypersaline, and alkaline environments, Geology, 41, 499–502, 2013.
Middelburg, J. J., Nieuwenhuize, J., Slim, F. J., and Ohowa, B.: Sediment biogeochemistry in an East African mangrove forest (Gazi bay, Kenya), Biogeochemistry, 34, 133–155, 1996.
Millero, F. J.: Carbonate constants for estuarine waters, Mar. Freshwater Res., 61, 139–142, https://doi.org/10.1071/MF09254, 2010.
Osman, E. O., Smith, D. J., Ziegler, M., Kürten, B., Conrad, C.,
El-Haddad, K. M., Voolstra, C. R. and Suggett, D. J.: Thermal refugia against
coral bleaching throughout the northern Red Sea, Glob. Change
Biol., 24, e474–e484, https://doi.org/10.1111/gcb.13895, 2018.
Papaud, A. and Poisson, A.: Distribution of dissolved CO2 in the Red Sea
and correlations with other geochemical tracers, J. Mar. Res.,
44, 385–402, https://doi.org/10.1357/002224086788405347, 1986.
Picheral, M., Searson, S., Taillandier, V., Bricaud, A., Boss, E., Ras, J.,
Claustre, H., Ouhssain, M., Morin, P., Tremblay, J., Coppola, L., Gattuso,
J., Metzl, N., Thuillier, D., Gorsky, G., Tara Oceans Consortium
(Coordinators), and Tara Oceans Expedition (Participants): Vertical profiles
of environmental parameters measured on discrete water samples collected
with Niskin bottles during the Tara Oceans expedition 2009–2013, PANGAEA,
https://doi.org/10.1594/PANGAEA.836319, 2014.
Qurban, M. A. B., Karuppasamy, M., Krishnakumar, P. K., Garcias-Bonet, N.,
and Duarte, C. M.: Seagrass Distribution, Composition and Abundance Along
the Saudi Arabian Coast of Red Sea, in: Oceanographic and Biological Aspects
of the Red Sea, edited by: Rasul, N. M. A., and Stewart, I. C. F., Springer,
Cham, 367–385, https://doi.org/10.1007/978-3-319-99417-8_20, 2019.
R Core Team: R v3.4.3, Vienna, Austria, https://www.R-project.org/, last access: 8 March 2018.
Robbins, P. E.: Oceanic carbon transport carried by freshwater divergence:
Are salinity normalizations useful?, J. Geophys. Res.-Oceans, 106, 30939–30946, https://doi.org/10.1029/2000JC000451, 2001.
Saderne, V., Baldry, K., Anton, A., Agustí, S., and Duarte, C. M.: Characterization of the CO2 system in a coral reef, a seagrass meadow, and a mangrove forest in the central Red Sea, J. Geophys. Res.-Oceans, 124, 7513–7528, https://doi.org/10.1029/2019JC015266, 2019.
Sea, M. A., Garcias-Bonet, N., Saderne, V., and Duarte, C. M.: Carbon dioxide and methane fluxes at the air–sea interface of Red Sea mangroves, Biogeosciences, 15, 5365–5375, https://doi.org/10.5194/bg-15-5365-2018, 2018.
Sofianos, S. S. and Johns, W. E.: An oceanic general circulation model
(OGCM) investigation of the Red Sea circulation: 2. Three-dimensional
circulation in the Red Sea, J. Geophys. Res.-Oceans,
108, 3066, https://doi.org/10.1029/2001JC001185, 2003.
Steiner, Z., Erez, J., Shemesh, A., Yam, R., Katz, A., and Lazar, B.:
Basin-scale estimates of pelagic and coral reef calcification in the Red Sea
and Western Indian Ocean, P. Natl. Acad. Sci. USA,
111, 16303–16308, https://doi.org/10.1073/pnas.1414323111, 2014.
Steiner, Z., Turchyn, A. V., Harpaz, E., and Silverman, J.: Water chemistry
reveals a significant decline in coral calcification rates in the southern
Red Sea, Nat. Commun., 9, 3615, https://doi.org/10.1038/s41467-018-06030-6,
2018.
Takeshita, Y. T., Cyronak, T., Martz, T. R., Kindeberg, T., and Andersson,
A. J.: Coral reef carbonate chemistry variability at different functional
scales, Front. Mar. Sci., 5, 175, https://doi.org/10.3389/fmars.2018.00175,
2018.
Unsworth, R. K., Collier, C. J., Henderson, G. M., and McKenzie, L. J.:
Tropical seagrass meadows modify seawater carbon chemistry: implications for
coral reefs impacted by ocean acidification, Environ. Res. Lett.,
7, 024026, https://doi.org/10.1088/1748-9326/7/2/024026, 2012.
Wafar, M., Ashraf, M., Manikandan, K. P., Qurban, M. A., and Kattan, Y.:
Propagation of Gulf of Aden Intermediate Water (GAIW) in the Red Sea during
autumn and its importance to biological production, J. Marine
Syst., 154, 243–251, https://doi.org/10.1016/j.jmarsys.2015.10.016, 2016.
Wurgaft, E., Steiner, Z., Luz, B., and Lazar, B.: Evidence for inorganic
precipitation of CaCO3 on suspended solids in the open water of the Red Sea,
Mar. Chem., 186, 145–155, https://doi.org/10.1016/j.marchem.2016.09.006, 2016.
Zablocki, J. A., Andersson, A. J., and Bates, N. R.: Diel aquatic CO2
system dynamics of a Bermudian mangrove environment, Aquat. Geochem.,
17, 841, https://doi.org/10.1007/s10498-011-9142-3, 2011.
Zeebe, R. E. and Wolf-Gladrow, D. A.: CO2 in seawater: Equilibrium,
kinetics, isotopes, Elsevier Oceanography Series, 65, Elsevier, 1–136, 2001.
Zhan, P., Subramanian, A. C., Yao, F., and Hoteit, I.: Eddies in the Red
Sea: A statistical and dynamical study, J. Geophys. Res.-Oceans, 119, 3909–3925, https://doi.org/10.1002/2013JC009563, 2014.
Short summary
The carbon cycling of coastal ecosystems over large spatial scales is not well measured relative to the open ocean. In this study we measure the carbonate system in the three habitats, to measure ecosystem-driven changes compared to offshore waters. We find (1) 70 % of seagrass meadows and mangrove forests show large ecosystem-driven changes, and (2) mangrove forests show strong and consistent trends over large scales, while seagrass meadows display more variability.
The carbon cycling of coastal ecosystems over large spatial scales is not well measured relative...
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