Articles | Volume 10, issue 7
https://doi.org/10.5194/bg-10-4991-2013
© Author(s) 2013. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-10-4991-2013
© Author(s) 2013. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
24 Jul 2013
Research article |
| 24 Jul 2013
Si cycling in a forest biogeosystem – the importance of transient state biogenic Si pools
M. Sommer
Leibniz Centre for Agricultural Landscape Research (ZALF), Institute of Soil Landscape Research, Eberswalder Str. 84, 15374 Müncheberg, Germany
University of Potsdam, Institute of Earth and Environmental Sciences, Karl-Liebknecht-Str. 24–25, 14476 Potsdam, Germany
H. Jochheim
Leibniz Centre for Agricultural Landscape Research (ZALF), Institute of Landscape Systems Analysis, Eberswalder Str. 84, 15374 Müncheberg, Germany
A. Höhn
Leibniz Centre for Agricultural Landscape Research (ZALF), Institute of Soil Landscape Research, Eberswalder Str. 84, 15374 Müncheberg, Germany
J. Breuer
Landwirtschaftliches Technologiezentrum Augustenberg (LTZ), Referat 12, Neßlerstr. 23–32, 76227 Karlsruhe, Germany
Z. Zagorski
Department of Soil Environment Sciences, Warsaw University of Life Science (SGGW), Nowoursynowska 159, 02-776 Warsaw, Poland
J. Busse
Leibniz Centre for Agricultural Landscape Research (ZALF), Institute for Landscape Biogeochemistry, Eberswalder Str. 84, 15374 Müncheberg, Germany
D. Barkusky
Leibniz Centre for Agricultural Landscape Research (ZALF), Research Station Müncheberg, Eberswalder Str. 84, 15374 Müncheberg, Germany
K. Meier
Leibniz Centre for Agricultural Landscape Research (ZALF), Institute of Land Use Systems, Eberswalder Str. 84, 15374 Müncheberg, Germany
D. Puppe
Leibniz Centre for Agricultural Landscape Research (ZALF), Institute of Soil Landscape Research, Eberswalder Str. 84, 15374 Müncheberg, Germany
Brandenburg University of Technology Cottbus-Senftenberg, Chair General Ecology, 03013 Cottbus, Germany
M. Wanner
Brandenburg University of Technology Cottbus-Senftenberg, Chair General Ecology, 03013 Cottbus, Germany
D. Kaczorek
Leibniz Centre for Agricultural Landscape Research (ZALF), Institute of Soil Landscape Research, Eberswalder Str. 84, 15374 Müncheberg, Germany
Department of Soil Environment Sciences, Warsaw University of Life Science (SGGW), Nowoursynowska 159, 02-776 Warsaw, Poland
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Luis Alfredo Pires Barbosa, Martin Leue, Marc Wehrhan, and Michael Sommer
EGUsphere, https://doi.org/10.5194/egusphere-2025-746, https://doi.org/10.5194/egusphere-2025-746, 2025
This preprint is open for discussion and under review for Biogeosciences (BG).
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Healthy soils need plant biomass, especially roots, to function properly. Our study examined how different wheat varieties and soil erosion impact root growth and carbon storage. We found that tillage erosion significantly reduced total wheat biomass, while newer wheat varieties produced more grain but contributed less carbon to the soil. Simulations showed that modern varieties are more sensitive to dry conditions, highlighting a trade-off between higher yields and long-term soil health.
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Hydrol. Earth Syst. Sci., 27, 3851–3873, https://doi.org/10.5194/hess-27-3851-2023, https://doi.org/10.5194/hess-27-3851-2023, 2023
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Evapotranspiration (ET) plays a pivotal role in terrestrial water cycling, returning up to 90 % of precipitation to the atmosphere. We studied impacts of soil type and management on an agroecosystem using an automated system with modern modeling approaches. We modeled ET at high spatial and temporal resolution to highlight differences in heterogeneous soils on an hourly basis. Our results show significant differences in yield and smaller differences in ET overall, impacting water use efficiency.
Peter Stimmler, Mathias Goeckede, Bo Elberling, Susan Natali, Peter Kuhry, Nia Perron, Fabrice Lacroix, Gustaf Hugelius, Oliver Sonnentag, Jens Strauss, Christina Minions, Michael Sommer, and Jörg Schaller
Earth Syst. Sci. Data, 15, 1059–1075, https://doi.org/10.5194/essd-15-1059-2023, https://doi.org/10.5194/essd-15-1059-2023, 2023
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Arctic soils store large amounts of carbon and nutrients. The availability of nutrients, such as silicon, calcium, iron, aluminum, phosphorus, and amorphous silica, is crucial to understand future carbon fluxes in the Arctic. Here, we provide, for the first time, a unique dataset of the availability of the abovementioned nutrients for the different soil layers, including the currently frozen permafrost layer. We relate these data to several geographical and geological parameters.
Marc Wehrhan, Daniel Puppe, Danuta Kaczorek, and Michael Sommer
Biogeosciences, 18, 5163–5183, https://doi.org/10.5194/bg-18-5163-2021, https://doi.org/10.5194/bg-18-5163-2021, 2021
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UAS remote sensing provides a promising tool for new insights into Si biogeochemistry at catchment scale. Our study on an artificial catchment shows surprisingly high silicon stocks in the biomass of two grass species (C. epigejos, 7 g m−2; P. australis, 27 g m−2). The distribution of initial sediment properties (clay, Tiron-extractable Si, nitrogen, plant-available potassium) controlled the spatial distribution of C. epigejos. Soil wetness determined the occurrence of P. australis.
Daniel A. Frick, Rainer Remus, Michael Sommer, Jürgen Augustin, Danuta Kaczorek, and Friedhelm von Blanckenburg
Biogeosciences, 17, 6475–6490, https://doi.org/10.5194/bg-17-6475-2020, https://doi.org/10.5194/bg-17-6475-2020, 2020
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Silicon is taken up by some plants to increase structural stability and to develop stress resistance and is rejected by others. To explore the underlying mechanisms, we used the stable isotopes of silicon that shift in their relative abundance depending on the biochemical transformation involved. On species with a rejective (tomato, mustard) and active (wheat) uptake mechanism, grown in hydroculture, we found that the transport of silicic acid is controlled by the precipitation of biogenic opal.
Florian Wilken, Michael Ketterer, Sylvia Koszinski, Michael Sommer, and Peter Fiener
SOIL, 6, 549–564, https://doi.org/10.5194/soil-6-549-2020, https://doi.org/10.5194/soil-6-549-2020, 2020
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Soil redistribution by water and tillage erosion processes on arable land is a major threat to sustainable use of soil resources. We unravel the role of tillage and water erosion from fallout radionuclide (239+240Pu) activities in a ground moraine landscape. Our results show that tillage erosion dominates soil redistribution processes and has a major impact on the hydrological and sedimentological connectivity, which started before the onset of highly mechanised farming since the 1960s.
W. Marijn van der Meij, Arnaud J. A. M. Temme, Jakob Wallinga, and Michael Sommer
SOIL, 6, 337–358, https://doi.org/10.5194/soil-6-337-2020, https://doi.org/10.5194/soil-6-337-2020, 2020
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We developed a model to simulate long-term development of soils and landscapes under varying rainfall and land-use conditions to quantify the temporal variation of soil patterns. In natural landscapes, rainfall amount was the dominant factor influencing soil variation, while for agricultural landscapes, landscape position became the dominant factor due to tillage erosion. Our model shows potential for simulating past and future developments of soils in various landscapes and climates.
Jannis Groh, Jan Vanderborght, Thomas Pütz, Hans-Jörg Vogel, Ralf Gründling, Holger Rupp, Mehdi Rahmati, Michael Sommer, Harry Vereecken, and Horst H. Gerke
Hydrol. Earth Syst. Sci., 24, 1211–1225, https://doi.org/10.5194/hess-24-1211-2020, https://doi.org/10.5194/hess-24-1211-2020, 2020
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Biogeosciences, 14, 5239–5252, https://doi.org/10.5194/bg-14-5239-2017, https://doi.org/10.5194/bg-14-5239-2017, 2017
Short summary
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We quantified different biogenic Si pools in soils of a developing ecosystem and analyzed their influence on short-term changes of the water soluble Si fraction. From our results we concluded small (< 5 µm) and/or fragile phytogenic Si structures to have the biggest impact on short-term changes of water soluble Si. Analyses of these phytogenic Si structures are urgently needed in future as they seem to represent the most important driver of Si cycling in terrestrial biogeosystems in general.
Mathias Hoffmann, Nicole Jurisch, Juana Garcia Alba, Elisa Albiac Borraz, Marten Schmidt, Vytas Huth, Helmut Rogasik, Helene Rieckh, Gernot Verch, Michael Sommer, and Jürgen Augustin
Biogeosciences, 14, 1003–1019, https://doi.org/10.5194/bg-14-1003-2017, https://doi.org/10.5194/bg-14-1003-2017, 2017
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We present a suitable and reliable method to detect short-term and small-scale soil organic carbon stock dynamics (ΔSOC). Spatiotemporal dynamics of ΔSOC are determined for a 5-year study period at the experimental field trial
CarboZALFusing automatic chamber measurements of NEE and modeled NPPshoot. Results were compared against ΔSOC observed from repeated soil inventories. Both ∆SOC data sets corresponded well regarding their magnitude and spatial tendency.
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Atmos. Meas. Tech., 10, 109–118, https://doi.org/10.5194/amt-10-109-2017, https://doi.org/10.5194/amt-10-109-2017, 2017
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Processes driving production and transport of CH4 in wetlands are complex. We present an algorithm to separate open-water automatic chamber CH4 fluxes into diffusion and ebullition. This helps to reveal dynamics, identify drivers and obtain reliable CH4 emissions. The algorithm is based on sudden concentration changes during single measurements. A variable filter is applied using a multiple of the interquartile range. The algorithm was verified for data of a rewetted former fen grassland site.
W. Marijn van der Meij, Arnaud J. A. M. Temme, Christian M. F. J. J. de Kleijn, Tony Reimann, Gerard B. M. Heuvelink, Zbigniew Zwoliński, Grzegorz Rachlewicz, Krzysztof Rymer, and Michael Sommer
SOIL, 2, 221–240, https://doi.org/10.5194/soil-2-221-2016, https://doi.org/10.5194/soil-2-221-2016, 2016
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This study combined fieldwork, geochronology and modelling to get a better understanding of Arctic soil development on a landscape scale. Main processes are aeolian deposition, physical and chemical weathering and silt translocation. Discrepancies between model results and field observations showed that soil and landscape development is not as straightforward as we hypothesized. Interactions between landscape processes and soil processes have resulted in a complex soil pattern in the landscape.
M. Hoffmann, M. Schulz-Hanke, J. Garcia Alba, N. Jurisch, U. Hagemann, T. Sachs, M. Sommer, and J. Augustin
Biogeosciences Discuss., https://doi.org/10.5194/bgd-12-12923-2015, https://doi.org/10.5194/bgd-12-12923-2015, 2015
Manuscript not accepted for further review
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Processes driving the production, transformation and transport of CH4 in wetlands are highly complex. Thus, serious challenges are constitutes in terms of process understanding, potential drivers and the calculation of reliable CH4 emission estimates. We present a simple calculation algorithm to separate CH4 fluxes measured with closed chambers into diffusion- and ebullition-derived components, which helps facilitating the identification of underlying dynamics and potential drivers.
M. Pohl, M. Hoffmann, U. Hagemann, M. Giebels, E. Albiac Borraz, M. Sommer, and J. Augustin
Biogeosciences, 12, 2737–2752, https://doi.org/10.5194/bg-12-2737-2015, https://doi.org/10.5194/bg-12-2737-2015, 2015
Short summary
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Dynamic SOC and N stocks in the aerobic zone play a key role in the regulation of plant- and microbially mediated CO2 and CH4 fluxes in drained and cultivated fen peatlands. Their interaction with the groundwater level (GWL) strongly influenced soil C gas exchange, indicating effects of GWL-dependent N availability on C formation and transformation processes in the plant--soil system. In contrast, static SOC and N stocks showed no significant effect on C gas fluxes.
B. A. Miller, S. Koszinski, M. Wehrhan, and M. Sommer
SOIL, 1, 217–233, https://doi.org/10.5194/soil-1-217-2015, https://doi.org/10.5194/soil-1-217-2015, 2015
Short summary
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There are many different strategies for mapping SOC, among which is to model the variables needed to calculate the SOC stock indirectly or to model the SOC stock directly. The purpose of this research was to compare these two approaches for mapping SOC stocks from multiple linear regression models applied at the landscape scale via spatial association. Although the indirect approach had greater spatial variation and higher R2 values, the direct approach had a lower total estimated error.
J. Leifeld, C. Bader, E. Borraz, M. Hoffmann, M. Giebels, M. Sommer, and J. Augustin
Biogeosciences Discuss., https://doi.org/10.5194/bgd-11-12341-2014, https://doi.org/10.5194/bgd-11-12341-2014, 2014
Revised manuscript not accepted
Luis Alfredo Pires Barbosa, Martin Leue, Marc Wehrhan, and Michael Sommer
EGUsphere, https://doi.org/10.5194/egusphere-2025-746, https://doi.org/10.5194/egusphere-2025-746, 2025
This preprint is open for discussion and under review for Biogeosciences (BG).
Short summary
Short summary
Healthy soils need plant biomass, especially roots, to function properly. Our study examined how different wheat varieties and soil erosion impact root growth and carbon storage. We found that tillage erosion significantly reduced total wheat biomass, while newer wheat varieties produced more grain but contributed less carbon to the soil. Simulations showed that modern varieties are more sensitive to dry conditions, highlighting a trade-off between higher yields and long-term soil health.
Adrian Dahlmann, Mathias Hoffmann, Gernot Verch, Marten Schmidt, Michael Sommer, Jürgen Augustin, and Maren Dubbert
Hydrol. Earth Syst. Sci., 27, 3851–3873, https://doi.org/10.5194/hess-27-3851-2023, https://doi.org/10.5194/hess-27-3851-2023, 2023
Short summary
Short summary
Evapotranspiration (ET) plays a pivotal role in terrestrial water cycling, returning up to 90 % of precipitation to the atmosphere. We studied impacts of soil type and management on an agroecosystem using an automated system with modern modeling approaches. We modeled ET at high spatial and temporal resolution to highlight differences in heterogeneous soils on an hourly basis. Our results show significant differences in yield and smaller differences in ET overall, impacting water use efficiency.
Peter Stimmler, Mathias Goeckede, Bo Elberling, Susan Natali, Peter Kuhry, Nia Perron, Fabrice Lacroix, Gustaf Hugelius, Oliver Sonnentag, Jens Strauss, Christina Minions, Michael Sommer, and Jörg Schaller
Earth Syst. Sci. Data, 15, 1059–1075, https://doi.org/10.5194/essd-15-1059-2023, https://doi.org/10.5194/essd-15-1059-2023, 2023
Short summary
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Arctic soils store large amounts of carbon and nutrients. The availability of nutrients, such as silicon, calcium, iron, aluminum, phosphorus, and amorphous silica, is crucial to understand future carbon fluxes in the Arctic. Here, we provide, for the first time, a unique dataset of the availability of the abovementioned nutrients for the different soil layers, including the currently frozen permafrost layer. We relate these data to several geographical and geological parameters.
Marc Wehrhan, Daniel Puppe, Danuta Kaczorek, and Michael Sommer
Biogeosciences, 18, 5163–5183, https://doi.org/10.5194/bg-18-5163-2021, https://doi.org/10.5194/bg-18-5163-2021, 2021
Short summary
Short summary
UAS remote sensing provides a promising tool for new insights into Si biogeochemistry at catchment scale. Our study on an artificial catchment shows surprisingly high silicon stocks in the biomass of two grass species (C. epigejos, 7 g m−2; P. australis, 27 g m−2). The distribution of initial sediment properties (clay, Tiron-extractable Si, nitrogen, plant-available potassium) controlled the spatial distribution of C. epigejos. Soil wetness determined the occurrence of P. australis.
Rafael Poyatos, Víctor Granda, Víctor Flo, Mark A. Adams, Balázs Adorján, David Aguadé, Marcos P. M. Aidar, Scott Allen, M. Susana Alvarado-Barrientos, Kristina J. Anderson-Teixeira, Luiza Maria Aparecido, M. Altaf Arain, Ismael Aranda, Heidi Asbjornsen, Robert Baxter, Eric Beamesderfer, Z. Carter Berry, Daniel Berveiller, Bethany Blakely, Johnny Boggs, Gil Bohrer, Paul V. Bolstad, Damien Bonal, Rosvel Bracho, Patricia Brito, Jason Brodeur, Fernando Casanoves, Jérôme Chave, Hui Chen, Cesar Cisneros, Kenneth Clark, Edoardo Cremonese, Hongzhong Dang, Jorge S. David, Teresa S. David, Nicolas Delpierre, Ankur R. Desai, Frederic C. Do, Michal Dohnal, Jean-Christophe Domec, Sebinasi Dzikiti, Colin Edgar, Rebekka Eichstaedt, Tarek S. El-Madany, Jan Elbers, Cleiton B. Eller, Eugénie S. Euskirchen, Brent Ewers, Patrick Fonti, Alicia Forner, David I. Forrester, Helber C. Freitas, Marta Galvagno, Omar Garcia-Tejera, Chandra Prasad Ghimire, Teresa E. Gimeno, John Grace, André Granier, Anne Griebel, Yan Guangyu, Mark B. Gush, Paul J. Hanson, Niles J. Hasselquist, Ingo Heinrich, Virginia Hernandez-Santana, Valentine Herrmann, Teemu Hölttä, Friso Holwerda, James Irvine, Supat Isarangkool Na Ayutthaya, Paul G. Jarvis, Hubert Jochheim, Carlos A. Joly, Julia Kaplick, Hyun Seok Kim, Leif Klemedtsson, Heather Kropp, Fredrik Lagergren, Patrick Lane, Petra Lang, Andrei Lapenas, Víctor Lechuga, Minsu Lee, Christoph Leuschner, Jean-Marc Limousin, Juan Carlos Linares, Maj-Lena Linderson, Anders Lindroth, Pilar Llorens, Álvaro López-Bernal, Michael M. Loranty, Dietmar Lüttschwager, Cate Macinnis-Ng, Isabelle Maréchaux, Timothy A. Martin, Ashley Matheny, Nate McDowell, Sean McMahon, Patrick Meir, Ilona Mészáros, Mirco Migliavacca, Patrick Mitchell, Meelis Mölder, Leonardo Montagnani, Georgianne W. Moore, Ryogo Nakada, Furong Niu, Rachael H. Nolan, Richard Norby, Kimberly Novick, Walter Oberhuber, Nikolaus Obojes, A. Christopher Oishi, Rafael S. Oliveira, Ram Oren, Jean-Marc Ourcival, Teemu Paljakka, Oscar Perez-Priego, Pablo L. Peri, Richard L. Peters, Sebastian Pfautsch, William T. Pockman, Yakir Preisler, Katherine Rascher, George Robinson, Humberto Rocha, Alain Rocheteau, Alexander Röll, Bruno H. P. Rosado, Lucy Rowland, Alexey V. Rubtsov, Santiago Sabaté, Yann Salmon, Roberto L. Salomón, Elisenda Sánchez-Costa, Karina V. R. Schäfer, Bernhard Schuldt, Alexandr Shashkin, Clément Stahl, Marko Stojanović, Juan Carlos Suárez, Ge Sun, Justyna Szatniewska, Fyodor Tatarinov, Miroslav Tesař, Frank M. Thomas, Pantana Tor-ngern, Josef Urban, Fernando Valladares, Christiaan van der Tol, Ilja van Meerveld, Andrej Varlagin, Holm Voigt, Jeffrey Warren, Christiane Werner, Willy Werner, Gerhard Wieser, Lisa Wingate, Stan Wullschleger, Koong Yi, Roman Zweifel, Kathy Steppe, Maurizio Mencuccini, and Jordi Martínez-Vilalta
Earth Syst. Sci. Data, 13, 2607–2649, https://doi.org/10.5194/essd-13-2607-2021, https://doi.org/10.5194/essd-13-2607-2021, 2021
Short summary
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Transpiration is a key component of global water balance, but it is poorly constrained from available observations. We present SAPFLUXNET, the first global database of tree-level transpiration from sap flow measurements, containing 202 datasets and covering a wide range of ecological conditions. SAPFLUXNET and its accompanying R software package
sapfluxnetrwill facilitate new data syntheses on the ecological factors driving water use and drought responses of trees and forests.
Daniel A. Frick, Rainer Remus, Michael Sommer, Jürgen Augustin, Danuta Kaczorek, and Friedhelm von Blanckenburg
Biogeosciences, 17, 6475–6490, https://doi.org/10.5194/bg-17-6475-2020, https://doi.org/10.5194/bg-17-6475-2020, 2020
Short summary
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Silicon is taken up by some plants to increase structural stability and to develop stress resistance and is rejected by others. To explore the underlying mechanisms, we used the stable isotopes of silicon that shift in their relative abundance depending on the biochemical transformation involved. On species with a rejective (tomato, mustard) and active (wheat) uptake mechanism, grown in hydroculture, we found that the transport of silicic acid is controlled by the precipitation of biogenic opal.
Florian Wilken, Michael Ketterer, Sylvia Koszinski, Michael Sommer, and Peter Fiener
SOIL, 6, 549–564, https://doi.org/10.5194/soil-6-549-2020, https://doi.org/10.5194/soil-6-549-2020, 2020
Short summary
Short summary
Soil redistribution by water and tillage erosion processes on arable land is a major threat to sustainable use of soil resources. We unravel the role of tillage and water erosion from fallout radionuclide (239+240Pu) activities in a ground moraine landscape. Our results show that tillage erosion dominates soil redistribution processes and has a major impact on the hydrological and sedimentological connectivity, which started before the onset of highly mechanised farming since the 1960s.
W. Marijn van der Meij, Arnaud J. A. M. Temme, Jakob Wallinga, and Michael Sommer
SOIL, 6, 337–358, https://doi.org/10.5194/soil-6-337-2020, https://doi.org/10.5194/soil-6-337-2020, 2020
Short summary
Short summary
We developed a model to simulate long-term development of soils and landscapes under varying rainfall and land-use conditions to quantify the temporal variation of soil patterns. In natural landscapes, rainfall amount was the dominant factor influencing soil variation, while for agricultural landscapes, landscape position became the dominant factor due to tillage erosion. Our model shows potential for simulating past and future developments of soils in various landscapes and climates.
Jannis Groh, Jan Vanderborght, Thomas Pütz, Hans-Jörg Vogel, Ralf Gründling, Holger Rupp, Mehdi Rahmati, Michael Sommer, Harry Vereecken, and Horst H. Gerke
Hydrol. Earth Syst. Sci., 24, 1211–1225, https://doi.org/10.5194/hess-24-1211-2020, https://doi.org/10.5194/hess-24-1211-2020, 2020
Daniel Puppe, Axel Höhn, Danuta Kaczorek, Manfred Wanner, Marc Wehrhan, and Michael Sommer
Biogeosciences, 14, 5239–5252, https://doi.org/10.5194/bg-14-5239-2017, https://doi.org/10.5194/bg-14-5239-2017, 2017
Short summary
Short summary
We quantified different biogenic Si pools in soils of a developing ecosystem and analyzed their influence on short-term changes of the water soluble Si fraction. From our results we concluded small (< 5 µm) and/or fragile phytogenic Si structures to have the biggest impact on short-term changes of water soluble Si. Analyses of these phytogenic Si structures are urgently needed in future as they seem to represent the most important driver of Si cycling in terrestrial biogeosystems in general.
Mathias Hoffmann, Nicole Jurisch, Juana Garcia Alba, Elisa Albiac Borraz, Marten Schmidt, Vytas Huth, Helmut Rogasik, Helene Rieckh, Gernot Verch, Michael Sommer, and Jürgen Augustin
Biogeosciences, 14, 1003–1019, https://doi.org/10.5194/bg-14-1003-2017, https://doi.org/10.5194/bg-14-1003-2017, 2017
Short summary
Short summary
We present a suitable and reliable method to detect short-term and small-scale soil organic carbon stock dynamics (ΔSOC). Spatiotemporal dynamics of ΔSOC are determined for a 5-year study period at the experimental field trial
CarboZALFusing automatic chamber measurements of NEE and modeled NPPshoot. Results were compared against ΔSOC observed from repeated soil inventories. Both ∆SOC data sets corresponded well regarding their magnitude and spatial tendency.
Mathias Hoffmann, Maximilian Schulz-Hanke, Juana Garcia Alba, Nicole Jurisch, Ulrike Hagemann, Torsten Sachs, Michael Sommer, and Jürgen Augustin
Atmos. Meas. Tech., 10, 109–118, https://doi.org/10.5194/amt-10-109-2017, https://doi.org/10.5194/amt-10-109-2017, 2017
Short summary
Short summary
Processes driving production and transport of CH4 in wetlands are complex. We present an algorithm to separate open-water automatic chamber CH4 fluxes into diffusion and ebullition. This helps to reveal dynamics, identify drivers and obtain reliable CH4 emissions. The algorithm is based on sudden concentration changes during single measurements. A variable filter is applied using a multiple of the interquartile range. The algorithm was verified for data of a rewetted former fen grassland site.
W. Marijn van der Meij, Arnaud J. A. M. Temme, Christian M. F. J. J. de Kleijn, Tony Reimann, Gerard B. M. Heuvelink, Zbigniew Zwoliński, Grzegorz Rachlewicz, Krzysztof Rymer, and Michael Sommer
SOIL, 2, 221–240, https://doi.org/10.5194/soil-2-221-2016, https://doi.org/10.5194/soil-2-221-2016, 2016
Short summary
Short summary
This study combined fieldwork, geochronology and modelling to get a better understanding of Arctic soil development on a landscape scale. Main processes are aeolian deposition, physical and chemical weathering and silt translocation. Discrepancies between model results and field observations showed that soil and landscape development is not as straightforward as we hypothesized. Interactions between landscape processes and soil processes have resulted in a complex soil pattern in the landscape.
M. Hoffmann, M. Schulz-Hanke, J. Garcia Alba, N. Jurisch, U. Hagemann, T. Sachs, M. Sommer, and J. Augustin
Biogeosciences Discuss., https://doi.org/10.5194/bgd-12-12923-2015, https://doi.org/10.5194/bgd-12-12923-2015, 2015
Manuscript not accepted for further review
Short summary
Short summary
Processes driving the production, transformation and transport of CH4 in wetlands are highly complex. Thus, serious challenges are constitutes in terms of process understanding, potential drivers and the calculation of reliable CH4 emission estimates. We present a simple calculation algorithm to separate CH4 fluxes measured with closed chambers into diffusion- and ebullition-derived components, which helps facilitating the identification of underlying dynamics and potential drivers.
M. Pohl, M. Hoffmann, U. Hagemann, M. Giebels, E. Albiac Borraz, M. Sommer, and J. Augustin
Biogeosciences, 12, 2737–2752, https://doi.org/10.5194/bg-12-2737-2015, https://doi.org/10.5194/bg-12-2737-2015, 2015
Short summary
Short summary
Dynamic SOC and N stocks in the aerobic zone play a key role in the regulation of plant- and microbially mediated CO2 and CH4 fluxes in drained and cultivated fen peatlands. Their interaction with the groundwater level (GWL) strongly influenced soil C gas exchange, indicating effects of GWL-dependent N availability on C formation and transformation processes in the plant--soil system. In contrast, static SOC and N stocks showed no significant effect on C gas fluxes.
B. A. Miller, S. Koszinski, M. Wehrhan, and M. Sommer
SOIL, 1, 217–233, https://doi.org/10.5194/soil-1-217-2015, https://doi.org/10.5194/soil-1-217-2015, 2015
Short summary
Short summary
There are many different strategies for mapping SOC, among which is to model the variables needed to calculate the SOC stock indirectly or to model the SOC stock directly. The purpose of this research was to compare these two approaches for mapping SOC stocks from multiple linear regression models applied at the landscape scale via spatial association. Although the indirect approach had greater spatial variation and higher R2 values, the direct approach had a lower total estimated error.
J. Leifeld, C. Bader, E. Borraz, M. Hoffmann, M. Giebels, M. Sommer, and J. Augustin
Biogeosciences Discuss., https://doi.org/10.5194/bgd-11-12341-2014, https://doi.org/10.5194/bgd-11-12341-2014, 2014
Revised manuscript not accepted
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The effects of land use on soil carbon stocks in the UK
Technical note: A validated correction method to quantify organic and inorganic carbon in soils using Rock-Eval® thermal analysis
Distinct changes in carbon, nitrogen, and phosphorus cycling in the litter layer across two contrasting forest-tundra ecotones
A microbially-driven and depth-explicit soil organic carbon model constrained by carbon isotopes to reduce equifinality
Earth observation reveals reduced winter wheat growth and the importance of soil water storing capacity during drought
Vegetation patterns associated with nutrient availability and supply in high-elevation tropical Andean ecosystems
Technical note: An open-source, low-cost system for continuous monitoring of low nitrate concentrations in soil and open water
Plutonium concentrations link soil organic matter decline to wind erosion in ploughed soils of South Africa
Dissolved organic matter fosters core mercury-methylating microbiome for methylmercury production in paddy soils
Solubility characteristics of soil humic substances as a function of pH
Long-term fertilization increases soil but not plant or microbial N in a Chihuahuan Desert grassland
Factors controlling spatiotemporal variability of soil carbon accumulation and stock estimates in a tidal salt marsh
Exploring micro-scale heterogeneity as a driver of biogeochemical transformations and gas transport in peat
Moisture and temperature effects on the radiocarbon signature of respired carbon dioxide to assess stability of soil carbon in the Tibetan Plateau
Non-mycorrhizal root-associated fungi increase soil C stocks and stability via diverse mechanisms
Drought counteracts soil warming more strongly in the subsoil than in the topsoil according to a vertical microbial SOC model
Nine years of warming and nitrogen addition in the Tibetan grassland promoted loss of soil organic carbon but did not alter the bulk change in chemical structure
Soil priming effects and involved microbial community along salt gradients
Adjustments to the Rock-Eval® thermal analysis for soil organic and inorganic carbon quantification
Ecosystem-specific patterns and drivers of global reactive iron mineral-associated organic carbon
Dark septate endophytic fungi associated with pioneer grass inhabiting volcanic deposits and their functions in promoting plant growth
Global patterns and drivers of phosphorus fractions in natural soils
Reviews and syntheses: Iron – a driver of nitrogen bioavailability in soils?
How well does ramped thermal oxidation quantify the age distribution of soil carbon? Assessing thermal stability of physically and chemically fractionated soil organic matter
Differential temperature sensitivity of intracellular metabolic processes and extracellular soil enzyme activities
Mapping soil organic carbon fractions for Australia, their stocks, and uncertainty
Technical note: The recovery rate of free particulate organic matter from soil samples is strongly affected by the method of density fractionation
Deforestation for agriculture leads to soil warming and enhanced litter decomposition in subarctic soils
Temperature sensitivity of soil organic carbon respiration along a forested elevation gradient in the Rwenzori Mountains, Uganda
The influence of elevated CO2 and soil depth on rhizosphere activity and nutrient availability in a mature Eucalyptus woodland
The paradox of assessing greenhouse gases from soils for nature-based solutions
Management-induced changes in soil organic carbon on global croplands
Pore network modeling as a new tool for determining gas diffusivity in peat
Temperature sensitivity of dark CO2 fixation in temperate forest soils
Effects of precipitation seasonality, irrigation, vegetation cycle and soil type on enhanced weathering – modeling of cropland case studies across four sites
Stable isotope profiles of soil organic carbon in forested and grassland landscapes in the Lake Alaotra basin (Madagascar): insights in past vegetation changes
Reviews and syntheses: The promise of big diverse soil data, moving current practices towards future potential
Dynamics of rare earth elements and associated major and trace elements during Douglas-fir (Pseudotsuga menziesii) and European beech (Fagus sylvatica L.) litter degradation
To what extent can soil moisture and soil Cu contamination stresses affect nitrous species emissions? Estimation through calibration of a nitrification–denitrification model
Carbon, nitrogen, and phosphorus stoichiometry of organic matter in Swedish forest soils and its relationship with climate, tree species, and soil texture
Soil geochemistry as a driver of soil organic matter composition: insights from a soil chronosequence
Leaching of inorganic and organic phosphorus and nitrogen in contrasting beech forest soils – seasonal patterns and effects of fertilization
Age and chemistry of dissolved organic carbon reveal enhanced leaching of ancient labile carbon at the permafrost thaw zone
Soil organic carbon stabilization mechanisms and temperature sensitivity in old terraced soils
Effect of organic carbon addition on paddy soil organic carbon decomposition under different irrigation regimes
Soil profile connectivity can impact microbial substrate use, affecting how soil CO2 effluxes are controlled by temperature
Henning Teickner, Edzer Pebesma, and Klaus-Holger Knorr
Biogeosciences, 22, 417–433, https://doi.org/10.5194/bg-22-417-2025, https://doi.org/10.5194/bg-22-417-2025, 2025
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Decomposition rates for Sphagnum mosses, the main peat-forming plants in northern peatlands, are often derived from litterbag experiments. Here, we estimate initial leaching losses from available Sphagnum litterbag experiments and analyze how decomposition rates are biased when initial leaching losses are ignored. Our analyses indicate that initial leaching losses range between 3 to 18 mass-% and that this may result in overestimated mass losses when extrapolated to several decades.
Shanshan Bai, Yifei Ge, Dongtan Yao, Yifan Wang, Jinfang Tan, Shuai Zhang, Yutao Peng, and Xiaoqian Jiang
Biogeosciences, 22, 135–151, https://doi.org/10.5194/bg-22-135-2025, https://doi.org/10.5194/bg-22-135-2025, 2025
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Mineral fertilization led to increases in total P, available P, high-activity inorganic P fractions, and organic P but reduced the abundance of P-cycling genes by decreasing soil pH and increasing P in bulk soil. Straw retention enhanced organic carbon, total P, and available P concentrations in water-extractable colloids (WECs). Abundances of the phoD gene and phoD-harboring Proteobacteria in WECs were elevated under straw retention, suggesting an increase in P-mineralization capacity.
Kyle E. Smart, Daniel O. Breecker, Christopher B. Blackwood, and Timothy M. Gallagher
Biogeosciences, 22, 87–101, https://doi.org/10.5194/bg-22-87-2025, https://doi.org/10.5194/bg-22-87-2025, 2025
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When microbes consume carbon within soils, it is important to know how much carbon is respired and lost as carbon dioxide versus how much is used to make new biomass. We used a new approach of monitoring carbon dioxide and oxygen to track the fate of consumed carbon during a series of laboratory experiments where sugar was added to moistened soil. Our approach allowed us to estimate how much sugar was converted to dead microbial biomass, which is more likely to be preserved in soils.
Katherine E. Grant, Marisa N. Repasch, Kari M. Finstad, Julia D. Kerr, Maxwell Marple, Christopher J. Larson, Taylor A. B. Broek, Jennifer Pett-Ridge, and Karis J. McFarlane
Biogeosciences, 21, 4395–4411, https://doi.org/10.5194/bg-21-4395-2024, https://doi.org/10.5194/bg-21-4395-2024, 2024
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Soils store organic carbon composed of multiple compounds from plants and microbes for different lengths of time. To understand how soils store these different carbon types, we measure the time each carbon fraction is in a grassland soil profile. Our results show that the length of time each individual soil fraction is in our soil changes. Our approach allows a detailed look at the different components in soils. This study can help improve our understanding of soil dynamics.
Peter Levy, Laura Bentley, Peter Danks, Bridget Emmett, Angus Garbutt, Stephen Heming, Peter Henrys, Aidan Keith, Inma Lebron, Niall McNamara, Richard Pywell, John Redhead, David Robinson, and Alexander Wickenden
Biogeosciences, 21, 4301–4315, https://doi.org/10.5194/bg-21-4301-2024, https://doi.org/10.5194/bg-21-4301-2024, 2024
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We collated a large data set (15 790 soil cores) on soil carbon stock in different land uses. Soil carbon stocks were highest in woodlands and lowest in croplands. The variability in the effects was large. This has important implications for agri-environment schemes seeking to sequester carbon in the soil by altering land use because the effect of a given intervention is very hard to verify.
Marija Stojanova, Pierre Arbelet, François Baudin, Nicolas Bouton, Giovanni Caria, Lorenza Pacini, Nicolas Proix, Edouard Quibel, Achille Thin, and Pierre Barré
Biogeosciences, 21, 4229–4237, https://doi.org/10.5194/bg-21-4229-2024, https://doi.org/10.5194/bg-21-4229-2024, 2024
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Because of its importance for climate regulation and soil health, many studies focus on carbon dynamics in soils. However, quantifying organic and inorganic carbon remains an issue in carbonated soils. In this technical note, we propose a validated correction method to quantify organic and inorganic carbon in soils using Rock-Eval® thermal analysis. With this correction, the Rock-Eval® method has the potential to become the standard method for quantifying carbon in carbonate soils.
Frank Hagedorn, Joesphine Imboden, Pavel Moiseev, Decai Gao, Emmanuel Frossard, Daniel Christen, Konstantin Gavazov, and Jasmin Fetzer
EGUsphere, https://doi.org/10.5194/egusphere-2024-2622, https://doi.org/10.5194/egusphere-2024-2622, 2024
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At treeline, plant species change abruptly from low stature plants in tundra to trees in forests. Our study documents that from tundra towards forest, the litter layer gets strongly enriched in nutrients. We show that these litter quality changes alter nutrient processing by soil microbes and increase the nutrient release during decomposition in forest than in tundra. The associated improvement of nutrient availability in the forest potentially stimulates tree growth and treeline shifts.
Marijn Van de Broek, Gerard Govers, Marion Schrumpf, and Johan Six
EGUsphere, https://doi.org/10.5194/egusphere-2024-2205, https://doi.org/10.5194/egusphere-2024-2205, 2024
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Soil organic carbon models are used to predict how soils affect the concentration of CO2 in the atmosphere. We show that equifinality – the phenomenon that different parameter values lead to correct overall model outputs, albeit with a different model behaviour – is an important source of model uncertainty. Our results imply that adding more complexity to soil organic carbon models is unlikely to lead to better predictions, as long as more data to constrain model parameters are not available.
Hanna Sjulgård, Lukas Valentin Graf, Tino Colombi, Juliane Hirte, Thomas Keller, and Helge Aasen
EGUsphere, https://doi.org/10.5194/egusphere-2024-1872, https://doi.org/10.5194/egusphere-2024-1872, 2024
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Our results showed that crop development derived from satellite images was lower in a dry year compared to a normal year, and faster growth was found more important for higher biomass during drought. The magnitude of the drought impact differed between fields, where higher crop performance was related to more plant available water, suggesting that soil properties play a role in crop response to drought. Our results shows that satellite images can be used to assess plant-soil-weather interactions
Armando Molina, Veerle Vanacker, Oliver Chadwick, Santiago Zhiminaicela, Marife Corre, and Edzo Veldkamp
Biogeosciences, 21, 3075–3091, https://doi.org/10.5194/bg-21-3075-2024, https://doi.org/10.5194/bg-21-3075-2024, 2024
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The tropical Andes contains unique landscapes where forest patches are surrounded by tussock grasses and cushion-forming plants. The aboveground vegetation composition informs us about belowground nutrient availability: patterns in plant-available nutrients resulted from strong biocycling of cations and removal of soil nutrients by plant uptake or leaching. Future changes in vegetation distribution will affect soil water and solute fluxes and the aquatic ecology of Andean rivers and lakes.
Sahiti Bulusu, Cristina Prieto García, Helen E. Dahlke, and Elad Levintal
Biogeosciences, 21, 3007–3013, https://doi.org/10.5194/bg-21-3007-2024, https://doi.org/10.5194/bg-21-3007-2024, 2024
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Do-it-yourself hardware is a new way to improve measurement resolution. We present a low-cost, automated system for field measurements of low nitrate concentrations in soil porewater and open water bodies. All data hardware components cost USD 1100, which is much cheaper than other available commercial solutions. We provide the complete building guide to reduce technical barriers, which we hope will allow easier reproducibility and set up new soil and environmental monitoring applications.
Joel Mohren, Hendrik Wiesel, Wulf Amelung, L. Keith Fifield, Alexandra Sandhage-Hofmann, Erik Strub, Steven A. Binnie, Stefan Heinze, Elmarie Kotze, Chris Du Preez, Stephen G. Tims, and Tibor J. Dunai
EGUsphere, https://doi.org/10.5194/egusphere-2024-1312, https://doi.org/10.5194/egusphere-2024-1312, 2024
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We measured concentrations of fallout radionuclides (FRNs) in soil samples taken from arable land in South Africa. We find that during the second half of the 20th century CE, the FRN data strongly correlate with the soil organic matter (SOM) content of the soils. The finding implies that wind erosion strongly influenced SOM loss in the soils we investigated. Furthermore, the exponential decline of FRN concentrations and SOM content over time peaks shortly after native grassland is cultivated.
Qiang Pu, Bo Meng, Jen-How Huang, Kun Zhang, Jiang Liu, Yurong Liu, Mahmoud A. Abdelhafiz, and Xinbin Feng
EGUsphere, https://doi.org/10.5194/egusphere-2024-590, https://doi.org/10.5194/egusphere-2024-590, 2024
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This study examines the effect of dissolved organic matter (DOM) on microbial mercury (Hg) methylation in paddy soils. It uncovers that DOM regulates Hg methylation mainly through altering core Hg-methylating microbiome composition and boosting the growth of core Hg-methylating microorganisms. The study highlights that in the regulation of methylmercury formation in paddy soils, more attention should be paid to changes in DOM concentration and composition.
Xuemei Yang, Jie Zhang, Khan M. G. Mostofa, Mohammad Mohinuzzaman, H. Henry Teng, Nicola Senesi, Giorgio S. Senesi, Jie Yuan, Yu Liu, Si-Liang Li, Xiaodong Li, Baoli Wang, and Cong-Qiang Liu
EGUsphere, https://doi.org/10.5194/egusphere-2023-2994, https://doi.org/10.5194/egusphere-2023-2994, 2024
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The solubility characteristics of soil humic acids (HA), fulvic acids (FA), and protein-like substances (PLS) at different pH values remain uncertain. The key findings includes: HA solubility increases with increasing pH and decreases with decreasing pH; HApH6 and HApH1 contribute to 39.1–49.2 % and 3.1–24.1 % of total DOM, respectively; and HApH2, FA, and PLS are highly soluble at acidic pH values and are transported by ambient water. These issues are vital for sustainable soil management.
Violeta Mendoza-Martinez, Scott L. Collins, and Jennie R. McLaren
Biogeosciences, 21, 2655–2667, https://doi.org/10.5194/bg-21-2655-2024, https://doi.org/10.5194/bg-21-2655-2024, 2024
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We examine the impacts of multi-decadal nitrogen additions on a dryland ecosystem N budget, including the soil, microbial, and plant N pools. After 26 years, there appears to be little impact on the soil microbial or plant community and only minimal increases in N pools within the soil. While perhaps encouraging from a conservation standpoint, we calculate that greater than 95 % of the nitrogen added to the system is not retained and is instead either lost deeper in the soil or emitted as gas.
Sean Fettrow, Andrew Wozniak, Holly A. Michael, and Angelia L. Seyfferth
Biogeosciences, 21, 2367–2384, https://doi.org/10.5194/bg-21-2367-2024, https://doi.org/10.5194/bg-21-2367-2024, 2024
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Salt marshes play a big role in global carbon (C) storage, and C stock estimates are used to predict future changes. However, spatial and temporal gradients in C burial rates over the landscape exist due to variations in water inundation, dominant plant species and stage of growth, and tidal action. We quantified soil C concentrations in soil cores across time and space beside several porewater biogeochemical variables and discussed the controls on variability in soil C in salt marsh ecosystems.
Lukas Kohl, Petri Kiuru, Marjo Palviainen, Maarit Raivonen, Markku Koskinen, Mari Pihlatie, and Annamari Lauren
EGUsphere, https://doi.org/10.5194/egusphere-2024-1280, https://doi.org/10.5194/egusphere-2024-1280, 2024
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We present an assay to illuminate heterogeneity of biogeochemical transformations within peat samples. For this, we injected isotope labelled acetate into peat cores and monitoring the release of label-derived gases, which we compared to microtomography images. The fraction of label converted to CO2 and the rapidness of this conversion was linked to injection depth as well as air-filled porosity. Pore network metric did not provide predictive power over compared to porosity alone.
Andrés Tangarife-Escobar, Georg Guggenberger, Xiaojuan Feng, Guohua Dai, Carolina Urbina-Malo, Mina Azizi-Rad, and Carlos A. Sierra
Biogeosciences, 21, 1277–1299, https://doi.org/10.5194/bg-21-1277-2024, https://doi.org/10.5194/bg-21-1277-2024, 2024
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Soil organic matter stability depends on future temperature and precipitation scenarios. We used radiocarbon (14C) data and model predictions to understand how the transit time of carbon varies under environmental change in grasslands and peatlands. Soil moisture affected the Δ14C of peatlands, while temperature did not have any influence. Our models show the correspondence between Δ14C and transit time and could allow understanding future interactions between terrestrial and atmospheric carbon
Emiko K. Stuart, Laura Castañeda-Gómez, Wolfram Buss, Jeff R. Powell, and Yolima Carrillo
Biogeosciences, 21, 1037–1059, https://doi.org/10.5194/bg-21-1037-2024, https://doi.org/10.5194/bg-21-1037-2024, 2024
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We inoculated wheat plants with various types of fungi whose impacts on soil carbon are poorly understood. After several months of growth, we examined both their impacts on soil carbon and the underlying mechanisms using multiple methods. Overall the fungi benefitted the storage of carbon in soil, mainly by improving the stability of pre-existing carbon, but several pathways were involved. This study demonstrates their importance for soil carbon storage and, therefore, climate change mitigation.
Marleen Pallandt, Marion Schrumpf, Holger Lange, Markus Reichstein, Lin Yu, and Bernhard Ahrens
EGUsphere, https://doi.org/10.5194/egusphere-2024-186, https://doi.org/10.5194/egusphere-2024-186, 2024
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As soils get warmer due to climate change, SOC decomposes faster because of higher microbial activity, but only with sufficient soil moisture. We modelled how microbes decompose plant litter and microbial residues at different soil depths. We found that deep soil layers are more sensitive than topsoils. SOC is lost from the soil with warming, but this can be mitigated or worsened depending on the type of litter and its sensitivity to temperature. Droughts can reduce warming-induced SOC losses.
Huimin Sun, Michael W. I. Schmidt, Jintao Li, Jinquan Li, Xiang Liu, Nicholas O. E. Ofiti, Shurong Zhou, and Ming Nie
Biogeosciences, 21, 575–589, https://doi.org/10.5194/bg-21-575-2024, https://doi.org/10.5194/bg-21-575-2024, 2024
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A soil organic carbon (SOC) molecular structure suggested that the easily decomposable and stabilized SOC is similarly affected after 9-year warming and N treatments despite large changes in SOC stocks. Given the long residence time of some SOC, the similar loss of all measurable chemical forms of SOC under global change treatments could have important climate consequences.
Haoli Zhang, Doudou Chang, Zhifeng Zhu, Chunmei Meng, and Kaiyong Wang
Biogeosciences, 21, 1–11, https://doi.org/10.5194/bg-21-1-2024, https://doi.org/10.5194/bg-21-1-2024, 2024
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Soil salinity mediates microorganisms and soil processes like soil organic carbon (SOC) cycling. We observed that negative priming effects at the early stages might be due to the preferential utilization of cottonseed meal. The positive priming that followed decreased with the increase in salinity.
Joséphine Hazera, David Sebag, Isabelle Kowalewski, Eric Verrecchia, Herman Ravelojaona, and Tiphaine Chevallier
Biogeosciences, 20, 5229–5242, https://doi.org/10.5194/bg-20-5229-2023, https://doi.org/10.5194/bg-20-5229-2023, 2023
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This study adapts the Rock-Eval® protocol to quantify soil organic carbon (SOC) and soil inorganic carbon (SIC) on a non-pretreated soil aliquot. The standard protocol properly estimates SOC contents once the TOC parameter is corrected. However, it cannot complete the thermal breakdown of SIC amounts > 4 mg, leading to an underestimation of high SIC contents by the MinC parameter, even after correcting for this. Thus, the final oxidation isotherm is extended to 7 min to quantify any SIC amount.
Bo Zhao, Amin Dou, Zhiwei Zhang, Zhenyu Chen, Wenbo Sun, Yanli Feng, Xiaojuan Wang, and Qiang Wang
Biogeosciences, 20, 4761–4774, https://doi.org/10.5194/bg-20-4761-2023, https://doi.org/10.5194/bg-20-4761-2023, 2023
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This study provided a comprehensive analysis of the spatial variability and determinants of Fe-bound organic carbon (Fe-OC) among terrestrial, wetland, and marine ecosystems and its governing factors globally. We illustrated that reactive Fe was not only an important sequestration mechanism for OC in terrestrial ecosystems but also an effective “rusty sink” of OC preservation in wetland and marine ecosystems, i.e., a key factor for long-term OC storage in global ecosystems.
Han Sun, Tomoyasu Nishizawa, Hiroyuki Ohta, and Kazuhiko Narisawa
Biogeosciences, 20, 4737–4749, https://doi.org/10.5194/bg-20-4737-2023, https://doi.org/10.5194/bg-20-4737-2023, 2023
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In this research, we assessed the diversity and function of the dark septate endophytic (DSE) fungi community associated with Miscanthus condensatus root in volcanic ecosystems. Both metabarcoding and isolation were adopted in this study. We further validated effects on plant growth by inoculation of some core DSE isolates. This study helps improve our understanding of the role of Miscanthus condensatus-associated DSE fungi during the restoration of post-volcanic ecosystems.
Xianjin He, Laurent Augusto, Daniel S. Goll, Bruno Ringeval, Ying-Ping Wang, Julian Helfenstein, Yuanyuan Huang, and Enqing Hou
Biogeosciences, 20, 4147–4163, https://doi.org/10.5194/bg-20-4147-2023, https://doi.org/10.5194/bg-20-4147-2023, 2023
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We identified total soil P concentration as the most important predictor of all soil P pool concentrations, except for primary mineral P concentration, which is primarily controlled by soil pH and only secondarily by total soil P concentration. We predicted soil P pools’ distributions in natural systems, which can inform assessments of the role of natural P availability for ecosystem productivity, climate change mitigation, and the functioning of the Earth system.
Imane Slimani, Xia Zhu-Barker, Patricia Lazicki, and William Horwath
Biogeosciences, 20, 3873–3894, https://doi.org/10.5194/bg-20-3873-2023, https://doi.org/10.5194/bg-20-3873-2023, 2023
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There is a strong link between nitrogen availability and iron minerals in soils. These minerals have multiple outcomes for nitrogen availability depending on soil conditions and properties. For example, iron can limit microbial degradation of nitrogen in aerated soils but has opposing outcomes in non-aerated soils. This paper focuses on the multiple ways iron can affect nitrogen bioavailability in soils.
Shane W. Stoner, Marion Schrumpf, Alison Hoyt, Carlos A. Sierra, Sebastian Doetterl, Valier Galy, and Susan Trumbore
Biogeosciences, 20, 3151–3163, https://doi.org/10.5194/bg-20-3151-2023, https://doi.org/10.5194/bg-20-3151-2023, 2023
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Soils store more carbon (C) than any other terrestrial C reservoir, but the processes that control how much C stays in soil, and for how long, are very complex. Here, we used a recent method that involves heating soil in the lab to measure the range of C ages in soil. We found that most C in soil is decades to centuries old, while some stays for much shorter times (days to months), and some is thousands of years old. Such detail helps us to estimate how soil C may react to changing climate.
Adetunji Alex Adekanmbi, Laurence Dale, Liz Shaw, and Tom Sizmur
Biogeosciences, 20, 2207–2219, https://doi.org/10.5194/bg-20-2207-2023, https://doi.org/10.5194/bg-20-2207-2023, 2023
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The decomposition of soil organic matter and flux of carbon dioxide are expected to increase as temperatures rise. However, soil organic matter decomposition is a two-step process whereby large molecules are first broken down outside microbial cells and then respired within microbial cells. We show here that these two steps are not equally sensitive to increases in soil temperature and that global warming may cause a shift in the rate-limiting step from outside to inside the microbial cell.
Mercedes Román Dobarco, Alexandre M. J-C. Wadoux, Brendan Malone, Budiman Minasny, Alex B. McBratney, and Ross Searle
Biogeosciences, 20, 1559–1586, https://doi.org/10.5194/bg-20-1559-2023, https://doi.org/10.5194/bg-20-1559-2023, 2023
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Soil organic carbon (SOC) is of a heterogeneous nature and varies in chemistry, stabilisation mechanisms, and persistence in soil. In this study we mapped the stocks of SOC fractions with different characteristics and turnover rates (presumably PyOC >= MAOC > POC) across Australia, combining spectroscopy and digital soil mapping. The SOC stocks (0–30 cm) were estimated as 13 Pg MAOC, 2 Pg POC, and 5 Pg PyOC.
Frederick Büks
Biogeosciences, 20, 1529–1535, https://doi.org/10.5194/bg-20-1529-2023, https://doi.org/10.5194/bg-20-1529-2023, 2023
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Ultrasonication with density fractionation of soils is a commonly used method to separate soil organic matter pools, which is, e.g., important to calculate carbon turnover in landscapes. It is shown that the approach that merges soil and dense solution without mixing has a low recovery rate and causes co-extraction of parts of the retained labile pool along with the intermediate pool. An alternative method with high recovery rates and no cross-contamination was recommended.
Tino Peplau, Christopher Poeplau, Edward Gregorich, and Julia Schroeder
Biogeosciences, 20, 1063–1074, https://doi.org/10.5194/bg-20-1063-2023, https://doi.org/10.5194/bg-20-1063-2023, 2023
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We buried tea bags and temperature loggers in a paired-plot design in soils under forest and agricultural land and retrieved them after 2 years to quantify the effect of land-use change on soil temperature and litter decomposition in subarctic agricultural systems. We could show that agricultural soils were on average 2 °C warmer than forests and that litter decomposition was enhanced. The results imply that deforestation amplifies effects of climate change on soil organic matter dynamics.
Joseph Okello, Marijn Bauters, Hans Verbeeck, Samuel Bodé, John Kasenene, Astrid Françoys, Till Engelhardt, Klaus Butterbach-Bahl, Ralf Kiese, and Pascal Boeckx
Biogeosciences, 20, 719–735, https://doi.org/10.5194/bg-20-719-2023, https://doi.org/10.5194/bg-20-719-2023, 2023
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The increase in global and regional temperatures has the potential to drive accelerated soil organic carbon losses in tropical forests. We simulated climate warming by translocating intact soil cores from higher to lower elevations. The results revealed increasing temperature sensitivity and decreasing losses of soil organic carbon with increasing elevation. Our results suggest that climate warming may trigger enhanced losses of soil organic carbon from tropical montane forests.
Johanna Pihlblad, Louise C. Andresen, Catriona A. Macdonald, David S. Ellsworth, and Yolima Carrillo
Biogeosciences, 20, 505–521, https://doi.org/10.5194/bg-20-505-2023, https://doi.org/10.5194/bg-20-505-2023, 2023
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Elevated CO2 in the atmosphere increases forest biomass productivity when growth is not limited by soil nutrients. This study explores how mature trees stimulate soil availability of nitrogen and phosphorus with free-air carbon dioxide enrichment after 5 years of fumigation. We found that both nutrient availability and processes feeding available pools increased in the rhizosphere, and phosphorus increased at depth. This appears to not be by decomposition but by faster recycling of nutrients.
Rodrigo Vargas and Van Huong Le
Biogeosciences, 20, 15–26, https://doi.org/10.5194/bg-20-15-2023, https://doi.org/10.5194/bg-20-15-2023, 2023
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Quantifying the role of soils in nature-based solutions requires accurate estimates of soil greenhouse gas (GHG) fluxes. We suggest that multiple GHG fluxes should not be simultaneously measured at a few fixed time intervals, but an optimized sampling approach can reduce bias and uncertainty. Our results have implications for assessing GHG fluxes from soils and a better understanding of the role of soils in nature-based solutions.
Kristine Karstens, Benjamin Leon Bodirsky, Jan Philipp Dietrich, Marta Dondini, Jens Heinke, Matthias Kuhnert, Christoph Müller, Susanne Rolinski, Pete Smith, Isabelle Weindl, Hermann Lotze-Campen, and Alexander Popp
Biogeosciences, 19, 5125–5149, https://doi.org/10.5194/bg-19-5125-2022, https://doi.org/10.5194/bg-19-5125-2022, 2022
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Soil organic carbon (SOC) has been depleted by anthropogenic land cover change and agricultural management. While SOC models often simulate detailed biochemical processes, the management decisions are still little investigated at the global scale. We estimate that soils have lost around 26 GtC relative to a counterfactual natural state in 1975. Yet, since 1975, SOC has been increasing again by 4 GtC due to a higher productivity, recycling of crop residues and manure, and no-tillage practices.
Petri Kiuru, Marjo Palviainen, Arianna Marchionne, Tiia Grönholm, Maarit Raivonen, Lukas Kohl, and Annamari Laurén
Biogeosciences, 19, 5041–5058, https://doi.org/10.5194/bg-19-5041-2022, https://doi.org/10.5194/bg-19-5041-2022, 2022
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Peatlands are large carbon stocks. Emissions of carbon dioxide and methane from peatlands may increase due to changes in management and climate. We studied the variation in the gas diffusivity of peat with depth using pore network simulations and laboratory experiments. Gas diffusivity was found to be lower in deeper peat with smaller pores and lower pore connectivity. However, gas diffusivity was not extremely low in wet conditions, which may reflect the distinctive structure of peat.
Rachael Akinyede, Martin Taubert, Marion Schrumpf, Susan Trumbore, and Kirsten Küsel
Biogeosciences, 19, 4011–4028, https://doi.org/10.5194/bg-19-4011-2022, https://doi.org/10.5194/bg-19-4011-2022, 2022
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Soils will likely become warmer in the future, and this can increase the release of carbon dioxide (CO2) into the atmosphere. As microbes can take up soil CO2 and prevent further escape into the atmosphere, this study compares the rate of uptake and release of CO2 at two different temperatures. With warming, the rate of CO2 uptake increases less than the rate of release, indicating that the capacity to modulate soil CO2 release into the atmosphere will decrease under future warming.
Giuseppe Cipolla, Salvatore Calabrese, Amilcare Porporato, and Leonardo V. Noto
Biogeosciences, 19, 3877–3896, https://doi.org/10.5194/bg-19-3877-2022, https://doi.org/10.5194/bg-19-3877-2022, 2022
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Enhanced weathering (EW) is a promising strategy for carbon sequestration. Since models may help to characterize field EW, the present work applies a hydro-biogeochemical model to four case studies characterized by different rainfall seasonality, vegetation and soil type. Rainfall seasonality strongly affects EW dynamics, but low carbon sequestration suggests that an in-depth analysis at the global scale is required to see if EW may be effective to mitigate climate change.
Vao Fenotiana Razanamahandry, Marjolein Dewaele, Gerard Govers, Liesa Brosens, Benjamin Campforts, Liesbet Jacobs, Tantely Razafimbelo, Tovonarivo Rafolisy, and Steven Bouillon
Biogeosciences, 19, 3825–3841, https://doi.org/10.5194/bg-19-3825-2022, https://doi.org/10.5194/bg-19-3825-2022, 2022
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In order to shed light on possible past vegetation shifts in the Central Highlands of Madagascar, we measured stable isotope ratios of organic carbon in soil profiles along both forested and grassland hillslope transects in the Lake Alaotra region. Our results show that the landscape of this region was more forested in the past: soils in the C4-dominated grasslands contained a substantial fraction of C3-derived carbon, increasing with depth.
Katherine E. O. Todd-Brown, Rose Z. Abramoff, Jeffrey Beem-Miller, Hava K. Blair, Stevan Earl, Kristen J. Frederick, Daniel R. Fuka, Mario Guevara Santamaria, Jennifer W. Harden, Katherine Heckman, Lillian J. Heran, James R. Holmquist, Alison M. Hoyt, David H. Klinges, David S. LeBauer, Avni Malhotra, Shelby C. McClelland, Lucas E. Nave, Katherine S. Rocci, Sean M. Schaeffer, Shane Stoner, Natasja van Gestel, Sophie F. von Fromm, and Marisa L. Younger
Biogeosciences, 19, 3505–3522, https://doi.org/10.5194/bg-19-3505-2022, https://doi.org/10.5194/bg-19-3505-2022, 2022
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Research data are becoming increasingly available online with tantalizing possibilities for reanalysis. However harmonizing data from different sources remains challenging. Using the soils community as an example, we walked through the various strategies that researchers currently use to integrate datasets for reanalysis. We find that manual data transcription is still extremely common and that there is a critical need for community-supported informatics tools like vocabularies and ontologies.
Alessandro Montemagno, Christophe Hissler, Victor Bense, Adriaan J. Teuling, Johanna Ziebel, and Laurent Pfister
Biogeosciences, 19, 3111–3129, https://doi.org/10.5194/bg-19-3111-2022, https://doi.org/10.5194/bg-19-3111-2022, 2022
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We investigated the biogeochemical processes that dominate the release and retention of elements (nutrients and potentially toxic elements) during litter degradation. Our results show that toxic elements are retained in the litter, while nutrients are released in solution during the first stages of degradation. This seems linked to the capability of trees to distribute the elements between degradation-resistant and non-degradation-resistant compounds of leaves according to their chemical nature.
Laura Sereni, Bertrand Guenet, Charlotte Blasi, Olivier Crouzet, Jean-Christophe Lata, and Isabelle Lamy
Biogeosciences, 19, 2953–2968, https://doi.org/10.5194/bg-19-2953-2022, https://doi.org/10.5194/bg-19-2953-2022, 2022
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This study focused on the modellisation of two important drivers of soil greenhouse gas emissions: soil contamination and soil moisture change. The aim was to include a Cu function in the soil biogeochemical model DNDC for different soil moisture conditions and then to estimate variation in N2O, NO2 or NOx emissions. Our results show a larger effect of Cu on N2 and N2O emissions than on the other nitrogen species and a higher effect for the soils incubated under constant constant moisture.
Marie Spohn and Johan Stendahl
Biogeosciences, 19, 2171–2186, https://doi.org/10.5194/bg-19-2171-2022, https://doi.org/10.5194/bg-19-2171-2022, 2022
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We explored the ratios of carbon (C), nitrogen (N), and phosphorus (P) of organic matter in Swedish forest soils. The N : P ratio of the organic layer was most strongly related to the mean annual temperature, while the C : N ratios of the organic layer and mineral soil were strongly related to tree species even in the subsoil. The organic P concentration in the mineral soil was strongly affected by soil texture, which diminished the effect of tree species on the C to organic P (C : OP) ratio.
Moritz Mainka, Laura Summerauer, Daniel Wasner, Gina Garland, Marco Griepentrog, Asmeret Asefaw Berhe, and Sebastian Doetterl
Biogeosciences, 19, 1675–1689, https://doi.org/10.5194/bg-19-1675-2022, https://doi.org/10.5194/bg-19-1675-2022, 2022
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The largest share of terrestrial carbon is stored in soils, making them highly relevant as regards global change. Yet, the mechanisms governing soil carbon stabilization are not well understood. The present study contributes to a better understanding of these processes. We show that qualitative changes in soil organic matter (SOM) co-vary with alterations of the soil matrix following soil weathering. Hence, the type of SOM that is stabilized in soils might change as soils develop.
Jasmin Fetzer, Emmanuel Frossard, Klaus Kaiser, and Frank Hagedorn
Biogeosciences, 19, 1527–1546, https://doi.org/10.5194/bg-19-1527-2022, https://doi.org/10.5194/bg-19-1527-2022, 2022
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As leaching is a major pathway of nitrogen and phosphorus loss in forest soils, we investigated several potential drivers in two contrasting beech forests. The composition of leachates, obtained by zero-tension lysimeters, varied by season, and climatic extremes influenced the magnitude of leaching. Effects of nitrogen and phosphorus fertilization varied with soil nutrient status and sorption properties, and leaching from the low-nutrient soil was more sensitive to environmental factors.
Karis J. McFarlane, Heather M. Throckmorton, Jeffrey M. Heikoop, Brent D. Newman, Alexandra L. Hedgpeth, Marisa N. Repasch, Thomas P. Guilderson, and Cathy J. Wilson
Biogeosciences, 19, 1211–1223, https://doi.org/10.5194/bg-19-1211-2022, https://doi.org/10.5194/bg-19-1211-2022, 2022
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Planetary warming is increasing seasonal thaw of permafrost, making this extensive old carbon stock vulnerable. In northern Alaska, we found more and older dissolved organic carbon in small drainages later in summer as more permafrost was exposed by deepening thaw. Younger and older carbon did not differ in chemical indicators related to biological lability suggesting this carbon can cycle through aquatic systems and contribute to greenhouse gas emissions as warming increases permafrost thaw.
Pengzhi Zhao, Daniel Joseph Fallu, Sara Cucchiaro, Paolo Tarolli, Clive Waddington, David Cockcroft, Lisa Snape, Andreas Lang, Sebastian Doetterl, Antony G. Brown, and Kristof Van Oost
Biogeosciences, 18, 6301–6312, https://doi.org/10.5194/bg-18-6301-2021, https://doi.org/10.5194/bg-18-6301-2021, 2021
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We investigate the factors controlling the soil organic carbon (SOC) stability and temperature sensitivity of abandoned prehistoric agricultural terrace soils. Results suggest that the burial of former topsoil due to terracing provided an SOC stabilization mechanism. Both the soil C : N ratio and SOC mineral protection regulate soil SOC temperature sensitivity. However, which mechanism predominantly controls SOC temperature sensitivity depends on the age of the buried terrace soils.
Heleen Deroo, Masuda Akter, Samuel Bodé, Orly Mendoza, Haichao Li, Pascal Boeckx, and Steven Sleutel
Biogeosciences, 18, 5035–5051, https://doi.org/10.5194/bg-18-5035-2021, https://doi.org/10.5194/bg-18-5035-2021, 2021
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We assessed if and how incorporation of exogenous organic carbon (OC) such as straw could affect decomposition of native soil organic carbon (SOC) under different irrigation regimes. Addition of exogenous OC promoted dissolution of native SOC, partly because of increased Fe reduction, leading to more net release of Fe-bound SOC. Yet, there was no proportionate priming of SOC-derived DOC mineralisation. Water-saving irrigation can retard both priming of SOC dissolution and mineralisation.
Frances A. Podrebarac, Sharon A. Billings, Kate A. Edwards, Jérôme Laganière, Matthew J. Norwood, and Susan E. Ziegler
Biogeosciences, 18, 4755–4772, https://doi.org/10.5194/bg-18-4755-2021, https://doi.org/10.5194/bg-18-4755-2021, 2021
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Soil respiration is a large and temperature-responsive flux in the global carbon cycle. We found increases in microbial use of easy to degrade substrates enhanced the temperature response of respiration in soils layered as they are in situ. This enhanced response is consistent with soil composition differences in warm relative to cold climate forests. These results highlight the importance of the intact nature of soils rarely studied in regulating responses of CO2 fluxes to changing temperature.
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