Articles | Volume 17, issue 4
https://doi.org/10.5194/bg-17-1087-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-17-1087-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
28 Feb 2020
Research article |
| 28 Feb 2020
| 28 Feb 2020
Dissolved inorganic nitrogen and particulate organic nitrogen budget in the Yucatán shelf: driving mechanisms through a physical–biogeochemical coupled model
Sheila N. Estrada-Allis
CORRESPONDING AUTHOR
Physical Oceanography Department, CICESE, Ensenada, Baja California, Mexico
Julio Sheinbaum Pardo
Physical Oceanography Department, CICESE, Ensenada, Baja California, Mexico
Joao M. Azevedo Correia de Souza
MetOcean Solutions/MetService, Raglan, New Zealand
Cecilia Elizabeth Enríquez Ortiz
ENES-Mérida, Facultad de Ciencias, Campus Yucatán, UNAM, Yucatán, Mexico
Ismael Mariño Tapia
Departamento Recursos del Mar, CINVESTAV, Mérida, Yucatán, Mexico
Jorge A. Herrera-Silveira
Departamento Recursos del Mar, CINVESTAV, Mérida, Yucatán, Mexico
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Christopher J. Roach, Joao Marcos A. C. de Souza, Erik Behrens, and Stephen J. Stuart
EGUsphere, https://doi.org/10.5194/egusphere-2024-1962, https://doi.org/10.5194/egusphere-2024-1962, 2024
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We have used a 5 km regional ocean model for New Zealand forced with a coarser resolution global model to project changes in under medium and high emissions scenarios. This is necessary since the global model is unable to resolve the small scale processes on the continental shelf which determine climate change may influence fisheries and aquaculture. We see the upper ocean warms at similar rates all around New Zealand, but that the deep ocean shows more rapid warming in the west and south.
Colette Gabrielle Kerry, Moninya Roughan, Shane Keating, David Gwyther, Gary Brassington, Adil Siripatana, and Joao Marcos A. C. Souza
Geosci. Model Dev., 17, 2359–2386, https://doi.org/10.5194/gmd-17-2359-2024, https://doi.org/10.5194/gmd-17-2359-2024, 2024
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Ocean forecasting relies on the combination of numerical models and ocean observations through data assimilation (DA). Here we assess the performance of two DA systems in a dynamic western boundary current, the East Australian Current, across a common modelling and observational framework. We show that the more advanced, time-dependent method outperforms the time-independent method for forecast horizons of 5 d. This advocates the use of advanced methods for highly variable oceanic regions.
José Gerardo Quintanilla, Juan Carlos Herguera, and Julio Sheinbaum
EGUsphere, https://doi.org/10.5194/egusphere-2023-751, https://doi.org/10.5194/egusphere-2023-751, 2023
Preprint archived
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The reduction of the oxygen concentration in the ocean interior is a worrisome global trend that can be harmful for the marine life. This study presents evidence that the central Gulf of Mexico waters at depths between 200 to 800 m has been affected by an oxygen reduction trend that might be aggravating under climate change. We show evidence that link this oxygen reduction to a decrease in the volume of water transported from the Caribbean in to the Gulf of Mexico via enormous ocean gyres.
Joao Marcos Azevedo Correia de Souza, Sutara H. Suanda, Phellipe P. Couto, Robert O. Smith, Colette Kerry, and Moninya Roughan
Geosci. Model Dev., 16, 211–231, https://doi.org/10.5194/gmd-16-211-2023, https://doi.org/10.5194/gmd-16-211-2023, 2023
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The current paper describes the configuration and evaluation of the Moana Ocean Hindcast, a > 25-year simulation of the ocean state around New Zealand using the Regional Ocean Modeling System v3.9. This is the first open-access, long-term, continuous, realistic ocean simulation for this region and provides information for improving the understanding of the ocean processes that affect the New Zealand exclusive economic zone.
Pierre Damien, Julio Sheinbaum, Orens Pasqueron de Fommervault, Julien Jouanno, Lorena Linacre, and Olaf Duteil
Biogeosciences, 18, 4281–4303, https://doi.org/10.5194/bg-18-4281-2021, https://doi.org/10.5194/bg-18-4281-2021, 2021
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The Gulf of Mexico deep waters are relatively poor in phytoplankton biomass due to low levels of nutrients in the upper layers. Using modeling techniques, we find that the long-living anticyclonic Loop Current eddies that are shed episodically from the Yucatan Channel strongly shape the distribution of phytoplankton and, more importantly, stimulate their growth. This results from the contribution of multiple mechanisms of physical–biogeochemical interactions discussed in this study.
Julien Jouanno, Rachid Benshila, Léo Berline, Antonin Soulié, Marie-Hélène Radenac, Guillaume Morvan, Frédéric Diaz, Julio Sheinbaum, Cristele Chevalier, Thierry Thibaut, Thomas Changeux, Frédéric Menard, Sarah Berthet, Olivier Aumont, Christian Ethé, Pierre Nabat, and Marc Mallet
Geosci. Model Dev., 14, 4069–4086, https://doi.org/10.5194/gmd-14-4069-2021, https://doi.org/10.5194/gmd-14-4069-2021, 2021
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The tropical Atlantic has been facing a massive proliferation of Sargassum since 2011, with severe environmental and socioeconomic impacts. We developed a modeling framework based on the NEMO ocean model, which integrates transport by currents and waves, and physiology of Sargassum with varying internal nutrient quota, and considers stranding at the coast. Results demonstrate the ability of the model to reproduce and forecast the seasonal cycle and large-scale distribution of Sargassum biomass.
Ruben R. Raygosa-Barahona, Sebastien Putzeys, Jorge Herrera, and Daniel Pech
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-56, https://doi.org/10.5194/bg-2019-56, 2019
Manuscript not accepted for further review
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The effects of tropical climatic conditions on a mesocosm enclosure were studied. An electric marine thruster is used to avoid stratification in the water. Also the mesocosms is submerged in water to maintain the temperature variations within reasonable ranges. With high variations of ambient temperature (> 20 ºC, during the day), the variations in the mesocosm temperature were only 3 ºC. The range of temperature variations were similar to those that occur in certain tropical environments.
Orens Pasqueron de Fommervault, Paula Perez-Brunius, Pierre Damien, Victor F. Camacho-Ibar, and Julio Sheinbaum
Biogeosciences, 14, 5647–5662, https://doi.org/10.5194/bg-14-5647-2017, https://doi.org/10.5194/bg-14-5647-2017, 2017
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The Gulf of Mexico is known to be characterized by a low abundance in phytoplankton. However, observations across the basin are scarce and prevent an accurate description of the mechanism controlling its distribution and dynamics. The recent deployment of autonomous profiling floats equipped with bio-optical sensors was a great opportunity to explore the phytoplankton in the Gulf Of Mexico. This study presents the analysis of this novel dataset.
Joao Marcos Azevedo Correia de Souza and Brian Powell
Ocean Sci., 13, 31–46, https://doi.org/10.5194/os-13-31-2017, https://doi.org/10.5194/os-13-31-2017, 2017
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The relevance of including the wave effect into a nearshore circulation model is discussed. Two different approaches are tested in the framework of an operational forecast system. It is shown that the waves are essential to represent the circulation patterns near the coast. While it seams to be ideal to consider the full coupling between surface waves and ocean currents, a computationally cheaper alternative is tested and shown to give equivalent qualitative results.
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Source-to-Sink Pathways of Dissolved Organic Carbon in the River-Estuary-Ocean Continuum: A Modeling Investigation
Unique ocean circulation pathways reshape the Indian Ocean oxygen minimum zone with warming
Contribution of the open ocean to the nutrient and phytoplankton inventory in a semi-enclosed coastal sea
The contrasted phytoplankton dynamics across a frontal system in the southwestern Mediterranean Sea
Sub-frontal niches of plankton communities driven by transport and trophic interactions at ocean fronts
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Satellite data reveal earlier and stronger phytoplankton blooms over fronts in the Gulf Stream region
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Spatiotemporal lagging of predictors improves machine learning estimates of atmosphere–forest CO2 exchange
Phytoplankton reaction to an intense storm in the north-western Mediterranean Sea
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A Bayesian sequential updating approach to predict phenology of silage maize
Using an oceanographic model to investigate the mystery of the missing puerulus
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Impact of moderately energetic fine-scale dynamics on the phytoplankton community structure in the western Mediterranean Sea
Seasonal ecosystem vulnerability to climatic anomalies in the Mediterranean
Grazing behavior and winter phytoplankton accumulation
Episodic subduction patches in the western North Pacific identified from BGC-Argo float data
Do Loop Current eddies stimulate productivity in the Gulf of Mexico?
Quasi-tropical cyclone caused anomalous autumn coccolithophore bloom in the Black Sea
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Robin Benjamin Zweigel, Avirmed Dashtseren, Khurelbaatar Temuujin, Anarmaa Sharkhuu, Clare Webster, Hanna Lee, and Sebastian Westermann
Biogeosciences, 21, 5059–5077, https://doi.org/10.5194/bg-21-5059-2024, https://doi.org/10.5194/bg-21-5059-2024, 2024
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Intense grazing at grassland sites removes vegetation, reduces the snow cover, and inhibits litter layers from forming. Grazed sites generally have a larger annual ground surface temperature amplitude than ungrazed sites, but the net effect depends on effects in the transitional seasons. Our results also suggest that seasonal use of pastures can reduce ground temperatures, which can be a strategy to protect currently degrading grassland permafrost.
Raquel González-Armas, Jordi Vilà-Guerau de Arellano, Mary Rose Mangan, Oscar Hartogensis, and Hugo de Boer
Biogeosciences, 21, 2425–2445, https://doi.org/10.5194/bg-21-2425-2024, https://doi.org/10.5194/bg-21-2425-2024, 2024
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Jialing Yao, Zhi Chen, Jianzhong Ge, and Wenyan Zhang
Biogeosciences Discuss., https://doi.org/10.5194/bg-2024-2, https://doi.org/10.5194/bg-2024-2, 2024
Revised manuscript accepted for BG
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The transformation of dissolved organic carbon (DOC) in estuaries is vital for costal carbon cycling. We studied source-to-sink pathways of DOC in the Changjiang Estuary using a physics-biogeochemistry model. Results showed a transition from sink to source of DOC in the plume area during summer, with a transition from terrestrial-dominant to marine-dominant. Terrigenous and marine DOC exports account for about 31 % and 69 %, respectively.
Sam Ditkovsky, Laure Resplandy, and Julius Busecke
Biogeosciences, 20, 4711–4736, https://doi.org/10.5194/bg-20-4711-2023, https://doi.org/10.5194/bg-20-4711-2023, 2023
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The global ocean is losing oxygen due to warming. The Indian Ocean, however, is gaining oxygen in large parts of the basin, and its naturally occurring oxygen minimum zone is not expanding. This rather unexpected response is explained by the unique ocean circulation of the Indian Ocean, which is bounded by a continent to the north but connected to the Pacific Ocean by the Indonesian Throughflow.
Qian Leng, Xinyu Guo, Junying Zhu, and Akihiko Morimoto
Biogeosciences, 20, 4323–4338, https://doi.org/10.5194/bg-20-4323-2023, https://doi.org/10.5194/bg-20-4323-2023, 2023
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Using a numerical model, we revealed that a large proportion of nutrients in a semi-enclosed sea (Seto Inland Sea, Japan) comes from the Pacific Ocean and supports about half of the phytoplankton growth in the sea. Such results imply that the human-made management of nutrient load from land needs to consider the presence of oceanic nutrients, which act as a background concentration and are not controlled by human activities.
Roxane Tzortzis, Andrea M. Doglioli, Monique Messié, Stéphanie Barrillon, Anne A. Petrenko, Lloyd Izard, Yuan Zhao, Francesco d'Ovidio, Franck Dumas, and Gérald Gregori
Biogeosciences, 20, 3491–3508, https://doi.org/10.5194/bg-20-3491-2023, https://doi.org/10.5194/bg-20-3491-2023, 2023
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We studied a finescale frontal structure in order to highlight its influence on the dynamics and distribution of phytoplankton communities. We computed the growth rates of several phytoplankton groups identified by flow cytometry in two water masses separated by the front. We found contrasted phytoplankton dynamics on the two sides of the front, consistent with the distribution of their abundances. Our study gives new insights into the physical and biological coupling on a finescale front.
Inès Mangolte, Marina Lévy, Clément Haëck, and Mark D. Ohman
Biogeosciences, 20, 3273–3299, https://doi.org/10.5194/bg-20-3273-2023, https://doi.org/10.5194/bg-20-3273-2023, 2023
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Ocean fronts are ecological hotspots, associated with higher diversity and biomass for many marine organisms, from bacteria to whales. Using in situ data from the California Current Ecosystem, we show that far from being limited to the production of diatom blooms, fronts are the scene of complex biophysical couplings between biotic interactions (growth, competition, and predation) and transport by currents that generate planktonic communities with an original taxonomic and spatial structure.
Jing-Ying Wu, Siou-Yan Lin, Jung-Fu Huang, Chen-Tung Arthur Chen, Jia-Jang Hung, Shao-Hung Peng, and Li-Lian Liu
Biogeosciences, 20, 2693–2706, https://doi.org/10.5194/bg-20-2693-2023, https://doi.org/10.5194/bg-20-2693-2023, 2023
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The shallow-water hydrothermal vents off the Kueishan Island, Taiwan, have the most extreme records of pH values (1.52), temperatures (116 °C), and H2S concentrations (172.4 mmol mol−1) in the world. White and yellow vents differ in the color and physical and chemical characteristics of emitted plumes. We found that the feeding habits of the endemic vent crabs (Xenograpsus testudinatus) are adapted to their resident vent types at a distance of 100 m, and the trans-vent movement is uncommon.
Clément Haëck, Marina Lévy, Inès Mangolte, and Laurent Bopp
Biogeosciences, 20, 1741–1758, https://doi.org/10.5194/bg-20-1741-2023, https://doi.org/10.5194/bg-20-1741-2023, 2023
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Phytoplankton vary in abundance in the ocean over large regions and with the seasons but also because of small-scale heterogeneities in surface temperature, called fronts. Here, using satellite imagery, we found that fronts enhance phytoplankton much more where it is already growing well, but despite large local increases the enhancement for the region is modest (5 %). We also found that blooms start 1 to 2 weeks earlier over fronts. These effects may have implications for ecosystems.
Cédric Bacour, Natasha MacBean, Frédéric Chevallier, Sébastien Léonard, Ernest N. Koffi, and Philippe Peylin
Biogeosciences, 20, 1089–1111, https://doi.org/10.5194/bg-20-1089-2023, https://doi.org/10.5194/bg-20-1089-2023, 2023
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The impact of assimilating different dataset combinations on regional to global-scale C budgets is explored with the ORCHIDEE model. Assimilating simultaneously multiple datasets is preferable to optimize the values of the model parameters and avoid model overfitting. The challenges in constraining soil C disequilibrium using atmospheric CO2 data are highlighted for an accurate prediction of the land sink distribution.
Matti Kämäräinen, Juha-Pekka Tuovinen, Markku Kulmala, Ivan Mammarella, Juha Aalto, Henriikka Vekuri, Annalea Lohila, and Anna Lintunen
Biogeosciences, 20, 897–909, https://doi.org/10.5194/bg-20-897-2023, https://doi.org/10.5194/bg-20-897-2023, 2023
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In this study, we introduce a new method for modeling the exchange of carbon between the atmosphere and a study site located in a boreal forest in southern Finland. Our method yields more accurate results than previous approaches in this context. Accurately estimating carbon exchange is crucial for gaining a better understanding of the role of forests in regulating atmospheric carbon and addressing climate change.
Stéphanie Barrillon, Robin Fuchs, Anne A. Petrenko, Caroline Comby, Anthony Bosse, Christophe Yohia, Jean-Luc Fuda, Nagib Bhairy, Frédéric Cyr, Andrea M. Doglioli, Gérald Grégori, Roxane Tzortzis, Francesco d'Ovidio, and Melilotus Thyssen
Biogeosciences, 20, 141–161, https://doi.org/10.5194/bg-20-141-2023, https://doi.org/10.5194/bg-20-141-2023, 2023
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Extreme weather events can have a major impact on ocean physics and biogeochemistry, but their study is challenging. In May 2019, an intense storm occurred in the north-western Mediterranean Sea, during which in situ multi-platform measurements were performed. The results show a strong impact on the surface phytoplankton, highlighting the need for high-resolution measurements coupling physics and biology during these violent events that may become more common in the context of global change.
Darren C. McKee, Scott C. Doney, Alice Della Penna, Emmanuel S. Boss, Peter Gaube, Michael J. Behrenfeld, and David M. Glover
Biogeosciences, 19, 5927–5952, https://doi.org/10.5194/bg-19-5927-2022, https://doi.org/10.5194/bg-19-5927-2022, 2022
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As phytoplankton (small, drifting photosynthetic organisms) drift with ocean currents, biomass accumulation rates should be evaluated in a Lagrangian (observer moves with a fluid parcel) as opposed to an Eulerian (observer is stationary) framework. Here, we use profiling floats and surface drifters combined with satellite data to analyse time and length scales of chlorophyll concentrations (a proxy for biomass) and of velocity to quantify how phytoplankton variability is related to water motion.
Karo Michaelian and Aleksandar Simeonov
Biogeosciences, 19, 4029–4034, https://doi.org/10.5194/bg-19-4029-2022, https://doi.org/10.5194/bg-19-4029-2022, 2022
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We reply to Lars Björn's critique of our article concerning the importance of photon dissipation to the origin and evolution of the biosphere. Björn doubts our assertion that organic pigments, ecosystems, and the biosphere arose out of a non-equilibrium thermodynamic imperative to increase global photon dissipation. He shows that the albedo of some non-living material is less than that of living material. We point out, however, that photon dissipation involves other factors besides albedo.
Reint Fischer, Delphine Lobelle, Merel Kooi, Albert Koelmans, Victor Onink, Charlotte Laufkötter, Linda Amaral-Zettler, Andrew Yool, and Erik van Sebille
Biogeosciences, 19, 2211–2234, https://doi.org/10.5194/bg-19-2211-2022, https://doi.org/10.5194/bg-19-2211-2022, 2022
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Since current estimates show that only about 1 % of the all plastic that enters the ocean is floating at the surface, we look at subsurface processes that can cause vertical movement of (micro)plastic. We investigate how modelled algal attachment and the ocean's vertical movement can cause particles to sink and oscillate in the open ocean. Particles can sink to depths of > 5000 m in regions with high wind intensity and mainly remain close to the surface with low winds and biological activity.
Michelle Viswanathan, Tobias K. D. Weber, Sebastian Gayler, Juliane Mai, and Thilo Streck
Biogeosciences, 19, 2187–2209, https://doi.org/10.5194/bg-19-2187-2022, https://doi.org/10.5194/bg-19-2187-2022, 2022
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We analysed the evolution of model parameter uncertainty and prediction error as we updated parameters of a maize phenology model based on yearly observations, by sequentially applying Bayesian calibration. Although parameter uncertainty was reduced, prediction quality deteriorated when calibration and prediction data were from different maize ripening groups or temperature conditions. The study highlights that Bayesian methods should account for model limitations and inherent data structures.
Jessica Kolbusz, Tim Langlois, Charitha Pattiaratchi, and Simon de Lestang
Biogeosciences, 19, 517–539, https://doi.org/10.5194/bg-19-517-2022, https://doi.org/10.5194/bg-19-517-2022, 2022
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Western rock lobster larvae spend up to 11 months in offshore waters before ocean currents and their ability to swim transport them back to the coast. In 2008, there was a reduction in the number of puerulus (larvae) settling into the fishery. We use an oceanographic model to see how the environment may have contributed to the reduction. Our results show that a combination of effects from local currents and a widespread quiet period in the ocean off WA likely led to less puerulus settlement.
Rémy Asselot, Frank Lunkeit, Philip B. Holden, and Inga Hense
Biogeosciences, 19, 223–239, https://doi.org/10.5194/bg-19-223-2022, https://doi.org/10.5194/bg-19-223-2022, 2022
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Previous studies show that phytoplankton light absorption can warm the atmosphere, but how this warming occurs is still unknown. We compare the importance of air–sea heat versus CO2 flux in the phytoplankton-induced atmospheric warming and determine the main driver. To shed light on this research question, we conduct simulations with a climate model of intermediate complexity. We show that phytoplankton mainly warms the atmosphere by increasing the air–sea CO2 flux.
Roxane Tzortzis, Andrea M. Doglioli, Stéphanie Barrillon, Anne A. Petrenko, Francesco d'Ovidio, Lloyd Izard, Melilotus Thyssen, Ananda Pascual, Bàrbara Barceló-Llull, Frédéric Cyr, Marc Tedetti, Nagib Bhairy, Pierre Garreau, Franck Dumas, and Gérald Gregori
Biogeosciences, 18, 6455–6477, https://doi.org/10.5194/bg-18-6455-2021, https://doi.org/10.5194/bg-18-6455-2021, 2021
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This work analyzes an original high-resolution data set collected in the Mediterranean Sea. The major result is the impact of a fine-scale frontal structure on the distribution of phytoplankton groups, in an area of moderate energy with oligotrophic conditions. Our results provide an in situ confirmation of the findings obtained by previous modeling studies and remote sensing about the structuring effect of the fine-scale ocean dynamics on the structure of the phytoplankton community.
Johannes Vogel, Eva Paton, and Valentin Aich
Biogeosciences, 18, 5903–5927, https://doi.org/10.5194/bg-18-5903-2021, https://doi.org/10.5194/bg-18-5903-2021, 2021
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This study investigates extreme ecosystem impacts evoked by temperature and soil moisture in the Mediterranean Basin for the time span 1999–2019 with a specific focus on seasonal variations. The analysis showed that ecosystem vulnerability is caused by several varying combinations of both drivers during the yearly cycle. The approach presented here helps to provide insights on the specific phenological stage of the year in which ecosystem vulnerability to a certain climatic condition occurs.
Mara Freilich, Alexandre Mignot, Glenn Flierl, and Raffaele Ferrari
Biogeosciences, 18, 5595–5607, https://doi.org/10.5194/bg-18-5595-2021, https://doi.org/10.5194/bg-18-5595-2021, 2021
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Observations reveal that in some regions phytoplankton biomass increases during the wintertime when growth conditions are sub-optimal, which has been attributed to a release from grazing during mixed layer deepening. Measurements of grazer populations to support this theory are lacking. We demonstrate that a release from grazing when the winter mixed layer is deepening holds only for certain grazing models, extending the use of phytoplankton observations to make inferences about grazer dynamics.
Shuangling Chen, Mark L. Wells, Rui Xin Huang, Huijie Xue, Jingyuan Xi, and Fei Chai
Biogeosciences, 18, 5539–5554, https://doi.org/10.5194/bg-18-5539-2021, https://doi.org/10.5194/bg-18-5539-2021, 2021
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Subduction transports surface waters to the oceanic interior, which can supply significant amounts of carbon and oxygen to the twilight zone. Using a novel BGC-Argo dataset covering the western North Pacific, we successfully identified the imprints of episodic shallow subduction patches. These subduction patches were observed mainly in spring and summer (70.6 %), and roughly half of them extended below ~ 450 m, injecting carbon- and oxygen-enriched waters into the ocean interior.
Pierre Damien, Julio Sheinbaum, Orens Pasqueron de Fommervault, Julien Jouanno, Lorena Linacre, and Olaf Duteil
Biogeosciences, 18, 4281–4303, https://doi.org/10.5194/bg-18-4281-2021, https://doi.org/10.5194/bg-18-4281-2021, 2021
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The Gulf of Mexico deep waters are relatively poor in phytoplankton biomass due to low levels of nutrients in the upper layers. Using modeling techniques, we find that the long-living anticyclonic Loop Current eddies that are shed episodically from the Yucatan Channel strongly shape the distribution of phytoplankton and, more importantly, stimulate their growth. This results from the contribution of multiple mechanisms of physical–biogeochemical interactions discussed in this study.
Sergey V. Stanichny, Elena A. Kubryakova, and Arseny A. Kubryakov
Biogeosciences, 18, 3173–3188, https://doi.org/10.5194/bg-18-3173-2021, https://doi.org/10.5194/bg-18-3173-2021, 2021
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In this paper, we show that the short-term impact of tropical cyclones can trigger the intense, long-term bloom of coccolithophores, which are major marine calcifiers playing an important role in the balance and fluxes of inorganic carbon in the ocean. In our paper, we describe the evolution of and physical reasons for such an unusual bloom observed in autumn 2005 in the Black Sea on the basis of satellite data.
Fengshan Liu, Ying Chen, Nini Bai, Dengpan Xiao, Huizi Bai, Fulu Tao, and Quansheng Ge
Biogeosciences, 18, 2275–2287, https://doi.org/10.5194/bg-18-2275-2021, https://doi.org/10.5194/bg-18-2275-2021, 2021
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The sowing date is key to the surface biophysical processes in the winter dormancy period. The climate effect of the sowing date shift is therefore very interesting and may contribute to the mitigation of climate change. An earlier sowing date always had a higher LAI but a higher temperature in the dormancy period and a lower temperature in the growth period. The main reason was the relative contributions of the surface albedo and energy partitioning processes.
Peter Aartsma, Johan Asplund, Arvid Odland, Stefanie Reinhardt, and Hans Renssen
Biogeosciences, 18, 1577–1599, https://doi.org/10.5194/bg-18-1577-2021, https://doi.org/10.5194/bg-18-1577-2021, 2021
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In the literature, it is generally assumed that alpine lichen heaths keep their direct environment cool due to their relatively high albedo. However, we reveal that the soil temperature and soil heat flux are higher below lichens than below shrubs during the growing season, despite a lower net radiation for lichens. We also show that the differences in microclimatic conditions between these two vegetation types are more pronounced during warm and sunny days than during cold and cloudy days.
Oleg Sizov, Ekaterina Ezhova, Petr Tsymbarovich, Andrey Soromotin, Nikolay Prihod'ko, Tuukka Petäjä, Sergej Zilitinkevich, Markku Kulmala, Jaana Bäck, and Kajar Köster
Biogeosciences, 18, 207–228, https://doi.org/10.5194/bg-18-207-2021, https://doi.org/10.5194/bg-18-207-2021, 2021
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In changing climate, tundra is expected to turn into shrubs and trees, diminishing reindeer pasture and increasing risks of tick-borne diseases. However, this transition may require a disturbance. Fires in Siberia are increasingly widespread. We studied wildfire dynamics and tundra–forest transition over 60 years in northwest Siberia near the Arctic Circle. Based on satellite data analysis, we found that transition occurs in 40 %–85 % of burned tundra compared to 5 %–15 % in non-disturbed areas.
Kaveh Purkiani, André Paul, Annemiek Vink, Maren Walter, Michael Schulz, and Matthias Haeckel
Biogeosciences, 17, 6527–6544, https://doi.org/10.5194/bg-17-6527-2020, https://doi.org/10.5194/bg-17-6527-2020, 2020
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There has been a steady increase in interest in mining of deep-sea minerals in the eastern Pacific Ocean recently. The ocean state in this region is known to be highly influenced by rotating bodies of water (eddies), some of which can travel long distances in the ocean and impact the deeper layers of the ocean. Better insight into the variability of eddy activity in this region is of great help to mitigate the impact of the benthic ecosystem from future potential deep-sea mining activity.
Jing Yan, Nathaniel A. Bogie, and Teamrat A. Ghezzehei
Biogeosciences, 17, 6377–6392, https://doi.org/10.5194/bg-17-6377-2020, https://doi.org/10.5194/bg-17-6377-2020, 2020
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An uneven supply of water and nutrients in soils often drives how plants behave. We observed that plants extract all their required nutrients from dry soil patches in sufficient quantity, provided adequate water is available elsewhere in the root zone. Roots in nutrient-rich dry patches facilitate the nutrient acquisition by extensive growth, water release, and modifying water retention in their immediate environment. The findings are valuable in managing nutrient losses in agricultural systems.
Onur Kerimoglu, Yoana G. Voynova, Fatemeh Chegini, Holger Brix, Ulrich Callies, Richard Hofmeister, Knut Klingbeil, Corinna Schrum, and Justus E. E. van Beusekom
Biogeosciences, 17, 5097–5127, https://doi.org/10.5194/bg-17-5097-2020, https://doi.org/10.5194/bg-17-5097-2020, 2020
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In this study, using extensive field observations and a numerical model, we analyzed the physical and biogeochemical structure of a coastal system following an extreme flood event. Our results suggest that a number of anomalous observations were driven by a co-occurrence of peculiar meteorological conditions and increased riverine discharges. Our results call for attention to the combined effects of hydrological and meteorological extremes that are anticipated to increase in frequency.
Amandine Erktan, Matthias C. Rillig, Andrea Carminati, Alexandre Jousset, and Stefan Scheu
Biogeosciences, 17, 4961–4980, https://doi.org/10.5194/bg-17-4961-2020, https://doi.org/10.5194/bg-17-4961-2020, 2020
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Soil aggregation is crucial for soil functioning. While the role of bacteria and fungi in soil aggregation is well established, how predators feeding on microbes modify soil aggregation has hardly been investigated. We showed for the first time that protists modify soil aggregation, presumably through changes in the production of bacterial mucilage, and that collembolans reduce soil aggregation, presumably by reducing the abundance of saprotrophic fungi.
Wei Hu, Kotaro Murata, Chunlan Fan, Shu Huang, Hiromi Matsusaki, Pingqing Fu, and Daizhou Zhang
Biogeosciences, 17, 4477–4487, https://doi.org/10.5194/bg-17-4477-2020, https://doi.org/10.5194/bg-17-4477-2020, 2020
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This paper reports the first estimate of the status of bacteria in long-distance-transported Asian dust, demonstrating that airborne dust, which can carry viable and nonviable bacteria on particle surfaces, is an efficient medium for constantly spreading bacteria at regional and even global scales. Such data are essential to better model and understand the roles and activities of bioaerosols in environmental evolution and climate change and the potential risks of bioaerosols to human health.
Inge Grünberg, Evan J. Wilcox, Simon Zwieback, Philip Marsh, and Julia Boike
Biogeosciences, 17, 4261–4279, https://doi.org/10.5194/bg-17-4261-2020, https://doi.org/10.5194/bg-17-4261-2020, 2020
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Based on topsoil temperature data for different vegetation types at a low Arctic tundra site, we found large small-scale variability. Winter temperatures were strongly influenced by vegetation through its effects on snow. Summer temperatures were similar below most vegetation types and not consistently related to late summer permafrost thaw depth. Given that vegetation type defines the relationship between winter and summer soil temperature and thaw depth, it controls permafrost vulnerability.
Long Jiang, Theo Gerkema, Jacco C. Kromkamp, Daphne van der Wal, Pedro Manuel Carrasco De La Cruz, and Karline Soetaert
Biogeosciences, 17, 4135–4152, https://doi.org/10.5194/bg-17-4135-2020, https://doi.org/10.5194/bg-17-4135-2020, 2020
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A seaward increasing chlorophyll-a gradient is observed during the spring bloom in a Dutch tidal bay. Biophysical model runs indicate the roles of bivalve grazing and tidal import in shaping the gradient. Five common spatial phytoplankton patterns are summarized in global estuarine–coastal ecosystems: seaward increasing, seaward decreasing, concave with a chlorophyll maximum, weak spatial gradients, and irregular patterns.
Emil De Borger, Justin Tiano, Ulrike Braeckman, Tom Ysebaert, and Karline Soetaert
Biogeosciences, 17, 1701–1715, https://doi.org/10.5194/bg-17-1701-2020, https://doi.org/10.5194/bg-17-1701-2020, 2020
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By applying a novel technique to quantify organism-induced sediment–water column fluid exchange (bioirrigation), we show that organisms in subtidal (permanently submerged) areas have similar bioirrigation rates as those that inhabit intertidal areas (not permanently submerged), but organisms in the latter irrigate deeper burrows in this study. Our results expand on traditional methods to quantify bioirrigation rates and broaden the pool of field measurements of bioirrigation rates.
Ashley Dubnick, Martin Sharp, Brad Danielson, Alireza Saidi-Mehrabad, and Joel Barker
Biogeosciences, 17, 963–977, https://doi.org/10.5194/bg-17-963-2020, https://doi.org/10.5194/bg-17-963-2020, 2020
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We found that glaciers with basal temperatures near the melting point mobilize more solutes, nutrients, and microbes from the underlying substrate and are more likely to promote in situ biogeochemical activity than glaciers with basal temperatures well below the melting point. The temperature at the base of glaciers is therefore an important control on the biogeochemistry of ice near glacier beds, and, ultimately, the potential solutes, nutrients, and microbes exported from glaciated watersheds.
Audrey Delpech, Anna Conchon, Olivier Titaud, and Patrick Lehodey
Biogeosciences, 17, 833–850, https://doi.org/10.5194/bg-17-833-2020, https://doi.org/10.5194/bg-17-833-2020, 2020
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Micronekton is an important, yet poorly known, component of the trophic chain, which partly contributes to the storage of CO2 in the deep ocean thanks to biomass vertical migrations. In this study, we characterize the ideal sampling regions to estimate the amount of biomass that undergoes theses migrations. We find that observations made in warm, nondynamic and productive waters reduce the error of the estimation by 20 %. This result should likely serve for future in situ network deployment.
Filippos Tagklis, Takamitsu Ito, and Annalisa Bracco
Biogeosciences, 17, 231–244, https://doi.org/10.5194/bg-17-231-2020, https://doi.org/10.5194/bg-17-231-2020, 2020
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Deoxygenation of the oceans is potentially one of the most severe ecosystem stressors resulting from global warming given the high sensitivity of dissolved oxygen to ocean temperatures. Climate models suggest that despite the thermodynamic tendency of the oceans to lose oxygen, certain regions experience significant changes in the biologically driven O2 consumption, resulting in a resistance against deoxygenation. Overturning circulation changes are responsible for such a behavior.
Mohammad Abdul Halim, Han Y. H. Chen, and Sean C. Thomas
Biogeosciences, 16, 4357–4375, https://doi.org/10.5194/bg-16-4357-2019, https://doi.org/10.5194/bg-16-4357-2019, 2019
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Using field data collected over 4 years across a range of stand ages, we investigated how seasonal surface albedo in boreal forest varies with stand age, stand structure, and composition. Our results indicate that successional change in species composition is a key driver of age–related patterns in albedo, with hardwood species associated with higher albedo. The patterns described have important implications for both climate modeling and
climate–smartboreal forest management.
Paul A. Moore, Maxwell C. Lukenbach, Dan K. Thompson, Nick Kettridge, Gustaf Granath, and James M. Waddington
Biogeosciences, 16, 3491–3506, https://doi.org/10.5194/bg-16-3491-2019, https://doi.org/10.5194/bg-16-3491-2019, 2019
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Using very-high-resolution digital elevation models (DEMs), we assessed the basic structure and microtopographic variability of hummock–hollow plots at boreal and hemi-boreal sites primarily in North America. Using a simple model of peatland biogeochemical function, our results suggest that both surface heating and moss productivity may not be adequately resolved in models which only consider idealized hummock–hollow units.
Renee K. Gruber, Ryan J. Lowe, and James L. Falter
Biogeosciences, 16, 1921–1935, https://doi.org/10.5194/bg-16-1921-2019, https://doi.org/10.5194/bg-16-1921-2019, 2019
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Researchers from the University of Western Australia's Oceans Institute are studying large tides (up to 12 m range) that occur in the Kimberley region of Australia. These tides flush coral reefs with water rich in nutrients, which supports the growth of reef organisms. In this paper, we show how tidal cycles and seasons control nutrient availability on reefs. This study is among the first published accounts of reefs and water quality data in the remote and pristine Kimberley region.
Sergey A. Marakushev and Ol'ga V. Belonogova
Biogeosciences, 16, 1817–1828, https://doi.org/10.5194/bg-16-1817-2019, https://doi.org/10.5194/bg-16-1817-2019, 2019
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Among the existing theories of the autotrophic origin of life, CO2 is usually considered to be the carbon source for nascent autotrophic metabolism. However, ancestral carbon used in metabolism may have been derived from CH4 if the outflow of magma fluid to the surface of the Earth consisted mainly of methane. The hydrothermal system model is considered in the form of a phase diagram, which demonstrates the area of redox and P and T conditions favorable to development of primary methanotroph.
Venugopal Thushara, Puthenveettil Narayana Menon Vinayachandran, Adrian J. Matthews, Benjamin G. M. Webber, and Bastien Y. Queste
Biogeosciences, 16, 1447–1468, https://doi.org/10.5194/bg-16-1447-2019, https://doi.org/10.5194/bg-16-1447-2019, 2019
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Chlorophyll distribution in the ocean remains to be explored in detail, despite its climatic significance. Here, we document the vertical structure of chlorophyll in the Bay of Bengal using observations and a model. The shape of chlorophyll profiles, characterized by prominent deep chlorophyll maxima, varies in dynamically different regions, controlled by the monsoonal forcings. The present study provides new insights into the vertical distribution of chlorophyll, rarely observed by satellites.
Soeren Thomsen, Johannes Karstensen, Rainer Kiko, Gerd Krahmann, Marcus Dengler, and Anja Engel
Biogeosciences, 16, 979–998, https://doi.org/10.5194/bg-16-979-2019, https://doi.org/10.5194/bg-16-979-2019, 2019
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Physical and biogeochemical observations from an autonomous underwater vehicle in combination with ship-based measurements are used to investigate remote and local drivers of the oxygen and nutrient variability off Mauritania. Beside the transport of oxygen and nutrients characteristics from remote areas towards Mauritania also local remineralization of organic material close to the seabed seems to be important for the distribution of oxygen and nutrients.
Pascale Bouruet-Aubertot, Yannis Cuypers, Andrea Doglioli, Mathieu Caffin, Christophe Yohia, Alain de Verneil, Anne Petrenko, Dominique Lefèvre, Hervé Le Goff, Gilles Rougier, Marc Picheral, and Thierry Moutin
Biogeosciences, 15, 7485–7504, https://doi.org/10.5194/bg-15-7485-2018, https://doi.org/10.5194/bg-15-7485-2018, 2018
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The OUTPACE cruise took place between New Caledonia and French Polynesia. The main purpose was to understand how micro-organisms can survive in a very poor environment. One main source of nutrients is at depth, below the euphotic layer where micro-organisms live. The purpose of the turbulence measurements was to determine to which extent turbulence may
upliftnutrients into the euphotic layer. The origin of the turbulence that was found contrasted along the transect was also determined.
Daniel D. Richter, Sharon A. Billings, Peter M. Groffman, Eugene F. Kelly, Kathleen A. Lohse, William H. McDowell, Timothy S. White, Suzanne Anderson, Dennis D. Baldocchi, Steve Banwart, Susan Brantley, Jean J. Braun, Zachary S. Brecheisen, Charles W. Cook, Hilairy E. Hartnett, Sarah E. Hobbie, Jerome Gaillardet, Esteban Jobbagy, Hermann F. Jungkunst, Clare E. Kazanski, Jagdish Krishnaswamy, Daniel Markewitz, Katherine O'Neill, Clifford S. Riebe, Paul Schroeder, Christina Siebe, Whendee L. Silver, Aaron Thompson, Anne Verhoef, and Ganlin Zhang
Biogeosciences, 15, 4815–4832, https://doi.org/10.5194/bg-15-4815-2018, https://doi.org/10.5194/bg-15-4815-2018, 2018
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As knowledge in biology and geology explodes, science becomes increasingly specialized. Given the overlap of the environmental sciences, however, the explosion in knowledge inevitably creates opportunities for interconnecting the biogeosciences. Here, 30 scientists emphasize the opportunities for biogeoscience collaborations across the world’s remarkable long-term environmental research networks that can advance science and engage larger scientific and public audiences.
Ivy Frenger, Matthias Münnich, and Nicolas Gruber
Biogeosciences, 15, 4781–4798, https://doi.org/10.5194/bg-15-4781-2018, https://doi.org/10.5194/bg-15-4781-2018, 2018
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Although mesoscale ocean eddies are ubiquitous in the Southern Ocean (SO), their regional and seasonal association with phytoplankton has not been quantified. We identify over 100 000 eddies and determine the associated phytoplankton biomass anomalies using satellite-based chlorophyll (Chl) as a proxy. The emerging Chl anomalies can be explained largely by lateral advection of Chl by eddies. This impact of eddies on phytoplankton may implicate downstream effects on SO biogeochemical properties.
Yi Sun, Xiong Z. He, Fujiang Hou, Zhaofeng Wang, and Shenghua Chang
Biogeosciences, 15, 4233–4243, https://doi.org/10.5194/bg-15-4233-2018, https://doi.org/10.5194/bg-15-4233-2018, 2018
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To investigate how grazing alters litter composition, quality and decomposition, we collected litter from grazing (GP) and grazing exclusion paddocks (GEP) and incubated them in situ and across sites. Grazing increased litter N and grazing exclusion increased litter mass of palatable species and promoted SOC. Litter decomposed faster in GP and N was opposite. Site environment had more impact on litter decomposition. Results may be helpful in developing strategies to restore degraded grasslands.
Louise Rousselet, Alain de Verneil, Andrea M. Doglioli, Anne A. Petrenko, Solange Duhamel, Christophe Maes, and Bruno Blanke
Biogeosciences, 15, 2411–2431, https://doi.org/10.5194/bg-15-2411-2018, https://doi.org/10.5194/bg-15-2411-2018, 2018
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The patterns of the large- and fine-scale surface circulation on biogeochemical and biological distributions are examined in the western tropical South Pacific (WTSP) in the context of the OUTPACE oceanographic cruise. The combined use of in situ and satellite data allows for the identification of water mass transport pathways and fine-scale structures, such as fronts, that drive surface distribution of tracers and microbial community structures.
Alain de Verneil, Louise Rousselet, Andrea M. Doglioli, Anne A. Petrenko, Christophe Maes, Pascale Bouruet-Aubertot, and Thierry Moutin
Biogeosciences, 15, 2125–2147, https://doi.org/10.5194/bg-15-2125-2018, https://doi.org/10.5194/bg-15-2125-2018, 2018
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Oceanographic campaigns to measure biogeochemical processes popularly deploy drifters with onboard incubations to stay in a single body of water. Here, we aggregate physical data taken during such a cruise, OUTPACE, to independently test in a new approach whether the drifter really stayed in what can be considered a single biological or chemical environment. This study concludes that future campaigns would benefit from similar data collection and analysis to validate their sampling strategy.
Cited articles
Anderson, T., Christian, J., and Flynn, K.: Modeling DOM Biogeochemistry, in:
Biogeochemistry of Marine Dissolved Organic Matter, Academic Press, Cambridge, Massachusetts, USA, 635–667, 2015. a
Anuario de Pesca 2017: Anuario Estadístico de Acuacultura y Pesca
Edición 2017 de la comisión nacional de acuacultura y pesca, Comisión anual de pesca, Mexico, 2017. a
Ashok, K. and Yamagata, T.: The El Niño with a difference, Nature, 461,
481–484, https://doi.org/10.1038/461481a, 2009. a
Ashok, K., Behera, S. K., Rao, S. A., Weng, H., and Yamagata, T.: El Niño
Modoki and its possible teleconnection, J. Geophys. Res., 112, C11007, https://doi.org/10.1029/2006JC003798, 2007. a
Azevedo Correia de Souza, J., Powell, B., Castillo-Trujillo, A. C., and
Flament, P.: The Vorticity Balance of the Ocean Surface in Hawaii from a
Regional Reanalysis, J. Phys. Oceanogr., 45, 424–440,
https://doi.org/10.1175/JPO-D-14-0074.1, 2015. a
Boccaletti, G., Ferrari, R., and Fox-Kemper, B.: Mixed Layer Instabilities and Restratification, J. Phys. Oceanogr., 37, 2228–2250, https://doi.org/10.1175/JPO3101.1, 2007. a
Boyer, T., Antonov, J. I., Baranova, O. K., Coleman, C., Garcia, H. E.,
Grodsky, A., Johnson, D. R., Locarnini, R. A., Mishonov, A. V., O'Brien, T.,
Paver, C., Reagan, J., Seidov, D., Smolyar, I. V., and Zweng, M. M.: World
Ocean Database 2013, in: NOAA Atlas NESDIS 72, Technical Ed., edited by: Levitus, S. and Mishonov, A., NOAA, Silver Spring, MD, 209 pp., https://doi.org/10.7289/V5NZ85MT, 2013. a
Candela, J., Sheinbaum, J., Ochoa, J., Badan, A., and Leben, R.: The potential vorticity flux through the Yucatan Channel and the Loop Current in the Gulf of Mexico,, Geophys. Res. Lett., 29, 2059, https://doi.org/10.1029/2002GL015587, 2002. a
Carrillo, L., Johns, E., Smith, R., Lamkin, J., and Largier, J.: Pathways and
hydrography in the Mesoamerican Barrier Reef System Part 2: Water masses and
thermohaline structure, Cont. Shelf Res., 120, 41–58,
https://doi.org/10.1016/j.csr.2016.03.014, 2016. a, b
Clarke, A. J.: Observational and numerical evidence for wind-forced coastal
trapped long waves, J. Phys. Oceanogr., 7, 231–247,
https://doi.org/10.1175/1520-0485(1977)007<0231:OANEFW>2.0.CO;2, 1977. a
Conan, P., Pujo-Pay, M., Agab, M., Calva-Benítez, L., Chifflet, S., Douillet, P., Dussud, C., Fichez, R., Grenz, C., Gutierrez-Mendieta, F., Origel-Moreno, M., Rodríguez-Blanco, R., Sauret, C., Severin, T., Tedetti, M., Torres-Alvarado, R., and Ghiglione, J. F.: Biogeochemical cycling and phyto- and bacterio-plankton communities in a large and shallow tropical lagoon (Términos Lagoon, Mexico) under 2009–2010 El Niño Modoki drought conditions, Biogeosciences, 14, 959–975, https://doi.org/10.5194/bg-14-959-2017, 2016. a, b, c
Cushman-Roisin, B. and Beckers, J.: Introduction to geophysical fluid dynamics: physical and numerical aspects, in: vol. 101, International Geophysical Series, 2nd Edn., Academic Press, Cambridge, Massachusetts, USA, 2011. a
Dee, D. P., Balmaseda, M., Balsamo, G., Engelen, R., Simmons, A. J., and
Thépaut, J.-N.: Toward a Consistent Reanalysis of the Climate System, B. Am. Meteorol. Soc., 95, 1235–1248, https://doi.org/10.1175/BAMS-D-13-00043.1, 2014. a
Ding, R., Huang, D., Xuan, J., Zhou, F., and Pohlmann, T.: Temporal and spatial variations of cross‐shelf nutrient exchange in the East China Sea, as
estimated by satellite altimetry and in situ measurements, J. Geophys. Res.-Oceans, 124, 1331–1356, https://doi.org/10.1029/2018JC014496, 2019. a
Druon, J., Mannino, A., Slgnorini, S., McClain, C., Friedrichs, M., Wilkin, J., and Fennel, K.: Modeling the dynamics and export of dissolved organic matter in the Northeastern US continental shelf, Estuar. Coast. Shelf Sci., 88, 488–507, 2010. a
Dubranna, J., Pérez-Brunius, P., López, M., and Candela, J.: Circulation over the continental shelf of the western and southwestern Gulf of Mexico, J. Geophys. Res., 116, C08009, https://doi.org/10.1029/2011JC007007, 2011. a, b
Dunn, D. D.: Trends in Nutrient Inflows to the Gulf of Mexico from Streams
Draining the Conterminous United States 1972–1993, US Geological Survey
Water-Resources Investigations Report 96-4113, US Geological Survey, Austin, Texas, 60 pp., 1996. a
Egbert, G. D. and Erofeeva, S. Y.: Efficient inverse modeling of barotropic
ocean tides, J. Atmos. Ocean. Tech., 19, 183–204, 2002. a
Enriquez, C., Mariño Tapia, I., and Herrera-Silveira, J.: Dispersion in the Yucatan coastal zone: Implications for red tide events, Cont. Shelf Res., 30, 127–137, https://doi.org/10.1016/j.csr.2009.10.005, 2010. a, b, c, d
Eppley, R. W.: Temperature and phytoplankton growth in the sea, Fish. Bull.,,
70, 1063–1085, 1972. a
Fairall, C. W., Bradley, E. F., Hare, J. E., Grachev, A. A., and Edson, J. B.: Bulk Parameterization of AirSea Fluxes: Updates and Verification for the
COARE Algorithm, J. Climate, 16, 571–591, 2003. a
Fasham, M. J. R., Ducklow, H. W., and McKelvie, S. M.: A nitrogen based model
of plankton dynamics in the oceanic mixed layer, J. Mar. Res., 48, 591–639, 1990. a
Fennel, K.: The role of continental shelves in nitrogen and carbon cycling:
Northwestern North Atlantic case study, Ocean Sci., 6, 539–548,
https://doi.org/10.5194/os-6-539-2010, 2010. a
Fennel, K., Wilkin, J., Levin, J., Moisan, J., O'Reilly, J., and Haidvogel,
D.: Nitrogen cycling in the Middle Atlantic Bight: results from a
three-dimensional model and implications for the North Atlantic nitrogen
budget, Global Biogeochem. Cy., 20, GB3007, https://doi.org/10.1029/2005GB002456, 2006. a, b, c, d, e, f, g, h, i, j, k
Fennel, K., Hetland, R., Feng, Y., and DiMarco, S.: A coupled physical-biological model of the Northern Gulf of Mexico shelf: model description, validation and analysis of phytoplankton variability, Biogeosciences, 8, 1881–1899, https://doi.org/10.5194/bg-8-1881-2011, 2011. a, b
Ferry, N., Parent, L., Garric, G., Drevillon, M., Desportes, C., Bricaud, C.,
and Hernandez, F.: Scientific Validation Report (ScVR) for reprocessed
analysis and reanalysis, MyOcean Project Rep., WP04-GLO-MERCATOR,
MYO-WP04-ScCV-rea-MERCATOR-V1.0, MyOcean, Toulouse, France, 2012. a
Fox-Kemper, B., Ferrari, R., and Hallberg, R.: Parameterization of Mixed Layer Eddies. Part I: Theory and Diagnosis, J. Phys. Oceanogr., 38, 1145–1165, https://doi.org/10.1175/2007JPO3792.1, 2008. a
Gallardo, A. and Marui, A.: Submarine groundwater discharge: an outlook of
recent advances and current knowledge, Geo-Mar. Lett., 26, 102–113, 2006. a
Gough, M. K., Beron-Vera, F. J., Olascoaga, M. J., Sheinbaum, J., Jouanno, J., and Duran, R.: Persistent transport pathways in the northwestern Gulf of
Mexico, J. Phys. Oceanogr., 49, 353–367, https://doi.org/10.1175/JPO-D-17-0207.1, 2019. a
Gutierrez-de Velasco, G. and Winant, D.: Seasonal patterns of wind stress and
stress curl over the Gulf of Mexico, J. Geophys. Res., 101, 18127–18140, 1996. a
Haidvogel, D. B. and Beckmann, A.: Numerical Ocean Circulation Modeling,
Imperial College Press, London, 1999. a
Hamilton, P., Bower, A., Furey, H., Leben, R., and Pérez-Brunius, P.: Deep Circulation in the Gulf of Mexico: A Lagrangian Study, OCS Study BOEM 2017-0xx. US Dept. of the Interior, Bureau of Ocean Energy Management, Gulf of Mexico OCS Region, New Orleans, LA, 285 pp., 2017. a
Hermann, A., Hinckley, S., Dobbins, E. L., Haidvogel, D. B., Bond, N. A.,
Mordy, C., Kachel, N., and Stabeno, P. J.: Quantifying cross-shelf and
vertical nutrient flux in the Coastal Gulf of Alaska with a spatially nested,
coupled biophysical model, Deep-Sea Res. Pt. II, 56, 2474–2486,
https://doi.org/10.1016/j.dsr2.2009.02.008, 2009. a, b
Herrera-Silveira, J. and Morales-Ojeda, S.: Subtropical Karstic Coastal Lagoon Assessment, Southeast Mexico, in: Coastal Lagoons, Marine Science,
CRC Press, Boca Raton, https://doi.org/10.1201/EBK1420088304, 2010. a, b
Hudson, P., Hendrickson, D., Benke, A., Varela-Romero, A., Rodiles-Hernández, R., and Minckley, W.: Rivers of Mexico, Rivers of North America, Elsevier Inc., Cambridge, Massachusetts, USA, 1030–1084, https://doi.org/10.1016/B978-012088253-3/50026-2, 2005. a
Huthnance, J.: Circulation, exchange and water masses at the ocean margin: the role of physical processes at the shelf edge, Prog. Oceanogr., 35, 353–431, https://doi.org/10.1016/0079-6611(95)00012-6, 1995. a
Kemp, G. P., Day, J. W., Yáñez-Arancibia, A., and Peyronnin, N. S.: Can Continental Shelf River Plumes in the Northern and Southern Gulf of Mexico Promote Ecological Resilience in a Time of Climate Change?, Water, 8, 83, https://doi.org/10.3390/w8030083, 2016. a, b
Levy, M., Iovino, D., Resplandy, L., Klein, P., Madec, G., Treguier, A.-M.,
Masson, S., and Takahashi, K.: Large-scale impacts of submesoscale dynamics
on phytoplankton: Local and remote effects, Ocean Model., 43–44, 77–93,
https://doi.org/10.1016/j.ocemod.2011.12.003, 2012. a
Liu, K.-K., Atkinson, L., Quinones, R., and Talaue-McManus, L.: Carbon and
Nutrient Fluxes in Continental Margins: A Global Synthesis, IGBP Book Series, Berlin, 2010. a
Mellor, G. and Yamada, T.: Development of a turbulence closure model for
geophysical fluid problems, Rev. Geophys., 20, 851–875, 1982. a
Ochoa, P., Sheinbaum, J., Badan, A., Candela, J., and Wilson, D.: Geostrophy
via potential vorticity inversion in the Yucatan Channel, J. Mar. Res., 59,
725–747, 2001. a
Pasqueron de Fommervault, O., D'Ortenzio, F., Mangin, A., Serra, R., Migon, C., Claustre, H., and Schmechtig, C.: Seasonal variability of nutrient
concentrations in the Mediterranean Sea: Contribution of Bio-Argo floats, J. Geophys. Res.-Oceans, 120, 8528–8550, https://doi.org/10.1002/2015JC011103, 2015. a
Pasqueron de Fommervault, O., Perez-Brunius, P., Damien, P., Camacho-Ibar, V. F., and Sheinbaum, J.: Temporal variability of chlorophyll distribution in the Gulf of Mexico: bio-optical data from profiling floats, Biogeosciences, 14, 5647–5662, https://doi.org/10.5194/bg-14-5647-2017, 2017. a, b, c
Pérez-Santos, I., Schneider, W., Sobarzo, M., Montoya-Sánchez, R.,
Valle-Levinson, A., and Garcés-Vargas, J.: Surface wind variability and its implications for the Yucatan basin‐Caribbean Sea dynamics, J. Geophys. Res., 115, C10052, https://doi.org/10.1029/2010JC006292, 2010. a, b
Perlin, A., Moum, J. N., Klymak, J. M., Levine, M. D., Boyd, T., and Kosro,
P. M.: Organization of stratification,turbulence, and veering in bottom Ekman
layers, J. Geophys. Res., 112, C05S90, https://doi.org/10.1029/2004JC002641, 2007. a
Poot-Delgado, C. A., Okolodkov, Y. B., Aké-Castillo, J. A., and von Osten, J. R.: Annual cycle of phytoplankton with emphasis on potentially harmful species in oyster beds of Terminos Lagoon, southeastern Gulf of Mexico, Revista de Biología Marina y Oceanografía, 50, 465–477,
https://doi.org/10.4067/S0718-19572015000400006, 2015. a, b, c
Pope, K. O., Ocampo, A. C., and Duller, C. E.: Mexican site for K/T impact
crater, Nature, 105, 351, https://doi.org/10.1038/351105a0, 1991. a
Portela, E., Tenreiro, M., Pallàs-Sanz, E., Meunier, T., Ruiz-Angulo, A.,
Sosa-Gutiérrez, R., and Cusí, S.: Hydrography of the central and western Gulf of Mexico, J. Geophys. Res., 123, 5134–5149, https://doi.org/10.1029/2018JC013813, 2018. a
Reyes-Mendoza, O., Mariño Tapia, I., Herrera-Silveira, J., Ruiz-Martínez, G., Enriquez, C., and Largier, J. L.: The Effects of Wind on Upwelling off Cabo Catoche, J. Coast. Res., 32, 638–650,
https://doi.org/10.2112/JCOASTRES-D-15-00043.1, 2016. a, b
Rio, M.-H., Mulet, S., and Picot, N.: Beyond GOCE for the ocean circulation
estimate: Synergetic use of altimetry, gravimetry, and in situ data provides
new insight into geostrophic and Ekman currents, Geophys. Res. Lett., 41,
8918–8925, https://doi.org/10.1002/2014GL061773, 2014. a
Rojas-Galaviz, J., Yaáñez Arancibia, A., Day, J., and Vera-Herrera, F.: Estuarine Primary Producers: Laguna de Terminos – a Study Case, in: Coastal Plant Communities of Latin America, edited by: Seeliger, U., Academic Press, San Diego, 1992. a
Roughan, M. and Middleton, J.: A comparison of observed upwelling mechanisms
off the east coast of Australia, Cont. Shelf Res., 22, 2551–2572,
https://doi.org/10.1016/S0278-4343(02)00101-2, 2002. a, b, c, d
Roughan, M. and Middleton, J.: On the East Australian Current: Variability,
encroachment, and upwelling, J. Geophys. Res., 109, C07003, https://doi.org/10.1029/2003JC001833, 2004. a, b
Sanvicente-Añorve, L., Zavala-Hidalgo, J., Allende-Arandía, M. E., and Hermoso-Salazar, M.: Connectivity patterns among coral reef systems in the southern Gulf of Mexico, Mar. Ecol. Prog. Ser., 498, 27–41,
https://doi.org/10.3354/meps10631, 2014. a
Seitzinger, S., Harrison, J. A., Böhlke, J. K., Bouwman, A. F., Lowrance,
R., Peterson, B., Tobias, C., and Drecht, G. V.: Denitrification across
landscapes and waterscapes: a synthesis, Ecol. Appl., 16, 2064–2090, https://doi.org/10.1890/1051-0761(2006)016[2064:DALAWA]2.0.CO;2, 2006. a
Shaeffer, A., Roughan, M., and Wood, J.: Observed bottom boundary layer
transport and uplift on the continental shelf adjacent to a western boundary
current, J. Geophys. Res.-Oceans, 119, 4922–4939, https://doi.org/10.1002/2013JC009735, 2014. a, b
Shchepetkin, A. F. and McWilliams, J. C.: The Regional Oceanic Modeling System (ROMS): a split-explicit, free-surface, topography-following-coordinate oceanic model, Ocean. Model., 9, 347–404, 2005. a
Shchepetkin, A. F. and McWilliams, J. C.: Correction and commentary for
“Ocean forecasting in terrain-following coordinates: Formulation and skill
assessment of the regional ocean modeling system” by Haidvogel et al. J.
Comp. Phys. 227, pp. 3595-3624, J. Comput. Phys., 228, 8985–9000, 2009. a
Sheinbaum, J., Candela, J., Badan, A., and Ochoa, J.: Flow structure and
transport in the Yucatan Channel, Geophys. Res. Lett., 29, 10-1–10-4, https://doi.org/10.1029/2001GL013990, 2002. a, b
Sheinbaum, J., Athié, G., Candela, J., Ochoa, J., and Romero-Arteaga, A.: Structure and variability of the Yucatan and loop currentsalong the slope and shelf break of the Yucatan channel and Campeche bank, Dynam. Atmos. Oceans, 76, 217–239, https://doi.org/10.1016/j.dynatmoce.2016.08.001, 2016. a, b, c, d, e, f, g, h, i, j
Troupin, C., Barth, A., Sirjacobs, D., Ouberdous, M., Brankart, J.-M.,
Brasseur, P., Rixen, M., Alvera Azcarate, A., Belounis, M., Capet, A., Lenartz, F., Toussaint, M.-E., and Beckers, J.-M.: Generation of analysis and
consistent error fields using the Data Interpolating Variational Analysis
(Diva), Ocean Model., 52-53, 90–101, https://doi.org/10.1016/j.ocemod.2012.05.002, 2012. a
Valle-Levinson, A., Mariõ Tapia, I., Enriquez, C., and Waterhouse, A.: Tidal variability of salinity and velocity field related to intense point sources submarine groundwater discharges into the coastal ocean, Limnol. Oceanogr., 56, 1213–1224, https://doi.org/10.4319/lo.2011.56.4.1213, 2011. a
Varela, R., Costoya, X., iquez, C. E., Santos, F., and Gomez-Gesteira, M.:
Differences in coastal and oceanic SST trends north of Yucatan Peninsula,
J. Mar. Syst., 182, 46–55, https://doi.org/10.1016/j.jmarsys.2018.03.006, 2018. a, b
Vignudelli, S., Kostianoy, A. G., Cipollini, P., and Benveniste, J.: Coastal
Altimetry, Springer, Berlin, Heidelberg, https://doi.org/10.1007/978-3-642-12796-0, 2011.
a, b
Zavala-Hidalgo, J., Romero-Centeno, R., Mateos-Jasso, A., Morey, S. L., and Martínez-López, B.: The response of the Gulf of Mexico to wind and heat flux forcing: What has been learned in recent years?, Atmósfera, 27, 317–334, https://doi.org/10.1016/S0187-6236(14)71119-1, 2014. a
Zhang, S., Stock, C. A., Curchitser, E. N., and Dussin, R.: A Numerical Model
Analysis of the Mean and Seasonal Nitrogen Budget on the Northeast U.S. Shelf, J. Geophys. Res.-Oceans, 124, 2969–2991, https://doi.org/10.1029/2018JC014308, 2019. a, b, c
Short summary
Continental shelves are the most productive areas in the ocean and can have an important impact on the nutrient cycle as well as the climate system. The one in Yucatán is the largest shelf in the Gulf of Mexico. However, its nutrient budget remains unidentifiable. Here we propose not only a general nutrient budget for the Yucatán Shelf but also the physical processes responsible for its pathway modulation through a physical–biogeochemical coupled model of the whole Gulf of Mexico.
Continental shelves are the most productive areas in the ocean and can have an important impact...
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