Articles | Volume 21, issue 22
https://doi.org/10.5194/bg-21-5233-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-21-5233-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| Highlight paper
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25 Nov 2024
Research article | Highlight paper |
| 25 Nov 2024
| 25 Nov 2024
Microbial strong organic-ligand production is tightly coupled to iron in hydrothermal plumes
Joint Institute for the Study of Atmosphere and Ocean, University of Washington, 3737 Brooklyn Avenue NE, Seattle, WA 98195, USA
Cooperative Institute for Climate, Ocean, and Ecosystem Studies, University of Washington, 3737 Brooklyn Avenue NE, Seattle, WA 98195, USA
School of Oceanography, University of Washington, 1501 NE Boat Street, Seattle, WA 98195, USA
Patrick J. Monreal
CORRESPONDING AUTHOR
School of Oceanography, University of Washington, 1501 NE Boat Street, Seattle, WA 98195, USA
Earth Systems Program, Stanford University, 473 Via Ortega, Stanford, CA 94305, USA
Justine B. Albers
Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, CA 93106, USA
Alastair J. M. Lough
Department of Ocean and Earth Sciences, National Oceanography Centre, University of Southampton, European Way, Southampton SO14 3ZH, UK
Alyson E. Santoro
Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, CA 93106, USA
Travis Mellett
School of Oceanography, University of Washington, 1501 NE Boat Street, Seattle, WA 98195, USA
College of Marine Science, University of South Florida, 140 7th Avenue South, St. Petersburg, FL 33701, USA
Kristen N. Buck
College of Marine Science, University of South Florida, 140 7th Avenue South, St. Petersburg, FL 33701, USA
College of Earth, Ocean, and Atmospheric Sciences, Oregon State University, 2651 SW Orchard Ave., Corvallis, OR 97331, USA
Alessandro Tagliabue
Department of Earth, Ocean, and Ecological Sciences, University of Liverpool, 4 Brownlow Street, Liverpool l69 3GP, UK
Maeve C. Lohan
Department of Ocean and Earth Sciences, National Oceanography Centre, University of Southampton, European Way, Southampton SO14 3ZH, UK
Joseph A. Resing
Joint Institute for the Study of Atmosphere and Ocean, University of Washington, 3737 Brooklyn Avenue NE, Seattle, WA 98195, USA
Cooperative Institute for Climate, Ocean, and Ecosystem Studies, University of Washington, 3737 Brooklyn Avenue NE, Seattle, WA 98195, USA
School of Oceanography, University of Washington, 1501 NE Boat Street, Seattle, WA 98195, USA
Randelle M. Bundy
School of Oceanography, University of Washington, 1501 NE Boat Street, Seattle, WA 98195, USA
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Brandon Stephens, Montserrat Roca-Martí, Amy Maas, Vinícius Amaral, Samantha Clevenger, Shawnee Traylor, Claudia Benitez-Nelson, Philip Boyd, Ken Buesseler, Craig Carlson, Nicolas Cassar, Margaret Estapa, Andrea Fassbender, Yibin Huang, Phoebe Lam, Olivier Marchal, Susanne Menden-Deuer, Nicola Paul, Alyson Santoro, David Siegel, and David Nicholson
EGUsphere, https://doi.org/10.5194/egusphere-2024-2251, https://doi.org/10.5194/egusphere-2024-2251, 2024
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The ocean’s mesopelagic zone (MZ) plays a crucial role in the global carbon cycle. This study combines new and previously published measurements of organic carbon supply and demand collected in August 2018 for the MZ in the subarctic North Pacific Ocean. Supply was insufficient to meet demand in August, but supply entering into the MZ in the spring of 2018 could have met the August demand. Results suggest observations over seasonal time scales may help to close MZ carbon budgets.
Weiyi Tang, Bess B. Ward, Michael Beman, Laura Bristow, Darren Clark, Sarah Fawcett, Claudia Frey, François Fripiat, Gerhard J. Herndl, Mhlangabezi Mdutyana, Fabien Paulot, Xuefeng Peng, Alyson E. Santoro, Takuhei Shiozaki, Eva Sintes, Charles Stock, Xin Sun, Xianhui S. Wan, Min N. Xu, and Yao Zhang
Earth Syst. Sci. Data, 15, 5039–5077, https://doi.org/10.5194/essd-15-5039-2023, https://doi.org/10.5194/essd-15-5039-2023, 2023
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Nitrification and nitrifiers play an important role in marine nitrogen and carbon cycles by converting ammonium to nitrite and nitrate. Nitrification could affect microbial community structure, marine productivity, and the production of nitrous oxide – a powerful greenhouse gas. We introduce the newly constructed database of nitrification and nitrifiers in the marine water column and guide future research efforts in field observations and model development of nitrification.
Alastair J. M. Lough, Alessandro Tagliabue, Clément Demasy, Joseph A. Resing, Travis Mellett, Neil J. Wyatt, and Maeve C. Lohan
Biogeosciences, 20, 405–420, https://doi.org/10.5194/bg-20-405-2023, https://doi.org/10.5194/bg-20-405-2023, 2023
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Iron is a key nutrient for ocean primary productivity. Hydrothermal vents are a source of iron to the oceans, but the size of this source is poorly understood. This study examines the variability in iron inputs between hydrothermal vents in different geological settings. The vents studied release different amounts of Fe, resulting in plumes with similar dissolved iron concentrations but different particulate concentrations. This will help to refine modelling of iron-limited ocean productivity.
Emily J. Zakem, Barbara Bayer, Wei Qin, Alyson E. Santoro, Yao Zhang, and Naomi M. Levine
Biogeosciences, 19, 5401–5418, https://doi.org/10.5194/bg-19-5401-2022, https://doi.org/10.5194/bg-19-5401-2022, 2022
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We use a microbial ecosystem model to quantitatively explain the mechanisms controlling observed relative abundances and nitrification rates of ammonia- and nitrite-oxidizing microorganisms in the ocean. We also estimate how much global carbon fixation can be associated with chemoautotrophic nitrification. Our results improve our understanding of the controls on nitrification, laying the groundwork for more accurate predictions in global climate models.
Laurent Bopp, Olivier Aumont, Lester Kwiatkowski, Corentin Clerc, Léonard Dupont, Christian Ethé, Thomas Gorgues, Roland Séférian, and Alessandro Tagliabue
Biogeosciences, 19, 4267–4285, https://doi.org/10.5194/bg-19-4267-2022, https://doi.org/10.5194/bg-19-4267-2022, 2022
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The impact of anthropogenic climate change on the biological production of phytoplankton in the ocean is a cause for concern because its evolution could affect the response of marine ecosystems to climate change. Here, we identify biological N fixation and its response to future climate change as a key process in shaping the future evolution of marine phytoplankton production. Our results show that further study of how this nitrogen fixation responds to environmental change is essential.
Rebecca Chmiel, Nathan Lanning, Allison Laubach, Jong-Mi Lee, Jessica Fitzsimmons, Mariko Hatta, William Jenkins, Phoebe Lam, Matthew McIlvin, Alessandro Tagliabue, and Mak Saito
Biogeosciences, 19, 2365–2395, https://doi.org/10.5194/bg-19-2365-2022, https://doi.org/10.5194/bg-19-2365-2022, 2022
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Dissolved cobalt is present in trace amounts in seawater and is a necessary nutrient for marine microbes. On a transect from the Alaskan coast to Tahiti, we measured seawater concentrations of dissolved cobalt. Here, we describe several interesting features of the Pacific cobalt cycle including cobalt sources along the Alaskan coast and Hawaiian vents, deep-ocean particle formation, cobalt activity in low-oxygen regions, and how our samples compare to a global biogeochemical model’s predictions.
Neil J. Wyatt, Angela Milne, Eric P. Achterberg, Thomas J. Browning, Heather A. Bouman, E. Malcolm S. Woodward, and Maeve C. Lohan
Biogeosciences, 18, 4265–4280, https://doi.org/10.5194/bg-18-4265-2021, https://doi.org/10.5194/bg-18-4265-2021, 2021
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Using data collected during two expeditions to the South Atlantic Ocean, we investigated how the interaction between external sources and biological activity influenced the availability of the trace metals zinc and cobalt. This is important as both metals play essential roles in the metabolism and growth of phytoplankton and thus influence primary productivity of the oceans. We found seasonal changes in both processes that helped explain upper-ocean trace metal cycling.
Yu-Te Hsieh, Walter Geibert, E. Malcolm S. Woodward, Neil J. Wyatt, Maeve C. Lohan, Eric P. Achterberg, and Gideon M. Henderson
Biogeosciences, 18, 1645–1671, https://doi.org/10.5194/bg-18-1645-2021, https://doi.org/10.5194/bg-18-1645-2021, 2021
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The South Atlantic near 40° S is one of the high-productivity and most dynamic nutrient regions in the oceans, but the sources and fluxes of trace elements (TEs) to this region remain unclear. This study investigates seawater Ra-228 and provides important constraints on ocean mixing and dissolved TE fluxes to this region. Vertical mixing is a more important source than aeolian or shelf inputs in this region, but particulate or winter deep-mixing inputs may be required to balance the TE budgets.
Randelle M. Bundy, Alessandro Tagliabue, Nicholas J. Hawco, Peter L. Morton, Benjamin S. Twining, Mariko Hatta, Abigail E. Noble, Mattias R. Cape, Seth G. John, Jay T. Cullen, and Mak A. Saito
Biogeosciences, 17, 4745–4767, https://doi.org/10.5194/bg-17-4745-2020, https://doi.org/10.5194/bg-17-4745-2020, 2020
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Cobalt (Co) is an essential nutrient for ocean microbes and is scarce in most areas of the ocean. This study measured Co concentrations in the Arctic Ocean for the first time and found that Co levels are extremely high in the surface waters of the Canadian Arctic. Although the Co primarily originates from the shelf, the high concentrations persist throughout the central Arctic. Co in the Arctic appears to be increasing over time and might be a source of Co to the North Atlantic.
Lester Kwiatkowski, Olivier Torres, Laurent Bopp, Olivier Aumont, Matthew Chamberlain, James R. Christian, John P. Dunne, Marion Gehlen, Tatiana Ilyina, Jasmin G. John, Andrew Lenton, Hongmei Li, Nicole S. Lovenduski, James C. Orr, Julien Palmieri, Yeray Santana-Falcón, Jörg Schwinger, Roland Séférian, Charles A. Stock, Alessandro Tagliabue, Yohei Takano, Jerry Tjiputra, Katsuya Toyama, Hiroyuki Tsujino, Michio Watanabe, Akitomo Yamamoto, Andrew Yool, and Tilo Ziehn
Biogeosciences, 17, 3439–3470, https://doi.org/10.5194/bg-17-3439-2020, https://doi.org/10.5194/bg-17-3439-2020, 2020
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We assess 21st century projections of marine biogeochemistry in the CMIP6 Earth system models. These models represent the most up-to-date understanding of climate change. The models generally project greater surface ocean warming, acidification, subsurface deoxygenation, and euphotic nitrate reductions but lesser primary production declines than the previous generation of models. This has major implications for the impact of anthropogenic climate change on marine ecosystems.
Noelle A. Held, Eric A. Webb, Matthew M. McIlvin, David A. Hutchins, Natalie R. Cohen, Dawn M. Moran, Korinna Kunde, Maeve C. Lohan, Claire Mahaffey, E. Malcolm S. Woodward, and Mak A. Saito
Biogeosciences, 17, 2537–2551, https://doi.org/10.5194/bg-17-2537-2020, https://doi.org/10.5194/bg-17-2537-2020, 2020
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Trichodesmium is a globally important marine nitrogen fixer that stimulates primary production in the surface ocean. We surveyed metaproteomes of Trichodesmium populations across the North Atlantic and other oceans, and we found that they experience simultaneous phosphate and iron stress because of the biophysical limits of nutrient uptake. Importantly, nitrogenase was most abundant during co-stress, indicating the potential importance of this phenotype to global nitrogen and carbon cycling.
Samuel T. Wilson, Hermann W. Bange, Damian L. Arévalo-Martínez, Jonathan Barnes, Alberto V. Borges, Ian Brown, John L. Bullister, Macarena Burgos, David W. Capelle, Michael Casso, Mercedes de la Paz, Laura Farías, Lindsay Fenwick, Sara Ferrón, Gerardo Garcia, Michael Glockzin, David M. Karl, Annette Kock, Sarah Laperriere, Cliff S. Law, Cara C. Manning, Andrew Marriner, Jukka-Pekka Myllykangas, John W. Pohlman, Andrew P. Rees, Alyson E. Santoro, Philippe D. Tortell, Robert C. Upstill-Goddard, David P. Wisegarver, Gui-Ling Zhang, and Gregor Rehder
Biogeosciences, 15, 5891–5907, https://doi.org/10.5194/bg-15-5891-2018, https://doi.org/10.5194/bg-15-5891-2018, 2018
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To determine the variability between independent measurements of dissolved methane and nitrous oxide, seawater samples were analyzed by multiple laboratories. The results revealed the influences of the different parts of the analytical process, from the initial sample collection to the calculation of the final concentrations. Recommendations are made to improve dissolved methane and nitrous oxide measurements to help preclude future analytical discrepancies between laboratories.
James C. Orr, Raymond G. Najjar, Olivier Aumont, Laurent Bopp, John L. Bullister, Gokhan Danabasoglu, Scott C. Doney, John P. Dunne, Jean-Claude Dutay, Heather Graven, Stephen M. Griffies, Jasmin G. John, Fortunat Joos, Ingeborg Levin, Keith Lindsay, Richard J. Matear, Galen A. McKinley, Anne Mouchet, Andreas Oschlies, Anastasia Romanou, Reiner Schlitzer, Alessandro Tagliabue, Toste Tanhua, and Andrew Yool
Geosci. Model Dev., 10, 2169–2199, https://doi.org/10.5194/gmd-10-2169-2017, https://doi.org/10.5194/gmd-10-2169-2017, 2017
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The Ocean Model Intercomparison Project (OMIP) is a model comparison effort under Phase 6 of the Coupled Model Intercomparison Project (CMIP6). Its physical component is described elsewhere in this special issue. Here we describe its ocean biogeochemical component (OMIP-BGC), detailing simulation protocols and analysis diagnostics. Simulations focus on ocean carbon, other biogeochemical tracers, air-sea exchange of CO2 and related gases, and chemical tracers used to evaluate modeled circulation.
Marco van Hulten, Rob Middag, Jean-Claude Dutay, Hein de Baar, Matthieu Roy-Barman, Marion Gehlen, Alessandro Tagliabue, and Andreas Sterl
Biogeosciences, 14, 1123–1152, https://doi.org/10.5194/bg-14-1123-2017, https://doi.org/10.5194/bg-14-1123-2017, 2017
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We ran a global ocean model to understand manganese (Mn), a biologically essential element. Our model shows that (i) in the deep ocean, dissolved [Mn] is mostly homogeneous ~0.10—0.15 nM. The model reproduces this with a threshold on MnO2 of 25 pM, suggesting a minimal particle concentration is needed before aggregation and removal become efficient.
(ii) The observed distinct hydrothermal signals are produced by assuming both a strong source and a strong removal of Mn near hydrothermal vents.
Nicholas J. Hawco, Daniel C. Ohnemus, Joseph A. Resing, Benjamin S. Twining, and Mak A. Saito
Biogeosciences, 13, 5697–5717, https://doi.org/10.5194/bg-13-5697-2016, https://doi.org/10.5194/bg-13-5697-2016, 2016
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Cobalt is a scarce nutrient required by phytoplankton. We report more than 800 measurements of dissolved cobalt in the South Pacific Ocean, which show high cobalt concentrations in anoxic subsurface waters offshore of Peru. Coastal cobalt sources may be stronger under low oxygen and could fluctuate as climate change is expected to alter the extent of these low-oxygen regions.
O. Aumont, C. Ethé, A. Tagliabue, L. Bopp, and M. Gehlen
Geosci. Model Dev., 8, 2465–2513, https://doi.org/10.5194/gmd-8-2465-2015, https://doi.org/10.5194/gmd-8-2465-2015, 2015
J. Martinez-Rey, L. Bopp, M. Gehlen, A. Tagliabue, and N. Gruber
Biogeosciences, 12, 4133–4148, https://doi.org/10.5194/bg-12-4133-2015, https://doi.org/10.5194/bg-12-4133-2015, 2015
M. M. P. van Hulten, A. Sterl, R. Middag, H. J. W. de Baar, M. Gehlen, J.-C. Dutay, and A. Tagliabue
Biogeosciences, 11, 3757–3779, https://doi.org/10.5194/bg-11-3757-2014, https://doi.org/10.5194/bg-11-3757-2014, 2014
W. R. Joubert, S. Swart, A. Tagliabue, S. J. Thomalla, and P. M. S. Monteiro
Biogeosciences Discuss., https://doi.org/10.5194/bgd-11-4335-2014, https://doi.org/10.5194/bgd-11-4335-2014, 2014
Revised manuscript not accepted
A. E. Santoro, C. M. Sakamoto, J. M. Smith, J. N. Plant, A. L. Gehman, A. Z. Worden, K. S. Johnson, C. A. Francis, and K. L. Casciotti
Biogeosciences, 10, 7395–7410, https://doi.org/10.5194/bg-10-7395-2013, https://doi.org/10.5194/bg-10-7395-2013, 2013
A. Schmittner, N. Gruber, A. C. Mix, R. M. Key, A. Tagliabue, and T. K. Westberry
Biogeosciences, 10, 5793–5816, https://doi.org/10.5194/bg-10-5793-2013, https://doi.org/10.5194/bg-10-5793-2013, 2013
Related subject area
Biogeochemistry: Organic Biogeochemistry
Ocean liming effects on dissolved organic matter dynamics
Results from a multi-laboratory ocean metaproteomic intercomparison: effects of LC-MS acquisition and data analysis procedures
Controls on the composition of hydroxylated isoprenoidal glycerol dialkyl glycerol tetraethers (isoGDGTs) in cultivated ammonia-oxidizing Thaumarchaeota
Reviews and syntheses: Opportunities for robust use of peak intensities from high-resolution mass spectrometry in organic matter studies
Elemental stoichiometry of particulate organic matter across the Atlantic Ocean
Lipid remodeling in phytoplankton exposed to multi-environmental drivers in a mesocosm experiment
Molecular-level carbon traits of fine roots: unveiling adaptation and decomposition under flooded conditions
Environmental controls on the distribution of brGDGTs and brGMGTs across the Seine River basin (NW France): implications for bacterial tetraethers as a proxy for riverine runoff
Latitudinal distribution of biomarkers across the western Arctic Ocean and the Bering Sea: an approach to assess sympagic and pelagic algal production
Sinking fate and carbon export of zooplankton fecal pellets: insights from time-series sediment trap observations in the northern South China Sea
Low cobalt inventories in the Amundsen and Ross seas driven by high demand for labile cobalt uptake among native phytoplankton communities
Methods to characterize type, relevance, and interactions of organic matter and microorganisms in fluids along the flow path of a geothermal facility
Potential bioavailability of representative pyrogenic organic matter compounds in comparison to natural dissolved organic matter pools
Distributions of bacteriohopanepolyols in lakes and coastal lagoons of the Azores Archipelago
Recently fixed carbon fuels microbial activity several meters below the soil surface
Environmental and hydrologic controls on sediment and organic carbon export from a subalpine catchment: insights from a time series
Climate and geology overwrite land use effects on soil organic nitrogen cycling on a continental scale
Compositions of dissolved organic matter in the ice-covered waters above the Aurora hydrothermal vent system, Gakkel Ridge, Arctic Ocean
Organic matter characteristics of a rapidly eroding permafrost cliff in NE Siberia (Lena Delta, Laptev Sea region)
Microbial labilization and diversification of pyrogenic dissolved organic matter
Bacterial and eukaryotic intact polar lipids point to in situ production as a key source of labile organic matter in hadal surface sediment of the Atacama Trench
What can we learn from amino acids about oceanic organic matter cycling and degradation?
Bacteriohopanetetrol-x: constraining its application as a lipid biomarker for marine anammox using the water column oxygen gradient of the Benguela upwelling system
Active and passive fluxes of carbon, nitrogen, and phosphorus in the northern South China Sea
Cyanobacteria net community production in the Baltic Sea as inferred from profiling pCO2 measurements
Reviews and syntheses: Heterotrophic fixation of inorganic carbon – significant but invisible flux in environmental carbon cycling
Revised fractional abundances and warm-season temperatures substantially improve brGDGT calibrations in lake sediments
Archaeal intact polar lipids in polar waters: a comparison between the Amundsen and Scotia seas
Reproducible determination of dissolved organic matter photosensitivity
Technical note: Uncovering the influence of methodological variations on the extractability of iron-bound organic carbon
Anthropocene climate warming enhances autochthonous carbon cycling in an upland Arctic lake, Disko Island, West Greenland
Novel hydrocarbon-utilizing soil mycobacteria synthesize unique mycocerosic acids at a Sicilian everlasting fire
Alkenone isotopes show evidence of active carbon concentrating mechanisms in coccolithophores as aqueous carbon dioxide concentrations fall below 7 µmol L−1
Seasonal variability and sources of in situ brGDGT production in a permanently stratified African crater lake
Sediment release of dissolved organic matter to the oxygen minimum zone off Peru
Better molecular preservation of organic matter in an oxic than in a sulfidic depositional environment: evidence from Thalassiphora pelagica (Dinoflagellata, Eocene) cysts
Assessing branched tetraether lipids as tracers of soil organic carbon transport through the Carminowe Creek catchment (southwest England)
The nonconservative distribution pattern of organic matter in the Rajang, a tropical river with peatland in its estuary
Predominance of hexamethylated 6-methyl branched glycerol dialkyl glycerol tetraethers in the Mariana Trench: source and environmental implication
High-pH and anoxic conditions during soil organic matter extraction increases its electron-exchange capacity and ability to stimulate microbial Fe(III) reduction by electron shuttling
Sterol preservation in hypersaline microbial mats
Structural elucidation and environmental distributions of butanetriol and pentanetriol dialkyl glycerol tetraethers (BDGTs and PDGTs)
Distribution and degradation of terrestrial organic matter in the sediments of peat-draining rivers, Sarawak, Malaysian Borneo
Validation of carbon isotope fractionation in algal lipids as a pCO2 proxy using a natural CO2 seep (Shikine Island, Japan)
Composition and cycling of dissolved organic matter from tropical peatlands of coastal Sarawak, Borneo, revealed by fluorescence spectroscopy and parallel factor analysis
Latitudinal variations in δ30Si and δ15N signatures along the Peruvian shelf: quantifying the effects of nutrient utilization versus denitrification over the past 600 years
Diapycnal dissolved organic matter supply into the upper Peruvian oxycline
Composition and vertical flux of particulate organic matter to the oxygen minimum zone of the central Baltic Sea: impact of a sporadic North Sea inflow
Main drivers of transparent exopolymer particle distribution across the surface Atlantic Ocean
Biochemical and structural controls on the decomposition dynamics of boreal upland forest moss tissues
Chiara Santinelli, Silvia Valsecchi, Simona Retelletti Brogi, Giancarlo Bachi, Giovanni Checcucci, Mirco Guerrazzi, Elisa Camatti, Stefano Caserini, Arianna Azzellino, and Daniela Basso
Biogeosciences, 21, 5131–5141, https://doi.org/10.5194/bg-21-5131-2024, https://doi.org/10.5194/bg-21-5131-2024, 2024
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Ocean liming is a technique proposed to mitigate ocean acidification. Every action we take has an impact on the environment and the effects on the invisible world are often overlooked. With this study, we show that lime addition impacts the dynamics of dissolved organic matter, one of the largest reservoirs of carbon on Earth, representing the main source of energy for marine microbes. Further studies to assess the impacts on marine ecosystems are therefore crucial before taking any action.
Mak A. Saito, Jaclyn K. Saunders, Matthew R. McIlvin, Erin M. Bertrand, John A. Breier, Margaret Mars Brisbin, Sophie M. Colston, Jaimee R. Compton, Tim J. Griffin, W. Judson Hervey, Robert L. Hettich, Pratik D. Jagtap, Michael Janech, Rod Johnson, Rick Keil, Hugo Kleikamp, Dagmar Leary, Lennart Martens, J. Scott P. McCain, Eli Moore, Subina Mehta, Dawn M. Moran, Jaqui Neibauer, Benjamin A. Neely, Michael V. Jakuba, Jim Johnson, Megan Duffy, Gerhard J. Herndl, Richard Giannone, Ryan Mueller, Brook L. Nunn, Martin Pabst, Samantha Peters, Andrew Rajczewski, Elden Rowland, Brian Searle, Tim Van Den Bossche, Gary J. Vora, Jacob R. Waldbauer, Haiyan Zheng, and Zihao Zhao
Biogeosciences, 21, 4889–4908, https://doi.org/10.5194/bg-21-4889-2024, https://doi.org/10.5194/bg-21-4889-2024, 2024
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The ability to assess the functional capabilities of microbes in the environment is of increasing interest. Metaproteomics, the ability to measure proteins across microbial populations, has been increasing in capability and popularity in recent years. Here, an international team of scientists conducted an intercomparison study using samples collected from the North Atlantic Ocean and observed consistency in the peptides and proteins identified, their functions, and their taxonomic origins.
Devika Varma, Laura Villanueva, Nicole J. Bale, Pierre Offre, Gert-Jan Reichart, and Stefan Schouten
Biogeosciences, 21, 4875–4888, https://doi.org/10.5194/bg-21-4875-2024, https://doi.org/10.5194/bg-21-4875-2024, 2024
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Archaeal hydroxylated tetraether lipids are increasingly used as temperature indicators in marine settings, but the factors influencing their distribution are still unclear. Analyzing membrane lipids of two thaumarchaeotal strains showed that the growth phase of the cultures does not affect the lipid distribution, but growth temperature profoundly affects the degree of cyclization of these lipids. Also, the abundance of these lipids is species-specific and is not influenced by temperature.
William Kew, Allison Myers-Pigg, Christine H. Chang, Sean M. Colby, Josie Eder, Malak M. Tfaily, Jeffrey Hawkes, Rosalie K. Chu, and James C. Stegen
Biogeosciences, 21, 4665–4679, https://doi.org/10.5194/bg-21-4665-2024, https://doi.org/10.5194/bg-21-4665-2024, 2024
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Natural organic matter (NOM) is often studied via Fourier transform mass spectrometry (FTMS), which identifies organic molecules as mass spectra peaks. The intensity of peaks is data that is often discarded due to technical concerns. We review the theory behind these concerns and show they are supported empirically. However, simulations show that ecological analyses of NOM data that include FTMS peak intensities are often valid. This opens a path for robust use of FTMS peak intensities for NOM.
Adam J. Fagan, Tatsuro Tanioka, Alyse A. Larkin, Jenna A. Lee, Nathan S. Garcia, and Adam C. Martiny
Biogeosciences, 21, 4239–4250, https://doi.org/10.5194/bg-21-4239-2024, https://doi.org/10.5194/bg-21-4239-2024, 2024
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Climate change is anticipated to influence the biological pump by altering phytoplankton nutrient distribution. In our research, we collected measurements of particulate matter concentrations during two oceanographic field studies. We observed systematic variations in organic matter concentrations and ratios across the Atlantic Ocean. From statistical modeling, we determined that these variations are associated with differences in the availability of essential nutrients for phytoplankton growth.
Sebastian I. Cantarero, Edgart Flores, Harry Allbrook, Paulina Aguayo, Cristian A. Vargas, John E. Tamanaha, J. Bentley C. Scholz, Lennart T. Bach, Carolin R. Löscher, Ulf Riebesell, Balaji Rajagopalan, Nadia Dildar, and Julio Sepúlveda
Biogeosciences, 21, 3927–3958, https://doi.org/10.5194/bg-21-3927-2024, https://doi.org/10.5194/bg-21-3927-2024, 2024
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Our study explores lipid remodeling in response to environmental stress, specifically how cell membrane chemistry changes. We focus on intact polar lipids in a phytoplankton community exposed to diverse stressors in a mesocosm experiment. The observed remodeling indicates acyl chain recycling for energy storage in intact polar lipids during stress, reallocating resources based on varying growth conditions. This understanding is essential to grasp the system's impact on cellular pools.
Mengke Wang, Peng Zhang, Huishan Li, Guisen Deng, Deliang Kong, Sifang Kong, and Junjian Wang
Biogeosciences, 21, 2691–2704, https://doi.org/10.5194/bg-21-2691-2024, https://doi.org/10.5194/bg-21-2691-2024, 2024
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We developed and applied complementary analyses to characterize molecular-level carbon traits for water-grown and soil-grown fine roots. The adaptive strategy of developing more labile carbon in water-grown roots accelerated root decomposition and counteracted the decelerated effects of anoxia on decomposition, highlighting an indirect effect of environmental change on belowground carbon cycling.
Zhe-Xuan Zhang, Edith Parlanti, Christelle Anquetil, Jérôme Morelle, Anniet M. Laverman, Alexandre Thibault, Elisa Bou, and Arnaud Huguet
Biogeosciences, 21, 2227–2252, https://doi.org/10.5194/bg-21-2227-2024, https://doi.org/10.5194/bg-21-2227-2024, 2024
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Bacterial tetraethers have important implications for palaeoclimate reconstruction. However, fundamental understanding of how these lipids are transformed from land to sea and which environmental factors influence their distributions is lacking. Here, we investigate the sources of brGDGTs and brGMGTs and the factors controlling their distributions in a large dataset (n=237). We propose a novel proxy (RIX) to trace riverine runoff, which is applicable in modern systems and in paleorecord.
Youcheng Bai, Marie-Alexandrine Sicre, Jian Ren, Vincent Klein, Haiyan Jin, and Jianfang Chen
Biogeosciences, 21, 689–709, https://doi.org/10.5194/bg-21-689-2024, https://doi.org/10.5194/bg-21-689-2024, 2024
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Algal biomarkers were used to assess sea ice and pelagic algal production across the western Arctic Ocean with changing sea-ice conditions. They show three distinct areas along with a marked latitudinal gradient of sea ice over pelagic algal production in surface sediments that are reflected by the H-Print index. Our data also show that efficient grazing consumption accounted for the dramatic decrease of diatom-derived biomarkers in sediments compared to that of particulate matter.
Hanxiao Wang, Zhifei Liu, Jiaying Li, Baozhi Lin, Yulong Zhao, Xiaodong Zhang, Junyuan Cao, Jingwen Zhang, Hongzhe Song, and Wenzhuo Wang
Biogeosciences, 20, 5109–5123, https://doi.org/10.5194/bg-20-5109-2023, https://doi.org/10.5194/bg-20-5109-2023, 2023
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The sinking of zooplankton fecal pellets is a key process in the marine biological carbon pump. This study presents carbon export of four shapes of fecal pellets from two time-series sediment traps in the South China Sea. The results show that the sinking fate of fecal pellets is regulated by marine primary productivity, deep-dwelling zooplankton community, and deep-sea currents in the tropical marginal sea, thus providing a new perspective for exploring the carbon cycle in the world ocean.
Rebecca J. Chmiel, Riss M. Kell, Deepa Rao, Dawn M. Moran, Giacomo R. DiTullio, and Mak A. Saito
Biogeosciences, 20, 3997–4027, https://doi.org/10.5194/bg-20-3997-2023, https://doi.org/10.5194/bg-20-3997-2023, 2023
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Cobalt is an important micronutrient for plankton, yet it is often scarce throughout the oceans. A 2017/2018 expedition to coastal Antarctica, including regions of the Amundsen Sea and the Ross Sea, discovered lower concentrations of cobalt compared to two past expeditions in 2005 and 2006, particularly for the type of cobalt preferred as a nutrient by phytoplankton. This loss may be due to changing inputs of other nutrients, causing higher uptake of cobalt by plankton over the last decade.
Alessio Leins, Danaé Bregnard, Andrea Vieth-Hillebrand, Stefanie Poetz, Florian Eichinger, Guillaume Cailleau, Pilar Junier, and Simona Regenspurg
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-159, https://doi.org/10.5194/bg-2023-159, 2023
Revised manuscript accepted for BG
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Organic matter and microbial fluid analyses are rarely taken into account in the geothermal industry and research. However, they can have a significant effect on the efficiency of geothermal power production. We discovered a high variety in organic compound composition in our samples and were able to differentiate it with regard to various sources (e.g. artificial and biogenic). Furthermore, the microbial diversity undergoes significant changes within the flow path of a geothermal power plant.
Emily B. Graham, Hyun-Seob Song, Samantha Grieger, Vanessa A. Garayburu-Caruso, James C. Stegen, Kevin D. Bladon, and Allison N. Myers-Pigg
Biogeosciences, 20, 3449–3457, https://doi.org/10.5194/bg-20-3449-2023, https://doi.org/10.5194/bg-20-3449-2023, 2023
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Intensifying wildfires are increasing pyrogenic organic matter (PyOM) production and its impact on water quality. Recent work indicates that PyOM may have a greater impact on aquatic biogeochemistry than previously assumed, driven by higher bioavailability. We provide a full assessment of the potential bioavailability of PyOM across its chemical spectrum. We indicate that PyOM can be actively transformed within the river corridor and, therefore, may be a growing source of riverine C emissions.
Nora Richter, Ellen C. Hopmans, Danica Mitrović, Pedro M. Raposeiro, Vítor Gonçalves, Ana C. Costa, Linda A. Amaral-Zettler, Laura Villanueva, and Darci Rush
Biogeosciences, 20, 2065–2098, https://doi.org/10.5194/bg-20-2065-2023, https://doi.org/10.5194/bg-20-2065-2023, 2023
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Bacteriohopanepolyols (BHPs) are a diverse class of lipids produced by bacteria across a wide range of environments. This study characterizes the diversity of BHPs in lakes and coastal lagoons in the Azores Archipelago, as well as a co-culture enriched for methanotrophs. We highlight the potential of BHPs as taxonomic markers for bacteria associated with certain ecological niches, which can be preserved in sedimentary records.
Andrea Scheibe, Carlos A. Sierra, and Marie Spohn
Biogeosciences, 20, 827–838, https://doi.org/10.5194/bg-20-827-2023, https://doi.org/10.5194/bg-20-827-2023, 2023
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We explored carbon cycling in soils in three climate zones in Chile down to a depth of 6 m, using carbon isotopes. Our results show that microbial activity several meters below the soil surface is mostly fueled by recently fixed carbon and that strong decomposition of soil organic matter only occurs in the upper decimeters of the soils. The study shows that different layers of the critical zone are tightly connected and that processes in the deep soil depend on recently fixed carbon.
Melissa Sophia Schwab, Hannah Gies, Chantal Valérie Freymond, Maarten Lupker, Negar Haghipour, and Timothy Ian Eglinton
Biogeosciences, 19, 5591–5616, https://doi.org/10.5194/bg-19-5591-2022, https://doi.org/10.5194/bg-19-5591-2022, 2022
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The majority of river studies focus on headwater or floodplain systems, while often neglecting intermediate river segments. Our study on the subalpine Sihl River bridges the gap between streams and lowlands and demonstrates that moderately steep river segments are areas of significant instream alterations, modulating the export of organic carbon over short distances.
Lisa Noll, Shasha Zhang, Qing Zheng, Yuntao Hu, Florian Hofhansl, and Wolfgang Wanek
Biogeosciences, 19, 5419–5433, https://doi.org/10.5194/bg-19-5419-2022, https://doi.org/10.5194/bg-19-5419-2022, 2022
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Cleavage of proteins to smaller nitrogen compounds allows microorganisms and plants to exploit the largest nitrogen reservoir in soils and is considered the bottleneck in soil organic nitrogen cycling. Results from soils covering a European transect show that protein turnover is constrained by soil geochemistry, shifts in climate and associated alterations in soil weathering and should be considered as a driver of soil nitrogen availability with repercussions on carbon cycle processes.
Muhammed Fatih Sert, Helge Niemann, Eoghan P. Reeves, Mats A. Granskog, Kevin P. Hand, Timo Kekäläinen, Janne Jänis, Pamela E. Rossel, Bénédicte Ferré, Anna Silyakova, and Friederike Gründger
Biogeosciences, 19, 2101–2120, https://doi.org/10.5194/bg-19-2101-2022, https://doi.org/10.5194/bg-19-2101-2022, 2022
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We investigate organic matter composition in the Arctic Ocean water column. We collected seawater samples from sea ice to deep waters at six vertical profiles near an active hydrothermal vent and its plume. In comparison to seawater, we found that the organic matter in waters directly affected by the hydrothermal plume had different chemical composition. We suggest that hydrothermal processes may influence the organic matter distribution in the deep ocean.
Charlotte Haugk, Loeka L. Jongejans, Kai Mangelsdorf, Matthias Fuchs, Olga Ogneva, Juri Palmtag, Gesine Mollenhauer, Paul J. Mann, P. Paul Overduin, Guido Grosse, Tina Sanders, Robyn E. Tuerena, Lutz Schirrmeister, Sebastian Wetterich, Alexander Kizyakov, Cornelia Karger, and Jens Strauss
Biogeosciences, 19, 2079–2094, https://doi.org/10.5194/bg-19-2079-2022, https://doi.org/10.5194/bg-19-2079-2022, 2022
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Buried animal and plant remains (carbon) from the last ice age were freeze-locked in permafrost. At an extremely fast eroding permafrost cliff in the Lena Delta (Siberia), we found this formerly frozen carbon well preserved. Our results show that ongoing degradation releases substantial amounts of this carbon, making it available for future carbon emissions. This mobilisation at the studied cliff and also similarly eroding sites bear the potential to affect rivers and oceans negatively.
Aleksandar I. Goranov, Andrew S. Wozniak, Kyle W. Bostick, Andrew R. Zimmerman, Siddhartha Mitra, and Patrick G. Hatcher
Biogeosciences, 19, 1491–1514, https://doi.org/10.5194/bg-19-1491-2022, https://doi.org/10.5194/bg-19-1491-2022, 2022
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Wildfire-derived molecules are ubiquitous in the aquatic environment, but their biological fate remains understudied. We have evaluated the compositional changes that occur to wildfire-derived molecules after incubation with soil microbes. We observe a significant degradation but also a production of numerous new labile molecules. Our results indicate that wildfire-derived molecules can be broken down and the carbon and nitrogen therein can be incorporated into microbial food webs.
Edgart Flores, Sebastian I. Cantarero, Paula Ruiz-Fernández, Nadia Dildar, Matthias Zabel, Osvaldo Ulloa, and Julio Sepúlveda
Biogeosciences, 19, 1395–1420, https://doi.org/10.5194/bg-19-1395-2022, https://doi.org/10.5194/bg-19-1395-2022, 2022
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In this study, we investigate the chemical diversity and abundance of microbial lipids as markers of organic matter sources in the deepest points of the Atacama Trench sediments and compare them to similar lipid stocks in shallower surface sediments and in the overlying water column. We evaluate possible organic matter provenance and some potential chemical adaptations of the in situ microbial community to the extreme conditions of high hydrostatic pressure in hadal realm.
Birgit Gaye, Niko Lahajnar, Natalie Harms, Sophie Anna Luise Paul, Tim Rixen, and Kay-Christian Emeis
Biogeosciences, 19, 807–830, https://doi.org/10.5194/bg-19-807-2022, https://doi.org/10.5194/bg-19-807-2022, 2022
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Amino acids were analyzed in a large number of samples of particulate and dissolved organic matter from coastal regions and the open ocean. A statistical analysis produced two new biogeochemical indicators. An indicator of sinking particle and sediment degradation (SDI) traces the degradation of organic matter from the surface waters into the sediments. A second indicator shows the residence time of suspended matter in the ocean (RTI).
Zoë R. van Kemenade, Laura Villanueva, Ellen C. Hopmans, Peter Kraal, Harry J. Witte, Jaap S. Sinninghe Damsté, and Darci Rush
Biogeosciences, 19, 201–221, https://doi.org/10.5194/bg-19-201-2022, https://doi.org/10.5194/bg-19-201-2022, 2022
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Anaerobic ammonium oxidation (anammox) is an important nitrogen-removal process in the ocean. We assess the distribution of bacteriohopanetetrol-x (BHT-x), used to trace past anammox, along a redox gradient in the water column of the Benguela upwelling system. BHT-x / BHT ratios of >0.18 correspond to the presence of living anammox bacteria and oxygen levels <50 μmol L−1. This allows for a more robust application of BHT-x to trace past marine anammox and deoxygenation in dynamic marine systems.
Jia-Jang Hung, Ching-Han Tung, Zong-Ying Lin, Yuh-ling Lee Chen, Shao-Hung Peng, Yen-Huei Lin, and Li-Shan Tsai
Biogeosciences, 18, 5141–5162, https://doi.org/10.5194/bg-18-5141-2021, https://doi.org/10.5194/bg-18-5141-2021, 2021
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We report measured active and passive fluxes and their controlling mechanisms in the northern South China Sea (NSCS). The total fluxes were higher than most reports in open oceans, indicating the significance of NSCS in atmospheric CO2 uptake and in storing that CO2 in the ocean’s interior. Winter cooling and extreme events enhanced nutrient availability and elevated fluxes. Global warming may have profound impacts on reducing ocean’s uptake and storage of CO2 in subtropical–tropical oceans.
Jens Daniel Müller, Bernd Schneider, Ulf Gräwe, Peer Fietzek, Marcus Bo Wallin, Anna Rutgersson, Norbert Wasmund, Siegfried Krüger, and Gregor Rehder
Biogeosciences, 18, 4889–4917, https://doi.org/10.5194/bg-18-4889-2021, https://doi.org/10.5194/bg-18-4889-2021, 2021
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Based on profiling pCO2 measurements from a field campaign, we quantify the biomass production of a cyanobacteria bloom in the Baltic Sea, the export of which would foster deep water deoxygenation. We further demonstrate how this biomass production can be accurately reconstructed from long-term surface measurements made on cargo vessels in combination with modelled temperature profiles. This approach enables a better understanding of a severe concern for the Baltic’s good environmental status.
Alexander Braun, Marina Spona-Friedl, Maria Avramov, Martin Elsner, Federico Baltar, Thomas Reinthaler, Gerhard J. Herndl, and Christian Griebler
Biogeosciences, 18, 3689–3700, https://doi.org/10.5194/bg-18-3689-2021, https://doi.org/10.5194/bg-18-3689-2021, 2021
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It is known that CO2 fixation by photoautotrophic organisms is the major sink from the atmosphere. While biologists are aware that CO2 fixation also occurs in heterotrophic organisms, this route of inorganic carbon, and its quantitative role, is hardly recognized in biogeochemistry. We demonstrate that a considerable amount of CO2 is fixed annually through anaplerotic reactions in heterotrophic organisms, and a significant quantity of inorganic carbon is temporally sequestered in biomass.
Jonathan H. Raberg, David J. Harning, Sarah E. Crump, Greg de Wet, Aria Blumm, Sebastian Kopf, Áslaug Geirsdóttir, Gifford H. Miller, and Julio Sepúlveda
Biogeosciences, 18, 3579–3603, https://doi.org/10.5194/bg-18-3579-2021, https://doi.org/10.5194/bg-18-3579-2021, 2021
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BrGDGT lipids are a proxy for temperature in lake sediments, but other parameters like pH can influence them, and seasonality can affect the temperatures they record. We find a warm-season bias at 43 new high-latitude sites. We also present a new method that deconvolves the effects of temperature, pH, and conductivity and generate global calibrations for these variables. Our study provides new paleoclimate tools, insight into brGDGTs at the biochemical level, and a new method for future study.
Charlotte L. Spencer-Jones, Erin L. McClymont, Nicole J. Bale, Ellen C. Hopmans, Stefan Schouten, Juliane Müller, E. Povl Abrahamsen, Claire Allen, Torsten Bickert, Claus-Dieter Hillenbrand, Elaine Mawbey, Victoria Peck, Aleksandra Svalova, and James A. Smith
Biogeosciences, 18, 3485–3504, https://doi.org/10.5194/bg-18-3485-2021, https://doi.org/10.5194/bg-18-3485-2021, 2021
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Long-term ocean temperature records are needed to fully understand the impact of West Antarctic Ice Sheet collapse. Glycerol dialkyl glycerol tetraethers (GDGTs) are powerful tools for reconstructing ocean temperature but can be difficult to apply to the Southern Ocean. Our results show active GDGT synthesis in relatively warm depths of the ocean. This research improves the application of GDGT palaeoceanographic proxies in the Southern Ocean.
Alec W. Armstrong, Leanne Powers, and Michael Gonsior
Biogeosciences, 18, 3367–3390, https://doi.org/10.5194/bg-18-3367-2021, https://doi.org/10.5194/bg-18-3367-2021, 2021
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Living things decay into organic matter, which can dissolve into water (like tea brewing). Tea receives its color by absorbing light. Similarly, this material absorbs light, which can then cause chemical reactions that change it. By measuring changes in these optical properties, we found that materials from some places are more sensitive to light than others. Comparing sensitivity to light helps us understand where these materials come from and what happens as they move through water.
Ben J. Fisher, Johan C. Faust, Oliver W. Moore, Caroline L. Peacock, and Christian März
Biogeosciences, 18, 3409–3419, https://doi.org/10.5194/bg-18-3409-2021, https://doi.org/10.5194/bg-18-3409-2021, 2021
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Organic carbon can be protected from microbial degradation in marine sediments through association with iron minerals on 1000-year timescales. Despite the importance of this carbon sink, our spatial and temporal understanding of iron-bound organic carbon interactions globally is poor. Here we show that caution must be applied when comparing quantification of iron-bound organic carbon extracted by different methods as the extraction strength and method specificity can be highly variable.
Mark A. Stevenson, Suzanne McGowan, Emma J. Pearson, George E. A. Swann, Melanie J. Leng, Vivienne J. Jones, Joseph J. Bailey, Xianyu Huang, and Erika Whiteford
Biogeosciences, 18, 2465–2485, https://doi.org/10.5194/bg-18-2465-2021, https://doi.org/10.5194/bg-18-2465-2021, 2021
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We link detailed stable isotope and biomarker analyses from the catchments of three Arctic upland lakes on Disko Island (West Greenland) to a recent dated sediment core to understand how carbon cycling has changed over the past ~500 years. We find that the carbon deposited in sediments in these upland lakes is predominately sourced from in-lake production due to the catchment's limited terrestrial vegetation and elevation and that recent increases in algal production link with climate change.
Nadine T. Smit, Laura Villanueva, Darci Rush, Fausto Grassa, Caitlyn R. Witkowski, Mira Holzheimer, Adriaan J. Minnaard, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 18, 1463–1479, https://doi.org/10.5194/bg-18-1463-2021, https://doi.org/10.5194/bg-18-1463-2021, 2021
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Soils from an everlasting fire (gas seep) in Sicily, Italy, reveal high relative abundances of novel uncultivated mycobacteria and unique 13C-depleted mycocerosic acids (multi-methyl branched fatty acids) close to the main gas seep. Our results imply that mycocerosic acids in combination with their depleted δ13C values offer a new biomarker tool to study the role of soil mycobacteria as hydrocarbon consumers in the modern and past global carbon cycle.
Marcus P. S. Badger
Biogeosciences, 18, 1149–1160, https://doi.org/10.5194/bg-18-1149-2021, https://doi.org/10.5194/bg-18-1149-2021, 2021
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Reconstructing ancient atmospheric CO2 is an important aim of palaeoclimate science in order to understand the Earth's climate system. One method, the alkenone proxy based on molecular fossils of coccolithophores, has been recently shown to be ineffective at low-to-moderate CO2 levels. In this paper I show that this is likely due to changes in the biogeochemistry of the coccolithophores when there is low carbon availability, but for much of the Cenozoic the alkenone proxy should have utility.
Loes G. J. van Bree, Francien Peterse, Allix J. Baxter, Wannes De Crop, Sigrid van Grinsven, Laura Villanueva, Dirk Verschuren, and Jaap S. Sinninghe Damsté
Biogeosciences, 17, 5443–5463, https://doi.org/10.5194/bg-17-5443-2020, https://doi.org/10.5194/bg-17-5443-2020, 2020
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Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are used as a paleothermometer based on their temperature dependence in global soils, but aquatic production complicates their use in lakes. BrGDGTs in the water column of Lake Chala, East Africa, respond to oxygen conditions and mixing. Changes in their signal can be linked to bacterial community composition rather than membrane adaptation to changing conditions. Their integrated signal in the sediment reflects mean air temperature.
Alexandra N. Loginova, Andrew W. Dale, Frédéric A. C. Le Moigne, Sören Thomsen, Stefan Sommer, David Clemens, Klaus Wallmann, and Anja Engel
Biogeosciences, 17, 4663–4679, https://doi.org/10.5194/bg-17-4663-2020, https://doi.org/10.5194/bg-17-4663-2020, 2020
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We measured dissolved organic carbon (DOC), nitrogen (DON) and matter (DOM) optical properties in pore waters and near-bottom waters of the eastern tropical South Pacific off Peru. The difference between diffusion-driven and net fluxes of DOC and DON and qualitative changes in DOM optical properties suggested active microbial utilisation of the released DOM at the sediment–water interface. Our results suggest that the sediment release of DOM contributes to microbial processes in the area.
Gerard J. M. Versteegh, Alexander J. P. Houben, and Karin A. F. Zonneveld
Biogeosciences, 17, 3545–3561, https://doi.org/10.5194/bg-17-3545-2020, https://doi.org/10.5194/bg-17-3545-2020, 2020
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Anoxic sediments mostly contain much more organic matter than oxic ones, and therefore organic matter in anoxic settings is often considered to be preserved better than in oxic settings. However, through the analysis of the same fossil dinoflagellate cyst species from both oxic and anoxic settings, we show that at a molecular level the preservation in the oxic sediments may be better since in the anoxic setting the cyst macromolecule has been altered by postdepositional modification.
Jingjing Guo, Miriam Glendell, Jeroen Meersmans, Frédérique Kirkels, Jack J. Middelburg, and Francien Peterse
Biogeosciences, 17, 3183–3201, https://doi.org/10.5194/bg-17-3183-2020, https://doi.org/10.5194/bg-17-3183-2020, 2020
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The fluxes of soil organic carbon (OC) transport from land to sea are poorly constrained, mostly due to the lack of a specific tracer for soil OC. Here we evaluate the use of specific molecules derived from soil bacteria as a tracer for soil OC in a small river catchment. We find that the initial soil signal is lost upon entering the aquatic environment. However, the local environmental history of the catchment is reflected by these molecules in the lake sediments that act as their sink.
Zhuo-Yi Zhu, Joanne Oakes, Bradley Eyre, Youyou Hao, Edwin Sien Aun Sia, Shan Jiang, Moritz Müller, and Jing Zhang
Biogeosciences, 17, 2473–2485, https://doi.org/10.5194/bg-17-2473-2020, https://doi.org/10.5194/bg-17-2473-2020, 2020
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Samples were collected in August 2016 in the Rajang River and its estuary, with tropical forest in the river basin and peatland in the estuary. Organic matter composition was influenced by transportation in the river basin, whereas peatland added clear biodegraded parts to the fluvial organic matter, which implies modification of the initial lability and/or starting points in the subsequent degradation and alternation processes after the organic matter enters the sea.
Wenjie Xiao, Yasong Wang, Yongsheng Liu, Xi Zhang, Linlin Shi, and Yunping Xu
Biogeosciences, 17, 2135–2148, https://doi.org/10.5194/bg-17-2135-2020, https://doi.org/10.5194/bg-17-2135-2020, 2020
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The hadal zone (6–11 km depth) is the least explored habitat on Earth. We studied microbial branched glycerol dialkyl glycerol tetraethers (brGDGTs) in the Challenger Deep, Mariana Trench. One unique feature is the strong predominance of 6-methyl brGDGT, which likely reflects an adaption of brGDGT-producing bacteria to alkaline seawater and low temperature. BrGDGTs, with elemental and isotopic data, suggest an autochthonous product for brGDGT. A new approach is proposed for brGDGT sourcing.
Yuge Bai, Edisson Subdiaga, Stefan B. Haderlein, Heike Knicker, and Andreas Kappler
Biogeosciences, 17, 683–698, https://doi.org/10.5194/bg-17-683-2020, https://doi.org/10.5194/bg-17-683-2020, 2020
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Biogeochemical processes of SOM are key for greenhouse gas emission and water quality. We extracted SOM by water or by NaOH–HCl under oxic–anoxic conditions. Chemical and anoxic extractions lead to higher SOM electron exchange capacities, resulting in stimulation of microbial Fe(III) reduction. Therefore, aqueous pH-neutral SOM extracts should be used to reflect environmental SOM redox processes, and artifacts of chemical extractions need to be considered when evaluating SOM redox processes.
Yan Shen, Volker Thiel, Pablo Suarez-Gonzalez, Sebastiaan W. Rampen, and Joachim Reitner
Biogeosciences, 17, 649–666, https://doi.org/10.5194/bg-17-649-2020, https://doi.org/10.5194/bg-17-649-2020, 2020
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Today, sterols are widespread in plants, animals, and fungi but are almost absent in the oldest rocks. Microbial mats, representing the earliest complex ecosystems on Earth, were omnipresent in Precambrian marine environments and may have degraded the sterols at that time. Here we analyze the distribution of sterols through a microbial mat. This provides insight into how variations in biological and nonbiological factors affect the preservation of sterols in modern and ancient microbial mats.
Sarah Coffinet, Travis B. Meador, Lukas Mühlena, Kevin W. Becker, Jan Schröder, Qing-Zeng Zhu, Julius S. Lipp, Verena B. Heuer, Matthew P. Crump, and Kai-Uwe Hinrichs
Biogeosciences, 17, 317–330, https://doi.org/10.5194/bg-17-317-2020, https://doi.org/10.5194/bg-17-317-2020, 2020
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This study deals with two membrane lipids called BDGTs and PDGTs. Membrane lipids are molecules forming the cell envelope of all organisms. Different organisms produce different lipids thus they can be used to detect the presence of specific organisms in the environment. We analyzed the structure of these new lipids and looked for potential producers. We found that they are likely made by microbes emitting methane below the sediment surface and could be used to track these specific microbes.
Ying Wu, Kun Zhu, Jing Zhang, Moritz Müller, Shan Jiang, Aazani Mujahid, Mohd Fakharuddin Muhamad, and Edwin Sien Aun Sia
Biogeosciences, 16, 4517–4533, https://doi.org/10.5194/bg-16-4517-2019, https://doi.org/10.5194/bg-16-4517-2019, 2019
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Our understanding of terrestrial organic matter (TOM) in tropical peat-draining rivers remains limited, especially in Southeast Asia. We explored the characteristics of TOM via bulk parameters and lignin phenols of sediment in Malaysia. This showed that the most important plant source of the organic matter in these rivers is woody angiosperm C3 plants with limited diagenetic alteration. This slower degradation of TOM may be a link to higher total nitrogen content, especially for the small river.
Caitlyn R. Witkowski, Sylvain Agostini, Ben P. Harvey, Marcel T. J. van der Meer, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 16, 4451–4461, https://doi.org/10.5194/bg-16-4451-2019, https://doi.org/10.5194/bg-16-4451-2019, 2019
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Carbon dioxide concentrations (pCO2) in the atmosphere play an integral role in Earth system dynamics, especially climate. Past climates help us understand future ones, but reconstructing pCO2 over the geologic record remains a challenge. This research demonstrates new approaches for exploring past pCO2 via the carbon isotope fractionation in general algal lipids, which we test over a high CO2 gradient from a naturally occurring CO2 seep.
Yongli Zhou, Patrick Martin, and Moritz Müller
Biogeosciences, 16, 2733–2749, https://doi.org/10.5194/bg-16-2733-2019, https://doi.org/10.5194/bg-16-2733-2019, 2019
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We found that peatlands in coastal Sarawak, Borneo, export extremely humified organic matter, which dominates the riverine organic matter pool and conservatively mixes with seawater, while the freshly produced fraction is low and stable in concentration at all salinities. We estimated that terrigenous fractions, which showed high photolability, still account for 20 % of the coastal dissolved organic carbon pool, implying the importance of peat-derived organic matter in the coastal carbon cycle.
Kristin Doering, Claudia Ehlert, Philippe Martinez, Martin Frank, and Ralph Schneider
Biogeosciences, 16, 2163–2180, https://doi.org/10.5194/bg-16-2163-2019, https://doi.org/10.5194/bg-16-2163-2019, 2019
Alexandra N. Loginova, Sören Thomsen, Marcus Dengler, Jan Lüdke, and Anja Engel
Biogeosciences, 16, 2033–2047, https://doi.org/10.5194/bg-16-2033-2019, https://doi.org/10.5194/bg-16-2033-2019, 2019
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High primary production in the Peruvian upwelling system is followed by rapid heterotrophic utilization of organic matter and supports the formation of one of the most intense oxygen minimum zones (OMZs) in the world. Here, we estimated vertical fluxes of oxygen and dissolved organic matter (DOM) from the surface to the OMZ. Our results suggest that DOM remineralization substantially reduces oxygen concentration in the upper water column and controls the shape of the upper oxycline.
Carolina Cisternas-Novoa, Frédéric A. C. Le Moigne, and Anja Engel
Biogeosciences, 16, 927–947, https://doi.org/10.5194/bg-16-927-2019, https://doi.org/10.5194/bg-16-927-2019, 2019
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We investigate the composition and vertical fluxes of POM in two deep basins of the Baltic Sea (GB: Gotland Basin and LD: Landsort Deep). The two basins showed different O2 regimes resulting from the intrusion of oxygen-rich water from the North Sea that ventilated the deep waters in GB, but not in LD.
In GB, O2 intrusions lead to a high abundance of manganese oxides that aggregate with POM, altering its composition and vertical flux and contributing to a higher POC transfer efficiency in GB.
Marina Zamanillo, Eva Ortega-Retuerta, Sdena Nunes, Pablo Rodríguez-Ros, Manuel Dall'Osto, Marta Estrada, Maria Montserrat Sala, and Rafel Simó
Biogeosciences, 16, 733–749, https://doi.org/10.5194/bg-16-733-2019, https://doi.org/10.5194/bg-16-733-2019, 2019
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Many marine microorganisms produce polysaccharide-rich transparent exopolymer particles (TEPs) for rather unknown reasons but with important consequences for the ocean carbon cycle, sea–air gas exchange and formation of organic aerosols. Here we compare surface–ocean distributions of TEPs and physical, chemical and biological variables along a N–S transect in the Atlantic Ocean. Our data suggest that phytoplankton and not bacteria are the main TEP producers, and solar radiation acts as a sink.
Michael Philben, Sara Butler, Sharon A. Billings, Ronald Benner, Kate A. Edwards, and Susan E. Ziegler
Biogeosciences, 15, 6731–6746, https://doi.org/10.5194/bg-15-6731-2018, https://doi.org/10.5194/bg-15-6731-2018, 2018
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We explored the relationship between chemical composition and the temperature sensitivity of moss decomposition using 959-day lab incubations. Mass loss was low despite the predominance of carbohydrates, indicating the persistence of labile C. Scanning electron microscopy revealed little change in the moss cell-wall structure. These results suggest that the moss cell-wall matrix protects labile C from decomposition, contributing to the globally important stocks of moss-derived C.
Cited articles
Abualhaija, M. M. and van den Berg, C. M. G.: Chemical speciation of iron in seawater using catalytic cathodic stripping voltammetry with ligand competition against salicylaldoxime, Mar. Chem., 164, 60–74, https://doi.org/10.1016/j.marchem.2014.06.005, 2014.
Aguilar-Islas, A. M., Wu, J., Rember, R., Johansen, A. M., and Shank, L. M.: Dissolution of aerosol-derived iron in seawater: Leach solution chemistry, aerosol type, and colloidal iron fraction, Mar. Chem., 120, 25–33, 2010.
Apprill, A., Mcnally, S., Parsons, R., and Weber, L.: Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton, Aquat. Microb. Ecol., 75, 129–137, https://doi.org/10.3354/ame01753, 2015.
Bazylev, B. A.: Allochemical Metamorphism of Mantle Peridoties in the Hayes Fracture Zone of the North Atlantic, Petrology, 5, 362–379, 1997.
Beaulieu, S. E. and Szafrański, K. M.: InterRidge Global Database of Active Submarine Hydrothermal Vent Fields Version 3.4, PANGAEA, https://doi.org/10.1594/PANGAEA.917894, 2020.
Bennett, S. A., Achterberg, E. P., Connelly, D. P., Statham, P. J., Fones, G. R., and German, C. R.: The distribution and stabilisation of dissolved Fe in deep-sea hydrothermal plumes, Earth Planet. Sc. Lett., 270, 157–167, https://doi.org/10.1016/j.epsl.2008.01.048, 2008.
Bennett, S. A., Hansman, R. L., Sessions, A. L., Nakamura, K.-i., and Edwards, K. J.: Tracing iron-fueled microbial carbon production within the hydrothermal plume at the Loihi seamount, Geochim. Cosmochim. Ac., 75, 5526–5539, https://doi.org/10.1016/j.gca.2011.06.039, 2011.
Blin, K., Shaw, S., Kautsar, S. A., Medema, M. H., and Weber, T.: The antiSMASH database version 3: Increased taxonomic coverage and new query features for modular enzymes, Nucleic Acids Res., 49, D639–D643, https://doi.org/10.1093/nar/gkaa978, 2021.
Boiteau, R. M., Mende, D. R., Hawco, N. J., McIlvin, M. R., Fitzsimmons, J. N., Saito, M. A., Sedwick, P. N., DeLong, E. F., and Repeta, D. J.: Siderophore-based microbial adaptations to iron scarcity across the eastern Pacific Ocean, P. Natl. Acad. Sci. USA, 113, 14237–14242, https://doi.org/10.1073/pnas.1608594113, 2016.
Boiteau, R. M., Till, C. P., Coale, T. H., Fitzsimmons, J. N., Bruland, K. W., and Repeta, D. J.: Patterns of iron and siderophore distributions across the California Current System, Limnol. Oceanogr., 64, 376–389, https://doi.org/10.1002/lno.11046, 2019.
Buck, K. N., Sohst, B., and Sedwick, P. N.: The organic complexation of dissolved iron along the U. S. GEOTRACES (GA03) North Atlantic Section, Deep-Sea Res. Pt. II, 116, 152–165, https://doi.org/10.1016/j.dsr2.2014.11.016, 2015.
Buck, K. N., Sedwick, P. N., Sohst, B., and Carlson, C. A.: Organic complexation of iron in the eastern tropical South Pacific: Results from US GEOTRACES Eastern Pacific Zonal Transect (GEOTRACES cruise GP16), Mar. Chem., 201, 229–241, https://doi.org/10.1016/j.marchem.2017.11.007, 2018.
Bundy, R. M., Boiteau, R. M., McLean, C., Turk-Kubo, K. A., McIlvin, M. R., Saito, M. A., VAn Mooy, B. A., and Repeta, D. J.: Distinct Siderophores Contribute to Iron Cycling in the Mesopelagic at Station ALOHA, Front. Mar. Sci., 1–15, https://doi.org/10.3389/fmars.2018.00061, 2018.
Butler, A.: Marine siderophores and microbial iron mobilization, Biometals, 18, 369–374, https://doi.org/10.1007/s10534-005-3711-0, 2005.
Butler, A. and Theisen, R. M.: Iron(III)-siderophore coordination chemistry: Reactivity of marine siderophores, Coord. Chem. Rev., 254, 288–296, https://doi.org/10.1016/j.ccr.2009.09.010, 2010.
Callahan, B. J., McMurdie, P. J., Rosen, M. J., Han, A. W., Johnson, A. J. A., and Holmes, S. P.: DADA2: High-resolution sample inference from Illumina amplicon data, Nat. Methods, 13, 581–583, https://doi.org/10.1038/nmeth.3869, 2016.
Carmichael, J. R., Zhou, H., and Butler, A.: A suite of asymmetric citrate siderophores isolated from a marine Shewanella species, J. Inorg. Biochem., 198, 1–6, https://doi.org/10.1016/j.jinorgbio.2019.110736, 2019.
Cowen, J. P. and Bruland, K. W.: Metal deposits associated with bacteria: implications for Fe and Mn marine biogeochemistry, Deep-Sea Res. Pt. I,, 32, 253–272, https://doi.org/10.1016/0198-0149(85)90078-0, 1985.
Cowen, J. P., Massoth, G. J., and Feely, R. A.: Scavenging rates of dissolved manganese in a hydrothermal vent plume, Deep-Sea Res. Pt. I,, 37, 1619–1637, https://doi.org/10.1016/0198-0149(90)90065-4, 1990.
Crowley, D. E., Wang, Y. C., Reid, C. P. P., and Szaniszlo, P. J.: Mechanisms of iron acquisition from siderophores by microorganisms and plants, Plant Soil, 130, 179–198, 1991.
Dick, G. J., Anantharaman, K., Baker, B. J., Li, M., Reed, D. C., and Sheik, C. S.: The microbiology of deep-sea hydrothermal vent plumes: Ecological and biogeographic linkages to seafloor and water column habitats, Front. Microbiol., 4, 1–16, https://doi.org/10.3389/fmicb.2013.00124, 2013.
Fishwick, M. P., Sedwick, P. N., Lohan, M. C., Worsfold, P. J., Buck, K. N., Church, T. M., and Ussher, S. J.: The impact of changing surface ocean conditions on the dissolution of aerosol iron, Global Biogeochem. Cy., 28, 1235–1250, https://doi.org/10.1002/2014GB004921, 2014.
Fitzsimmons, J. N. and Boyle, E. A.: Assessment and comparison of Anopore and cross flow filtration methods for the determination of dissolved iron size fractionation into soluble and colloidal phases in seawater, Limnol. Oceanogr.-Meth., 12, 246–263, https://doi.org/10.4319/lom.2014.12.246, 2014.
Fitzsimmons, J. N., Boyle, E. a., and Jenkins, W. J.: Distal transport of dissolved hydrothermal iron in the deep South Pacific Ocean, P. Natl. Acad. Sci. USA, 111, 16654–16661, https://doi.org/10.1073/pnas.1418778111, 2014.
Fitzsimmons, J. N., John, S. G., Marsay, C. M., Hoffman, C. L., Nicholas, S. L., Toner, B. M., German, C. R., and Sherrell, R. M.: Iron persistence in the distal hydrothermal plume supported by dissolved – particulate exchange, Nat. Geosci., 10, 1–8, https://doi.org/10.1038/ngeo2900, 2017.
German, C. and Seyfried, W. E.: Hydrothermal Processes, 2nd edn., Elsevier Ltd., https://doi.org/10.1016/B978-0-08-095975-7.00201-1, 1–39 pp., 2014.
Gledhill, M. and Buck, K. N.: The organic complexation of iron in the marine environment: A review, Front. Microbiol., 3, 1–17, https://doi.org/10.3389/fmicb.2012.00069, 2012.
Gu, H., Sun, Q., Luo, J., Zhang, J., and Sun, L.: A First Study of the Virulence Potential of a Bacillus subtilis Isolate From Deep-Sea Hydrothermal Vent, Front. Cell. Infect. Mi., 9, 1–14, https://doi.org/10.3389/fcimb.2019.00183, 2019.
Hassler, C., Cabanes, D., Blanco-ameijeiras, S., Sander, S. G., and Benner, R.: Importance of refractory ligands and their photodegradation for iron oceanic inventories and cycling, Mar. Freshwater Res., 71, 311–320, 2020.
Hassler, C. S., van den Berg, C. M. G., and Boyd, P. W.: Toward a regional classification to provide a more inclusive examination of the ocean biogeochemistry of iron-binding ligands, Front. Mar. Sci., 4, 2296–7745, https://doi.org/10.3389/fmars.2017.00019, 2017.
Hawkes, J. A., Gledhill, M., Connelly, D. P., and Achterberg, E. P.: Characterisation of iron binding ligands in seawater by reverse titration, Anal. Chim. Acta, 766, 53–60, https://doi.org/10.1016/j.aca.2012.12.048, 2013a.
Hawkes, J. A., Connelly, D. P., Gledhill, M., and Achterberg, E. P.: The stabilisation and transportation of dissolved iron from high temperature hydrothermal vent systems, Earth Planet. Sc. Lett., 375, 280–290, https://doi.org/10.1016/j.epsl.2013.05.047, 2013b.
Hider, R. C. and Kong, X.: Chemistry and biology of siderophores, Nat. Prod. Rep., 27, 637–657, https://doi.org/10.1039/b906679a, 2010.
Hoffman, C. and Bundy, R.: FRidge GA13 Organic Ligands CSV data, Zenodo [data set], https://doi.org/10.5281/zenodo.7325154, 2022.
Hoffman, C. L., Nicholas, S. L., Ohnemus, D. C., Fitzsimmons, J. N., Sherrell, R. M., German, C. R., Heller, M. I., Lee, J. mi, Lam, P. J., and Toner, B. M.: Near-field iron and carbon chemistry of non-buoyant hydrothermal plume particles, Southern East Pacific Rise 15° S, Mar. Chem., 201, 183–197, https://doi.org/10.1016/j.marchem.2018.01.011, 2018.
Hoffman, C. L., Schladweiler, C., Seaton, N. C. A., Nicholas, S. L., Fitzsimmons, J., Sherrell, R. M., German, C. R., Lam, P., and Toner, B. M.: Diagnostic morphology and solid-state chemical speciation of hydrothermally derived particulate Fe in a long-range dispersing plume, ACS Earth Sp. Chem., 4, 1831–1842, https://doi.org/10.1021/acsearthspacechem.0c00067, 2020.
Holden, J., Breier, J., Rogers, K., Schulte, M., and Toner, B.: Biogeochemical processes at hydrothermal vents: microbes and minerals, bioenergetics, and carbon fluxes, Oceanography, 25, 196–208, https://doi.org/10.5670/oceanog.2012.18, 2012.
Homann, V. V, Sandy, M., Tincu, J. A., Templeton, A. S., Tebo, B. M., and Butler, A.: Loihichelins A–F , a Suite of Amphiphilic Siderophores Produced by the Marine Bacterium Halomonas LOB-5, J. Nat. Prod., 72, 884–888, 2009.
Honeyman, B. D. and Santschi, P. H.: A Brownian-pumping model for oceanic trace metal scavenging: Evidence from Th isotopes, J. Mar. Res., 47, 4, 1989.
Kato, C. and Nogi, Y.: Correlation between phylogenetic structure and function: examples from deep-sea Shewanella, FEMS Microbiol. Ecol., 35, 223–230, 2001.
Kelley, D. S. and Shank, T. M.: Hydrothermal systems: A decade of discovery in slow spreading environments, Geophys. Monogr. Ser., 188, 369–407, 2010.
Kleint, C., Hawkes, J. A., Sander, S. G., and Koschinsky, A.: Voltammetric Investigation of Hydrothermal Iron Speciation, Front. Mar. Sci., 3, 1–11, https://doi.org/10.3389/fmars.2016.00075, 2016.
Kuhn, K. M., Maurice, P. A., States, U., Neubauer, E., Hofmann, T., and von der Kammer, F.: Accessibility of Humic-Associated Fe to a Microbial Siderophore: Implications for Bioavailability, Environ. Sci. Technol., 48, 1015–1022, 2014.
Kumler, W. and Ingalls, A. E.: The R Journal: Tidy Data Neatly Resolves Mass-Spectrometry's Ragged Arrays, R J., 14, 193–202, 2022.
Laglera, L. M. and van den Berg, C. M. G.: Evidence for geochemical control of iron by humic substances in seawater, Limnol. Oceanogr., 54, 610–619, 2009.
Lauderdale, J. M., Braakman, R., Forget, G., Dutkiewicz, S., and Follows, M. J.: Microbial feedbacks optimize ocean iron availability, P. Natl. Acad. Sci. USA, 117, 4842–4849, https://doi.org/10.1073/pnas.1917277117, 2020.
Li, M., Toner, B. M., Baker, B. J., Breier, J. a, Sheik, C. S., and Dick, G. J.: Microbial iron uptake as a mechanism for dispersing iron from deep-sea hydrothermal vents, Nat. Commun., 5, 3192, https://doi.org/10.1038/ncomms4192, 2014.
Li, J., Babcock-Adams, L., Boiteau, R. M., McIlvin, M. R., Manck, L. E., Sieber, M., Lanning, N. T., Bundy, R. M., Bian, X., Ștreangă, I. M., and Granzow, B. N.: Microbial iron limitation in the ocean's twilight zone, Nature, 633, 823–827, https://doi.org/10.1038/s41586-024-07905-z, 2024.
Lough, A. J. M., Homoky, W. B., Connelly, D. P., Nakamura, K., Abyaneh, M. K., Kaulich, B., and Mills, R. A.: Soluble iron conservation and colloidal iron dynamics in a hydrothermal plume, Chem. Geol., 511, 225–237, https://doi.org/10.1016/j.chemgeo.2019.01.001, 2019.
Lough, A. J. M., Tagliabue, A., Demasy, C., Resing, J. A., Mellett, T., Wyatt, N. J., and Lohan, M. C.: Tracing differences in iron supply to the Mid-Atlantic Ridge valley between hydrothermal vent sites: implications for the addition of iron to the deep ocean, Biogeosciences, 20, 405–420, https://doi.org/10.5194/bg-20-405-2023, 2023.
Mackey, D. J. and Zirino, A.: Comments on trace metal speciation in seawater or do “onions” grow in the sea?, Anal. Chim. Acta, 284, 635–647, 1994.
Mahieu, L., Whitby, H., Dulaquais, G., Tilliette, C., Guigue, C., Tedetti, M., Lefevre, D., Fourrier, P., Bressac, M., Sarthou, G., Bonnet, S., Guieu, C., and Salaün, P.: Iron-binding by dissolved organic matter in the Western Tropical South Pacific Ocean (GEOTRACES TONGA cruise GPpr14), Front. Mar. Sci., 11, 2296–7745, https://doi.org/10.3389/fmars.2024.1304118, 2024.
Manck, L. E., Park, J., Tully, B. J., Poire, A. M., Bundy, R. M., Dupont, C. L., and Barbeau, K. A.: Petrobactin, a siderophore produced by Alteromonas, mediates community iron acquisition in the global ocean, ISME J., 16, 358–369, https://doi.org/10.1038/s41396-021-01065-y, 2022.
Martinez, J. S., Carter-Franklin, J. N., Mann, E. L., Martin, J. D., Haygood, M. G., and Butler, A.: Structure and membrane affinity of a suite of amphiphilic siderophores produced by a marine bacterium, P. Natl. Acad. Sci. USA, 100, 3754–3759, https://doi.org/10.1073/pnas.0637444100, 2003.
McLaren, M. R. and Callahan, B. J.: Silva 138.1 prokaryotic SSU taxonomic training data formatted for DADA2, Zenodo [data set], https://doi.org/10.5281/zenodo.4587955, 2021.
Misumi, K., Lindsay, K., Moore, J. K., Doney, S. C., Tsumune, D., and Yoshida, Y.: Humic substances may control dissolved iron distributions in the global ocean: Implications from numerical simulations, Global Biogeochem. Cy., 27, 450–462, 2013.
Monreal, P.: LC-MS data from FRidge, MassIVE Repository, Center for Computational Mass Spectrometry, University of California, San Diego [data set], https://doi.org/10.25345/C5V97ZW7N, 2024.
Moore, L. E., Heller, M. I., Barbeau, K. A., Moffett, J. W., and Bundy, R. M.: Organic complexation of iron by strong ligands and siderophores in the eastern tropical North Pacific oxygen deficient zone, Mar. Chem., 236, 104021, https://doi.org/10.1016/j.marchem.2021.104021, 2021.
Muller, F. L. L.: Exploring the Potential Role of Terrestrially Derived Humic Substances in the Marine Biogeochemistry of Iron, Front. Earth Sci., 6, 1–20, https://doi.org/10.3389/feart.2018.00159, 2018.
Omanović, D., Garnier, C., and Pižeta, I.: ProMCC: An all-in-one tool for trace metal complexation studies, Mar. Chem., 173, 25–39, https://doi.org/10.1016/j.marchem.2014.10.011, 2015.
Parada, A. E., Needham, D. M., and Fuhrman, J. A.: Every base matters: Assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples, Environ. Microbiol., 18, 1403–1414, https://doi.org/10.1111/1462-2920.13023, 2016.
Park, J., Durham, B. P., Key, R. S., Groussman, R. D., Pinedo-Gonzalez, P., Hawco, N. J., John, S. G., Carlson, M. C. G., Lindell, D., Juranek, L., Ferrón, S., Ribalet, F., Armbrust, E. V., Ingalls, A. E., and Bundy, R. M.: Siderophore production and utilization by microbes in the North Pacific Ocean, bioRxiv, 2022.02.26.482025, https://doi.org/10.1101/2022.02.26.482025, 2022.
Park, J., Durham, B. P., Key, R. S., Groussman, R. D., Bartolek, Z., Pinedo-Gonzalez, P., Hawco, N. J., John, S. G., Carlson, M. C. G., and Lindell, D.: Siderophore production and utilization by marine bacteria in the North Pacific Ocean, Limnol. Oceanogr., 68, 1636–1653, 2023.
Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., Peplies, J., and Glöckner, F. O.: The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools, Nucleic Acids Res., 41, 590–596, https://doi.org/10.1093/nar/gks1219, 2013.
Reitz, Z. L., Butler, A., and Medema, M. H.: Automated genome mining predicts combinatorial diversity and taxonomic distribution of peptide metallophore structures, bioRxiv, 15–20, https://doi.org/10.1101/2022.12.14.519525, 2022.
Resing, J. a., Sedwick, P. N., German, C. R., Jenkins, W. J., Moffett, J. W., Sohst, B. M., and Tagliabue, A.: Basin-scale transport of hydrothermal dissolved metals across the South Pacific Ocean, Nature, 523, 200–203, https://doi.org/10.1038/nature14577, 2015.
Rizzi, A., Roy, S., Bellenger, J. P., and Beauregard, P. B.: Iron homeostasis in Bacillus subtilis requires siderophore production and biofilm formation, Appl. Environ. Microb., 85, e02439-18, https://doi.org/10.1128/AEM.02439-18, 2019.
Ruttkies, C., Schymanski, E. L., Wolf, S., Hollender, J., and Neumann, S.: MetFrag relaunched: incorporating strategies beyond in silico fragmentation, J. Cheminformatics, 8, 1–16, https://doi.org/10.1186/s13321-016-0115-9, 2016.
Sander, S. G. and Koschinsky, A.: Metal flux from hydrothermal vents increased by organic complexation, Nat. Geosci., 4, 145–150, https://doi.org/10.1038/ngeo1088, 2011.
Sandy, M. and Butler, A.: Microbial iron acquisition: marine and terrestrial siderophores, Chem. Rev., 109, 4580–95, https://doi.org/10.1021/cr9002787, 2009.
Santoro, A. E., Casciotti, K. L., and Francis, C. A.: Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current, Environ. Microbiol., 12, 1989–2006, https://doi.org/10.1111/j.1462-2920.2010.02205.x, 2010.
Sheik, C. S., Anantharaman, K., Breier, J. A., Sylvan, J. B., Edwards, K. J., and Dick, G. J.: Spatially resolved sampling reveals dynamic microbial communities in rising hydrothermal plumes across a back-arc basin, ISME J., 9, 1434–45, https://doi.org/10.1038/ismej.2014.228, 2015.
Slagter, H. A., Laglera, L. M., Sukekava, C., and Gerringa, L. J. A.: Fe-Binding Organic Ligands in the Humic-Rich TransPolar Drift in the Surface Arctic Ocean Using Multiple Voltammetric Methods, J. Geophys. Res.-Oceans, 124, 1491–1508, https://doi.org/10.1029/2018JC014576, 2019.
Sorokina, M., Merseburger, P., Rajan, K., Yirik, M. A., and Steinbeck, C.: COCONUT online: Collection of Open Natural Products database, J. Cheminformatics, 13, 1–13, https://doi.org/10.1186/s13321-020-00478-9, 2021.
Stephens, B. M., Opalk, K., Petras, D., Liu, S., Comstock, J., Aluwihare, L. I., Hansell, D. A., and Carlson, C. A.: Organic Matter Composition at Ocean Station Papa Affects Its Bioavailability, Bacterioplankton Growth Efficiency and the Responding Taxa, Front. Mar. Sci., 7, 2296–7745, https://doi.org/10.3389/fmars.2020.590273, 2020.
Sumner, L. W., Amberg, A., Barrett, D., Beale, M. H., Beger, R., Daykin, C. A., Fan, T. W.-M., Fiehn, O., Goodacre, R., Griffin, J. L., Hankemeier, T., Hardy, N., Harnly, J., Higashi, R., Kopka, J., Lane, A. N., Lindon, J. C., Marriott, P., Nicholls, A. W., Reily, M. D., Thaden, J. J., and Viant, M. R.: Proposed minimum reporting standards for chemical analysis, Metabolomics, 3, 211–221, https://doi.org/10.1007/s11306-007-0082-2, 2007.
Tagliabue, A., Bowie, A. R., Boyd, P. W., Buck, K. N., Johnson, K. S., and Saito, M. A.: The integral role of iron in ocean biogeochemistry, Nature, 543, 51–59, https://doi.org/10.1038/nature21058, 2017.
Toner, B. M., Fakra, S. C., Manganini, S. J., Santelli, C. M., Marcus, M. a., Moffett, J. W., Rouxel, O., German, C. R., and Edwards, K. J.: Preservation of iron(II) by carbon-rich matrices in a hydrothermal plume, Nat. Geosci., 2, 197–201, https://doi.org/10.1038/ngeo433, 2009.
Tortell, P. D., Maldonado, M. T., and Price, N. M.: The role of heterotrophic bacteria in iron-limited ocean ecosystems, Nature, 383, 330–332, https://doi.org/10.1038/383330a0, 1996.
Vraspir, J. M. and Butler, A.: Chemistry of marine ligands and siderophores, Annu Rev. Mar. Sci., 1, 43–63, https://doi.org/10.1146/annurev.marine.010908.163712, 2009.
Wang, H., Wang, W., Liu, M., Zhou, H., Ellwood, M. J., Butterfield, D. A., Buck, N. J., and Resing, J. A.: Iron ligands and isotopes in hydrothermal plumes over backarc volcanoes in the Northeast Lau Basin, Southwest Pacific Ocean, Geochim. Cosmochim. Ac., 336, 341–352, 2022.
Waska, H., Koschinsky, A., Ruiz Chancho, M. J., and Dittmar, T.: Investigating the potential of solid-phase extraction and Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) for the isolation and identification of dissolved metal-organic complexes from natural waters, Mar. Chem., 173, 78–92, https://doi.org/10.1016/j.marchem.2014.10.001, 2015.
Whitby, H., Planquette, H., Cassar, N., Bucciarelli, E., Osburn, C. L., Janssen, D. J., Cullen, J. T., González, A. G., Völker, C., and Sarthou, G.: A call for refining the role of humic-like substances in the oceanic iron cycle, Sci. Rep.-UK, 10, 6144, 2020.
Whitby, H., Park, J., Shaked, Y., Boiteau, R. M., Buck, K. N., and Bundy, R. M.: New insights into the organic complexation of bioactive trace metals in the global ocean from the GEOTRACES era, Oceanography, 37, 142–155, 2024.
Yücel, M., Gartman, A., Chan, C. S., and Luther, G. W.: Hydrothermal vents as a kinetically stable source of iron-sulphide-bearing nanoparticles to the ocean, Nat. Geosci., 4, 367–371, https://doi.org/10.1038/ngeo1148, 2011.
Co-editor-in-chief
In their study, Hoffmann and co-workers provide new exciting data on the role of organic ligands in supporting elevated dissolved iron in hydrothermal vent plumes. The authors were able to detect siderophores (including amphiphilic types) in hydrothermal plumes at different sites along a 1,700 km section of the Mid-Atlantic Ridge, pointing to microbial utilization of siderophores to access particulate hydrothermal iron.
In their study, Hoffmann and co-workers provide new exciting data on the role of organic ligands...
Short summary
Hydrothermally derived iron can be transported kilometers away from deep-sea vents, representing a significant flux of vital micronutrients to the ocean. However, the mechanisms that support the stabilization of dissolved iron remain elusive. Using electrochemical, spectrometry, and genomic methods, we demonstrated that strong ligands exert an important control on iron in plumes, and high-affinity iron-binding siderophores were identified in several hydrothermal plume samples for the first time.
Hydrothermally derived iron can be transported kilometers away from deep-sea vents, representing...
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