Articles | Volume 13, issue 15
https://doi.org/10.5194/bg-13-4389-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-13-4389-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
08 Aug 2016
Research article |
| 08 Aug 2016
Seasonal variability of the oxygen minimum zone off Peru in a high-resolution regional coupled model
Oscar Vergara
CORRESPONDING AUTHOR
Laboratoire d'Études en Géophysique et Océanographie
Spatiales, CNRS/IRD/CNES/UPS, UMR5566, Toulouse, France
Boris Dewitte
Laboratoire d'Études en Géophysique et Océanographie
Spatiales, CNRS/IRD/CNES/UPS, UMR5566, Toulouse, France
Departamento de Biología, Facultad de Ciencias del Mar,
Universidad Católica del Norte, Coquimbo, Chile
Millennium Nucleus for Ecology and Sustainable Management of Oceanic
Islands (ESMOI), Coquimbo, Chile
Centro de Estudios Avanzado en Zonas Áridas (CEAZA), Coquimbo,
Chile
Ivonne Montes
Instituto Geofísico del Perú (IGP), Lima, Perú
Veronique Garçon
Laboratoire d'Études en Géophysique et Océanographie
Spatiales, CNRS/IRD/CNES/UPS, UMR5566, Toulouse, France
Marcel Ramos
Departamento de Biología, Facultad de Ciencias del Mar,
Universidad Católica del Norte, Coquimbo, Chile
Millennium Nucleus for Ecology and Sustainable Management of Oceanic
Islands (ESMOI), Coquimbo, Chile
Centro de Estudios Avanzado en Zonas Áridas (CEAZA), Coquimbo,
Chile
Aurélien Paulmier
Laboratoire d'Études en Géophysique et Océanographie
Spatiales, CNRS/IRD/CNES/UPS, UMR5566, Toulouse, France
Oscar Pizarro
Department of Geophysics, University of Concepción, Concepción, Chile
Millennium Institute of Oceanography, University of Concepción, Concepción, Chile
Related authors
Elisa Carli, Rosemary Morrow, Oscar Vergara, Robin Chevrier, and Lionel Renault
Ocean Sci., 19, 1413–1435, https://doi.org/10.5194/os-19-1413-2023, https://doi.org/10.5194/os-19-1413-2023, 2023
Short summary
Short summary
Oceanic eddies are the structures carrying most of the energy in our oceans. They are key to climate regulation and nutrient transport. We prepare for the Surface Water and Ocean Topography mission, studying eddy dynamics in the region south of Africa, where the Indian and Atlantic oceans meet, using models and simulated satellite data. SWOT will provide insights into the structures smaller than what is currently observable, which appear to greatly contribute to eddy kinetic energy and strain.
Oscar Vergara, Rosemary Morrow, Marie-Isabelle Pujol, Gérald Dibarboure, and Clément Ubelmann
Ocean Sci., 19, 363–379, https://doi.org/10.5194/os-19-363-2023, https://doi.org/10.5194/os-19-363-2023, 2023
Short summary
Short summary
Recent advances allow us to observe the ocean from space with increasingly higher detail, challenging our knowledge of the ocean's surface height signature. We use a statistical approach to determine the spatial scale at which the sea surface height signal is no longer dominated by geostrophic turbulence but in turn becomes dominated by wave-type motions. This information helps us to better use the data provided by ocean-observing satellites and to gain knowledge on climate-driving processes.
Marie-Isabelle Pujol, Stéphanie Dupuy, Oscar Vergara, Antonio Sánchez-Román, Yannice Faugère, Pierre Prandi, Mei-Ling Dabat, Quentin Dagneaux, Marine Lievin, Emeline Cadier, Gérald Dibarboure, and Nicolas Picot
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2022-292, https://doi.org/10.5194/essd-2022-292, 2022
Manuscript not accepted for further review
Short summary
Short summary
An altimeter sea level along-track level-3 product with a 5 Hz (~1.2 km) sampling is proposed. It takes advantage of recent advances in radar altimeter processing, and improvements made to different stages of the processing chain. Compared to the conventional 1 Hz (~7 km) product, it significantly improves the observability of the short wavelength signal in open ocean and near coast areas (> 5 km). It also contributes to improving high resolution numerical model outputs via data assimilation.
Marine Bretagnon, Aurélien Paulmier, Véronique Garçon, Boris Dewitte, Séréna Illig, Nathalie Leblond, Laurent Coppola, Fernando Campos, Federico Velazco, Christos Panagiotopoulos, Andreas Oschlies, J. Martin Hernandez-Ayon, Helmut Maske, Oscar Vergara, Ivonne Montes, Philippe Martinez, Edgardo Carrasco, Jacques Grelet, Olivier Desprez-De-Gesincourt, Christophe Maes, and Lionel Scouarnec
Biogeosciences, 15, 5093–5111, https://doi.org/10.5194/bg-15-5093-2018, https://doi.org/10.5194/bg-15-5093-2018, 2018
Short summary
Short summary
In oxygen minimum zone, the fate of the organic matter is a key question as the low oxygen condition would preserve the OM and thus enhance the biological carbon pump while the high microbial activity would foster the remineralisation and the greenhouse gases emission. To investigate this paradigm, sediment traps were deployed off Peru. We pointed out the influence of the oxygenation as well as the organic matter quantity and quality on the carbon transfer efficiency in the oxygen minimum zone.
Mauro Cirano, Enrique Alvarez-Fanjul, Arthur Capet, Stefania Ciliberti, Emanuela Clementi, Boris Dewitte, Matias Dinápoli, Ghada El Serafy, Patrick Hogan, Sudheer Joseph, Yasumasa Miyazawa, Ivonne Montes, Diego A. Narvaez, Heather Regan, Claudia G. Simionato, Gregory C. Smith, Joanna Staneva, Clemente A. S. Tanajura, Pramod Thupaki, Claudia Urbano-Latorre, Jennifer Veitch, and Jorge Zavala Hidalgo
State Planet, 5-opsr, 5, https://doi.org/10.5194/sp-5-opsr-5-2025, https://doi.org/10.5194/sp-5-opsr-5-2025, 2025
Short summary
Short summary
Operational ocean forecasting systems (OOFSs) are crucial for human activities, environmental monitoring, and policymaking. An assessment across eight key regions highlights strengths and gaps, particularly in coastal and biogeochemical forecasting. AI offers improvements, but collaboration, knowledge sharing, and initiatives like the OceanPrediction Decade Collaborative Centre (DCC) are key to enhancing accuracy, accessibility, and global forecasting capabilities.
Manuel Torres-Godoy, Oscar Pizarro, Boris Dewitte, and Vera Oerder
EGUsphere, https://doi.org/10.5194/egusphere-2025-1311, https://doi.org/10.5194/egusphere-2025-1311, 2025
Short summary
Short summary
The Southeast Pacific plays a key role in transporting deep ocean water toward the Southern Ocean through a deep southward flow along the Chilean coast. This study explores its variations and links to El Niño–Southern Oscillation. We found that the deep flow strengthens during El Niño and weakens during La Niña. These changes are tied to large-scale ocean shifts and energy transfers from surface to deep waters. Smaller-scale ocean processes also influence the flow, especially near the coast.
Macarena Díaz-Astudillo, Manuel Castillo, Pedro A. Figueroa, Leonardo R. Castro, Ramiro Riquelme-Bugueño, Iván Pérez-Santos, Oscar Pizarro, and Gonzalo S. Saldías
EGUsphere, https://doi.org/10.5194/egusphere-2025-417, https://doi.org/10.5194/egusphere-2025-417, 2025
Short summary
Short summary
Submarine canyons are known hotspots of marine productivity and biodiversity, but we don’t fully understand why. We studied a submarine canyon located in central Chile and found that it’s a highly dynamic environment in both space and time. We think that the alternating currents and the contrasting distribution of zooplankton within the canyon might interact to promote zooplankton retention. Our results help to explain why submarine canyons host such high zooplankton diversity and abundance.
Lenna Oriana Ortiz-Castillo, Oscar Pizarro, Marcela Cornejo-D'Ottone, and Boris Dewitte
EGUsphere, https://doi.org/10.5194/egusphere-2024-1290, https://doi.org/10.5194/egusphere-2024-1290, 2024
Short summary
Short summary
Poleward undercurrent eddies (Puddies) transport a source water mass with low oxygen hundreds of kilometers away from the coast. A simulation based on a physical-biogeochemical model was used to characterize the biogeochemical average conditions inside the Puddies during their lifetime while modifying the conditions in the open sea. Our findings show that the biological activity extends the low oxygen core conditions counteracted by advection processes that tend to ventilate the core.
Elisa Carli, Rosemary Morrow, Oscar Vergara, Robin Chevrier, and Lionel Renault
Ocean Sci., 19, 1413–1435, https://doi.org/10.5194/os-19-1413-2023, https://doi.org/10.5194/os-19-1413-2023, 2023
Short summary
Short summary
Oceanic eddies are the structures carrying most of the energy in our oceans. They are key to climate regulation and nutrient transport. We prepare for the Surface Water and Ocean Topography mission, studying eddy dynamics in the region south of Africa, where the Indian and Atlantic oceans meet, using models and simulated satellite data. SWOT will provide insights into the structures smaller than what is currently observable, which appear to greatly contribute to eddy kinetic energy and strain.
Oscar Vergara, Rosemary Morrow, Marie-Isabelle Pujol, Gérald Dibarboure, and Clément Ubelmann
Ocean Sci., 19, 363–379, https://doi.org/10.5194/os-19-363-2023, https://doi.org/10.5194/os-19-363-2023, 2023
Short summary
Short summary
Recent advances allow us to observe the ocean from space with increasingly higher detail, challenging our knowledge of the ocean's surface height signature. We use a statistical approach to determine the spatial scale at which the sea surface height signal is no longer dominated by geostrophic turbulence but in turn becomes dominated by wave-type motions. This information helps us to better use the data provided by ocean-observing satellites and to gain knowledge on climate-driving processes.
Marie-Isabelle Pujol, Stéphanie Dupuy, Oscar Vergara, Antonio Sánchez-Román, Yannice Faugère, Pierre Prandi, Mei-Ling Dabat, Quentin Dagneaux, Marine Lievin, Emeline Cadier, Gérald Dibarboure, and Nicolas Picot
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2022-292, https://doi.org/10.5194/essd-2022-292, 2022
Manuscript not accepted for further review
Short summary
Short summary
An altimeter sea level along-track level-3 product with a 5 Hz (~1.2 km) sampling is proposed. It takes advantage of recent advances in radar altimeter processing, and improvements made to different stages of the processing chain. Compared to the conventional 1 Hz (~7 km) product, it significantly improves the observability of the short wavelength signal in open ocean and near coast areas (> 5 km). It also contributes to improving high resolution numerical model outputs via data assimilation.
João H. Bettencourt, Vincent Rossi, Lionel Renault, Peter Haynes, Yves Morel, and Véronique Garçon
Nonlin. Processes Geophys., 27, 277–294, https://doi.org/10.5194/npg-27-277-2020, https://doi.org/10.5194/npg-27-277-2020, 2020
Short summary
Short summary
The oceans are losing oxygen, and future changes may worsen this problem. We performed computer simulations of an idealized Iberian Peninsula upwelling system to identify the main fine-scale processes driving dissolved oxygen variability as well as study the response of oxygen levels to changes in wind patterns and phytoplankton species. Our results suggest that oxygen levels would decrease if the wind blows for long periods of time or if phytoplankton is dominated by species that grow slowly.
Marine Bretagnon, Aurélien Paulmier, Véronique Garçon, Boris Dewitte, Séréna Illig, Nathalie Leblond, Laurent Coppola, Fernando Campos, Federico Velazco, Christos Panagiotopoulos, Andreas Oschlies, J. Martin Hernandez-Ayon, Helmut Maske, Oscar Vergara, Ivonne Montes, Philippe Martinez, Edgardo Carrasco, Jacques Grelet, Olivier Desprez-De-Gesincourt, Christophe Maes, and Lionel Scouarnec
Biogeosciences, 15, 5093–5111, https://doi.org/10.5194/bg-15-5093-2018, https://doi.org/10.5194/bg-15-5093-2018, 2018
Short summary
Short summary
In oxygen minimum zone, the fate of the organic matter is a key question as the low oxygen condition would preserve the OM and thus enhance the biological carbon pump while the high microbial activity would foster the remineralisation and the greenhouse gases emission. To investigate this paradigm, sediment traps were deployed off Peru. We pointed out the influence of the oxygenation as well as the organic matter quantity and quality on the carbon transfer efficiency in the oxygen minimum zone.
Mélanie Giraud, Véronique Garçon, Denis De La Broise, Stéphane L'Helguen, Joël Sudre, and Marie Boye
Biogeosciences Discuss., https://doi.org/10.5194/bg-2018-306, https://doi.org/10.5194/bg-2018-306, 2018
Manuscript not accepted for further review
Short summary
Short summary
Associated to transitional
blueenergies, first investigation of the environmental impact on the marine microorganisms of an Ocean Thermal Energy Conversion (OTEC) pilot plant before its installation, using numerical simulation and in situ experimentations. No environmental standards are available yet. Microbiodiversity can be impacted in one scenario of the OTEC functioning. Give the basis for anticipating the long-term effects of renewable marine thermal energies on the environment.
Tatiana Matveeva, Daria Gushchina, and Boris Dewitte
Geosci. Model Dev., 11, 2373–2392, https://doi.org/10.5194/gmd-11-2373-2018, https://doi.org/10.5194/gmd-11-2373-2018, 2018
Short summary
Short summary
Predicting El Niño both in current condition and for the next century is a key societal need. Intraseasonal atmosphere variability (ITV) plays an important role in triggering of El Niño; the El Niño/ITV relationship may change in future climate. The purpose of this study is to select the models that are most skilful in simulation of the ITV/El Niño relationship and thus promising for investigation of the El Niño mechanism under global climate change. Five models of CMIP5 project were selected.
Michelle I. Graco, Sara Purca, Boris Dewitte, Carmen G. Castro, Octavio Morón, Jesús Ledesma, Georgina Flores, and Dimitri Gutiérrez
Biogeosciences, 14, 4601–4617, https://doi.org/10.5194/bg-14-4601-2017, https://doi.org/10.5194/bg-14-4601-2017, 2017
Short summary
Short summary
The Peruvian coastal upwelling ecosystem is a natural laboratory to study climatic variability and climate change. We examined the variability in the OMZ in the last decades in connection with the equatorial Pacific strong 1997–1998 El Niño event and the influence of central Pacific El Niño events and enhanced equatorial Kelvin wave activity since 2000. The data reveal two contrasting regimes and a long-term trend corresponding to a deepening of the oxygen-deficient waters and warming.
Manuel I. Castillo, Oscar Pizarro, Nadin Ramírez, and Mario Cáceres
Ocean Sci., 13, 145–160, https://doi.org/10.5194/os-13-145-2017, https://doi.org/10.5194/os-13-145-2017, 2017
Short summary
Short summary
Here we present the results of an intensive physical oceanography study conducted in the Reloncavi fjord (41.5º S, 72.5º W) which was focused on the sub-inertial timescale. The along-fjord currents presented 3-day oscillations which were consistent with the natural internal period of oscillation of the fjord basin (internal seiche). This oscillation could explain more than 44 % of the 3-day variability and contributed with kinetic energy levels as large as the tidal currents.
Luis Bravo, Marcel Ramos, Orlando Astudillo, Boris Dewitte, and Katerina Goubanova
Ocean Sci., 12, 1049–1065, https://doi.org/10.5194/os-12-1049-2016, https://doi.org/10.5194/os-12-1049-2016, 2016
Short summary
Short summary
We evaluated the seasonal variability in Ekman transport, pumping and their relative contribution to total upwelling along the central-northern Chile region (~30ºS) from a high-resolution atmospheric model simulation. The results showed that the relative contribution of Ekman transport and pumping to the vertical transport along the coast, considering the estimated wind drop-off length, indicated meridional alternation between both mechanisms, modulated by orography and the intricate coastline.
Marcela Cornejo D'Ottone, Luis Bravo, Marcel Ramos, Oscar Pizarro, Johannes Karstensen, Mauricio Gallegos, Marco Correa-Ramirez, Nelson Silva, Laura Farias, and Lee Karp-Boss
Biogeosciences, 13, 2971–2979, https://doi.org/10.5194/bg-13-2971-2016, https://doi.org/10.5194/bg-13-2971-2016, 2016
Manuel I. Castillo, Ursula Cifuentes, Oscar Pizarro, Leif Djurfeldt, and Mario Caceres
Ocean Sci., 12, 533–544, https://doi.org/10.5194/os-12-533-2016, https://doi.org/10.5194/os-12-533-2016, 2016
Short summary
Short summary
The upper layer of the Reloncaví fjord, Chile, shows a continuous stratification year-round. Nevertheless, the vertical salt flux seems to be balanced by the horizontal salt flux, which maintains the amount of salt into the fjord nearly as a steady state. The upper layer shows a flushing time of about 3 days.
I. Hernández-Carrasco, J. Sudre, V. Garçon, H. Yahia, C. Garbe, A. Paulmier, B. Dewitte, S. Illig, I. Dadou, M. González-Dávila, and J. M. Santana-Casiano
Biogeosciences, 12, 5229–5245, https://doi.org/10.5194/bg-12-5229-2015, https://doi.org/10.5194/bg-12-5229-2015, 2015
Short summary
Short summary
We have reconstructed maps of air-sea CO2 fluxes at high resolution (4 km) in the offshore Benguela region using sea surface temperature and ocean colour data and CarbonTracker CO2 fluxes data at low resolution (110 km).
The inferred representation of pCO2 improves the description provided by CarbonTracker, enhancing small-scale variability.
We find that the resolution, as well as the inferred pCO2 data itself, is closer to in situ measurements of pCO2.
Related subject area
Biogeochemistry: Modelling, Aquatic
Acidification, warming, and nutrient management are projected to cause reductions in shell and tissue weights of oysters in a coastal plain estuary
Modeling the contribution of micronekton diel vertical migrations to carbon export in the mesopelagic zone
Mixing, spatial resolution and argon saturation in a suite of coupled general ocean circulation biogeochemical models off Mauritania
Efficiency metrics for ocean alkalinity enhancements under responsive and prescribed atmospheric pCO2 conditions
Changes in Arctic Ocean plankton community structure and trophic dynamics on seasonal to interannual timescales
Global impact of benthic denitrification on marine N2 fixation and primary production simulated by a variable-stoichiometry Earth system model
Killing the predator: impacts of highest-predator mortality on the global-ocean ecosystem structure
Hydrodynamic and biochemical impacts on the development of hypoxia in the Louisiana–Texas shelf – Part 1: roles of nutrient limitation and plankton community
Validation of the coupled physical–biogeochemical ocean model NEMO–SCOBI for the North Sea–Baltic Sea system
Investigating ecosystem connections in the shelf sea environment using complex networks
Seasonal and interannual variability of the pelagic ecosystem and of the organic carbon budget in the Rhodes Gyre (eastern Mediterranean): influence of winter mixing
How much do bacterial growth properties and biodegradable dissolved organic matter control water quality at low flow?
Methane emissions from Arctic landscapes during 2000–2015: an analysis with land and lake biogeochemistry models
Including filter-feeding gelatinous macrozooplankton in a global marine biogeochemical model: model–data comparison and impact on the ocean carbon cycle
Riverine impact on future projections of marine primary production and carbon uptake
Subsurface oxygen maximum in oligotrophic marine ecosystems: mapping the interaction between physical and biogeochemical processes
Quantifying biological carbon pump pathways with a data-constrained mechanistic model ensemble approach
Assessing the spatial and temporal variability of methylmercury biogeochemistry and bioaccumulation in the Mediterranean Sea with a coupled 3D model
Hydrodynamic and biochemical impacts on the development of hypoxia in the Louisiana–Texas shelf – Part 2: statistical modeling and hypoxia prediction
Modelling the effects of benthic fauna on carbon, nitrogen and phosphorus dynamics in the Baltic Sea
Improved prediction of dimethyl sulfide (DMS) distributions in the northeast subarctic Pacific using machine-learning algorithms
Nutrient transport and transformation in macrotidal estuaries of the French Atlantic coast: a modeling approach using the Carbon-Generic Estuarine Model
A modelling study of temporal and spatial pCO2 variability on the biologically active and temperature-dominated Scotian Shelf
Modeling the marine chromium cycle: new constraints on global-scale processes
New insights into large-scale trends of apparent organic matter reactivity in marine sediments and patterns of benthic carbon transformation
Evaluation of ocean dimethylsulfide concentration and emission in CMIP6 models
Zooplankton mortality effects on the plankton community of the northern Humboldt Current System: sensitivity of a regional biogeochemical model
Multi-compartment kinetic–allometric (MCKA) model of radionuclide bioaccumulation in marine fish
Impact of bottom trawling on sediment biogeochemistry: a modelling approach
Cyanobacteria blooms in the Baltic Sea: a review of models and facts
Arctic Ocean acidification over the 21st century co-driven by anthropogenic carbon increases and freshening in the CMIP6 model ensemble
Modeling silicate–nitrate–ammonium co-limitation of algal growth and the importance of bacterial remineralization based on an experimental Arctic coastal spring bloom culture study
Role of jellyfish in the plankton ecosystem revealed using a global ocean biogeochemical model
Extreme event waves in marine ecosystems: an application to Mediterranean Sea surface chlorophyll
Use of optical absorption indices to assess seasonal variability of dissolved organic matter in Amazon floodplain lakes
The role of sediment-induced light attenuation on primary production during Hurricane Gustav (2008)
Quantifying spatiotemporal variability in zooplankton dynamics in the Gulf of Mexico with a physical–biogeochemical model
One size fits all? Calibrating an ocean biogeochemistry model for different circulations
Assessing the temporal scale of deep-sea mining impacts on sediment biogeochemistry
Seasonal patterns of surface inorganic carbon system variables in the Gulf of Mexico inferred from a regional high-resolution ocean biogeochemical model
Oxygen dynamics and evaluation of the single-station diel oxygen model across contrasting geologies
Oceanic CO2 outgassing and biological production hotspots induced by pre-industrial river loads of nutrients and carbon in a global modeling approach
Global trends in marine nitrate N isotopes from observations and a neural network-based climatology
Merging bio-optical data from Biogeochemical-Argo floats and models in marine biogeochemistry
Model constraints on the anthropogenic carbon budget of the Arctic Ocean
Modeling oceanic nitrate and nitrite concentrations and isotopes using a 3-D inverse N cycle model
Biogeochemical response of the Mediterranean Sea to the transient SRES-A2 climate change scenario
Modelling the biogeochemical effects of heterotrophic and autotrophic N2 fixation in the Gulf of Aqaba (Israel), Red Sea
A perturbed biogeochemistry model ensemble evaluated against in situ and satellite observations
Diazotrophy as the main driver of the oligotrophy gradient in the western tropical South Pacific Ocean: results from a one-dimensional biogeochemical–physical coupled model
Catherine R. Czajka, Marjorie A. M. Friedrichs, Emily B. Rivest, Pierre St-Laurent, Mark J. Brush, and Fei Da
Biogeosciences, 22, 3181–3206, https://doi.org/10.5194/bg-22-3181-2025, https://doi.org/10.5194/bg-22-3181-2025, 2025
Short summary
Short summary
Under future acidification, warming, and nutrient management, substantial reductions in shell and tissue weights of Eastern oysters are projected for the Chesapeake Bay. Lower oyster growth rates will be largely driven by reduced calcium carbonate saturation states and reduced food availability. Oyster aquaculture practices in the region will likely be affected, with site selection becoming increasingly important as impacts will be highly spatially variable.
Hélène Thibault, Frédéric Ménard, Jeanne Abitbol-Spangaro, Jean-Christophe Poggiale, and Séverine Martini
Biogeosciences, 22, 2181–2200, https://doi.org/10.5194/bg-22-2181-2025, https://doi.org/10.5194/bg-22-2181-2025, 2025
Short summary
Short summary
Micronekton significantly impact oceanic carbon transport yet are often overlooked. Using a trait-based model, we simulated their diel vertical migrations and carbon production, revealing size, taxonomy, light, and primary production as key factors. In temperate regions, micronekton greatly influenced the transport efficiency in summer. Future research must focus on micronekton metabolism and dynamics, considering global warming and their potential exploitation.
Heiner Dietze and Ulrike Löptien
Biogeosciences, 22, 1215–1236, https://doi.org/10.5194/bg-22-1215-2025, https://doi.org/10.5194/bg-22-1215-2025, 2025
Short summary
Short summary
We introduce argon saturation as a prognostic variable in a suite of coupled general ocean circulation biogeochemical models off Mauritania. Our results indicate that the effect of increasing the spatial horizontal model resolutions from 12 km to 1.5 km leads to changes comparable to other infamous spurious effects of state-of-the-art numerical advection numerics.
Michael D. Tyka
Biogeosciences, 22, 341–353, https://doi.org/10.5194/bg-22-341-2025, https://doi.org/10.5194/bg-22-341-2025, 2025
Short summary
Short summary
Marine CO2 removal (mCDR) is a promising technology for removing legacy emissions from the atmosphere. Its indirect nature makes it difficult to assess experimentally; instead one relies heavily on simulation. Many past papers have treated the atmosphere as non-responsive to the intervention studied. We show that even under these simplified assumptions, the increase in ocean CO2 inventory is equal to the equivalent quantity of direct CO2 removals occurring over time, in a realistic atmosphere.
Gabriela Negrete-García, Jessica Y. Luo, Colleen M. Petrik, Manfredi Manizza, and Andrew D. Barton
Biogeosciences, 21, 4951–4973, https://doi.org/10.5194/bg-21-4951-2024, https://doi.org/10.5194/bg-21-4951-2024, 2024
Short summary
Short summary
The Arctic Ocean experiences significant seasonal and year-to-year changes, impacting marine plankton populations. Using a plankton community model, we studied these effects on plankton communities and their influence on fish production. Our findings revealed earlier plankton blooms, shifts towards more carnivorous zooplankton, and increased fishery potential during summertime, especially in warmer years with less ice, highlighting the delicate balance of Arctic ecosystems.
Na Li, Christopher J. Somes, Angela Landolfi, Chia-Te Chien, Markus Pahlow, and Andreas Oschlies
Biogeosciences, 21, 4361–4380, https://doi.org/10.5194/bg-21-4361-2024, https://doi.org/10.5194/bg-21-4361-2024, 2024
Short summary
Short summary
N is a crucial nutrient that limits phytoplankton growth in large ocean areas. The amount of oceanic N is governed by the balance of N2 fixation and denitrification. Here we incorporate benthic denitrification into an Earth system model with variable particulate stoichiometry. Our model compares better to the observed surface nutrient distributions, marine N2 fixation, and primary production. Benthic denitrification plays an important role in marine N and C cycling and hence the global climate.
David Talmy, Eric Carr, Harshana Rajakaruna, Selina Våge, and Anne Willem Omta
Biogeosciences, 21, 2493–2507, https://doi.org/10.5194/bg-21-2493-2024, https://doi.org/10.5194/bg-21-2493-2024, 2024
Short summary
Short summary
The structure of plankton communities is central to global cycles of carbon, nitrogen, and other elements. This study explored the sensitivity of different assumptions about highest-predator mortality in ecosystem models with contrasting food web structures. In the context of environmental data, we find support for models assuming a density-dependent mortality of the highest predator, irrespective of assumed food web structure.
Yanda Ou and Z. George Xue
Biogeosciences, 21, 2385–2424, https://doi.org/10.5194/bg-21-2385-2024, https://doi.org/10.5194/bg-21-2385-2024, 2024
Short summary
Short summary
Developed for the Gulf of Mexico (2006–2020), a 3D hydrodynamic–biogeochemical model validated against in situ data reveals the impact of nutrients and plankton diversity on dissolved oxygen dynamics. It highlights the role of physical processes, sediment oxygen consumption, and nutrient distribution in shaping bottom oxygen levels and hypoxia. The model underscores the importance of complex plankton interactions for understanding primary production and hypoxia evolution.
Itzel Ruvalcaba Baroni, Elin Almroth-Rosell, Lars Axell, Sam T. Fredriksson, Jenny Hieronymus, Magnus Hieronymus, Sandra-Esther Brunnabend, Matthias Gröger, Ivan Kuznetsov, Filippa Fransner, Robinson Hordoir, Saeed Falahat, and Lars Arneborg
Biogeosciences, 21, 2087–2132, https://doi.org/10.5194/bg-21-2087-2024, https://doi.org/10.5194/bg-21-2087-2024, 2024
Short summary
Short summary
The health of the Baltic and North seas is threatened due to high anthropogenic pressure; thus, different methods to assess the status of these regions are urgently needed. Here, we validated a novel model simulating the ocean dynamics and biogeochemistry of the Baltic and North seas that can be used to create future climate and nutrient scenarios, contribute to European initiatives on de-eutrophication, and provide water quality advice and support on nutrient load reductions for both seas.
Ieuan Higgs, Jozef Skákala, Ross Bannister, Alberto Carrassi, and Stefano Ciavatta
Biogeosciences, 21, 731–746, https://doi.org/10.5194/bg-21-731-2024, https://doi.org/10.5194/bg-21-731-2024, 2024
Short summary
Short summary
A complex network is a way of representing which parts of a system are connected to other parts. We have constructed a complex network based on an ecosystem–ocean model. From this, we can identify patterns in the structure and areas of similar behaviour. This can help to understand how natural, or human-made, changes will affect the shelf sea ecosystem, and it can be used in multiple future applications such as improving modelling, data assimilation, or machine learning.
Joelle Habib, Caroline Ulses, Claude Estournel, Milad Fakhri, Patrick Marsaleix, Mireille Pujo-Pay, Marine Fourrier, Laurent Coppola, Alexandre Mignot, Laurent Mortier, and Pascal Conan
Biogeosciences, 20, 3203–3228, https://doi.org/10.5194/bg-20-3203-2023, https://doi.org/10.5194/bg-20-3203-2023, 2023
Short summary
Short summary
The Rhodes Gyre, eastern Mediterranean Sea, is the main Levantine Intermediate Water formation site. In this study, we use a 3D physical–biogeochemical model to investigate the seasonal and interannual variability of organic carbon dynamics in the gyre. Our results show its autotrophic nature and its high interannual variability, with enhanced primary production, downward exports, and onward exports to the surrounding regions during years marked by intense heat losses and deep mixed layers.
Masihullah Hasanyar, Thomas Romary, Shuaitao Wang, and Nicolas Flipo
Biogeosciences, 20, 1621–1633, https://doi.org/10.5194/bg-20-1621-2023, https://doi.org/10.5194/bg-20-1621-2023, 2023
Short summary
Short summary
The results of this study indicate that biodegradable dissolved organic matter is responsible for oxygen depletion at low flow during summer seasons when heterotrophic bacterial activity is so intense. Therefore, the dissolved organic matter must be well measured in the water monitoring networks in order to have more accurate water quality models. It also advocates for high-frequency data collection for better quantification of the uncertainties related to organic matter.
Xiangyu Liu and Qianlai Zhuang
Biogeosciences, 20, 1181–1193, https://doi.org/10.5194/bg-20-1181-2023, https://doi.org/10.5194/bg-20-1181-2023, 2023
Short summary
Short summary
We are among the first to quantify methane emissions from inland water system in the pan-Arctic. The total CH4 emissions are 36.46 Tg CH4 yr−1 during 2000–2015, of which wetlands and lakes were 21.69 Tg yr−1 and 14.76 Tg yr−1, respectively. By using two non-overlap area change datasets with land and lake models, our simulation avoids small lakes being counted twice as both lake and wetland, and it narrows the gap between two different methods used to quantify regional CH4 emissions.
Corentin Clerc, Laurent Bopp, Fabio Benedetti, Meike Vogt, and Olivier Aumont
Biogeosciences, 20, 869–895, https://doi.org/10.5194/bg-20-869-2023, https://doi.org/10.5194/bg-20-869-2023, 2023
Short summary
Short summary
Gelatinous zooplankton play a key role in the ocean carbon cycle. In particular, pelagic tunicates, which feed on a wide size range of prey, produce rapidly sinking detritus. Thus, they efficiently transfer carbon from the surface to the depths. Consequently, we added these organisms to a marine biogeochemical model (PISCES-v2) and evaluated their impact on the global carbon cycle. We found that they contribute significantly to carbon export and that this contribution increases with depth.
Shuang Gao, Jörg Schwinger, Jerry Tjiputra, Ingo Bethke, Jens Hartmann, Emilio Mayorga, and Christoph Heinze
Biogeosciences, 20, 93–119, https://doi.org/10.5194/bg-20-93-2023, https://doi.org/10.5194/bg-20-93-2023, 2023
Short summary
Short summary
We assess the impact of riverine nutrients and carbon (C) on projected marine primary production (PP) and C uptake using a fully coupled Earth system model. Riverine inputs alleviate nutrient limitation and thus lessen the projected PP decline by up to 0.7 Pg C yr−1 globally. The effect of increased riverine C may be larger than the effect of nutrient inputs in the future on the projected ocean C uptake, while in the historical period increased nutrient inputs are considered the largest driver.
Valeria Di Biagio, Stefano Salon, Laura Feudale, and Gianpiero Cossarini
Biogeosciences, 19, 5553–5574, https://doi.org/10.5194/bg-19-5553-2022, https://doi.org/10.5194/bg-19-5553-2022, 2022
Short summary
Short summary
The amount of dissolved oxygen in the ocean is the result of interacting physical and biological processes. Oxygen vertical profiles show a subsurface maximum in a large part of the ocean. We used a numerical model to map this subsurface maximum in the Mediterranean Sea and to link local differences in its properties to the driving processes. This emerging feature can help the marine ecosystem functioning to be better understood, also under the impacts of climate change.
Michael R. Stukel, Moira Décima, and Michael R. Landry
Biogeosciences, 19, 3595–3624, https://doi.org/10.5194/bg-19-3595-2022, https://doi.org/10.5194/bg-19-3595-2022, 2022
Short summary
Short summary
The biological carbon pump (BCP) transports carbon into the deep ocean, leading to long-term marine carbon sequestration. It is driven by many physical, chemical, and ecological processes. We developed a model of the BCP constrained using data from 11 cruises in 4 different ocean regions. Our results show that sinking particles and vertical mixing are more important than transport mediated by vertically migrating zooplankton. They also highlight the uncertainty in current estimates of the BCP.
Ginevra Rosati, Donata Canu, Paolo Lazzari, and Cosimo Solidoro
Biogeosciences, 19, 3663–3682, https://doi.org/10.5194/bg-19-3663-2022, https://doi.org/10.5194/bg-19-3663-2022, 2022
Short summary
Short summary
Methylmercury (MeHg) is produced and bioaccumulated in marine food webs, posing concerns for human exposure through seafood consumption. We modeled and analyzed the fate of MeHg in the lower food web of the Mediterranean Sea. The modeled spatial–temporal distribution of plankton bioaccumulation differs from the distribution of MeHg in surface water. We also show that MeHg exposure concentrations in temperate waters can be lowered by winter convection, which is declining due to climate change.
Yanda Ou, Bin Li, and Z. George Xue
Biogeosciences, 19, 3575–3593, https://doi.org/10.5194/bg-19-3575-2022, https://doi.org/10.5194/bg-19-3575-2022, 2022
Short summary
Short summary
Over the past decades, the Louisiana–Texas shelf has been suffering recurring hypoxia (dissolved oxygen < 2 mg L−1). We developed a novel prediction model using state-of-the-art statistical techniques based on physical and biogeochemical data provided by a numerical model. The model can capture both the magnitude and onset of the annual hypoxia events. This study also demonstrates that it is possible to use a global model forecast to predict regional ocean water quality.
Eva Ehrnsten, Oleg Pavlovitch Savchuk, and Bo Gustav Gustafsson
Biogeosciences, 19, 3337–3367, https://doi.org/10.5194/bg-19-3337-2022, https://doi.org/10.5194/bg-19-3337-2022, 2022
Short summary
Short summary
We studied the effects of benthic fauna, animals living on or in the seafloor, on the biogeochemical cycles of carbon, nitrogen and phosphorus using a model of the Baltic Sea ecosystem. By eating and excreting, the animals transform a large part of organic matter sinking to the seafloor into inorganic forms, which fuel plankton blooms. Simultaneously, when they move around (bioturbate), phosphorus is bound in the sediments. This reduces nitrogen-fixing plankton blooms and oxygen depletion.
Brandon J. McNabb and Philippe D. Tortell
Biogeosciences, 19, 1705–1721, https://doi.org/10.5194/bg-19-1705-2022, https://doi.org/10.5194/bg-19-1705-2022, 2022
Short summary
Short summary
The trace gas dimethyl sulfide (DMS) plays an important role in the ocean sulfur cycle and can also influence Earth’s climate. Our study used two statistical methods to predict surface ocean concentrations and rates of sea–air exchange of DMS in the northeast subarctic Pacific. Our results show improved predictive power over previous approaches and suggest that nutrient availability, light-dependent processes, and physical mixing may be important controls on DMS in this region.
Xi Wei, Josette Garnier, Vincent Thieu, Paul Passy, Romain Le Gendre, Gilles Billen, Maia Akopian, and Goulven Gildas Laruelle
Biogeosciences, 19, 931–955, https://doi.org/10.5194/bg-19-931-2022, https://doi.org/10.5194/bg-19-931-2022, 2022
Short summary
Short summary
Estuaries are key reactive ecosystems along the land–ocean aquatic continuum and are often strongly impacted by anthropogenic activities. We calculated nutrient in and out fluxes by using a 1-D transient model for seven estuaries along the French Atlantic coast. Among these, large estuaries with high residence times showed higher retention rates than medium and small ones. All reveal coastal eutrophication due to the excess of diffused nitrogen from intensive agricultural river basins.
Krysten Rutherford, Katja Fennel, Dariia Atamanchuk, Douglas Wallace, and Helmuth Thomas
Biogeosciences, 18, 6271–6286, https://doi.org/10.5194/bg-18-6271-2021, https://doi.org/10.5194/bg-18-6271-2021, 2021
Short summary
Short summary
Using a regional model of the northwestern North Atlantic shelves in combination with a surface water time series and repeat transect observations, we investigate surface CO2 variability on the Scotian Shelf. The study highlights a strong seasonal cycle in shelf-wide pCO2 and spatial variability throughout the summer months driven by physical events. The simulated net flux of CO2 on the Scotian Shelf is out of the ocean, deviating from the global air–sea CO2 flux trend in continental shelves.
Frerk Pöppelmeier, David J. Janssen, Samuel L. Jaccard, and Thomas F. Stocker
Biogeosciences, 18, 5447–5463, https://doi.org/10.5194/bg-18-5447-2021, https://doi.org/10.5194/bg-18-5447-2021, 2021
Short summary
Short summary
Chromium (Cr) is a redox-sensitive element that holds promise as a tracer of ocean oxygenation and biological activity. We here implemented the oxidation states Cr(III) and Cr(VI) in the Bern3D model to investigate the processes that shape the global Cr distribution. We find a Cr ocean residence time of 5–8 kyr and that the benthic source dominates the tracer budget. Further, regional model–data mismatches suggest strong Cr removal in oxygen minimum zones and a spatially variable benthic source.
Felipe S. Freitas, Philip A. Pika, Sabine Kasten, Bo B. Jørgensen, Jens Rassmann, Christophe Rabouille, Shaun Thomas, Henrik Sass, Richard D. Pancost, and Sandra Arndt
Biogeosciences, 18, 4651–4679, https://doi.org/10.5194/bg-18-4651-2021, https://doi.org/10.5194/bg-18-4651-2021, 2021
Short summary
Short summary
It remains challenging to fully understand what controls carbon burial in marine sediments globally. Thus, we use a model–data approach to identify patterns of organic matter reactivity at the seafloor across distinct environmental conditions. Our findings support the notion that organic matter reactivity is a dynamic ecosystem property and strongly influences biogeochemical cycling and exchange. Our results are essential to improve predictions of future changes in carbon cycling and climate.
Josué Bock, Martine Michou, Pierre Nabat, Manabu Abe, Jane P. Mulcahy, Dirk J. L. Olivié, Jörg Schwinger, Parvadha Suntharalingam, Jerry Tjiputra, Marco van Hulten, Michio Watanabe, Andrew Yool, and Roland Séférian
Biogeosciences, 18, 3823–3860, https://doi.org/10.5194/bg-18-3823-2021, https://doi.org/10.5194/bg-18-3823-2021, 2021
Short summary
Short summary
In this study we analyse surface ocean dimethylsulfide (DMS) concentration and flux to the atmosphere from four CMIP6 Earth system models over the historical and ssp585 simulations.
Our analysis of contemporary (1980–2009) climatologies shows that models better reproduce observations in mid to high latitudes. The models disagree on the sign of the trend of the global DMS flux from 1980 onwards. The models agree on a positive trend of DMS over polar latitudes following sea-ice retreat dynamics.
Mariana Hill Cruz, Iris Kriest, Yonss Saranga José, Rainer Kiko, Helena Hauss, and Andreas Oschlies
Biogeosciences, 18, 2891–2916, https://doi.org/10.5194/bg-18-2891-2021, https://doi.org/10.5194/bg-18-2891-2021, 2021
Short summary
Short summary
In this study we use a regional biogeochemical model of the eastern tropical South Pacific Ocean to implicitly simulate the effect that fluctuations in populations of small pelagic fish, such as anchovy and sardine, may have on the biogeochemistry of the northern Humboldt Current System. To do so, we vary the zooplankton mortality in the model, under the assumption that these fishes eat zooplankton. We also evaluate the model for the first time against mesozooplankton observations.
Roman Bezhenar, Kyeong Ok Kim, Vladimir Maderich, Govert de With, and Kyung Tae Jung
Biogeosciences, 18, 2591–2607, https://doi.org/10.5194/bg-18-2591-2021, https://doi.org/10.5194/bg-18-2591-2021, 2021
Short summary
Short summary
A new approach to predicting the accumulation of radionuclides in fish was developed by taking into account heterogeneity of distribution of contamination in the organism and dependence of metabolic process rates on the fish mass. Predicted concentrations of radionuclides in fish agreed well with the laboratory and field measurements. The model with the defined generic parameters could be used in marine environments without local calibration, which is important for emergency decision support.
Emil De Borger, Justin Tiano, Ulrike Braeckman, Adriaan D. Rijnsdorp, and Karline Soetaert
Biogeosciences, 18, 2539–2557, https://doi.org/10.5194/bg-18-2539-2021, https://doi.org/10.5194/bg-18-2539-2021, 2021
Short summary
Short summary
Bottom trawling alters benthic mineralization: the recycling of organic material (OM) to free nutrients. To better understand how this occurs, trawling events were added to a model of seafloor OM recycling. Results show that bottom trawling reduces OM and free nutrients in sediments through direct removal thereof and of fauna which transport OM to deeper sediment layers protected from fishing. Our results support temporospatial trawl restrictions to allow key sediment functions to recover.
Britta Munkes, Ulrike Löptien, and Heiner Dietze
Biogeosciences, 18, 2347–2378, https://doi.org/10.5194/bg-18-2347-2021, https://doi.org/10.5194/bg-18-2347-2021, 2021
Short summary
Short summary
Cyanobacteria blooms can strongly aggravate eutrophication problems of water bodies. Their controls are, however, not comprehensively understood, which impedes effective management and protection plans. Here we review the current understanding of cyanobacteria blooms. Juxtaposition of respective field and laboratory studies with state-of-the-art mathematical models reveals substantial uncertainty associated with nutrient demands, grazing, and death of cyanobacteria.
Jens Terhaar, Olivier Torres, Timothée Bourgeois, and Lester Kwiatkowski
Biogeosciences, 18, 2221–2240, https://doi.org/10.5194/bg-18-2221-2021, https://doi.org/10.5194/bg-18-2221-2021, 2021
Short summary
Short summary
The uptake of carbon, emitted as a result of human activities, results in ocean acidification. We analyse 21st-century projections of acidification in the Arctic Ocean, a region of particular vulnerability, using the latest generation of Earth system models. In this new generation of models there is a large decrease in the uncertainty associated with projections of Arctic Ocean acidification, with freshening playing a greater role in driving acidification than previously simulated.
Tobias R. Vonnahme, Martial Leroy, Silke Thoms, Dick van Oevelen, H. Rodger Harvey, Svein Kristiansen, Rolf Gradinger, Ulrike Dietrich, and Christoph Völker
Biogeosciences, 18, 1719–1747, https://doi.org/10.5194/bg-18-1719-2021, https://doi.org/10.5194/bg-18-1719-2021, 2021
Short summary
Short summary
Diatoms are crucial for Arctic coastal spring blooms, and their growth is controlled by nutrients and light. At the end of the bloom, inorganic nitrogen or silicon can be limiting, but nitrogen can be regenerated by bacteria, extending the algal growth phase. Modeling these multi-nutrient dynamics and the role of bacteria is challenging yet crucial for accurate modeling. We recreated spring bloom dynamics in a cultivation experiment and developed a representative dynamic model.
Rebecca M. Wright, Corinne Le Quéré, Erik Buitenhuis, Sophie Pitois, and Mark J. Gibbons
Biogeosciences, 18, 1291–1320, https://doi.org/10.5194/bg-18-1291-2021, https://doi.org/10.5194/bg-18-1291-2021, 2021
Short summary
Short summary
Jellyfish have been included in a global ocean biogeochemical model for the first time. The global mean jellyfish biomass in the model is within the observational range. Jellyfish are found to play an important role in the plankton ecosystem, influencing community structure, spatiotemporal dynamics and biomass. The model raises questions about the sensitivity of the zooplankton community to jellyfish mortality and the interactions between macrozooplankton and jellyfish.
Valeria Di Biagio, Gianpiero Cossarini, Stefano Salon, and Cosimo Solidoro
Biogeosciences, 17, 5967–5988, https://doi.org/10.5194/bg-17-5967-2020, https://doi.org/10.5194/bg-17-5967-2020, 2020
Short summary
Short summary
Events that influence the functioning of the Earth’s ecosystems are of interest in relation to a changing climate. We propose a method to identify and characterise
wavesof extreme events affecting marine ecosystems for multi-week periods over wide areas. Our method can be applied to suitable ecosystem variables and has been used to describe different kinds of extreme event waves of phytoplankton chlorophyll in the Mediterranean Sea, by analysing the output from a high-resolution model.
Maria Paula da Silva, Lino A. Sander de Carvalho, Evlyn Novo, Daniel S. F. Jorge, and Claudio C. F. Barbosa
Biogeosciences, 17, 5355–5364, https://doi.org/10.5194/bg-17-5355-2020, https://doi.org/10.5194/bg-17-5355-2020, 2020
Short summary
Short summary
In this study, we analyze the seasonal changes in the dissolved organic matter (DOM) quality (based on its optical properties) in four Amazon floodplain lakes. DOM plays a fundamental role in surface water chemistry, controlling metal bioavailability and mobility, and nutrient cycling. The model proposed in our paper highlights the potential to study DOM quality at a wider spatial scale, which may help to better understand the persistence and fate of DOM in the ecosystem.
Zhengchen Zang, Z. George Xue, Kehui Xu, Samuel J. Bentley, Qin Chen, Eurico J. D'Sa, Le Zhang, and Yanda Ou
Biogeosciences, 17, 5043–5055, https://doi.org/10.5194/bg-17-5043-2020, https://doi.org/10.5194/bg-17-5043-2020, 2020
Taylor A. Shropshire, Steven L. Morey, Eric P. Chassignet, Alexandra Bozec, Victoria J. Coles, Michael R. Landry, Rasmus Swalethorp, Glenn Zapfe, and Michael R. Stukel
Biogeosciences, 17, 3385–3407, https://doi.org/10.5194/bg-17-3385-2020, https://doi.org/10.5194/bg-17-3385-2020, 2020
Short summary
Short summary
Zooplankton are the smallest animals in the ocean and important food for fish. Despite their importance, zooplankton have been relatively undersampled. To better understand the zooplankton community in the Gulf of Mexico (GoM), we developed a model to simulate their dynamics. We found that heterotrophic protists are important for supporting mesozooplankton, which are the primary prey of larval fish. The model developed in this study has the potential to improve fisheries management in the GoM.
Iris Kriest, Paul Kähler, Wolfgang Koeve, Karin Kvale, Volkmar Sauerland, and Andreas Oschlies
Biogeosciences, 17, 3057–3082, https://doi.org/10.5194/bg-17-3057-2020, https://doi.org/10.5194/bg-17-3057-2020, 2020
Short summary
Short summary
Constants of global biogeochemical ocean models are often tuned
by handto match observations of nutrients or oxygen. We investigate the effect of this tuning by optimising six constants of a global biogeochemical model, simulated in five different offline circulations. Optimal values for three constants adjust to distinct features of the circulation applied and can afterwards be swapped among the circulations, without losing too much of the model's fit to observed quantities.
Laura Haffert, Matthias Haeckel, Henko de Stigter, and Felix Janssen
Biogeosciences, 17, 2767–2789, https://doi.org/10.5194/bg-17-2767-2020, https://doi.org/10.5194/bg-17-2767-2020, 2020
Short summary
Short summary
Deep-sea mining for polymetallic nodules is expected to have severe environmental impacts. Through prognostic modelling, this study aims to provide a holistic assessment of the biogeochemical recovery after a disturbance event. It was found that the recovery strongly depends on the impact type; e.g. complete removal of the surface sediment reduces seafloor nutrient fluxes over centuries.
Fabian A. Gomez, Rik Wanninkhof, Leticia Barbero, Sang-Ki Lee, and Frank J. Hernandez Jr.
Biogeosciences, 17, 1685–1700, https://doi.org/10.5194/bg-17-1685-2020, https://doi.org/10.5194/bg-17-1685-2020, 2020
Short summary
Short summary
We use a numerical model to infer annual changes of surface carbon chemistry in the Gulf of Mexico (GoM). The main seasonality drivers of partial pressure of carbon dioxide and aragonite saturation state from the model are temperature and river runoff. The GoM basin is a carbon sink in winter–spring and carbon source in summer–fall, but uptake prevails near the Mississippi Delta year-round due to high biological production. Our model results show good correspondence with observational studies.
Simon J. Parker
Biogeosciences, 17, 305–315, https://doi.org/10.5194/bg-17-305-2020, https://doi.org/10.5194/bg-17-305-2020, 2020
Short summary
Short summary
Dissolved oxygen (DO) models typically assume constant ecosystem respiration over the course of a single day. Using a data-driven approach, this research examines this assumption in four streams across two (hydro-)geological types (Chalk and Greensand). Despite hydrogeological equivalence in terms of baseflow index for each hydrogeological pairing, model suitability differed within, rather than across, geology types. This corresponded with associated differences in timings of DO minima.
Fabrice Lacroix, Tatiana Ilyina, and Jens Hartmann
Biogeosciences, 17, 55–88, https://doi.org/10.5194/bg-17-55-2020, https://doi.org/10.5194/bg-17-55-2020, 2020
Short summary
Short summary
Contributions of rivers to the oceanic cycling of carbon have been poorly represented in global models until now. Here, we assess the long–term implications of preindustrial riverine loads in the ocean in a novel framework which estimates the loads through a hierarchy of weathering and land–ocean export models. We investigate their impacts for the oceanic biological production and air–sea carbon flux. Finally, we assess the potential incorporation of the framework in an Earth system model.
Patrick A. Rafter, Aaron Bagnell, Dario Marconi, and Timothy DeVries
Biogeosciences, 16, 2617–2633, https://doi.org/10.5194/bg-16-2617-2019, https://doi.org/10.5194/bg-16-2617-2019, 2019
Short summary
Short summary
The N isotopic composition of nitrate (
nitrate δ15N) is a useful tracer of ocean N cycling and many other ocean processes. Here, we use a global compilation of marine nitrate δ15N as an input, training, and validating dataset for an artificial neural network (a.k.a.,
machine learning) and examine basin-scale trends in marine nitrate δ15N from the surface to the seafloor.
Elena Terzić, Paolo Lazzari, Emanuele Organelli, Cosimo Solidoro, Stefano Salon, Fabrizio D'Ortenzio, and Pascal Conan
Biogeosciences, 16, 2527–2542, https://doi.org/10.5194/bg-16-2527-2019, https://doi.org/10.5194/bg-16-2527-2019, 2019
Short summary
Short summary
Measuring ecosystem properties in the ocean is a hard business. Recent availability of data from Biogeochemical-Argo floats can help make this task easier. Numerical models can integrate these new data in a coherent picture and can be used to investigate the functioning of ecosystem processes. Our new approach merges experimental information and model capabilities to quantitatively demonstrate the importance of light and water vertical mixing for algae dynamics in the Mediterranean Sea.
Jens Terhaar, James C. Orr, Marion Gehlen, Christian Ethé, and Laurent Bopp
Biogeosciences, 16, 2343–2367, https://doi.org/10.5194/bg-16-2343-2019, https://doi.org/10.5194/bg-16-2343-2019, 2019
Short summary
Short summary
A budget of anthropogenic carbon in the Arctic Ocean, the main driver of open-ocean acidification, was constructed for the first time using a high-resolution ocean model. The budget reveals that anthropogenic carbon enters the Arctic Ocean mainly by lateral transport; the air–sea flux plays a minor role. Coarser-resolution versions of the same model, typical of earth system models, store less anthropogenic carbon in the Arctic Ocean and thus underestimate ocean acidification in the Arctic Ocean.
Taylor S. Martin, François Primeau, and Karen L. Casciotti
Biogeosciences, 16, 347–367, https://doi.org/10.5194/bg-16-347-2019, https://doi.org/10.5194/bg-16-347-2019, 2019
Short summary
Short summary
Nitrite is a key intermediate in many nitrogen (N) cycling processes in the ocean, particularly in areas with low oxygen that are hotspots for N loss. We have created a 3-D global N cycle model with nitrite as a tracer. Stable isotopes of N are also included in the model and we are able to model the isotope fractionation associated with each N cycling process. Our model accurately represents N concentrations and isotope distributions in the ocean.
Camille Richon, Jean-Claude Dutay, Laurent Bopp, Briac Le Vu, James C. Orr, Samuel Somot, and François Dulac
Biogeosciences, 16, 135–165, https://doi.org/10.5194/bg-16-135-2019, https://doi.org/10.5194/bg-16-135-2019, 2019
Short summary
Short summary
We evaluate the effects of climate change and biogeochemical forcing evolution on the nutrient and plankton cycles of the Mediterranean Sea for the first time. We use a high-resolution coupled physical and biogeochemical model and perform 120-year transient simulations. The results indicate that changes in external nutrient fluxes and climate change may have synergistic or antagonistic effects on nutrient concentrations, depending on the region and the scenario.
Angela M. Kuhn, Katja Fennel, and Ilana Berman-Frank
Biogeosciences, 15, 7379–7401, https://doi.org/10.5194/bg-15-7379-2018, https://doi.org/10.5194/bg-15-7379-2018, 2018
Short summary
Short summary
Recent studies demonstrate that marine N2 fixation can be carried out without light. However, direct measurements of N2 fixation in dark environments are relatively scarce. This study uses a model that represents biogeochemical cycles at a deep-ocean location in the Gulf of Aqaba (Red Sea). Different model versions are used to test assumptions about N2 fixers. Relaxing light limitation for marine N2 fixers improved the similarity between model results and observations of deep nitrate and oxygen.
Prima Anugerahanti, Shovonlal Roy, and Keith Haines
Biogeosciences, 15, 6685–6711, https://doi.org/10.5194/bg-15-6685-2018, https://doi.org/10.5194/bg-15-6685-2018, 2018
Short summary
Short summary
Minor changes in the biogeochemical model equations lead to major dynamical changes. We assessed this structural sensitivity for the MEDUSA biogeochemical model on chlorophyll and nitrogen concentrations at five oceanographic stations over 10 years, using 1-D ensembles generated by combining different process equations. The ensemble performed better than the default model in most of the stations, suggesting that our approach is useful for generating a probabilistic biogeochemical ensemble model.
Audrey Gimenez, Melika Baklouti, Thibaut Wagener, and Thierry Moutin
Biogeosciences, 15, 6573–6589, https://doi.org/10.5194/bg-15-6573-2018, https://doi.org/10.5194/bg-15-6573-2018, 2018
Short summary
Short summary
During the OUTPACE cruise conducted in the oligotrophic to ultra-oligotrophic region of the western tropical South Pacific, two contrasted regions were sampled in terms of N2 fixation rates, primary production rates and nutrient availability. The aim of this work was to investigate the role of N2 fixation in the differences observed between the two contrasted areas by comparing two simulations only differing by the presence or not of N2 fixers using a 1-D biogeochemical–physical coupled model.
Cited articles
Ancapichún, S. and Garcés-Vargas, J.: Variability of the Southeast Pacific Subtropical Anticyclone and its impact on sea surface temperature off north-central Chile, Cienc. Mar., 41, 1–20, https://doi.org/10.7773/cm.v41i1.2338, 2015.
Arévalo-Martínez, D., Kock, L. A., Löscher, C. R., Schmitz, R. A., and Bange, R. A.: Massive nitrous oxide emissions from the tropical South Pacific Ocean, Nat. Geosci., 8, 530–533, https://doi.org/10.1038/NGEO2469, 2015.
Bettencourt, J. H., López, C., Hernández-García, E., Montes, I., Sudre, J., Dewitte, B., Paulmier A., and Garçon, V.: Boundaries of the Peruvian Oxygen Minimum Zone shaped by coherent mesoscale dynamics, Nat. Geosci., 8, 937–940,, https://doi.org/10.1038/ngeo2570, 2015.
Bianchi, D., Dunne, J. P., Sarmiento, J. L., and Galbraith, E. D.: Data-based estimates of suboxia, denitrification, and N2O production in the ocean and their sensitivities to dissolved O2, Global Biogeochem. Cy., 26, GB2009, https://doi.org/10.1029/2011GB004209, 2012.
Bianucci, L., Fennel, K., and Denman, K. L.: Role of sediment denitrification in water column oxygen dynamics: comparison of the North American East and West Coasts, Biogeosciences, 9, 2673–2682, https://doi.org/10.5194/bg-9-2673-2012, 2012.
Brandt, P., Bange, H. W., Banyte, D., Dengler, M., Didwischus, S.-H., Fischer, T., Greatbatch, R. J., Hahn, J., Kanzow, T., Karstensen, J., Körtzinger, A., Krahmann, G., Schmidtko, S., Stramma, L., Tanhua, T., and Visbeck, M.: On the role of circulation and mixing in the ventilation of oxygen minimum zones with a focus on the eastern tropical North Atlantic, Biogeosciences, 12, 489–512, https://doi.org/10.5194/bg-12-489-2015, 2015.
Cabré, A., Marinov, I., Bernardello, R., and Bianchi, D.: Oxygen minimum zones in the tropical Pacific across CMIP5 models: mean state differences and climate change trends, Biogeosciences, 12, 5429–5454, https://doi.org/10.5194/bg-12-5429-2015, 2015.
Cambon G., Goubanova, K., Marchesiello, P., Dewitte, B., Illig, S., and Echevin, V.: Assessing the impact of downscaled winds on a regional ocean model simulation of the Humboldt system, Ocean Model., 65, 11–24, 2013.
Chavez, F. P., Bertrand, A., Guevara-Carrasco, R., Soler, P., and Csirke, J.: The northern Humboldt Current System: Brief history, present status and a view towards the future, Prog. Oceanogr., 79, 95–105, 2008.
Chaigneau, A. and Pizarro, O.: Eddy characteristics in the eastern South Pacific, J. Geophys. Res., 110, C06005, https://doi.org/10.1029/2004JC002815, 2005.
Chaigneau, A., Eldin G., and Dewitte, B.: Eddy activity in the four major upwelling systems from satellite altimetry (1992–2007), Prog. Oceanogr., 83, 117–123, https://doi.org/10.1016/j.pocean.2009.07.012, 2009.
Cocco, V., Joos, F., Steinacher, M., Frölicher, T. L., Bopp, L., Dunne, J., Gehlen, M., Heinze, C., Orr, J., Oschlies, A., Schneider, B., Segschneider, J., and Tjiputra, J.: Oxygen and indicators of stress for marine life in multi-model global warming projections, Biogeosciences, 10, 1849–1868, https://doi.org/10.5194/bg-10-1849-2013, 2013.
Colas, F., McWillimas, J. C., Capet, X., and Kurian, J.: Heat balance and eddies in the Peru-Chile current system, Clim. Dynam., 39, 509–529, https://doi.org/10.1007/s00382-011-1170-6, 2012.
Combes, V., Hormazabal, S., and Di Lorenzo, E.: Interannual variability of the subsurface eddy field in the Southeast Pacific, J. Gephys. Res., 120, 4907–4924, https://doi.org/10.1002/2014JC010265, 2015.
Cornejo, M. and Farías, L.: Following the N2O consumption in the oxygen minimum zone of the eastern South Pacific, Biogeosciences, 9, 3205–3212, https://doi.org/10.5194/bg-9-3205-2012, 2012.
Cornejo, M., Farías, L., and Paulmier, A.: Temporal variability in N2O water content and its air-sea exchange in an upwelling area off central Chile (36° S), Mar. Chem., 101, 85–94, https://doi.org/10.1016/j.marchem.2006.01.004, 2006.
Czeschel, R., Stramma, L., Schwarzkopf, F. U., Giese, B. S., Funk, A., and Karstensen, J.: Middepth circulation of the eastern tropical South Pacific and its link to the oxygen minimum zone, J. Geophys. Res., 116, C01015, https://doi.org/10.1029/2010JC006565, 2011.
Czeschel, R., Stramma, L., Weller, R. A., and Fischer, T.: Circulation, eddies, oxygen, and nutrient changes in the eastern tropical South Pacific Ocean, Ocean Sci., 11, 455–470, https://doi.org/10.5194/os-11-455-2015, 2015.
daSilva A., Young, A. C., and Levitus, S.: Atlas of surface marine data 1994. Algorithms and procedures. vol. 1 Technical Report 6, US Department of Commerce, NOAA, NESDIS, 1994.
Dewitte B., Ramos, M., Echevin, V., Pizarro, O., and duPenhoat, Y.: Vertical structure variability in a seasonal simulation of a medium-resolution regional model simulation of the South Eastern Pacific, Prog. Oceanogr., 79, 120–137, 2008.
Dewitte, B., Illig, S.,Renault, L., Goubanova, K., Takahashi, K., Gushchina, D., Mosquera, K., and Purca, S.: Modes of covariability between sea surface temperature and wind stress intraseasonal anomalies along the coast of Peru from satellite observations (2000–2008), J. Geophys. Res., 116, C04028, https://doi.org/10.1029/2010JC006495, 2011.
Dewitte, B., Vazquez-Cuervo, J., Goubanova, K., Illig, S., Takahashi, K., Cambon, G., Purca, S., Correa, D., Gutiérrez, D., Sifeddine, A., and Ortlieb, L.: Change in El Nino flavours over 1958–2008: Implications for the long-term trend of the upwelling off Peru, Deep-Sea Res. Pt. II, 77–80, 143–156, https://doi.org/10.1016/j.dsr2.2012.04.011, 2012.
Dunn J. R. and Ridgway, K. R.: Mapping ocean properties in regions of complex topography, Deep-Sea Res. Pt. I, 49, 591–604, 2002.
Dunne, J. P., Armstrong, R. A., Gnanadesikan, A., and Sarmiento, J. L.: Empirical and mechanistic models for the particle export ratio, Global Biogeochem. Cy., 19, GB4026, https://doi.org/10.1029/2004gb002390, 2005.
Duteil, O. and Oschlies, A.: Sensitivity of simulated extent and future evolution of marine suboxia to mixing intensity, Geophys. Res. Lett., 38, L06607, https://doi.org/10.1029/2011GL046877, 2011.
Duteil, O., Schwarzkopf, F. U., Böning, C. W., and Oschlies, A.: Major role of the equatorial current system in setting oxygen levels in the eastern tropical Atlantic Ocean: A high-resolution model study, Geophys. Res. Lett., 41, 2033–2040, https://doi.org/10.1002/2013GL058888, 2014.
Echevin, V., Aumont, O., Ledesma, J., and Flores, G.: The seasonal cycle of surface chlorophyll in the Peruvian upwelling system: A modelling study, Progr. Oceanogr., 79, 2–4, 167–176, 2008.
Echevin, V., Colas, F., Chaigneau, A., and Penven, P.: Sensitivity of the Northern Humboldt Current System nearshore modeled circulation to initial and boundary conditions, J. Geophys. Res., 116, C07002, https://doi.org/10.1029/2010JC006684, 2011.
Eliassen, A. and Palm, E.: On the transfer of energy in stationary mountain waves, Geofys. Publ., 22, 1–23, 1960.
Farías, L., Paulmier, A., and Gallegos, M.: Nitrous oxide and N-nutrient cycling in the oxygen minimum zone off northern Chile, Deep-Sea Res. Pt. I, 54, 164–180, https://doi.org/10.1016/j.dsr.2006.11.003, 2007.
Fuenzalida, R., Schneider, W., Garces-Vargas, J., Bravo, L., and Lange, C.: Vertical and horizontal extension of the oxygen minimum zone in the eastern South Pacific Ocean, Deep-Sea Res. Pt. II, 56, 992–1003, https://doi.org/10.1016/j.dsr2.2008.11.001, 2009.
García, H. E. and Gordon, L. I.: Oxygen solubility in seawater – better fitting equations, Limnol. Oceanogr., 37, 1307–1312, 1992.
Goubanova, K., Echevin, V., Dewitte, B., Codron, F., Takahashi, K., Terray, P., and Vrac, M.: Statistical downscaling of sea-surface wind over the Peru–Chile upwelling region: diagnosing the impact of climate change from the IPSL-CM4 model, Clim. Dynam., 36, 1365, https://doi.org/10.1007/s00382-010-0824-0, 2011.
Gruber, N.: The marine nitrogen cycle: Overview of distributions and processes, in: Nitrogen in the marine environment, second Edn., edited by: Capone, D. G., Bronk, D. A., Mulholland, M. R., and Carpenter, E. J., Elsevier, Amsterdam, 1–50, 2008.
Gruber, N., Lachkar, Z., Frenzel, H., Marchesiello, P., Münnich, M., McWilliams, J. C., Nagai, T., and Plattner, G. K.: Eddy-induced reduction of biological production in eastern boundary upwelling systems, Nat. Geosci., 4, 787–792, https://doi.org/10.1038/ngeo1273, 2011.
Gutiérrez, D., Enriquez, E., Purca, S., Quipuzcoa, L., Marquina, R., Flores, G., and Graco, M.: Oxygenation episodes on the continental shelf of central Peru: remote forcing and benthic ecosystem response, Prog. Oceanogr., 79, 177–189, 2008.
Gutiérrez, D., Bouloubassi, I., Sifeddine, A., Purca, S., Goubanova, K., Graco, M., Field, D., Mejanelle, L., Velazco, F., Lorre, A., Salvatteci, R., Quispe, D., Vargas, G., Dewitte, B., and Ortlieb, L.: Coastal cooling and increased productivity in the main upwelling zone off Peru since the mid-twentieth century, Geophys. Res. Lett., 38, L07603, https://doi.org/10.1029/2010GL046324, 2011.
Gutknecht, E., Dadou, I., Le Vu, B., Cambon, G., Sudre, J., Garçon, V., Machu, E., Rixen, T., Kock, A., Flohr, A., Paulmier, A., and Lavik, G.: Coupled physical/biogeochemical modeling including O2-dependent processes in the Eastern Boundary Upwelling Systems: application in the Benguela, Biogeosciences, 10, 3559–3591, https://doi.org/10.5194/bg-10-3559-2013, 2013a.
Gutknecht, E., Dadou, I., Marchesiello, P., Cambon, G., Le Vu, B., Sudre, J., Garçon, V., Machu, E., Rixen, T., Kock, A., Flohr, A., Paulmier, A., and Lavik, G.: Nitrogen transfers off Walvis Bay: a 3-D coupled physical/biogeochemical modeling approach in the Namibian upwelling system, Biogeosciences, 10, 4117–4135, https://doi.org/10.5194/bg-10-4117-2013, 2013b.
Henley, B. J., Gergis, J., Karoly, D. J., Power, S. B., Kennedy, J., and Folland, C. K.: A Tripole Index for the Interdecadal Pacific Oscillation, Clim. Dynam., 45, 3077–3090, https://doi.org/10.1007/s00382-015-2525-1, 2015.
Henson, S. A., Sanders, R., and Madsen, E.: Global patterns in efficiency of particulate organic carbon export and transfer to the deep ocean, Global Biogeochem. Cy., 26, GB1028, https://doi.org/10.1029/2011gb004099, 2012.
Illig, S., Dewitte, B., Goubanova, K., Cambon, G., Boucharel, J., Monetti, F., Romero, C., Purca, S., and Flores, R.: Forcing mechanisms of intraseasonal SST variability off central Peru in 2000–2008, J. Geophys. Res., 119, 3548–3573, https://doi.org/10.1002/2013JC009779, 2014.
Karstensen, J., Stramma, L., and Visbeck, M.: Oxygen minimum zones in the eastern tropical Atlantic and Pacific oceans, Progr. Oceanogr., 77, 331–350, 2008.
Karstensen, J., Fiedler, B., Schütte, F., Brandt, P., Körtzinger, A., Fischer, G., Zantopp, R., Hahn, J., Visbeck, M., and Wallace, D.: Open ocean dead zones in the tropical North Atlantic Ocean, Biogeosciences, 12, 2597–2605, https://doi.org/10.5194/bg-12-2597-2015, 2015.
Kelly, K., Beardsley, R., Limeburner, R., and Brink, K.: Variability of the near-surface eddy kinetic energy in the California Current based on altimetric, drifter and moored data, J. Geophys. Res., 103, 13067–13083, 1998.
Kock, A., Arévalo-Martínez, D. L., Löscher, C. R., and Bange, H. W.: Extreme N2O accumulation in the coastal oxygen minimum zone off Peru, Biogeosciences, 13, 827–840, https://doi.org/10.5194/bg-13-827-2016, 2016.
Large, W. G., McWilliams, J. C., and Doney, S. C.: Oceanic vertical mixing: A review and a model with a nonlocal boundary layer parameterization, Rev. Geophys., 32, 363–403, https://doi.org/10.1029/94RG01872, 1994.
Law, C. S., Brévière, E., de Leeuw, G., Garçon, V., Guieu, C., Kieber, D. J., Kontradowitz, S., Paulmier, A., Quinn, P. K., Saltzman, E. S., Stefels, J., and von Glasow, R.: Evolving research directions in Surface Ocean – Lower Atmosphere (SOLAS) science, Environ. Chem., 10, 1–16, https://doi.org/10.1071/EN12159, 2013.
Libes, S. M.: An Introduction to Marine Biogeochemistry, John Wiley and Sons, New York, 734 pp., 1992.
Llanillo, P. J., Karstensen, J., Pelegrí, J. L., and Stramma, L.: Physical and biogeochemical forcing of oxygen and nitrate changes during El Niño/El Viejo and La Niña/La Vieja upper-ocean phases in the tropical eastern South Pacific along 86° W, Biogeosciences, 10, 6339–6355, https://doi.org/10.5194/bg-10-6339-2013, 2013.
Luyten, J. R., Pedlosky, J., and Stommel, H.: The ventilated thermocline, J. Phys. Oceanogr., 13, 292–309, 1983.
McClain, C. R., Cleave, M. L., Feldman, G. C., Gregg, W. W., Hooker, S. B., and Kuring, N.: Science quality SeaWiFS data for global biosphere research, Sea Technol., 39, 10–16, 1998.
Montes, I., Colas, F., Capet, X., and Schneider, W.: On the pathways of the equatorial subsurface currents in the Eastern Equatorial Pacific and their contributions to the Peru-Chile Undercurrent, J. Geophys. Res., 115, C09003, https://doi.org/10.1029/2009JC005710, 2010.
Montes, I., Dewitte, B., Gutknecht, E., Paulmier, A., Dadou, I., Oschlies, A., and Garçon, V.: High-resolution modeling of the Eastern Tropical Pacific oxygen minimum zone: Sensitivity to the tropical oceanic circulation, J. Geophys. Res.-Oceans, 119, 5515–5532, https://doi.org/10.1002/2014JC009858, 2014.
Morales, C. E., Hormazabal, S. E., and Blanco, J.: Interannual variability in the mesoscale distribution of the depth of the upper boundary of the oxygen minimum layer off northern Chile (18–24S): Implications for the pelagic system and biogeochemical cycling, J. Mar. Res., 57, 909–932, https://doi.org/10.1357/002224099321514097, 1999.
Morel, A. and Berthon, J. F.: Surface pigments, algal biomass profiles, and potential production of euphotic layer: Relationship reinvestigated in view of remote-sensing applications, Limnol. Oceanogr., 34, 1545–1562, 1989.
Nagai, T., Gruber, N., Frenzel, H., Lachkar, Z., McWilliams, J. C., and Plattner, G.-K.: Dominant role of eddies and filaments in the offshore transport of carbon and nutrients in the California Current System, J. Geophys. Res.-Oceans, 120, 5318–5341, https://doi.org/10.1002/2015JC010889, 2015.
Nerem, R. S., Chambers, D. P., Choe, C., and Mitchum, G. T.: Estimating mean sea level change from the TOPEX and Jason altimeter missions, Mar. Geod., 33, Supplement 1, 435–446, 2010.
O'Reilly, J. E., Maritorena, S., Siegel, D., O'Brien, M. O., Toole, D., Mitchell, B. G., Kahru, M., Chavez, F., Strutton, P. G., Cota, G. F., Hooker, S. B., McClain, C., Carder, K., Muller-Karger, F., Harding, L., Magnuson, A., Phinney, D., Moore, G., Aiken, J., Arrigo, K. R., Letelier, R. M., and Culver, M.: Ocean chlorophyll a algorithms for SeaWiFS, OC2, and OC4: Version 4, in: SeaWiFS Postlaunch Calibration and Validation Analyses, Part 3, NASA Tech. Memo 2000–206892, vol. 11, edited by: Hooker, B., and Firestone, E. R., NASA, Goddard Space Flight Center, Greenbelt, Maryland, 9–19, 2000.
Paulmier, A. and Ruiz-Pino, D.: Oxygen minimum zones (OMZs) in the modern ocean, Prog. Oceanogr., 80, 3–4, 113–128, https://doi.org/10.1016/j.pocean.2008.08.001, 2009.
Paulmier, A., Ruiz-Pino, D., Garçon, V., and Farías, L.: Maintaining of the East South Pacific Oxygen Minimum Zone (OMZ) off Chile, Geophys. Res. Lett., 33, L20601, https://doi.org/10.1029/2006GL026801, 2006.
Paulmier, A., Ruiz-Pino, D., and Garçon, V.: The Oxygen Minimum Zone (OMZ) off Chile as intense source of CO2 and N2O, Cont. Shelf Res., 28, 2746–2756, 2008.
Paulmier, A., Ruiz-Pino, D., and Garçon, V.: CO2 maximum in the oxygen minimum zone (OMZ), Biogeosciences, 8, 239–252, https://doi.org/10.5194/bg-8-239-2011, 2011.
Penven, P., Echevin, V., Pasapera, J., Colas, F., and Tam, J.: Average circulation, seasonal cycle, and mesoscale dynamics of the Peru Current System: a modeling approach, J. Geophys. Res., 110, C10021, https://doi.org/10.1029/2005JC002945, 2005.
Pizarro, O., Shaffer, G., Dewitte, B., and Ramos, M.: Dynamics of seasonal and interannual variability of the Peru-Chile Undercurrent, Geophys. Res. Lett., 29, 1581, https://doi.org/10.1029/2002GL014790, 2002.
Prince, E. D. and Goodyear, C. P.: Hypoxia-based habitat compression of tropical pelagic fishes, Fish. Oceanogr., 15, 451–464, https://doi.org/10.1111/j.1365-2419.2005.00393.x, 2006.
Qiu, B., Chen, S., and Sasaki, H.: Generation of the North Equatorial Undercurrent jets by triad baroclinic Rossby wave interactions, J. Phys. Oceanogr., 43, 2682–2698, https://doi.org/10.1175/JPO-D-13-099.1, 2013.
Rahn, D., Rosenblüth, B., and Rutllant, J.: Detecting Subtle Seasonal Transitions of Upwelling in North-Central Chile, J. Phys. Oceanogr., 45, 854–867, 2015.
Ramos, M., Dewitte, B., Pizarro, O., and Garric, G.: Vertical propagation of extratropical Rossby waves during the 1997–1998 El Niño off the west coast of South America in a medium-resolution OGCM simulation, J. Geophys. Res., 113, C08041, https://doi.org/10.1029/2007JC004681, 2008.
Resplandy, L., Lévy, M., Bopp, L., Echevin, V., Pous, S., Sarma, V. V. S. S., and Kumar, D.: Controlling factors of the oxygen balance in the Arabian Sea's OMZ, Biogeosciences, 9, 5095–5109, https://doi.org/10.5194/bg-9-5095-2012, 2012.
Reynolds, R. W., Smith, T. M., Liu, C., Chelton, D. B., Casey, K. S., and Schlax, M. G.: Daily high-resolution blended analyses for sea surface temperature, J. Climate, 20, 5473–5496, 2007.
Richter, I.: Climate model biases in the eastern tropical oceans: causes, impacts and ways forward, WIREs Clim. Change, 6, 345–358, https://doi.org/10.1002/wcc.338, 2015.
Ridgway K. R., Dunn, J. R., and Wilkin, J. L.: Ocean interpolation by four-dimensional least squares – Application to the waters around Australia, J. Atmos. Ocean. Tech., 19, 1357–1375, 2002.
Shchepetkin, A. F. and McWilliams, J. C.: The regional oceanic modeling system: a split-explicit, free-surface, topography-following-coordinate ocean model, Ocean Model., 9, 347–404, 2005.
Shchepetkin, A. F. and McWilliams, J. C.: Correction and commentary for “Ocean forecasting in terrain-following coordinates: Formulation and skill assessment of the regional ocean modeling system” by Haidvogel et al., J. Comp. Phys., 227, 3595–3624, 2009.
Siedlecki, S. A., Banas, N. S., Davis, K. A., Giddings, S., Hickey, B. M., MacCready, P., Connolly, T., and Geier, S.: Seasonal and interannual oxygen variability on the Washington and Oregon continental shelves, J. Geophys. Res.-Oceans, 120, 608–633, https://doi.org/10.1002/2014JC010254, 2015.
Stramma, L., Johnson, G. C., Sprintall, J., and Mohrholz, V.: Expanding oxygen-minimum zones in the tropical oceans, Science, 320, 655–658, 2008.
Stramma, L., Johnson, G. C., Firing, E., and Schmidtko, S.: Eastern Pacific oxygen minimum zones: Supply paths and multidecadal changes, J. Geophys. Res., 115, C09011, https://doi.org/10.1029/2009JC005976, 2010.
Stramma, L., Oschlies, A., and Schmidtko, S.: Mismatch between observed and modeled trends in dissolved upper-ocean oxygen over the last 50 yr, Biogeosciences, 9, 4045–4057, https://doi.org/10.5194/bg-9-4045-2012, 2012.
Stramma, L., Bange, H. W., Czeschel, R., Lorenzo, A., and Frank, M.: On the role of mesoscale eddies for the biological productivity and biogeochemistry in the eastern tropical Pacific Ocean off Peru, Biogeosciences, 10, 7293–7306, https://doi.org/10.5194/bg-10-7293-2013, 2013.
Stramma, L., Weller, R. A., Czeschel, R., and Bigorre, S.: Eddies and an extreme water mass anomaly observed in the eastern south Pacific at the Stratus mooring, J. Geophys. Res.-Oceans, 119, 1068–1083, 2014.
Thomsen, S., Kanzow, T., Krahmann, G., Greatbatch, R. J., Dengler, M., and Lavik, G.: The formation of a subsurface anticyclonic eddy in the Peru-Chile Undercurrent and its impact on the near-coastal salinity, oxygen, and nutrients distributions, J. Geophys. Res.-Oceans, 121, 476–501, https://doi.org/10.1002/2015JC010878, 2016. Thomsen, S., Kanzow, T., Krahmann, G., Greatbatch, R. J., Dengler, M., and Lavik, G.: The formation of a subsurface anticyclonic eddy in the Peru-Chile Undercurrent and its impact on the near-coastal salinity, oxygen, and nutrients distributions, J. Geophys. Res.-Oceans, 121, 1, 476–501, https://doi.org/10.1002/2015JC010878, 2016.
Short summary
The Southeast Pacific hosts one of the most extensive oxygen minimum zone (OMZ), yet the dynamics behind it remain unveiled. We use a high-resolution coupled physical–biogeochemical model to document the seasonal cycle of dissolved oxygen within the OMZ in both the coastal zone and the offshore ocean. The OMZ seasonal variability is driven by the seasonal fluctuations of the dissolved oxygen eddy flux, with a peak in Austral winter (fall) at the northern (southern) boundary and near the coast.
The Southeast Pacific hosts one of the most extensive oxygen minimum zone (OMZ), yet the...
Altmetrics
Final-revised paper
Preprint