Articles | Volume 13, issue 6
https://doi.org/10.5194/bg-13-1967-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-13-1967-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
31 Mar 2016
Research article |
| 31 Mar 2016
Physical and biogeochemical spatial scales of variability in the East Australian Current separation from shelf glider measurements
Amandine Schaeffer
CORRESPONDING AUTHOR
Coastal and Regional Oceanography Lab, School of Mathematics and Statistics,
University of New South Wales, Sydney NSW, Australia
Moninya Roughan
Coastal and Regional Oceanography Lab, School of Mathematics and Statistics,
University of New South Wales, Sydney NSW, Australia
Sydney Institute of Marine Science, Mosman, NSW 2088, Australia
Emlyn M. Jones
CSIRO Oceans and Atmosphere, Hobart, Tasmania, Australia
Dana White
Coastal and Regional Oceanography Lab, School of Mathematics and Statistics,
University of New South Wales, Sydney NSW, Australia
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The East Australian Current (EAC) plays an important role in the marine ecosystem and climate of the region. To understand the EAC regime and the inner shelf dynamics, we implement the variational approach to produce the first multi-year coastal radar dataset (2012–2023) in this region. The validated data allows for a comprehensive investigation of the EAC dynamics. This dataset will be useful for understanding the complex EAC regime and its far-reaching impacts on the shelf environment.
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We present new datasets that are useful for exploring extreme ocean temperature events in Australian coastal waters. These datasets span multiple decades, starting from the 1940s and 1950s, and include observations from the surface to the bottom at four coastal sites. The datasets provide valuable insights into the intensity, frequency and timing of extreme warm and cold temperature events and include event characteristics such as duration, onset and decline rates and their categorisation.
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The East Australian Current (EAC) plays an important role in the marine ecosystem and climate of the region. To understand the EAC regime and the inner shelf dynamics, we implement the variational approach to produce the first multi-year coastal radar dataset (2012–2023) in this region. The validated data allows for a comprehensive investigation of the EAC dynamics. This dataset will be useful for understanding the complex EAC regime and its far-reaching impacts on the shelf environment.
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The impact of assimilating different dataset combinations on regional to global-scale C budgets is explored with the ORCHIDEE model. Assimilating simultaneously multiple datasets is preferable to optimize the values of the model parameters and avoid model overfitting. The challenges in constraining soil C disequilibrium using atmospheric CO2 data are highlighted for an accurate prediction of the land sink distribution.
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Karo Michaelian and Aleksandar Simeonov
Biogeosciences, 19, 4029–4034, https://doi.org/10.5194/bg-19-4029-2022, https://doi.org/10.5194/bg-19-4029-2022, 2022
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We reply to Lars Björn's critique of our article concerning the importance of photon dissipation to the origin and evolution of the biosphere. Björn doubts our assertion that organic pigments, ecosystems, and the biosphere arose out of a non-equilibrium thermodynamic imperative to increase global photon dissipation. He shows that the albedo of some non-living material is less than that of living material. We point out, however, that photon dissipation involves other factors besides albedo.
Reint Fischer, Delphine Lobelle, Merel Kooi, Albert Koelmans, Victor Onink, Charlotte Laufkötter, Linda Amaral-Zettler, Andrew Yool, and Erik van Sebille
Biogeosciences, 19, 2211–2234, https://doi.org/10.5194/bg-19-2211-2022, https://doi.org/10.5194/bg-19-2211-2022, 2022
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Since current estimates show that only about 1 % of the all plastic that enters the ocean is floating at the surface, we look at subsurface processes that can cause vertical movement of (micro)plastic. We investigate how modelled algal attachment and the ocean's vertical movement can cause particles to sink and oscillate in the open ocean. Particles can sink to depths of > 5000 m in regions with high wind intensity and mainly remain close to the surface with low winds and biological activity.
Michelle Viswanathan, Tobias K. D. Weber, Sebastian Gayler, Juliane Mai, and Thilo Streck
Biogeosciences, 19, 2187–2209, https://doi.org/10.5194/bg-19-2187-2022, https://doi.org/10.5194/bg-19-2187-2022, 2022
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We analysed the evolution of model parameter uncertainty and prediction error as we updated parameters of a maize phenology model based on yearly observations, by sequentially applying Bayesian calibration. Although parameter uncertainty was reduced, prediction quality deteriorated when calibration and prediction data were from different maize ripening groups or temperature conditions. The study highlights that Bayesian methods should account for model limitations and inherent data structures.
Jessica Kolbusz, Tim Langlois, Charitha Pattiaratchi, and Simon de Lestang
Biogeosciences, 19, 517–539, https://doi.org/10.5194/bg-19-517-2022, https://doi.org/10.5194/bg-19-517-2022, 2022
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Western rock lobster larvae spend up to 11 months in offshore waters before ocean currents and their ability to swim transport them back to the coast. In 2008, there was a reduction in the number of puerulus (larvae) settling into the fishery. We use an oceanographic model to see how the environment may have contributed to the reduction. Our results show that a combination of effects from local currents and a widespread quiet period in the ocean off WA likely led to less puerulus settlement.
Rémy Asselot, Frank Lunkeit, Philip B. Holden, and Inga Hense
Biogeosciences, 19, 223–239, https://doi.org/10.5194/bg-19-223-2022, https://doi.org/10.5194/bg-19-223-2022, 2022
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Previous studies show that phytoplankton light absorption can warm the atmosphere, but how this warming occurs is still unknown. We compare the importance of air–sea heat versus CO2 flux in the phytoplankton-induced atmospheric warming and determine the main driver. To shed light on this research question, we conduct simulations with a climate model of intermediate complexity. We show that phytoplankton mainly warms the atmosphere by increasing the air–sea CO2 flux.
Roxane Tzortzis, Andrea M. Doglioli, Stéphanie Barrillon, Anne A. Petrenko, Francesco d'Ovidio, Lloyd Izard, Melilotus Thyssen, Ananda Pascual, Bàrbara Barceló-Llull, Frédéric Cyr, Marc Tedetti, Nagib Bhairy, Pierre Garreau, Franck Dumas, and Gérald Gregori
Biogeosciences, 18, 6455–6477, https://doi.org/10.5194/bg-18-6455-2021, https://doi.org/10.5194/bg-18-6455-2021, 2021
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This work analyzes an original high-resolution data set collected in the Mediterranean Sea. The major result is the impact of a fine-scale frontal structure on the distribution of phytoplankton groups, in an area of moderate energy with oligotrophic conditions. Our results provide an in situ confirmation of the findings obtained by previous modeling studies and remote sensing about the structuring effect of the fine-scale ocean dynamics on the structure of the phytoplankton community.
Johannes Vogel, Eva Paton, and Valentin Aich
Biogeosciences, 18, 5903–5927, https://doi.org/10.5194/bg-18-5903-2021, https://doi.org/10.5194/bg-18-5903-2021, 2021
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This study investigates extreme ecosystem impacts evoked by temperature and soil moisture in the Mediterranean Basin for the time span 1999–2019 with a specific focus on seasonal variations. The analysis showed that ecosystem vulnerability is caused by several varying combinations of both drivers during the yearly cycle. The approach presented here helps to provide insights on the specific phenological stage of the year in which ecosystem vulnerability to a certain climatic condition occurs.
Mara Freilich, Alexandre Mignot, Glenn Flierl, and Raffaele Ferrari
Biogeosciences, 18, 5595–5607, https://doi.org/10.5194/bg-18-5595-2021, https://doi.org/10.5194/bg-18-5595-2021, 2021
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Observations reveal that in some regions phytoplankton biomass increases during the wintertime when growth conditions are sub-optimal, which has been attributed to a release from grazing during mixed layer deepening. Measurements of grazer populations to support this theory are lacking. We demonstrate that a release from grazing when the winter mixed layer is deepening holds only for certain grazing models, extending the use of phytoplankton observations to make inferences about grazer dynamics.
Shuangling Chen, Mark L. Wells, Rui Xin Huang, Huijie Xue, Jingyuan Xi, and Fei Chai
Biogeosciences, 18, 5539–5554, https://doi.org/10.5194/bg-18-5539-2021, https://doi.org/10.5194/bg-18-5539-2021, 2021
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Subduction transports surface waters to the oceanic interior, which can supply significant amounts of carbon and oxygen to the twilight zone. Using a novel BGC-Argo dataset covering the western North Pacific, we successfully identified the imprints of episodic shallow subduction patches. These subduction patches were observed mainly in spring and summer (70.6 %), and roughly half of them extended below ~ 450 m, injecting carbon- and oxygen-enriched waters into the ocean interior.
Pierre Damien, Julio Sheinbaum, Orens Pasqueron de Fommervault, Julien Jouanno, Lorena Linacre, and Olaf Duteil
Biogeosciences, 18, 4281–4303, https://doi.org/10.5194/bg-18-4281-2021, https://doi.org/10.5194/bg-18-4281-2021, 2021
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The Gulf of Mexico deep waters are relatively poor in phytoplankton biomass due to low levels of nutrients in the upper layers. Using modeling techniques, we find that the long-living anticyclonic Loop Current eddies that are shed episodically from the Yucatan Channel strongly shape the distribution of phytoplankton and, more importantly, stimulate their growth. This results from the contribution of multiple mechanisms of physical–biogeochemical interactions discussed in this study.
Sergey V. Stanichny, Elena A. Kubryakova, and Arseny A. Kubryakov
Biogeosciences, 18, 3173–3188, https://doi.org/10.5194/bg-18-3173-2021, https://doi.org/10.5194/bg-18-3173-2021, 2021
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In this paper, we show that the short-term impact of tropical cyclones can trigger the intense, long-term bloom of coccolithophores, which are major marine calcifiers playing an important role in the balance and fluxes of inorganic carbon in the ocean. In our paper, we describe the evolution of and physical reasons for such an unusual bloom observed in autumn 2005 in the Black Sea on the basis of satellite data.
Fengshan Liu, Ying Chen, Nini Bai, Dengpan Xiao, Huizi Bai, Fulu Tao, and Quansheng Ge
Biogeosciences, 18, 2275–2287, https://doi.org/10.5194/bg-18-2275-2021, https://doi.org/10.5194/bg-18-2275-2021, 2021
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The sowing date is key to the surface biophysical processes in the winter dormancy period. The climate effect of the sowing date shift is therefore very interesting and may contribute to the mitigation of climate change. An earlier sowing date always had a higher LAI but a higher temperature in the dormancy period and a lower temperature in the growth period. The main reason was the relative contributions of the surface albedo and energy partitioning processes.
Peter Aartsma, Johan Asplund, Arvid Odland, Stefanie Reinhardt, and Hans Renssen
Biogeosciences, 18, 1577–1599, https://doi.org/10.5194/bg-18-1577-2021, https://doi.org/10.5194/bg-18-1577-2021, 2021
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In the literature, it is generally assumed that alpine lichen heaths keep their direct environment cool due to their relatively high albedo. However, we reveal that the soil temperature and soil heat flux are higher below lichens than below shrubs during the growing season, despite a lower net radiation for lichens. We also show that the differences in microclimatic conditions between these two vegetation types are more pronounced during warm and sunny days than during cold and cloudy days.
Oleg Sizov, Ekaterina Ezhova, Petr Tsymbarovich, Andrey Soromotin, Nikolay Prihod'ko, Tuukka Petäjä, Sergej Zilitinkevich, Markku Kulmala, Jaana Bäck, and Kajar Köster
Biogeosciences, 18, 207–228, https://doi.org/10.5194/bg-18-207-2021, https://doi.org/10.5194/bg-18-207-2021, 2021
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In changing climate, tundra is expected to turn into shrubs and trees, diminishing reindeer pasture and increasing risks of tick-borne diseases. However, this transition may require a disturbance. Fires in Siberia are increasingly widespread. We studied wildfire dynamics and tundra–forest transition over 60 years in northwest Siberia near the Arctic Circle. Based on satellite data analysis, we found that transition occurs in 40 %–85 % of burned tundra compared to 5 %–15 % in non-disturbed areas.
Kaveh Purkiani, André Paul, Annemiek Vink, Maren Walter, Michael Schulz, and Matthias Haeckel
Biogeosciences, 17, 6527–6544, https://doi.org/10.5194/bg-17-6527-2020, https://doi.org/10.5194/bg-17-6527-2020, 2020
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There has been a steady increase in interest in mining of deep-sea minerals in the eastern Pacific Ocean recently. The ocean state in this region is known to be highly influenced by rotating bodies of water (eddies), some of which can travel long distances in the ocean and impact the deeper layers of the ocean. Better insight into the variability of eddy activity in this region is of great help to mitigate the impact of the benthic ecosystem from future potential deep-sea mining activity.
Jing Yan, Nathaniel A. Bogie, and Teamrat A. Ghezzehei
Biogeosciences, 17, 6377–6392, https://doi.org/10.5194/bg-17-6377-2020, https://doi.org/10.5194/bg-17-6377-2020, 2020
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An uneven supply of water and nutrients in soils often drives how plants behave. We observed that plants extract all their required nutrients from dry soil patches in sufficient quantity, provided adequate water is available elsewhere in the root zone. Roots in nutrient-rich dry patches facilitate the nutrient acquisition by extensive growth, water release, and modifying water retention in their immediate environment. The findings are valuable in managing nutrient losses in agricultural systems.
Onur Kerimoglu, Yoana G. Voynova, Fatemeh Chegini, Holger Brix, Ulrich Callies, Richard Hofmeister, Knut Klingbeil, Corinna Schrum, and Justus E. E. van Beusekom
Biogeosciences, 17, 5097–5127, https://doi.org/10.5194/bg-17-5097-2020, https://doi.org/10.5194/bg-17-5097-2020, 2020
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In this study, using extensive field observations and a numerical model, we analyzed the physical and biogeochemical structure of a coastal system following an extreme flood event. Our results suggest that a number of anomalous observations were driven by a co-occurrence of peculiar meteorological conditions and increased riverine discharges. Our results call for attention to the combined effects of hydrological and meteorological extremes that are anticipated to increase in frequency.
Amandine Erktan, Matthias C. Rillig, Andrea Carminati, Alexandre Jousset, and Stefan Scheu
Biogeosciences, 17, 4961–4980, https://doi.org/10.5194/bg-17-4961-2020, https://doi.org/10.5194/bg-17-4961-2020, 2020
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Soil aggregation is crucial for soil functioning. While the role of bacteria and fungi in soil aggregation is well established, how predators feeding on microbes modify soil aggregation has hardly been investigated. We showed for the first time that protists modify soil aggregation, presumably through changes in the production of bacterial mucilage, and that collembolans reduce soil aggregation, presumably by reducing the abundance of saprotrophic fungi.
Wei Hu, Kotaro Murata, Chunlan Fan, Shu Huang, Hiromi Matsusaki, Pingqing Fu, and Daizhou Zhang
Biogeosciences, 17, 4477–4487, https://doi.org/10.5194/bg-17-4477-2020, https://doi.org/10.5194/bg-17-4477-2020, 2020
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This paper reports the first estimate of the status of bacteria in long-distance-transported Asian dust, demonstrating that airborne dust, which can carry viable and nonviable bacteria on particle surfaces, is an efficient medium for constantly spreading bacteria at regional and even global scales. Such data are essential to better model and understand the roles and activities of bioaerosols in environmental evolution and climate change and the potential risks of bioaerosols to human health.
Inge Grünberg, Evan J. Wilcox, Simon Zwieback, Philip Marsh, and Julia Boike
Biogeosciences, 17, 4261–4279, https://doi.org/10.5194/bg-17-4261-2020, https://doi.org/10.5194/bg-17-4261-2020, 2020
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Based on topsoil temperature data for different vegetation types at a low Arctic tundra site, we found large small-scale variability. Winter temperatures were strongly influenced by vegetation through its effects on snow. Summer temperatures were similar below most vegetation types and not consistently related to late summer permafrost thaw depth. Given that vegetation type defines the relationship between winter and summer soil temperature and thaw depth, it controls permafrost vulnerability.
Long Jiang, Theo Gerkema, Jacco C. Kromkamp, Daphne van der Wal, Pedro Manuel Carrasco De La Cruz, and Karline Soetaert
Biogeosciences, 17, 4135–4152, https://doi.org/10.5194/bg-17-4135-2020, https://doi.org/10.5194/bg-17-4135-2020, 2020
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A seaward increasing chlorophyll-a gradient is observed during the spring bloom in a Dutch tidal bay. Biophysical model runs indicate the roles of bivalve grazing and tidal import in shaping the gradient. Five common spatial phytoplankton patterns are summarized in global estuarine–coastal ecosystems: seaward increasing, seaward decreasing, concave with a chlorophyll maximum, weak spatial gradients, and irregular patterns.
Emil De Borger, Justin Tiano, Ulrike Braeckman, Tom Ysebaert, and Karline Soetaert
Biogeosciences, 17, 1701–1715, https://doi.org/10.5194/bg-17-1701-2020, https://doi.org/10.5194/bg-17-1701-2020, 2020
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By applying a novel technique to quantify organism-induced sediment–water column fluid exchange (bioirrigation), we show that organisms in subtidal (permanently submerged) areas have similar bioirrigation rates as those that inhabit intertidal areas (not permanently submerged), but organisms in the latter irrigate deeper burrows in this study. Our results expand on traditional methods to quantify bioirrigation rates and broaden the pool of field measurements of bioirrigation rates.
Sheila N. Estrada-Allis, Julio Sheinbaum Pardo, Joao M. Azevedo Correia de Souza, Cecilia Elizabeth Enríquez Ortiz, Ismael Mariño Tapia, and Jorge A. Herrera-Silveira
Biogeosciences, 17, 1087–1111, https://doi.org/10.5194/bg-17-1087-2020, https://doi.org/10.5194/bg-17-1087-2020, 2020
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Continental shelves are the most productive areas in the ocean and can have an important impact on the nutrient cycle as well as the climate system. The one in Yucatán is the largest shelf in the Gulf of Mexico. However, its nutrient budget remains unidentifiable. Here we propose not only a general nutrient budget for the Yucatán Shelf but also the physical processes responsible for its pathway modulation through a physical–biogeochemical coupled model of the whole Gulf of Mexico.
Ashley Dubnick, Martin Sharp, Brad Danielson, Alireza Saidi-Mehrabad, and Joel Barker
Biogeosciences, 17, 963–977, https://doi.org/10.5194/bg-17-963-2020, https://doi.org/10.5194/bg-17-963-2020, 2020
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We found that glaciers with basal temperatures near the melting point mobilize more solutes, nutrients, and microbes from the underlying substrate and are more likely to promote in situ biogeochemical activity than glaciers with basal temperatures well below the melting point. The temperature at the base of glaciers is therefore an important control on the biogeochemistry of ice near glacier beds, and, ultimately, the potential solutes, nutrients, and microbes exported from glaciated watersheds.
Audrey Delpech, Anna Conchon, Olivier Titaud, and Patrick Lehodey
Biogeosciences, 17, 833–850, https://doi.org/10.5194/bg-17-833-2020, https://doi.org/10.5194/bg-17-833-2020, 2020
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Micronekton is an important, yet poorly known, component of the trophic chain, which partly contributes to the storage of CO2 in the deep ocean thanks to biomass vertical migrations. In this study, we characterize the ideal sampling regions to estimate the amount of biomass that undergoes theses migrations. We find that observations made in warm, nondynamic and productive waters reduce the error of the estimation by 20 %. This result should likely serve for future in situ network deployment.
Filippos Tagklis, Takamitsu Ito, and Annalisa Bracco
Biogeosciences, 17, 231–244, https://doi.org/10.5194/bg-17-231-2020, https://doi.org/10.5194/bg-17-231-2020, 2020
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Deoxygenation of the oceans is potentially one of the most severe ecosystem stressors resulting from global warming given the high sensitivity of dissolved oxygen to ocean temperatures. Climate models suggest that despite the thermodynamic tendency of the oceans to lose oxygen, certain regions experience significant changes in the biologically driven O2 consumption, resulting in a resistance against deoxygenation. Overturning circulation changes are responsible for such a behavior.
Mohammad Abdul Halim, Han Y. H. Chen, and Sean C. Thomas
Biogeosciences, 16, 4357–4375, https://doi.org/10.5194/bg-16-4357-2019, https://doi.org/10.5194/bg-16-4357-2019, 2019
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Using field data collected over 4 years across a range of stand ages, we investigated how seasonal surface albedo in boreal forest varies with stand age, stand structure, and composition. Our results indicate that successional change in species composition is a key driver of age–related patterns in albedo, with hardwood species associated with higher albedo. The patterns described have important implications for both climate modeling and
climate–smartboreal forest management.
Paul A. Moore, Maxwell C. Lukenbach, Dan K. Thompson, Nick Kettridge, Gustaf Granath, and James M. Waddington
Biogeosciences, 16, 3491–3506, https://doi.org/10.5194/bg-16-3491-2019, https://doi.org/10.5194/bg-16-3491-2019, 2019
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Using very-high-resolution digital elevation models (DEMs), we assessed the basic structure and microtopographic variability of hummock–hollow plots at boreal and hemi-boreal sites primarily in North America. Using a simple model of peatland biogeochemical function, our results suggest that both surface heating and moss productivity may not be adequately resolved in models which only consider idealized hummock–hollow units.
Renee K. Gruber, Ryan J. Lowe, and James L. Falter
Biogeosciences, 16, 1921–1935, https://doi.org/10.5194/bg-16-1921-2019, https://doi.org/10.5194/bg-16-1921-2019, 2019
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Researchers from the University of Western Australia's Oceans Institute are studying large tides (up to 12 m range) that occur in the Kimberley region of Australia. These tides flush coral reefs with water rich in nutrients, which supports the growth of reef organisms. In this paper, we show how tidal cycles and seasons control nutrient availability on reefs. This study is among the first published accounts of reefs and water quality data in the remote and pristine Kimberley region.
Sergey A. Marakushev and Ol'ga V. Belonogova
Biogeosciences, 16, 1817–1828, https://doi.org/10.5194/bg-16-1817-2019, https://doi.org/10.5194/bg-16-1817-2019, 2019
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Among the existing theories of the autotrophic origin of life, CO2 is usually considered to be the carbon source for nascent autotrophic metabolism. However, ancestral carbon used in metabolism may have been derived from CH4 if the outflow of magma fluid to the surface of the Earth consisted mainly of methane. The hydrothermal system model is considered in the form of a phase diagram, which demonstrates the area of redox and P and T conditions favorable to development of primary methanotroph.
Venugopal Thushara, Puthenveettil Narayana Menon Vinayachandran, Adrian J. Matthews, Benjamin G. M. Webber, and Bastien Y. Queste
Biogeosciences, 16, 1447–1468, https://doi.org/10.5194/bg-16-1447-2019, https://doi.org/10.5194/bg-16-1447-2019, 2019
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Chlorophyll distribution in the ocean remains to be explored in detail, despite its climatic significance. Here, we document the vertical structure of chlorophyll in the Bay of Bengal using observations and a model. The shape of chlorophyll profiles, characterized by prominent deep chlorophyll maxima, varies in dynamically different regions, controlled by the monsoonal forcings. The present study provides new insights into the vertical distribution of chlorophyll, rarely observed by satellites.
Soeren Thomsen, Johannes Karstensen, Rainer Kiko, Gerd Krahmann, Marcus Dengler, and Anja Engel
Biogeosciences, 16, 979–998, https://doi.org/10.5194/bg-16-979-2019, https://doi.org/10.5194/bg-16-979-2019, 2019
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Physical and biogeochemical observations from an autonomous underwater vehicle in combination with ship-based measurements are used to investigate remote and local drivers of the oxygen and nutrient variability off Mauritania. Beside the transport of oxygen and nutrients characteristics from remote areas towards Mauritania also local remineralization of organic material close to the seabed seems to be important for the distribution of oxygen and nutrients.
Pascale Bouruet-Aubertot, Yannis Cuypers, Andrea Doglioli, Mathieu Caffin, Christophe Yohia, Alain de Verneil, Anne Petrenko, Dominique Lefèvre, Hervé Le Goff, Gilles Rougier, Marc Picheral, and Thierry Moutin
Biogeosciences, 15, 7485–7504, https://doi.org/10.5194/bg-15-7485-2018, https://doi.org/10.5194/bg-15-7485-2018, 2018
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The OUTPACE cruise took place between New Caledonia and French Polynesia. The main purpose was to understand how micro-organisms can survive in a very poor environment. One main source of nutrients is at depth, below the euphotic layer where micro-organisms live. The purpose of the turbulence measurements was to determine to which extent turbulence may
upliftnutrients into the euphotic layer. The origin of the turbulence that was found contrasted along the transect was also determined.
Daniel D. Richter, Sharon A. Billings, Peter M. Groffman, Eugene F. Kelly, Kathleen A. Lohse, William H. McDowell, Timothy S. White, Suzanne Anderson, Dennis D. Baldocchi, Steve Banwart, Susan Brantley, Jean J. Braun, Zachary S. Brecheisen, Charles W. Cook, Hilairy E. Hartnett, Sarah E. Hobbie, Jerome Gaillardet, Esteban Jobbagy, Hermann F. Jungkunst, Clare E. Kazanski, Jagdish Krishnaswamy, Daniel Markewitz, Katherine O'Neill, Clifford S. Riebe, Paul Schroeder, Christina Siebe, Whendee L. Silver, Aaron Thompson, Anne Verhoef, and Ganlin Zhang
Biogeosciences, 15, 4815–4832, https://doi.org/10.5194/bg-15-4815-2018, https://doi.org/10.5194/bg-15-4815-2018, 2018
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As knowledge in biology and geology explodes, science becomes increasingly specialized. Given the overlap of the environmental sciences, however, the explosion in knowledge inevitably creates opportunities for interconnecting the biogeosciences. Here, 30 scientists emphasize the opportunities for biogeoscience collaborations across the world’s remarkable long-term environmental research networks that can advance science and engage larger scientific and public audiences.
Ivy Frenger, Matthias Münnich, and Nicolas Gruber
Biogeosciences, 15, 4781–4798, https://doi.org/10.5194/bg-15-4781-2018, https://doi.org/10.5194/bg-15-4781-2018, 2018
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Although mesoscale ocean eddies are ubiquitous in the Southern Ocean (SO), their regional and seasonal association with phytoplankton has not been quantified. We identify over 100 000 eddies and determine the associated phytoplankton biomass anomalies using satellite-based chlorophyll (Chl) as a proxy. The emerging Chl anomalies can be explained largely by lateral advection of Chl by eddies. This impact of eddies on phytoplankton may implicate downstream effects on SO biogeochemical properties.
Yi Sun, Xiong Z. He, Fujiang Hou, Zhaofeng Wang, and Shenghua Chang
Biogeosciences, 15, 4233–4243, https://doi.org/10.5194/bg-15-4233-2018, https://doi.org/10.5194/bg-15-4233-2018, 2018
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To investigate how grazing alters litter composition, quality and decomposition, we collected litter from grazing (GP) and grazing exclusion paddocks (GEP) and incubated them in situ and across sites. Grazing increased litter N and grazing exclusion increased litter mass of palatable species and promoted SOC. Litter decomposed faster in GP and N was opposite. Site environment had more impact on litter decomposition. Results may be helpful in developing strategies to restore degraded grasslands.
Louise Rousselet, Alain de Verneil, Andrea M. Doglioli, Anne A. Petrenko, Solange Duhamel, Christophe Maes, and Bruno Blanke
Biogeosciences, 15, 2411–2431, https://doi.org/10.5194/bg-15-2411-2018, https://doi.org/10.5194/bg-15-2411-2018, 2018
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The patterns of the large- and fine-scale surface circulation on biogeochemical and biological distributions are examined in the western tropical South Pacific (WTSP) in the context of the OUTPACE oceanographic cruise. The combined use of in situ and satellite data allows for the identification of water mass transport pathways and fine-scale structures, such as fronts, that drive surface distribution of tracers and microbial community structures.
Cited articles
Ballantyne, F., Schofield, O. M., and Levin, S.: The emergence of regularity and variability in marine ecosystems: the combined role of physics, chemistry and biology, Sci. Mar., 75, 719–731, https://doi.org/10.3989/scimar.2011.75n4719, 2011.
Biswas, A. and Si, B. C.: Model Averaging for Semivariogram Model Parameters, Advances in Agrophysical Research, 4, 81–96. https://doi.org/10.5772/52339, 2013.
Cetina-Heredia, P., Roughan, M., van Sebille, E., and Coleman, M. A.: Long-term trends in the east australian current separation latitude and eddy driven transport. J. Geophys. Res.-Oceans, 119, 4351–4366, https://doi.org/10.1002/2014JC010071, 2014.
Claustre, H.: Bio-optical sensors on argo floats. reports of the international ocean-colour coordinating group, no. 11, ioccg. Tech. rep., IOCCG, Dartmouth, Canada, 2011.
Cressie, N. and Hawkins, D.: Robust Estimation Of The Variogram, J. Int. Ass. Math. Geol., 12, 115–125, https://doi.org/10.1007/BF01035243, 1980.
Denman, K., Okubo, A., and Platt, T.: The chlorophyll fluctuation spectrum in the sea. Limnol. Oceanogr., 22, 1033–1038, https://doi.org/10.4319/lo.1977.22.6.1033, 1977.
Doney, S. C., Glover, D. M., McCue, S. J., and Fuentes, M.: Mesoscale variability of sea-viewing wide field-of-view sensor (seawifs) satellite ocean color: Global patterns and spatial scales, J. Geophys. Res.-Oceans, 108, 3024, https://doi.org/10.1029/2001JC000843, 2003.
Everett, J. D., Baird, M. E., Oke, P. R., and Suthers, I. M.: An avenue of eddies: Quantifying the biophysical properties of mesoscale eddies in the Tasman Sea, Geophys. Res. Lett., 39, L16608, https://doi.org/10.1029/2012GL053091, 2012.
Goebel, N. L., Frolov, S., and Edwards, C. A.: Complementary use of wave glider and satellite measurements: Description of spatial decorrelation scales in chl a fluorescence across the pacific basin, Methods in Oceanography, 10, 90–103, https://doi.org/10.1016/j.mio.2014.07.001, 2014.
Hassler, C., Djajadikarta, J., Doblin, M., Everett, J., and Thompson, P.: Characterisation of water masses and phytoplankton nutrient limitation in the east australian current separation zone during spring 2008, Deep Sea Res. Pt. II, 58, 664–677, https://doi.org/10.1016/j.dsr2.2010.06.008, 2011.
Jones, E. M., Oke, P. R., Rizwi, F., and Murray, L. M.: Assimilation of glider and mooring data into a coastal ocean model, Ocean Model., 47, 1–13, https://doi.org/10.1016/j.ocemod.2011.12.009, 2012.
Jones, E. M., Doblin, M. A., Matear, R., and King, E.: Assessing and evaluating the ocean-colour footprint of a regional observing system, J. Marine Syst., 143, 49–61, https://doi.org/10.1016/j.jmarsys.2014.10.012, 2015.
Journel, A. G. and Huijbregts, C. J.: Mining geostatistics, Academic Press London, UK and New York, USA, 600 pp., 1978.
Legaard, K. R. and Thomas, A. C.: Spatial patterns of intraseasonal variability of chlorophyll and sea surface temperature in the california current, J. Geophys. Res.-Oceans, 112, C09006, https://doi.org/10.1029/2007JC004097, 2007.
Mahadevan, A. and Campbell, J. W.: Biogeochemical patchiness at the sea surface, Geophys. Res. Lett., 29, 32-1–32-4, https://doi.org/10.1029/2001GL014116, 2002.
Martin, A.: Phytoplankton patchiness: the role of lateral stirring and mixing, Prog. Oceanogr., 57, 125–174,
doi10.1016/S0079-6611(03)00085-5, 2003.
doi10.1016/S0079-6611(03)00085-5, 2003.
Moore, A. M., Arango, H. G., Broquet, G., Edwards, C., Veneziani, M., Powell, B., Foley, D., Doyle, J. D., Costa, D., and Robinson, P.: The Regional Ocean Modeling System (ROMS) 4-dimensional variational data assimilation systems: Part II – Performance and application to the California Current System, Prog. Oceanogr., 91, 50–73, https://doi.org/10.1016/j.pocean.2011.05.003. 2011
Oke, P. and. Sakov, P: Assessing the footprint of a regional ocean observing system, J. Marine Syst., 105–108, 30–51, https://doi.org/10.1016/j.jmarsys.2012.05.009, 2012.
Oke, P. R. and Sakov, P.: Representation Error of Oceanic Observations for Data Assimilation, J. Atmos. Ocean. Techn., 25, 1004, https://doi.org/10.1175/2007JTECHO558.1, 2008.
Oke, P. R., Brassington, G. B., Griffin, D. A., and Schiller, A.: The bluelink ocean data assimilation system (bodas), Ocean Model., 21, 46–70, https://doi.org/10.1016/j.ocemod.2007.11.002, 2008.
Pan, C., Yaremchuk, M., Nechaev, D., and Ngodock, H.: Variational assimilation of glider data in Monterey Bay, J. Marine Res., 69, 331–346, https://doi.org/10.1357/002224011798765259, 2011.
Pan, C., Zheng, L., Weisberg, R. H., Liu, Y., and Lembke, C. E.: Comparisons of different ensemble schemes for glider data assimilation on west florida shelf, Ocean Model., 81, 13–24, https://doi.org/10.1016/j.ocemod.2014.06.005, 2014.
Parslow, J., Cressie, N., Campbell, E. P., Jones, E., and Murray, L.: Bayesian learning and predictability in a stochastic nonlinear dynamical model, Ecol. Appl., 23, 679–698, 2013.
Ridgeway, K. and Godfrey, J.: Mass and heat budgets in the east australian current: a direct approach, J. Geophys. Res., 99, 3231–3248, 1994.
Roughan, M., Schaeffer, A., and Kioroglou, S.: Assessing the design of the nsw-imos moored observation array from 2008–2013: Recommendations for the future, Oceans – San Diego, CA, USA, 23–27 September 2013 , 1–7, 2013.
Sakov, P. and Bertino, L.: Relation between two common localisation methods for the EnKF, Computat. Geosci., 15, 225–237, https://doi.org/10.1007/s10596-010-9202-6, 2011.
Schaeffer, A. and Roughan, M.: Influence of a western boundary current on shelf dynamics and upwelling from repeat glider deployments, Geophys. Res. Lett., 42, 121–128, https://doi.org/10.1002/2014GL062260, 2015.
Schaeffer, A., Roughan, M., and Morris, B.: Cross-shelf dynamics in a western boundary current. implications for upwelling, J. Phys. Oceanogr., 43, 1042–1059, https://doi.org/10.1175/JPO-D-12-0177.1, 2013.
Schaeffer, A., Roughan, M., and Morris, B.: Corrigendum cross-shelf dynamics in a western boundary current. implications for upwelling, J. Phys. Oceanogr., 44, 2812–2813, https://doi.org/10.1175/JPO-D-14-0091.1, 2014a.
Schaeffer, A., Roughan, M., and Wood, J. E.: Observed bottom boundary layer transport and uplift on the continental shelf adjacent to a western boundary current, J. Geophys. Res.-Oceans, 119, 4922–4939, https://doi.org/10.1002/2013JC009735, 2014b.
Tandeo, P., Autret, E., Chapron, B., Fablet, R., and Garello, R.: SST spatial anisotropic covariances from metop-avhrr data, Remote Sens. Environ., 141, 144–148, https://doi.org/10.1016/j.rse.2013.10.024, 2014.
Todd, R. E., Gawarkiewicz, G. G., and Owens, W. B.: Horizontal scales of variability over the middle atlantic bight shelf break and continental rise from finescale observations, J. Phys. Oceanogr., 43, 222–230, https://doi.org/10.1175/JPO-D-12-099.1, 2013.
Tortell, P., Gueguen, C., Long, M., Payne, C., Lee, P., and DiTullio, G.: Spatial variability and temporal dynamics of surface water pCO2, O2/Ar and dimethylsulfide in the Ross Sea, Antarctica, Deep Sea Res. Pt. I,, 58, 241–259, https://doi.org/10.1016/j.dsr.2010.12.006, 2011.
Wong, A., Keeley, R., and Carval, T.: Argo quality control manual. Tech. rep., Argo Data Management Team, available at: https://doi.org/10.13155/33951, 2014.
Yoder, J. A., McClain, C. R., Blanton, J. O., and Oeymay, L.-Y.: Spatial scales in czcs-chlorophyll imagery of the southeastern u.s. continental shelf. Limnol. Oceanogr., 32, 929–941, https://doi.org/10.4319/lo.1987.32.4.0929, 1987.
Short summary
The water properties of the coastal ocean such as temperature, salt, oxygen, or chlorophyll content vary spatially, and estimates need to be made regarding the scales of variability. Here, we use statistical techniques to determine the spatial variability of ocean properties from high-resolution measurements by gliders. We show that biological activity is patchy compared to the distribution of physical characteristics, and that the size and shape of this is determined by coastal ocean processes.
The water properties of the coastal ocean such as temperature, salt, oxygen, or chlorophyll...
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