Articles | Volume 12, issue 16
https://doi.org/10.5194/bg-12-5143-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-12-5143-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
31 Aug 2015
Research article |
| 31 Aug 2015
Environmental forcing does not induce diel or synoptic variation in the carbon isotope content of forest soil respiration
Department of Biology, University of Utah, Salt Lake City, Utah, USA
J. E. Egan
Department of Earth Sciences, Dalhousie University, Halifax, Nova Scotia, Canada
S. J. Hall
Global Change and Sustainability Center, Univ. of Utah, Salt Lake City, Utah, USA
D. A. Risk
Department of Earth Sciences, St. Francis Xavier University, Antigonish, Nova Scotia, Canada
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Henrique F. Duarte, Brett M. Raczka, Daniel M. Ricciuto, John C. Lin, Charles D. Koven, Peter E. Thornton, David R. Bowling, Chun-Ta Lai, Kenneth J. Bible, and James R. Ehleringer
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Salt marshes play a big role in global carbon (C) storage, and C stock estimates are used to predict future changes. However, spatial and temporal gradients in C burial rates over the landscape exist due to variations in water inundation, dominant plant species and stage of growth, and tidal action. We quantified soil C concentrations in soil cores across time and space beside several porewater biogeochemical variables and discussed the controls on variability in soil C in salt marsh ecosystems.
Andrés Tangarife-Escobar, Georg Guggenberger, Xiaojuan Feng, Guohua Dai, Carolina Urbina-Malo, Mina Azizi-Rad, and Carlos A. Sierra
Biogeosciences, 21, 1277–1299, https://doi.org/10.5194/bg-21-1277-2024, https://doi.org/10.5194/bg-21-1277-2024, 2024
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Soil organic matter stability depends on future temperature and precipitation scenarios. We used radiocarbon (14C) data and model predictions to understand how the transit time of carbon varies under environmental change in grasslands and peatlands. Soil moisture affected the Δ14C of peatlands, while temperature did not have any influence. Our models show the correspondence between Δ14C and transit time and could allow understanding future interactions between terrestrial and atmospheric carbon
Marija Stojanova, Pierre Arbelet, François Baudin, Nicolas Bouton, Giovanni Caria, Lorenza Pacini, Nicolas Proix, Edouard Quibel, Achille Thin, and Pierre Barré
EGUsphere, https://doi.org/10.5194/egusphere-2024-578, https://doi.org/10.5194/egusphere-2024-578, 2024
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Because of its importance for climate regulation and soil health, many studies are focusing on carbon dynamics in soils. However, quantifying organic and inorganic carbon remains an issue in carbonated soils. In this technical note, we propose a validated correction method to quantify organic and inorganic carbon in soils using Rock-Eval® thermal analysis. With this correction, Rock-Eval® method has the potential to become the standard method for quantifying carbon in carbonate soils.
Emiko K. Stuart, Laura Castañeda-Gómez, Wolfram Buss, Jeff R. Powell, and Yolima Carrillo
Biogeosciences, 21, 1037–1059, https://doi.org/10.5194/bg-21-1037-2024, https://doi.org/10.5194/bg-21-1037-2024, 2024
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We inoculated wheat plants with various types of fungi whose impacts on soil carbon are poorly understood. After several months of growth, we examined both their impacts on soil carbon and the underlying mechanisms using multiple methods. Overall the fungi benefitted the storage of carbon in soil, mainly by improving the stability of pre-existing carbon, but several pathways were involved. This study demonstrates their importance for soil carbon storage and, therefore, climate change mitigation.
Huimin Sun, Michael W. I. Schmidt, Jintao Li, Jinquan Li, Xiang Liu, Nicholas O. E. Ofiti, Shurong Zhou, and Ming Nie
Biogeosciences, 21, 575–589, https://doi.org/10.5194/bg-21-575-2024, https://doi.org/10.5194/bg-21-575-2024, 2024
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A soil organic carbon (SOC) molecular structure suggested that the easily decomposable and stabilized SOC is similarly affected after 9-year warming and N treatments despite large changes in SOC stocks. Given the long residence time of some SOC, the similar loss of all measurable chemical forms of SOC under global change treatments could have important climate consequences.
Katherine E. Grant, Marisa N. Repasch, Kari M. Finstad, Julia D. Kerr, Maxwell A. T. Marple, Christopher J. Larson, Taylor A. B. Broek, Jennifer Pett-Ridge, and Karis J. McFarlane
EGUsphere, https://doi.org/10.5194/egusphere-2023-3125, https://doi.org/10.5194/egusphere-2023-3125, 2024
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Soils store organic carbon composed of different compounds from plants and microbes that stays in the soils for different lengths of time. To understand this process, we measure the time each carbon fraction is in a grassland soil profile. Our results show that the length of time each individual soil fraction is in our soil changes. Our approach allows a detailed look at the different components in soils. This study can help improve our understanding of soil dynamics.
Haoli Zhang, Doudou Chang, Zhifeng Zhu, Chunmei Meng, and Kaiyong Wang
Biogeosciences, 21, 1–11, https://doi.org/10.5194/bg-21-1-2024, https://doi.org/10.5194/bg-21-1-2024, 2024
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Soil salinity mediates microorganisms and soil processes like soil organic carbon (SOC) cycling. We observed that negative priming effects at the early stages might be due to the preferential utilization of cottonseed meal. The positive priming that followed decreased with the increase in salinity.
Joséphine Hazera, David Sebag, Isabelle Kowalewski, Eric Verrecchia, Herman Ravelojaona, and Tiphaine Chevallier
Biogeosciences, 20, 5229–5242, https://doi.org/10.5194/bg-20-5229-2023, https://doi.org/10.5194/bg-20-5229-2023, 2023
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This study adapts the Rock-Eval® protocol to quantify soil organic carbon (SOC) and soil inorganic carbon (SIC) on a non-pretreated soil aliquot. The standard protocol properly estimates SOC contents once the TOC parameter is corrected. However, it cannot complete the thermal breakdown of SIC amounts > 4 mg, leading to an underestimation of high SIC contents by the MinC parameter, even after correcting for this. Thus, the final oxidation isotherm is extended to 7 min to quantify any SIC amount.
Bo Zhao, Amin Dou, Zhiwei Zhang, Zhenyu Chen, Wenbo Sun, Yanli Feng, Xiaojuan Wang, and Qiang Wang
Biogeosciences, 20, 4761–4774, https://doi.org/10.5194/bg-20-4761-2023, https://doi.org/10.5194/bg-20-4761-2023, 2023
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This study provided a comprehensive analysis of the spatial variability and determinants of Fe-bound organic carbon (Fe-OC) among terrestrial, wetland, and marine ecosystems and its governing factors globally. We illustrated that reactive Fe was not only an important sequestration mechanism for OC in terrestrial ecosystems but also an effective “rusty sink” of OC preservation in wetland and marine ecosystems, i.e., a key factor for long-term OC storage in global ecosystems.
Han Sun, Tomoyasu Nishizawa, Hiroyuki Ohta, and Kazuhiko Narisawa
Biogeosciences, 20, 4737–4749, https://doi.org/10.5194/bg-20-4737-2023, https://doi.org/10.5194/bg-20-4737-2023, 2023
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In this research, we assessed the diversity and function of the dark septate endophytic (DSE) fungi community associated with Miscanthus condensatus root in volcanic ecosystems. Both metabarcoding and isolation were adopted in this study. We further validated effects on plant growth by inoculation of some core DSE isolates. This study helps improve our understanding of the role of Miscanthus condensatus-associated DSE fungi during the restoration of post-volcanic ecosystems.
Xianjin He, Laurent Augusto, Daniel S. Goll, Bruno Ringeval, Ying-Ping Wang, Julian Helfenstein, Yuanyuan Huang, and Enqing Hou
Biogeosciences, 20, 4147–4163, https://doi.org/10.5194/bg-20-4147-2023, https://doi.org/10.5194/bg-20-4147-2023, 2023
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We identified total soil P concentration as the most important predictor of all soil P pool concentrations, except for primary mineral P concentration, which is primarily controlled by soil pH and only secondarily by total soil P concentration. We predicted soil P pools’ distributions in natural systems, which can inform assessments of the role of natural P availability for ecosystem productivity, climate change mitigation, and the functioning of the Earth system.
Imane Slimani, Xia Zhu-Barker, Patricia Lazicki, and William Horwath
Biogeosciences, 20, 3873–3894, https://doi.org/10.5194/bg-20-3873-2023, https://doi.org/10.5194/bg-20-3873-2023, 2023
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There is a strong link between nitrogen availability and iron minerals in soils. These minerals have multiple outcomes for nitrogen availability depending on soil conditions and properties. For example, iron can limit microbial degradation of nitrogen in aerated soils but has opposing outcomes in non-aerated soils. This paper focuses on the multiple ways iron can affect nitrogen bioavailability in soils.
Peter Levy, Laura Bentley, Bridget Emmett, Angus Garbutt, Aidan Keith, Inma Lebron, and David Robinson
EGUsphere, https://doi.org/10.5194/egusphere-2023-1681, https://doi.org/10.5194/egusphere-2023-1681, 2023
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We collated a large data set (15790 soil cores) on soil carbon stock in different land uses. Soil carbon stocks were highest in woodlands and lowest in croplands. The variability in the effects were large. This has important implications for agri-environment schemes, seeking to sequester carbon in the soil by altering land use, because the effect of a given intervention is very hard to verify.
Shane W. Stoner, Marion Schrumpf, Alison Hoyt, Carlos A. Sierra, Sebastian Doetterl, Valier Galy, and Susan Trumbore
Biogeosciences, 20, 3151–3163, https://doi.org/10.5194/bg-20-3151-2023, https://doi.org/10.5194/bg-20-3151-2023, 2023
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Soils store more carbon (C) than any other terrestrial C reservoir, but the processes that control how much C stays in soil, and for how long, are very complex. Here, we used a recent method that involves heating soil in the lab to measure the range of C ages in soil. We found that most C in soil is decades to centuries old, while some stays for much shorter times (days to months), and some is thousands of years old. Such detail helps us to estimate how soil C may react to changing climate.
Adetunji Alex Adekanmbi, Laurence Dale, Liz Shaw, and Tom Sizmur
Biogeosciences, 20, 2207–2219, https://doi.org/10.5194/bg-20-2207-2023, https://doi.org/10.5194/bg-20-2207-2023, 2023
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The decomposition of soil organic matter and flux of carbon dioxide are expected to increase as temperatures rise. However, soil organic matter decomposition is a two-step process whereby large molecules are first broken down outside microbial cells and then respired within microbial cells. We show here that these two steps are not equally sensitive to increases in soil temperature and that global warming may cause a shift in the rate-limiting step from outside to inside the microbial cell.
Mercedes Román Dobarco, Alexandre M. J-C. Wadoux, Brendan Malone, Budiman Minasny, Alex B. McBratney, and Ross Searle
Biogeosciences, 20, 1559–1586, https://doi.org/10.5194/bg-20-1559-2023, https://doi.org/10.5194/bg-20-1559-2023, 2023
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Soil organic carbon (SOC) is of a heterogeneous nature and varies in chemistry, stabilisation mechanisms, and persistence in soil. In this study we mapped the stocks of SOC fractions with different characteristics and turnover rates (presumably PyOC >= MAOC > POC) across Australia, combining spectroscopy and digital soil mapping. The SOC stocks (0–30 cm) were estimated as 13 Pg MAOC, 2 Pg POC, and 5 Pg PyOC.
Frederick Büks
Biogeosciences, 20, 1529–1535, https://doi.org/10.5194/bg-20-1529-2023, https://doi.org/10.5194/bg-20-1529-2023, 2023
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Ultrasonication with density fractionation of soils is a commonly used method to separate soil organic matter pools, which is, e.g., important to calculate carbon turnover in landscapes. It is shown that the approach that merges soil and dense solution without mixing has a low recovery rate and causes co-extraction of parts of the retained labile pool along with the intermediate pool. An alternative method with high recovery rates and no cross-contamination was recommended.
Tino Peplau, Christopher Poeplau, Edward Gregorich, and Julia Schroeder
Biogeosciences, 20, 1063–1074, https://doi.org/10.5194/bg-20-1063-2023, https://doi.org/10.5194/bg-20-1063-2023, 2023
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We buried tea bags and temperature loggers in a paired-plot design in soils under forest and agricultural land and retrieved them after 2 years to quantify the effect of land-use change on soil temperature and litter decomposition in subarctic agricultural systems. We could show that agricultural soils were on average 2 °C warmer than forests and that litter decomposition was enhanced. The results imply that deforestation amplifies effects of climate change on soil organic matter dynamics.
Joseph Okello, Marijn Bauters, Hans Verbeeck, Samuel Bodé, John Kasenene, Astrid Françoys, Till Engelhardt, Klaus Butterbach-Bahl, Ralf Kiese, and Pascal Boeckx
Biogeosciences, 20, 719–735, https://doi.org/10.5194/bg-20-719-2023, https://doi.org/10.5194/bg-20-719-2023, 2023
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The increase in global and regional temperatures has the potential to drive accelerated soil organic carbon losses in tropical forests. We simulated climate warming by translocating intact soil cores from higher to lower elevations. The results revealed increasing temperature sensitivity and decreasing losses of soil organic carbon with increasing elevation. Our results suggest that climate warming may trigger enhanced losses of soil organic carbon from tropical montane forests.
Johanna Pihlblad, Louise C. Andresen, Catriona A. Macdonald, David S. Ellsworth, and Yolima Carrillo
Biogeosciences, 20, 505–521, https://doi.org/10.5194/bg-20-505-2023, https://doi.org/10.5194/bg-20-505-2023, 2023
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Elevated CO2 in the atmosphere increases forest biomass productivity when growth is not limited by soil nutrients. This study explores how mature trees stimulate soil availability of nitrogen and phosphorus with free-air carbon dioxide enrichment after 5 years of fumigation. We found that both nutrient availability and processes feeding available pools increased in the rhizosphere, and phosphorus increased at depth. This appears to not be by decomposition but by faster recycling of nutrients.
Rodrigo Vargas and Van Huong Le
Biogeosciences, 20, 15–26, https://doi.org/10.5194/bg-20-15-2023, https://doi.org/10.5194/bg-20-15-2023, 2023
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Quantifying the role of soils in nature-based solutions requires accurate estimates of soil greenhouse gas (GHG) fluxes. We suggest that multiple GHG fluxes should not be simultaneously measured at a few fixed time intervals, but an optimized sampling approach can reduce bias and uncertainty. Our results have implications for assessing GHG fluxes from soils and a better understanding of the role of soils in nature-based solutions.
Kristine Karstens, Benjamin Leon Bodirsky, Jan Philipp Dietrich, Marta Dondini, Jens Heinke, Matthias Kuhnert, Christoph Müller, Susanne Rolinski, Pete Smith, Isabelle Weindl, Hermann Lotze-Campen, and Alexander Popp
Biogeosciences, 19, 5125–5149, https://doi.org/10.5194/bg-19-5125-2022, https://doi.org/10.5194/bg-19-5125-2022, 2022
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Soil organic carbon (SOC) has been depleted by anthropogenic land cover change and agricultural management. While SOC models often simulate detailed biochemical processes, the management decisions are still little investigated at the global scale. We estimate that soils have lost around 26 GtC relative to a counterfactual natural state in 1975. Yet, since 1975, SOC has been increasing again by 4 GtC due to a higher productivity, recycling of crop residues and manure, and no-tillage practices.
Petri Kiuru, Marjo Palviainen, Arianna Marchionne, Tiia Grönholm, Maarit Raivonen, Lukas Kohl, and Annamari Laurén
Biogeosciences, 19, 5041–5058, https://doi.org/10.5194/bg-19-5041-2022, https://doi.org/10.5194/bg-19-5041-2022, 2022
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Peatlands are large carbon stocks. Emissions of carbon dioxide and methane from peatlands may increase due to changes in management and climate. We studied the variation in the gas diffusivity of peat with depth using pore network simulations and laboratory experiments. Gas diffusivity was found to be lower in deeper peat with smaller pores and lower pore connectivity. However, gas diffusivity was not extremely low in wet conditions, which may reflect the distinctive structure of peat.
Rachael Akinyede, Martin Taubert, Marion Schrumpf, Susan Trumbore, and Kirsten Küsel
Biogeosciences, 19, 4011–4028, https://doi.org/10.5194/bg-19-4011-2022, https://doi.org/10.5194/bg-19-4011-2022, 2022
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Soils will likely become warmer in the future, and this can increase the release of carbon dioxide (CO2) into the atmosphere. As microbes can take up soil CO2 and prevent further escape into the atmosphere, this study compares the rate of uptake and release of CO2 at two different temperatures. With warming, the rate of CO2 uptake increases less than the rate of release, indicating that the capacity to modulate soil CO2 release into the atmosphere will decrease under future warming.
Giuseppe Cipolla, Salvatore Calabrese, Amilcare Porporato, and Leonardo V. Noto
Biogeosciences, 19, 3877–3896, https://doi.org/10.5194/bg-19-3877-2022, https://doi.org/10.5194/bg-19-3877-2022, 2022
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Enhanced weathering (EW) is a promising strategy for carbon sequestration. Since models may help to characterize field EW, the present work applies a hydro-biogeochemical model to four case studies characterized by different rainfall seasonality, vegetation and soil type. Rainfall seasonality strongly affects EW dynamics, but low carbon sequestration suggests that an in-depth analysis at the global scale is required to see if EW may be effective to mitigate climate change.
Vao Fenotiana Razanamahandry, Marjolein Dewaele, Gerard Govers, Liesa Brosens, Benjamin Campforts, Liesbet Jacobs, Tantely Razafimbelo, Tovonarivo Rafolisy, and Steven Bouillon
Biogeosciences, 19, 3825–3841, https://doi.org/10.5194/bg-19-3825-2022, https://doi.org/10.5194/bg-19-3825-2022, 2022
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In order to shed light on possible past vegetation shifts in the Central Highlands of Madagascar, we measured stable isotope ratios of organic carbon in soil profiles along both forested and grassland hillslope transects in the Lake Alaotra region. Our results show that the landscape of this region was more forested in the past: soils in the C4-dominated grasslands contained a substantial fraction of C3-derived carbon, increasing with depth.
Katherine E. O. Todd-Brown, Rose Z. Abramoff, Jeffrey Beem-Miller, Hava K. Blair, Stevan Earl, Kristen J. Frederick, Daniel R. Fuka, Mario Guevara Santamaria, Jennifer W. Harden, Katherine Heckman, Lillian J. Heran, James R. Holmquist, Alison M. Hoyt, David H. Klinges, David S. LeBauer, Avni Malhotra, Shelby C. McClelland, Lucas E. Nave, Katherine S. Rocci, Sean M. Schaeffer, Shane Stoner, Natasja van Gestel, Sophie F. von Fromm, and Marisa L. Younger
Biogeosciences, 19, 3505–3522, https://doi.org/10.5194/bg-19-3505-2022, https://doi.org/10.5194/bg-19-3505-2022, 2022
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Research data are becoming increasingly available online with tantalizing possibilities for reanalysis. However harmonizing data from different sources remains challenging. Using the soils community as an example, we walked through the various strategies that researchers currently use to integrate datasets for reanalysis. We find that manual data transcription is still extremely common and that there is a critical need for community-supported informatics tools like vocabularies and ontologies.
Alessandro Montemagno, Christophe Hissler, Victor Bense, Adriaan J. Teuling, Johanna Ziebel, and Laurent Pfister
Biogeosciences, 19, 3111–3129, https://doi.org/10.5194/bg-19-3111-2022, https://doi.org/10.5194/bg-19-3111-2022, 2022
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We investigated the biogeochemical processes that dominate the release and retention of elements (nutrients and potentially toxic elements) during litter degradation. Our results show that toxic elements are retained in the litter, while nutrients are released in solution during the first stages of degradation. This seems linked to the capability of trees to distribute the elements between degradation-resistant and non-degradation-resistant compounds of leaves according to their chemical nature.
Laura Sereni, Bertrand Guenet, Charlotte Blasi, Olivier Crouzet, Jean-Christophe Lata, and Isabelle Lamy
Biogeosciences, 19, 2953–2968, https://doi.org/10.5194/bg-19-2953-2022, https://doi.org/10.5194/bg-19-2953-2022, 2022
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This study focused on the modellisation of two important drivers of soil greenhouse gas emissions: soil contamination and soil moisture change. The aim was to include a Cu function in the soil biogeochemical model DNDC for different soil moisture conditions and then to estimate variation in N2O, NO2 or NOx emissions. Our results show a larger effect of Cu on N2 and N2O emissions than on the other nitrogen species and a higher effect for the soils incubated under constant constant moisture.
Marie Spohn and Johan Stendahl
Biogeosciences, 19, 2171–2186, https://doi.org/10.5194/bg-19-2171-2022, https://doi.org/10.5194/bg-19-2171-2022, 2022
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We explored the ratios of carbon (C), nitrogen (N), and phosphorus (P) of organic matter in Swedish forest soils. The N : P ratio of the organic layer was most strongly related to the mean annual temperature, while the C : N ratios of the organic layer and mineral soil were strongly related to tree species even in the subsoil. The organic P concentration in the mineral soil was strongly affected by soil texture, which diminished the effect of tree species on the C to organic P (C : OP) ratio.
Moritz Mainka, Laura Summerauer, Daniel Wasner, Gina Garland, Marco Griepentrog, Asmeret Asefaw Berhe, and Sebastian Doetterl
Biogeosciences, 19, 1675–1689, https://doi.org/10.5194/bg-19-1675-2022, https://doi.org/10.5194/bg-19-1675-2022, 2022
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The largest share of terrestrial carbon is stored in soils, making them highly relevant as regards global change. Yet, the mechanisms governing soil carbon stabilization are not well understood. The present study contributes to a better understanding of these processes. We show that qualitative changes in soil organic matter (SOM) co-vary with alterations of the soil matrix following soil weathering. Hence, the type of SOM that is stabilized in soils might change as soils develop.
Jasmin Fetzer, Emmanuel Frossard, Klaus Kaiser, and Frank Hagedorn
Biogeosciences, 19, 1527–1546, https://doi.org/10.5194/bg-19-1527-2022, https://doi.org/10.5194/bg-19-1527-2022, 2022
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As leaching is a major pathway of nitrogen and phosphorus loss in forest soils, we investigated several potential drivers in two contrasting beech forests. The composition of leachates, obtained by zero-tension lysimeters, varied by season, and climatic extremes influenced the magnitude of leaching. Effects of nitrogen and phosphorus fertilization varied with soil nutrient status and sorption properties, and leaching from the low-nutrient soil was more sensitive to environmental factors.
Karis J. McFarlane, Heather M. Throckmorton, Jeffrey M. Heikoop, Brent D. Newman, Alexandra L. Hedgpeth, Marisa N. Repasch, Thomas P. Guilderson, and Cathy J. Wilson
Biogeosciences, 19, 1211–1223, https://doi.org/10.5194/bg-19-1211-2022, https://doi.org/10.5194/bg-19-1211-2022, 2022
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Planetary warming is increasing seasonal thaw of permafrost, making this extensive old carbon stock vulnerable. In northern Alaska, we found more and older dissolved organic carbon in small drainages later in summer as more permafrost was exposed by deepening thaw. Younger and older carbon did not differ in chemical indicators related to biological lability suggesting this carbon can cycle through aquatic systems and contribute to greenhouse gas emissions as warming increases permafrost thaw.
Pengzhi Zhao, Daniel Joseph Fallu, Sara Cucchiaro, Paolo Tarolli, Clive Waddington, David Cockcroft, Lisa Snape, Andreas Lang, Sebastian Doetterl, Antony G. Brown, and Kristof Van Oost
Biogeosciences, 18, 6301–6312, https://doi.org/10.5194/bg-18-6301-2021, https://doi.org/10.5194/bg-18-6301-2021, 2021
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We investigate the factors controlling the soil organic carbon (SOC) stability and temperature sensitivity of abandoned prehistoric agricultural terrace soils. Results suggest that the burial of former topsoil due to terracing provided an SOC stabilization mechanism. Both the soil C : N ratio and SOC mineral protection regulate soil SOC temperature sensitivity. However, which mechanism predominantly controls SOC temperature sensitivity depends on the age of the buried terrace soils.
Heleen Deroo, Masuda Akter, Samuel Bodé, Orly Mendoza, Haichao Li, Pascal Boeckx, and Steven Sleutel
Biogeosciences, 18, 5035–5051, https://doi.org/10.5194/bg-18-5035-2021, https://doi.org/10.5194/bg-18-5035-2021, 2021
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We assessed if and how incorporation of exogenous organic carbon (OC) such as straw could affect decomposition of native soil organic carbon (SOC) under different irrigation regimes. Addition of exogenous OC promoted dissolution of native SOC, partly because of increased Fe reduction, leading to more net release of Fe-bound SOC. Yet, there was no proportionate priming of SOC-derived DOC mineralisation. Water-saving irrigation can retard both priming of SOC dissolution and mineralisation.
Frances A. Podrebarac, Sharon A. Billings, Kate A. Edwards, Jérôme Laganière, Matthew J. Norwood, and Susan E. Ziegler
Biogeosciences, 18, 4755–4772, https://doi.org/10.5194/bg-18-4755-2021, https://doi.org/10.5194/bg-18-4755-2021, 2021
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Soil respiration is a large and temperature-responsive flux in the global carbon cycle. We found increases in microbial use of easy to degrade substrates enhanced the temperature response of respiration in soils layered as they are in situ. This enhanced response is consistent with soil composition differences in warm relative to cold climate forests. These results highlight the importance of the intact nature of soils rarely studied in regulating responses of CO2 fluxes to changing temperature.
Elisa Bruni, Bertrand Guenet, Yuanyuan Huang, Hugues Clivot, Iñigo Virto, Roberta Farina, Thomas Kätterer, Philippe Ciais, Manuel Martin, and Claire Chenu
Biogeosciences, 18, 3981–4004, https://doi.org/10.5194/bg-18-3981-2021, https://doi.org/10.5194/bg-18-3981-2021, 2021
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Increasing soil organic carbon (SOC) stocks is beneficial for climate change mitigation and food security. One way to enhance SOC stocks is to increase carbon input to the soil. We estimate the amount of carbon input required to reach a 4 % annual increase in SOC stocks in 14 long-term agricultural experiments around Europe. We found that annual carbon input should increase by 43 % under current temperature conditions, by 54 % for a 1 °C warming scenario and by 120 % for a 5 °C warming scenario.
Rainer Brumme, Bernd Ahrends, Joachim Block, Christoph Schulz, Henning Meesenburg, Uwe Klinck, Markus Wagner, and Partap K. Khanna
Biogeosciences, 18, 3763–3779, https://doi.org/10.5194/bg-18-3763-2021, https://doi.org/10.5194/bg-18-3763-2021, 2021
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In order to study the fate of litter nitrogen in forest soils, we combined a leaf litterfall exchange experiment using 15N-labeled leaf litter with long-term element budgets at seven European beech sites in Germany. It appears that fructification intensity, which has increased in recent decades, has a distinct impact on N retention in forest soils. Despite reduced nitrogen deposition, about 6 and 10 kg ha−1 of nitrogen were retained annually in the soils and in the forest stands, respectively.
Lorenz Gfeller, Andrea Weber, Isabelle Worms, Vera I. Slaveykova, and Adrien Mestrot
Biogeosciences, 18, 3445–3465, https://doi.org/10.5194/bg-18-3445-2021, https://doi.org/10.5194/bg-18-3445-2021, 2021
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Our incubation experiment shows that flooding of polluted floodplain soils may induce pulses of both mercury (Hg) and methylmercury to the soil solution and threaten downstream ecosystems. We demonstrate that mobilization of Hg bound to manganese oxides is a relevant process in organic-matter-poor soils. Addition of organic amendments accelerates this mobilization but also facilitates the formation of nanoparticulate Hg and the subsequent fixation of Hg from soil solution to the soil.
Yao Zhang, Jocelyn M. Lavallee, Andy D. Robertson, Rebecca Even, Stephen M. Ogle, Keith Paustian, and M. Francesca Cotrufo
Biogeosciences, 18, 3147–3171, https://doi.org/10.5194/bg-18-3147-2021, https://doi.org/10.5194/bg-18-3147-2021, 2021
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Soil organic matter (SOM) is essential for the health of soils, and the accumulation of SOM helps removal of CO2 from the atmosphere. Here we present the result of the continued development of a mathematical model that simulates SOM and its measurable fractions. In this study, we simulated several grassland sites in the US, and the model generally captured the carbon and nitrogen amounts in SOM and their distribution between the measurable fractions throughout the entire soil profile.
Zhongkui Luo, Raphael A. Viscarra-Rossel, and Tian Qian
Biogeosciences, 18, 2063–2073, https://doi.org/10.5194/bg-18-2063-2021, https://doi.org/10.5194/bg-18-2063-2021, 2021
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Using the data from 141 584 whole-soil profiles across the globe, we disentangled the relative importance of biotic, climatic and edaphic variables in controlling global SOC stocks. The results suggested that soil properties and climate contributed similarly to the explained global variance of SOC in four sequential soil layers down to 2 m. However, the most important individual controls are consistently soil-related, challenging current climate-driven framework of SOC dynamics.
Debjani Sihi, Xiaofeng Xu, Mónica Salazar Ortiz, Christine S. O'Connell, Whendee L. Silver, Carla López-Lloreda, Julia M. Brenner, Ryan K. Quinn, Jana R. Phillips, Brent D. Newman, and Melanie A. Mayes
Biogeosciences, 18, 1769–1786, https://doi.org/10.5194/bg-18-1769-2021, https://doi.org/10.5194/bg-18-1769-2021, 2021
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Humid tropical soils are important sources and sinks of methane. We used model simulation to understand how different kinds of microbes and observed soil moisture and oxygen dynamics contribute to production and consumption of methane along a wet tropical hillslope during normal and drought conditions. Drought alters the diffusion of oxygen and microbial substrates into and out of soil microsites, resulting in enhanced methane release from the entire hillslope during drought recovery.
Mathieu Chassé, Suzanne Lutfalla, Lauric Cécillon, François Baudin, Samuel Abiven, Claire Chenu, and Pierre Barré
Biogeosciences, 18, 1703–1718, https://doi.org/10.5194/bg-18-1703-2021, https://doi.org/10.5194/bg-18-1703-2021, 2021
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Evolution of organic carbon content in soils could be a major driver of atmospheric greenhouse gas concentrations over the next century. Understanding factors controlling carbon persistence in soil is a challenge. Our study of unique long-term bare-fallow samples, depleted in labile organic carbon, helps improve the separation, evaluation and characterization of carbon pools with distinct residence time in soils and gives insight into the mechanisms explaining soil organic carbon persistence.
Melisa A. Diaz, Christopher B. Gardner, Susan A. Welch, W. Andrew Jackson, Byron J. Adams, Diana H. Wall, Ian D. Hogg, Noah Fierer, and W. Berry Lyons
Biogeosciences, 18, 1629–1644, https://doi.org/10.5194/bg-18-1629-2021, https://doi.org/10.5194/bg-18-1629-2021, 2021
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Water-soluble salt and nutrient concentrations of soils collected along the Shackleton Glacier, Antarctica, show distinct geochemical gradients related to latitude, longitude, elevation, soil moisture, and distance from coast and glacier. Machine learning algorithms were used to estimate geochemical gradients for the region given the relationship with geography. Geography and surface exposure age drive salt and nutrient abundances, influencing invertebrate habitat suitability and biogeography.
Marion Schrumpf, Klaus Kaiser, Allegra Mayer, Günter Hempel, and Susan Trumbore
Biogeosciences, 18, 1241–1257, https://doi.org/10.5194/bg-18-1241-2021, https://doi.org/10.5194/bg-18-1241-2021, 2021
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A large amount of organic carbon (OC) in soil is protected against decay by bonding to minerals. We studied the release of mineral-bonded OC by NaF–NaOH extraction and H2O2 oxidation. Unexpectedly, extraction and oxidation removed mineral-bonded OC at roughly constant portions and of similar age distributions, irrespective of mineral composition, land use, and soil depth. The results suggest uniform modes of interactions between OC and minerals across soils in quasi-steady state with inputs.
Lena Rohe, Bernd Apelt, Hans-Jörg Vogel, Reinhard Well, Gi-Mick Wu, and Steffen Schlüter
Biogeosciences, 18, 1185–1201, https://doi.org/10.5194/bg-18-1185-2021, https://doi.org/10.5194/bg-18-1185-2021, 2021
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Total denitrification, i.e. N2O and (N2O + N2) fluxes, of repacked soil cores were analysed for different combinations of soils and water contents. Prediction accuracy of (N2O + N2) fluxes was highest with combined proxies for oxygen demand (CO2 flux) and oxygen supply (anaerobic soil volume fraction). Knowledge of denitrification completeness (product ratio) improved N2O predictions. Substitutions with cheaper proxies (soil organic matter, empirical diffusivity) reduced prediction accuracy.
Severin-Luca Bellè, Asmeret Asefaw Berhe, Frank Hagedorn, Cristina Santin, Marcus Schiedung, Ilja van Meerveld, and Samuel Abiven
Biogeosciences, 18, 1105–1126, https://doi.org/10.5194/bg-18-1105-2021, https://doi.org/10.5194/bg-18-1105-2021, 2021
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Controls of pyrogenic carbon (PyC) redistribution under rainfall are largely unknown. However, PyC mobility can be substantial after initial rain in post-fire landscapes. We conducted a controlled simulation experiment on plots where PyC was applied on the soil surface. We identified redistribution of PyC by runoff and splash and vertical movement in the soil depending on soil texture and PyC characteristics (material and size). PyC also induced changes in exports of native soil organic carbon.
Cited articles
Albert, M. R. and Hawley, R. L.: Seasonal changes in snow surface roughness characteristics at Summit, Greenland: implications for snow and firn ventilation, Ann. Glaciol., 35, 510–514, 2002.
Amiro, B. D.: Drag coefficients and turbulence spectra within three boreal forest canopies, Bound.-Lay. Meteorol., 52, 227–246, https://doi.org/10.1007/BF00122088, 1990.
Amundson, R., Stern, L., Baisden, T., and Wang, Y.: The isotopic composition of soil and soil-respired CO2, Geoderma, 82, 83–114, 1998.
Angert, A., Yakir, D., Rodeghiero, M., Preisler, Y., Davidson, E. A., and Weiner, T.: Using O2 to study the relationships between soil CO2 efflux and soil respiration, Biogeosciences, 12, 2089–2099, https://doi.org/10.5194/bg-12-2089-2015, 2015.
Aubrey, D. P. and Teskey, R. O.: Root-derived CO2 efflux via xylem stream rivals soil CO2 efflux, New Phytol., 184, 35–40, 2009.
Bahn, M., Schmitt, M., Siegwolf, R., Richter, A., and Brüggemann, N.: Does photosynthesis affect grassland soil-respired CO2 and its carbon isotope composition on a diurnal timescale?, New Phytol., 182, 451–460, 2009.
Baldocchi, D. D. and Meyers, T. P.: Trace gas exchange above the floor of a deciduous forest 1. Evaporation and CO2 efflux, J. Geophys. Res., 96, 7271–7285, 1991.
Ballantyne, A. P., Miller, J. B., Baker, I. T., Tans, P. P., and White, J. W. C.: Novel applications of carbon isotopes in atmospheric CO2: what can atmospheric measurements teach us about processes in the biosphere?, Biogeosciences, 8, 3093–3106, https://doi.org/10.5194/bg-8-3093-2011, 2011.
Bardgett, R. D., Freeman, C., and Ostle, N. J.: Microbial contributions to climate change through carbon cycle feedbacks, ISME J., 2, 805–814, https://doi.org/10.1038/ismej.2008.58, 2008.
Bird, J. A. and Torn, M. S.: Fine roots vs. Needles: A comparison of 13C and 15N dynamics in a ponderosa pine forest soil, Biogeochemistry, 79, 361–382, 2006.
Borken, W. and Matzner, E.: Reappraisal of drying and wetting effects on C and N mineralization and fluxes in soils, Glob. Change Biol., 15, 808–824, https://doi.org/10.1111/j.1365-2486.2008.01681.x, 2009.
Bowling, D. R. and Massman, W. J.: Persistent wind-induced enhancement of diffusive CO2 transport in a mountain forest snowpack, J. Geophys. Res., 116, 15 pp., https://doi.org/10.1029/2011JG001722, 2011.
Bowling, D. R., Pataki, D. E., and Randerson, J. T.: Carbon isotopes in terrestrial ecosystem pools and CO2 fluxes, New Phytol., 178, 24–40, https://doi.org/10.1111/j.1469-8137.2007.02342.x, 2008.
Bowling, D. R., Massman, W. J., Schaeffer, S. M., Burns, S. P., Monson, R. K., and Williams, M. W.: Biological and physical influences on the carbon isotope content of CO2 in a subalpine forest snowpack, Niwot Ridge, Colorado, Biogeochemistry, 95, 37–59, https://doi.org/10.1007/s10533-008-9233-4, 2009.
Bowling, D. R., Grote, E. E., and Belnap, J.: Rain pulse response of soil CO2 exchange by biological soil crusts and grasslands of the semiarid Colorado Plateau, United States, J. Geophys. Res.-Biogeo., 116, G03028, https://doi.org/10.1029/2011JG001643, 2011.
Bowling, D. R., Ballantyne, A. P., Miller, J. B., Burns, S. P., Conway, T. J., Menzer, O., Stephens, B. B., and Vaughn, B. H.: Ecological processes dominate the 13C land disequilibrium in a Rocky Mountain subalpine forest, Global Biogeochem. Cy., 28, 352–370, https://doi.org/10.1002/2013GB004686, 2014.
Brüggemann, N., Gessler, A., Kayler, Z., Keel, S. G., Badeck, F., Barthel, M., Boeckx, P., Buchmann, N., Brugnoli, E., Esperschütz, J., Gavrichkova, O., Ghashghaie, J., Gomez-Casanovas, N., Keitel, C., Knohl, A., Kuptz, D., Palacio, S., Salmon, Y., Uchida, Y., and Bahn, M.: Carbon allocation and carbon isotope fluxes in the plant-soil-atmosphere continuum: a review, Biogeosciences, 8, 3457–3489, https://doi.org/10.5194/bg-8-3457-2011, 2011.
Carbone, M. S., Czimczik, C. I., McDuffee, K. E., and Trumbore, S. E.: Allocation and residence time of photosynthetic products in a boreal forest using a low-level 14C pulse-chase labeling technique, Glob. Change Biol., 13, 466–477, 2007.
Cerling, T. E.: The stable isotopic composition of modern soil carbonate and its relationship to climate, Earth Planet. Sc. Lett., 71, 229–240, 1984.
Cerling, T. E., Solomon, D. K., Quade, J., and Bowman, J. R.: On the isotopic composition of carbon in soil carbon dioxide, Geochim. Cosmochim. Ac., 55, 3403–3405, 1991.
Clifton, A., Manes, C., Ruedi, J. D., Guala, M., and Lehning, M.: On shear-driven ventilation of snow, Bound.-Lay. Meteorol., 126, 249–261, 2008.
Cole, J. C. and Braddock, W. A.: Geologic Map of the Estes Park 30´ × 60´ Quadrangle, North-Central Colorado, USGS Scientific Investigations Map 3039, US Geological Survey, available at: http://pubs.usgs.gov/sim/3039/ (last access: 27 August 2015), 2009.
Conant, R. T., Ryan, M. G., Ågren, G. I., Birge, H. E., Davidson, E. A., Eliasson, P. E., Evans, S. E., Frey, S. D., Giardina, C. P., Hopkins, F. M., Hyvönen, R., Kirschbaum, M. U. F., Lavallee, J. M., Leifeld, J., Parton, W. J., Megan Steinweg, J., Wallenstein, M. D., Martin Wetterstedt, J. Å., and Bradford, M. A.: Temperature and soil organic matter decomposition rates – synthesis of current knowledge and a way forward, Glob. Change Biol., 17, 3392–3404, https://doi.org/10.1111/j.1365-2486.2011.02496.x, 2011.
Davidson, E. A. and Janssens, I. A.: Temperature sensitivity of soil carbon decomposition and feedbacks to climate change, Nature, 440, 165–173, 2006.
Davidson, E. A., Belk, E., and Boone, R. D.: Soil water content and temperature as independent or confounded factors controlling soil respiration in a temperate mixed hardwood forest, Glob. Change Biol., 4, 217–227, 1998.
Davidson, G. R.: The stable isotopic composition and measurement of carbon in soil CO2, Geochim. Cosmochim. Ac., 59, 2485–2489, https://doi.org/10.1016/0016-7037(95)00143-3, 1995.
Dijkstra, F. A. and Cheng, W.: Interactions between soil and tree roots accelerate long-term soil carbon decomposition, Ecol. Lett., 10, 1046–1053, 2007.
Ekblad, A. and Högberg, P.: Natural abundance of 13C in CO2 respired from forest soils reveals speed of link between tree photosynthesis and root respiration, Oecologia, 127, 305–308, 2001.
Epron, D., Bahn, M., Derrien, D., Lattanzi, F. A., Pumpanen, J., Gessler, A., Högberg, P., Maillard, P., Dannoura, M., Gérant, D., and Buchmann, N.: Pulse-labelling trees to study carbon allocation dynamics: a review of methods, current knowledge and future prospects, Tree Physiol., 32, 776–798, https://doi.org/10.1093/treephys/tps057, 2012.
Fang, C. and Moncrieff, J. B.: An open-top chamber for measuring soil respiration and the influence of pressure difference on CO2 efflux measurement, Funct. Ecol., 12, 319–325, 1998.
Fierer, N., Schimel, J. P., and Holden, P. A.: Influence of drying-rewetting frequency on soil bacterial community structure, Microb. Ecol., 45, 63–71, 2003.
Flechard, C. R., Neftel, A., Jocher, M., Ammann, C., Leifeld, J., and Fuhrer, J.: Temporal changes in soil pore space CO2 concentration and storage under permanent grassland, Agr. Forest Meteorol., 142, 66–84, 2007.
Formánek, P. and Ambus, P.: Assessing the use of δ13C natural abundance in separation of root and microbial respiration in a Danish beech (Fagus sylvatica L.) forest, Rapid Commun. Mass Sp., 18, 897–902, https://doi.org/10.1002/rcm.1424, 2004.
Friedlingstein, P., Meinshausen, M., Arora, V. K., Jones, C. D., Anav, A., Liddicoat, S. K., and Knutti, R.: Uncertainties in CMIP5 Climate Projections due to Carbon Cycle Feedbacks, J. Climate, 27, 511–526, https://doi.org/10.1175/JCLI-D-12-00579.1, 2014.
Fujiyoshi, R., Haraki, Y., Sumiyoshi, T., Amano, H., Kobal, I., and Vaupotic, J.: Tracing the sources of gaseous components (222Rn, CO2 and its carbon isotopes) in soil air under a cool-deciduous stand in Sapporo, Japan, Environ. Geochem. Hlth., 32, 73–82, 2010.
Gamnitzer, U., Moyes, A. B., Bowling, D. R., and Schnyder, H.: Measuring and modelling the isotopic composition of soil respiration: insights from a grassland tracer experiment, Biogeosciences, 8, 1333–1350, https://doi.org/10.5194/bg-8-1333-2011, 2011.
Ganot, Y., Dragila, M. I., and Weisbrod, N.: Impact of thermal convection on CO2 flux across the earth–atmosphere boundary in high-permeability soils, Agr. Forest Meteorol., 184, 12–24, https://doi.org/10.1016/j.agrformet.2013.09.001, 2014.
Ghashghaie, J. and Badeck, F. W.: Opposite carbon isotope discrimination during dark respiration in leaves versus roots – a review, New Phytol., 201, 751–769, https://doi.org/10.1111/nph.12563, 2014.
Goffin, S., Aubinet, M., Maier, M., Plain, C., Schack-Kirchner, H., and Longdoz, B.: Characterization of the soil CO2 production and its carbon isotope composition in forest soil layers using the flux-gradient approach, Agr. Forest Meteorol., 188, 45–57, https://doi.org/10.1016/j.agrformet.2013.11.005, 2014.
Heimann, M. and Reichstein, M.: Terrestrial ecosystem carbon dynamics and climate feedbacks, Nature, 451, 289–292, https://doi.org/10.1038/nature06591, 2008.
Högberg, P., Nordgren, A., Buchmann, N., Taylor, A. F. S., Ekblad, A., Högberg, M. N., Nyberg, G., Ottosson-Lofvenius, M., and Read, D. J.: Large-scale forest girdling shows that current photosynthesis drives soil respiration, Nature, 411, 789–792, 2001.
Högberg, P., Hogberg, M. N., Gottlicher, S. G., Betson, N. R., Keel, S. G., Metcalfe, D. B., Campbell, C., Schindlbacher, A., Hurry, V., Lundmark, T., Linder, S., and Nasholm, T.: High temporal resolution tracing of photosynthate carbon from the tree canopy to forest soil microorganisms, New Phytol., 177, 220–228, 2008.
Hopkins, F., Gonzalez-Meler, M. A., Flower, C. E., Lynch, D. J., Czimczik, C., Tang, J., and Subke, J.-A.: Ecosystem-level controls on root-rhizosphere respiration, New Phytol., 199, 339–351, https://doi.org/10.1111/nph.12271, 2013.
Irvine, J., Law, B. E., and Kurpius, M. R.: Coupling of canopy gas exchange with root and rhizosphere respiration in a semi-arid forest, Biogeochemistry, 73, 271–282, 2005.
Jarvis, P., Rey, A., Petsikos, C., Wingate, L., Rayment, M., Pereira, J., Banza, J., David, J., Miglietta, F., Borghetti, M., Manca, G., and Valentini, R.: Drying and wetting of Mediterranean soils stimulates decomposition and carbon dioxide emission: The "Birch effect," Tree Physiol., 27, 929–940, 2007.
Jassal, R., Black, A., Novak, M., Morgenstern, K., Nesic, Z., and Gaumont-Guay, D.: Relationship between soil CO2 concentrations and forest-floor CO2 effluxes, Agr. Forest Meteorol., 130, 176–192, https://doi.org/10.1016/j.agrformet.2005.03.005, 2005.
Keeling, C. D.: The concentration and isotopic abundances of atmospheric carbon dioxide in rural areas, Geochim. Cosmochim. Ac., 13, 322–334, 1958.
Kodama, N., Barnard, R., Salmon, Y., Weston, C., Ferrio, J., Holst, J., Werner, R., Saurer, M., Rennenberg, H., Buchmann, N., and Gessler, A.: Temporal dynamics of the carbon isotope composition in a Pinus sylvestris stand: from newly assimilated organic carbon to respired carbon dioxide, Oecologia, 156, 737–750, 2008.
Kuzyakov, Y.: Sources of CO2 efflux from soil and review of partitioning methods, Soil Biol. Biochem., 38, 425–448, https://doi.org/10.1016/j.soilbio.2005.08.020, 2006.
Kuzyakov, Y. and Gavrichkova, O.: REVIEW: Time lag between photosynthesis and carbon dioxide efflux from soil: a review of mechanisms and controls, Glob. Change Biol., 16, 3386–3406, https://doi.org/10.1111/j.1365-2486.2010.02179.x, 2010.
Lai, C.-T., Ehleringer, J. R., Schauer, A. J., Tans, P. P., Hollinger, D. Y., Paw U, K. T., Munger, J. W., and Wofsy, S. C.: Canopy-scale δ13C of photosynthetic and respiratory CO2 fluxes: observations in forest biomes across the United States, Glob. Change Biol., 11, 633–643, 2005.
Le Quéré, C., Andres, R. J., Boden, T., Conway, T., Houghton, R. A., House, J. I., Marland, G., Peters, G. P., van der Werf, G. R., Ahlström, A., Andrew, R. M., Bopp, L., Canadell, J. G., Ciais, P., Doney, S. C., Enright, C., Friedlingstein, P., Huntingford, C., Jain, A. K., Jourdain, C., Kato, E., Keeling, R. F., Klein Goldewijk, K., Levis, S., Levy, P., Lomas, M., Poulter, B., Raupach, M. R., Schwinger, J., Sitch, S., Stocker, B. D., Viovy, N., Zaehle, S., and Zeng, N.: The global carbon budget 1959–2011, Earth Syst. Sci. Data, 5, 165–185, https://doi.org/10.5194/essd-5-165-2013, 2013.
Lewis Jr., W. M., and Grant, M. C.: Changes in the Output of Ions from a Watershed as a Result of the Acidification of Precipitation, Ecology, 60, 1093–1097, https://doi.org/10.2307/1936955, 1979.
Lloyd, J. and Taylor, J. A.: On the temperature dependence of soil respiration, Funct. Ecol., 8, 315–323, 1994.
Maier, M., Schack-Kirchner, H., Hildebrand, E. E., and Holst, J.: Pore-space CO2 dynamics in a deep, well-aerated soil, Eur. J. Soil Sci., 61, 877–887, 2010.
Marron, N., Plain, C., Longdoz, B., and Epron, D.: Seasonal and daily time course of the 13C composition in soil CO2 efflux recorded with a tunable diode laser spectrophotometer (TDLS), Plant Soil, 318, 137–151, 2009.
Miller, J. B. and Tans, P. P.: Calculating isotopic fractionation from atmospheric measurements at various scales, Tellus, 55, 207–214, 2003.
Monson, R. K., Turnipseed, A. A., Sparks, J. P., Harley, P. C., Scott-Denton, L. E., Sparks, K., and Huxman, T. E.: Carbon sequestration in a high-elevation, subalpine forest, Glob. Change Biol., 8, 459–478, 2002.
Moyes, A. B. and Bowling, D. R.: Interannual variation in seasonal drivers of soil respiration in a semi-arid Rocky Mountain meadow, Biogeochemistry, 113, 683–697, https://doi.org/10.1007/s10533-012-9797-x, 2013.
Moyes, A. B., Gaines, S. J., Siegwolf, R. T. W., and Bowling, D. R.: Diffusive fractionation complicates isotopic partitioning of autotrophic and heterotrophic sources of soil respiration, Plant Cell Environ., 33, 1804–1819, https://doi.org/10.1111/j.1365-3040.2010.02185.x, 2010.
Nickerson, N., Egan, J., and Risk, D.: Subsurface approaches for measuring soil CO2 isotopologue flux: Theory and application, J. Geophys. Res.-Biogeo., 119, 614–629, https://doi.org/10.1002/2013JG002508, 2014.
Parent, F., Plain, C., Epron, D., Maier, M., and Longdoz, B.: A new method for continuously measuring the δ13C of soil CO2 concentrations at different depths by laser spectrometry, Eur. J. Soil Sci., 64, 516–525, https://doi.org/10.1111/ejss.12047, 2013.
Paterson, E., Midwood, A. J., and Millard, P.: Through the eye of the needle: a review of isotope approaches to quantify microbial processes mediating soil carbon balance, New Phytol., 184, 19–33, https://doi.org/10.1111/j.1469-8137.2009.03001.x, 2009.
Phillips, C. L., Nickerson, N., Risk, D., Kayler, Z. E., Andersen, C., Mix, A., and Bond, B. J.: Soil moisture effects on the carbon isotope composition of soil respiration, Rapid Commun. Mass Sp., 24, 1271–1280, 2010.
Phillips, C. L., Nickerson, N., Risk, D., and Bond, B. J.: Interpreting diel hysteresis between soil respiration and temperature, Glob. Change Biol., 17, 515–527, 2011.
Placella, S. A., Brodie, E. L., and Firestone, M. K.: Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups, P. Natl. Acad. Sci. USA, 109, 10931–10936, 2012.
Powers, H. H., Hunt, J. E., Hanson, D. T., and McDowell, N. G.: A dynamic soil chamber system coupled with a tunable diode laser for online measurements of δ13C, δ18O, and efflux rate of soil-respired CO2, Rapid Commun. Mass Sp., 24, 243–253, https://doi.org/10.1002/rcm.4380, 2010.
Querejeta, J. I., Egerton-Warburton, L. M., and Allen, M. F.: Direct nocturnal water transfer from oaks to their mycorrhizal symbionts during severe soil drying, Oecologia, 134, 55–64, 2003.
Raich, J. W. and Schlesinger, W. H.: The global carbon dioxide flux in soil respiration and its relationship to vegetation and climate, Tellus B, 44, 81–99, https://doi.org/10.3402/tellusb.v44i2.15428, 1992.
Rayment, M. B. and Jarvis, P. G.: An improved open chamber system for measuring soil CO2 effluxes in the field, J. Geophys. Res.-Atmos., 102, 28779–28784, 1997.
Riggs, A. C., Stannard, D. I., Maestas, F. B., Karlinger, M. R., and Striegl, R. G.: Soil CO2 flux in the Amargosa Desert, Nevada, during El Nino 1998 and La Nina 1999, US Geol. Surv. Sci. Investig. Rep. 2009–5061, available at: http://pubs.usgs.gov/sir/2009/5061/ (last access: 27 August 2015), 2009.
Risk, D., Nickerson, N., Phillips, C. L., Kellman, L. and Moroni, M.: Drought alters respired δ13CO2 from autotrophic, but not heterotrophic soil respiration, Soil Biol. Biochem., 50, 26–32, https://doi.org/10.1016/j.soilbio.2012.01.025, 2012.
Roland, M., Vicca, S., Bahn, M., Ladreiter-Knauss, T., Schmitt, M. and Janssens, I. A.: Importance of non-diffusive transport for soil CO2 efflux in a temperate mountain grassland, J. Geophys. Res.-Biogeo., 502–512, https://doi.org/10.1002/2014JG002788, 2015.
Sánchez-Cañete, E. P., Kowalski, A. S., Serrano-Ortiz, P., Pérez-Priego, O., and Domingo, F.: Deep CO2 soil inhalation / exhalation induced by synoptic pressure changes and atmospheric tides in a carbonated semiarid steppe, Biogeosciences, 10, 6591–6600, https://doi.org/10.5194/bg-10-6591-2013, 2013.
Savage, K., Davidson, E. A., and Tang, J.: Diel patterns of autotrophic and heterotrophic respiration among phenological stages, Glob. Change Biol., 19, 1151–1159, 2013.
Schaeffer, S. M., Miller, J. B., Vaughn, B. H., White, J. W. C., and Bowling, D. R.: Long-term field performance of a tunable diode laser absorption spectrometer for analysis of carbon isotopes of CO2 in forest air, Atmos. Chem. Phys., 8, 5263–5277, https://doi.org/10.5194/acp-8-5263-2008, 2008.
Scott-Denton, L. E., Sparks, K. L., and Monson, R. K.: Spatial and temporal controls of soil respiration rate in a high-elevation, subalpine forest, Soil Biol. Biochem., 35, 525–534, 2003.
Seok, B., Helmig, D., Williams, M. W., Liptzin, D., Chowanski, K., and Hueber, J.: An automated system for continuous measurements of trace gas fluxes through snow: An evaluation of the gas diffusion method at a subalpine forest site, Niwot Ridge, Colorado, Biogeochemistry, 95, 95–113, 2009.
Sommerfeld, R. A., Musselman, R. C., Reuss, J. O., and Mosier, A. R.: Preliminary measurements of CO2 in melting snow, Geophys. Res. Lett., 18, 1225–1228, 1991.
Staebler, R. M. and Fitzjarrald, D. R.: Measuring Canopy Structure and the Kinematics of Subcanopy Flows in Two Forests, J. Appl. Meteorol., 44, 1161–1179, https://doi.org/10.1175/JAM2265.1, 2005.
Subke, J. A., Reichstein, M., and Tenhunen, J. D.: Explaining temporal variation in soil CO2 efflux in a mature spruce forest in Southern Germany, Soil Biol. Biochem., 35, 1467–1483, 2003.
Tóta, J., Roy Fitzjarrald, D., and da Silva Dias, M. A. F.: Amazon Rainforest Exchange of Carbon and Subcanopy Air Flow: Manaus LBA Site – A Complex Terrain Condition, Sci. World J., 2012, 165067, https://doi.org/10.1100/2012/165067, 2012.
Unger, S., Máguas, C., Pereira, J. S., David, T. S., and Werner, C.: Interpreting post-drought rewetting effects on soil and ecosystem carbon dynamics in a Mediterranean oak savannah, Agr. Forest Meteorol., 154–155, 9–18, 2012.
Vickers, D. and Thomas, C. K.: Observations of the scale-dependent turbulence and evaluation of the flux-gradient relationship for sensible heat for a closed Douglas-fir canopy in very weak wind conditions, Atmos. Chem. Phys., 14, 9665–9676, https://doi.org/10.5194/acp-14-9665-2014, 2014.
Werner, C. and Gessler, A.: Diel variations in the carbon isotope composition of respired CO2 and associated carbon sources: a review of dynamics and mechanisms, Biogeosciences, 8, 2437–2459, https://doi.org/10.5194/bg-8-2437-2011, 2011.
Wingate, L., Ogee, J., Burlett, R., Bosc, A., Devaux, M., Grace, J., Loustau, D., and Gessler, A.: Photosynthetic carbon isotope discrimination and its relationship to the carbon isotope signals of stem, soil and ecosystem respiration, New Phytol., 188, 576–589, 2010.
Xiong, Y., D'Atri, J. J., Fu, S., Xia, H., and Seastedt, T. R.: Rapid soil organic matter loss from forest dieback in a subalpine coniferous ecosystem, Soil Biol. Biochem., 43, 2450–2456, 2011.
Xu, L. K., Furtaw, M. D., Madsen, R. A., Garcia, R. L., Anderson, D. J., and McDermitt, D. K.: On maintaining pressure equilibrium between a soil CO2 flux chamber and the ambient air, J. Geophys. Res.-Atmos., 111, D08S10, https://doi.org/10.1029/2005JD006435, 2006.
Short summary
Soil respiration and its stable isotopes were studied in a subalpine forest. There was strong diel variability in soil efflux but not in the isotope content of soil efflux or CO2 from biological activity in the soil. Following rain, soil efflux increased, but the isotope content of these fluxes did not change. Temporal variation in the isotope content of soil efflux was unrelated to environmental variables. Results confirmed established theory regarding diffusive soil gas transport.
Soil respiration and its stable isotopes were studied in a subalpine forest. There was strong...
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