Articles | Volume 10, issue 7
https://doi.org/10.5194/bg-10-4785-2013
© Author(s) 2013. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-10-4785-2013
© Author(s) 2013. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
15 Jul 2013
Research article |
| 15 Jul 2013
Modeling plankton ecosystem functioning and nitrogen fluxes in the oligotrophic waters of the Beaufort Sea, Arctic Ocean: a focus on light-driven processes
V. Le Fouest
Laboratoire d'Océanographie de Villefranche, BP 8, CNRS UMR7093 & Université Pierre et Marie Curie, 06238 Villefranche-sur-Mer Cedex, France
B. Zakardjian
Université du Sud Toulon-Var, CNRS/INSU, IRD, Mediterranean Institute of Oceanography (MIO), UM 110, 83957 La Garde, France
Aix-Marseille Université, CNRS/INSU, IRD, Mediterranean Institute of Oceanography (MIO), UM 110, 13288 Marseille, France
Institut des sciences de la mer de Rimouski, Université du Québec à Rimouski, 310, allée des Ursulines, C.P. 3300 Rimouski (Quebec) G5L 3A1, Canada
P. Raimbault
Université du Sud Toulon-Var, CNRS/INSU, IRD, Mediterranean Institute of Oceanography (MIO), UM 110, 83957 La Garde, France
Aix-Marseille Université, CNRS/INSU, IRD, Mediterranean Institute of Oceanography (MIO), UM 110, 13288 Marseille, France
F. Joux
Laboratoire d'Océanographie Microbienne, CNRS UMR7621 & Université Pierre et Marie Curie, 66650 Banyuls-sur-Mer, France
M. Babin
Takuvik Joint International Laboratory, Université Laval (Canada) & Centre National de la Recherche Scientifique (France), Département de Biologie, 1045, Avenue de la Médecine, Quebec (Quebec), G1V 0A6, Canada
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Martine Lizotte, Bennet Juhls, Atsushi Matsuoka, Philippe Massicotte, Gaëlle Mével, David Obie James Anikina, Sofia Antonova, Guislain Bécu, Marine Béguin, Simon Bélanger, Thomas Bossé-Demers, Lisa Bröder, Flavienne Bruyant, Gwénaëlle Chaillou, Jérôme Comte, Raoul-Marie Couture, Emmanuel Devred, Gabrièle Deslongchamps, Thibaud Dezutter, Miles Dillon, David Doxaran, Aude Flamand, Frank Fell, Joannie Ferland, Marie-Hélène Forget, Michael Fritz, Thomas J. Gordon, Caroline Guilmette, Andrea Hilborn, Rachel Hussherr, Charlotte Irish, Fabien Joux, Lauren Kipp, Audrey Laberge-Carignan, Hugues Lantuit, Edouard Leymarie, Antonio Mannino, Juliette Maury, Paul Overduin, Laurent Oziel, Colin Stedmon, Crystal Thomas, Lucas Tisserand, Jean-Éric Tremblay, Jorien Vonk, Dustin Whalen, and Marcel Babin
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Flavienne Bruyant, Rémi Amiraux, Marie-Pier Amyot, Philippe Archambault, Lise Artigue, Lucas Barbedo de Freitas, Guislain Bécu, Simon Bélanger, Pascaline Bourgain, Annick Bricaud, Etienne Brouard, Camille Brunet, Tonya Burgers, Danielle Caleb, Katrine Chalut, Hervé Claustre, Véronique Cornet-Barthaux, Pierre Coupel, Marine Cusa, Fanny Cusset, Laeticia Dadaglio, Marty Davelaar, Gabrièle Deslongchamps, Céline Dimier, Julie Dinasquet, Dany Dumont, Brent Else, Igor Eulaers, Joannie Ferland, Gabrielle Filteau, Marie-Hélène Forget, Jérome Fort, Louis Fortier, Martí Galí, Morgane Gallinari, Svend-Erik Garbus, Nicole Garcia, Catherine Gérikas Ribeiro, Colline Gombault, Priscilla Gourvil, Clémence Goyens, Cindy Grant, Pierre-Luc Grondin, Pascal Guillot, Sandrine Hillion, Rachel Hussherr, Fabien Joux, Hannah Joy-Warren, Gabriel Joyal, David Kieber, Augustin Lafond, José Lagunas, Patrick Lajeunesse, Catherine Lalande, Jade Larivière, Florence Le Gall, Karine Leblanc, Mathieu Leblanc, Justine Legras, Keith Lévesque, Kate-M. Lewis, Edouard Leymarie, Aude Leynaert, Thomas Linkowski, Martine Lizotte, Adriana Lopes dos Santos, Claudie Marec, Dominique Marie, Guillaume Massé, Philippe Massicotte, Atsushi Matsuoka, Lisa A. Miller, Sharif Mirshak, Nathalie Morata, Brivaela Moriceau, Philippe-Israël Morin, Simon Morisset, Anders Mosbech, Alfonso Mucci, Gabrielle Nadaï, Christian Nozais, Ingrid Obernosterer, Thimoté Paire, Christos Panagiotopoulos, Marie Parenteau, Noémie Pelletier, Marc Picheral, Bernard Quéguiner, Patrick Raimbault, Joséphine Ras, Eric Rehm, Llúcia Ribot Lacosta, Jean-François Rontani, Blanche Saint-Béat, Julie Sansoulet, Noé Sardet, Catherine Schmechtig, Antoine Sciandra, Richard Sempéré, Caroline Sévigny, Jordan Toullec, Margot Tragin, Jean-Éric Tremblay, Annie-Pier Trottier, Daniel Vaulot, Anda Vladoiu, Lei Xue, Gustavo Yunda-Guarin, and Marcel Babin
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Snow physical properties on Arctic sea ice are monitored during the melt season. As snow grains grow, and the snowpack thickness is reduced, the surface albedo decreases. The extra absorbed energy accelerates melting. Radiative transfer modeling shows that more radiation is then transmitted to the snow–sea-ice interface. A sharp increase in transmitted radiation takes place when the snowpack thins significantly, and this coincides with the initiation of the phytoplankton bloom in the seawater.
Christophe Perron, Christian Katlein, Simon Lambert-Girard, Edouard Leymarie, Louis-Philippe Guinard, Pierre Marquet, and Marcel Babin
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Characterizing the evolution of inherent optical properties (IOPs) of sea ice in situ is necessary to improve climate and arctic ecosystem models. Here we present the development of an optical probe, based on the spatially resolved diffuse reflectance method, to measure IOPs of a small volume of sea ice (dm3) in situ and non-destructively. For the first time, in situ vertically resolved profiles of the dominant IOP, the reduced scattering coefficient, were obtained for interior sea ice.
Philippe Massicotte, Rainer M. W. Amon, David Antoine, Philippe Archambault, Sergio Balzano, Simon Bélanger, Ronald Benner, Dominique Boeuf, Annick Bricaud, Flavienne Bruyant, Gwenaëlle Chaillou, Malik Chami, Bruno Charrière, Jing Chen, Hervé Claustre, Pierre Coupel, Nicole Delsaut, David Doxaran, Jens Ehn, Cédric Fichot, Marie-Hélène Forget, Pingqing Fu, Jonathan Gagnon, Nicole Garcia, Beat Gasser, Jean-François Ghiglione, Gaby Gorsky, Michel Gosselin, Priscillia Gourvil, Yves Gratton, Pascal Guillot, Hermann J. Heipieper, Serge Heussner, Stanford B. Hooker, Yannick Huot, Christian Jeanthon, Wade Jeffrey, Fabien Joux, Kimitaka Kawamura, Bruno Lansard, Edouard Leymarie, Heike Link, Connie Lovejoy, Claudie Marec, Dominique Marie, Johannie Martin, Jacobo Martín, Guillaume Massé, Atsushi Matsuoka, Vanessa McKague, Alexandre Mignot, William L. Miller, Juan-Carlos Miquel, Alfonso Mucci, Kaori Ono, Eva Ortega-Retuerta, Christos Panagiotopoulos, Tim Papakyriakou, Marc Picheral, Louis Prieur, Patrick Raimbault, Joséphine Ras, Rick A. Reynolds, André Rochon, Jean-François Rontani, Catherine Schmechtig, Sabine Schmidt, Richard Sempéré, Yuan Shen, Guisheng Song, Dariusz Stramski, Eri Tachibana, Alexandre Thirouard, Imma Tolosa, Jean-Éric Tremblay, Mickael Vaïtilingom, Daniel Vaulot, Frédéric Vaultier, John K. Volkman, Huixiang Xie, Guangming Zheng, and Marcel Babin
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The MALINA oceanographic expedition was conducted in the Mackenzie River and the Beaufort Sea systems. The sampling was performed across seven shelf–basin transects to capture the meridional gradient between the estuary and the open ocean. The main goal of this research program was to better understand how processes such as primary production are influencing the fate of organic matter originating from the surrounding terrestrial landscape during its transition toward the Arctic Ocean.
Anna J. Crawford, Derek Mueller, Gregory Crocker, Laurent Mingo, Luc Desjardins, Dany Dumont, and Marcel Babin
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Large tabular icebergs (
ice islands) are symbols of climate change as well as marine hazards. We measured thickness along radar transects over two visits to a 14 km2 Arctic ice island and left automated equipment to monitor surface ablation and thickness over 1 year. We assess variation in thinning rates and calibrate an ice–ocean melt model with field data. Our work contributes to understanding ice island deterioration via logistically complex fieldwork in a remote environment.
Sinikka T. Lennartz, Christa A. Marandino, Marc von Hobe, Meinrat O. Andreae, Kazushi Aranami, Elliot Atlas, Max Berkelhammer, Heinz Bingemer, Dennis Booge, Gregory Cutter, Pau Cortes, Stefanie Kremser, Cliff S. Law, Andrew Marriner, Rafel Simó, Birgit Quack, Günther Uher, Huixiang Xie, and Xiaobin Xu
Earth Syst. Sci. Data, 12, 591–609, https://doi.org/10.5194/essd-12-591-2020, https://doi.org/10.5194/essd-12-591-2020, 2020
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Sulfur-containing trace gases in the atmosphere influence atmospheric chemistry and the energy budget of the Earth by forming aerosols. The ocean is an important source of the most abundant sulfur gas in the atmosphere, carbonyl sulfide (OCS) and its most important precursor carbon disulfide (CS2). In order to assess global variability of the sea surface concentrations of both gases to calculate their oceanic emissions, we have compiled a database of existing shipborne measurements.
Philippe Massicotte, Rémi Amiraux, Marie-Pier Amyot, Philippe Archambault, Mathieu Ardyna, Laurent Arnaud, Lise Artigue, Cyril Aubry, Pierre Ayotte, Guislain Bécu, Simon Bélanger, Ronald Benner, Henry C. Bittig, Annick Bricaud, Éric Brossier, Flavienne Bruyant, Laurent Chauvaud, Debra Christiansen-Stowe, Hervé Claustre, Véronique Cornet-Barthaux, Pierre Coupel, Christine Cox, Aurelie Delaforge, Thibaud Dezutter, Céline Dimier, Florent Domine, Francis Dufour, Christiane Dufresne, Dany Dumont, Jens Ehn, Brent Else, Joannie Ferland, Marie-Hélène Forget, Louis Fortier, Martí Galí, Virginie Galindo, Morgane Gallinari, Nicole Garcia, Catherine Gérikas Ribeiro, Margaux Gourdal, Priscilla Gourvil, Clemence Goyens, Pierre-Luc Grondin, Pascal Guillot, Caroline Guilmette, Marie-Noëlle Houssais, Fabien Joux, Léo Lacour, Thomas Lacour, Augustin Lafond, José Lagunas, Catherine Lalande, Julien Laliberté, Simon Lambert-Girard, Jade Larivière, Johann Lavaud, Anita LeBaron, Karine Leblanc, Florence Le Gall, Justine Legras, Mélanie Lemire, Maurice Levasseur, Edouard Leymarie, Aude Leynaert, Adriana Lopes dos Santos, Antonio Lourenço, David Mah, Claudie Marec, Dominique Marie, Nicolas Martin, Constance Marty, Sabine Marty, Guillaume Massé, Atsushi Matsuoka, Lisa Matthes, Brivaela Moriceau, Pierre-Emmanuel Muller, Christopher-John Mundy, Griet Neukermans, Laurent Oziel, Christos Panagiotopoulos, Jean-Jacques Pangrazi, Ghislain Picard, Marc Picheral, France Pinczon du Sel, Nicole Pogorzelec, Ian Probert, Bernard Quéguiner, Patrick Raimbault, Joséphine Ras, Eric Rehm, Erin Reimer, Jean-François Rontani, Søren Rysgaard, Blanche Saint-Béat, Makoto Sampei, Julie Sansoulet, Catherine Schmechtig, Sabine Schmidt, Richard Sempéré, Caroline Sévigny, Yuan Shen, Margot Tragin, Jean-Éric Tremblay, Daniel Vaulot, Gauthier Verin, Frédéric Vivier, Anda Vladoiu, Jeremy Whitehead, and Marcel Babin
Earth Syst. Sci. Data, 12, 151–176, https://doi.org/10.5194/essd-12-151-2020, https://doi.org/10.5194/essd-12-151-2020, 2020
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The Green Edge initiative was developed to understand the processes controlling the primary productivity and the fate of organic matter produced during the Arctic spring bloom (PSB). In this article, we present an overview of an extensive and comprehensive dataset acquired during two expeditions conducted in 2015 and 2016 on landfast ice southeast of Qikiqtarjuaq Island in Baffin Bay.
Gauthier Verin, Florent Dominé, Marcel Babin, Ghislain Picard, and Laurent Arnaud
The Cryosphere Discuss., https://doi.org/10.5194/tc-2019-113, https://doi.org/10.5194/tc-2019-113, 2019
Publication in TC not foreseen
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The results of two sampling campaigns conducted on landfast sea ice in Baffin Bay show that the melt season can be divided into four main phases during which surface albedo and snow properties show distinct signatures. A radiative transfer model was used to successfully reconstruct the albedo from snow properties. This modeling work highlights that only little changes on the very surface of the snowpack are able to dramatically change the albedo, a key element for the energy budget of sea ice.
Yang Li, Guisheng Song, Philippe Massicotte, Fangming Yang, Ruihuan Li, and Huixiang Xie
Biogeosciences, 16, 2751–2770, https://doi.org/10.5194/bg-16-2751-2019, https://doi.org/10.5194/bg-16-2751-2019, 2019
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We surveyed the spatial and seasonal variations and estimated the seaward export of DOM in the of Pearl River estuary (PRE), China. The concentration of DOM in this estuary decreases from land to sea but the change in its chemical character is marginal. The concentration and export of DOM are the lowest among the world's major rivers. Yet DOM delivered from the PRE is protein-rich and can be readily used by microbes, thereby exerting a potentially important impact on the local marine ecosystem.
Jens K. Ehn, Rick A. Reynolds, Dariusz Stramski, David Doxaran, Bruno Lansard, and Marcel Babin
Biogeosciences, 16, 1583–1605, https://doi.org/10.5194/bg-16-1583-2019, https://doi.org/10.5194/bg-16-1583-2019, 2019
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Beam attenuation at 660 nm and suspended particle matter (SPM) relationships were determined during the MALINA cruise in August 2009 to the Canadian Beaufort Sea in order to expand our knowledge of particle distributions in Arctic shelf seas. The relationship was then used to determine SPM distributions for four other expeditions to the region. SPM patterns on the shelf were explained by an interplay between wind forcing, river discharge, and melting sea ice that controls the circulation.
Martí Galí, Maurice Levasseur, Emmanuel Devred, Rafel Simó, and Marcel Babin
Biogeosciences, 15, 3497–3519, https://doi.org/10.5194/bg-15-3497-2018, https://doi.org/10.5194/bg-15-3497-2018, 2018
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We developed a new algorithm to estimate the sea-surface concentration of dimethylsulfide (DMS) using satellite data. DMS is a gas produced by marine plankton that, once emitted to the atmosphere, plays a key climatic role by seeding cloud formation. We used the algorithm to produce global DMS maps and also regional DMS time series. The latter suggest that DMS can vary largely from one year to another, which should be taken into account in atmospheric studies.
Vincent Le Fouest, Atsushi Matsuoka, Manfredi Manizza, Mona Shernetsky, Bruno Tremblay, and Marcel Babin
Biogeosciences, 15, 1335–1346, https://doi.org/10.5194/bg-15-1335-2018, https://doi.org/10.5194/bg-15-1335-2018, 2018
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Climate warming could enhance the load of terrigenous dissolved organic carbon (tDOC) of Arctic rivers. We show that tDOC concentrations simulated by an ocean–biogeochemical model in the Canadian Beaufort Sea compare favorably with their satellite counterparts. Over spring–summer, riverine tDOC contributes to 35 % of primary production and an equivalent of ~ 10 % of tDOC is exported westwards with the potential for fueling the biological production of the eastern Alaskan nearshore waters.
Y. Zhang and H. Xie
Biogeosciences, 12, 6823–6836, https://doi.org/10.5194/bg-12-6823-2015, https://doi.org/10.5194/bg-12-6823-2015, 2015
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Sunlight-initiated photochemistry plays an important role in carbon and trace gases cycling in natural waters. We for the first time confirm that photochemical degradation of dissolved organic carbon (DOC) can produce methane, which is the second most important greenhouse gas in the atmosphere. Dissolved oxygen greatly affects the rates of DOC photodegradation and methane photoproduction. The implications of methane photoproduction for methane cycling in modern and ancient oceans are discussed.
J.-C. Miquel, B. Gasser, J. Martín, C. Marec, M. Babin, L. Fortier, and A. Forest
Biogeosciences, 12, 5103–5117, https://doi.org/10.5194/bg-12-5103-2015, https://doi.org/10.5194/bg-12-5103-2015, 2015
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POC fluxes obtained in the Eastern Beaufort Sea in August 2009 from drifting sediment traps were low (1-15 mg C m-2d-1), compared to long-term data which show higher but variable fluxes (10-40 mg C m-2d-1).
Composition of sinking particles, especially faecal pellets, highlighted the role of the zooplankton community and its trophic structure in the transition of carbon from the productive surface zone to the deep ocean. Carbon flux at this season results from a heterotrophic driven ecosystem.
D. Doxaran, E. Devred, and M. Babin
Biogeosciences, 12, 3551–3565, https://doi.org/10.5194/bg-12-3551-2015, https://doi.org/10.5194/bg-12-3551-2015, 2015
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Eleven years (2003-2013) of satellite data were processed to observe the variations in suspended particulate matter concentrations at the mouth of the Mackenzie River and estimate the fluxes exported into the Canadian Arctic Ocean.
Results show that these concentrations at the river mouth, in the delta zone and in the river plume have increased by 46%, 71% and 33%, respectively, since 2003. This corresponds to a more than 50% increase in particulate export from the river into the Beaufort Sea.
V. Le Fouest, M. Manizza, B. Tremblay, and M. Babin
Biogeosciences, 12, 3385–3402, https://doi.org/10.5194/bg-12-3385-2015, https://doi.org/10.5194/bg-12-3385-2015, 2015
P. Coupel, A. Matsuoka, D. Ruiz-Pino, M. Gosselin, D. Marie, J.-É. Tremblay, and M. Babin
Biogeosciences, 12, 991–1006, https://doi.org/10.5194/bg-12-991-2015, https://doi.org/10.5194/bg-12-991-2015, 2015
J.-É. Tremblay, P. Raimbault, N. Garcia, B. Lansard, M. Babin, and J. Gagnon
Biogeosciences, 11, 4853–4868, https://doi.org/10.5194/bg-11-4853-2014, https://doi.org/10.5194/bg-11-4853-2014, 2014
A. Matsuoka, M. Babin, D. Doxaran, S. B. Hooker, B. G. Mitchell, S. Bélanger, and A. Bricaud
Biogeosciences, 11, 3131–3147, https://doi.org/10.5194/bg-11-3131-2014, https://doi.org/10.5194/bg-11-3131-2014, 2014
A. Forest, P. Coupel, B. Else, S. Nahavandian, B. Lansard, P. Raimbault, T. Papakyriakou, Y. Gratton, L. Fortier, J.-É. Tremblay, and M. Babin
Biogeosciences, 11, 2827–2856, https://doi.org/10.5194/bg-11-2827-2014, https://doi.org/10.5194/bg-11-2827-2014, 2014
A. Taalba, H. Xie, M. G. Scarratt, S. Bélanger, and M. Levasseur
Biogeosciences, 10, 6793–6806, https://doi.org/10.5194/bg-10-6793-2013, https://doi.org/10.5194/bg-10-6793-2013, 2013
S. Bélanger, S. A. Cizmeli, J. Ehn, A. Matsuoka, D. Doxaran, S. Hooker, and M. Babin
Biogeosciences, 10, 6433–6452, https://doi.org/10.5194/bg-10-6433-2013, https://doi.org/10.5194/bg-10-6433-2013, 2013
D. Antoine, S. B. Hooker, S. Bélanger, A. Matsuoka, and M. Babin
Biogeosciences, 10, 4493–4509, https://doi.org/10.5194/bg-10-4493-2013, https://doi.org/10.5194/bg-10-4493-2013, 2013
M. Ardyna, M. Babin, M. Gosselin, E. Devred, S. Bélanger, A. Matsuoka, and J.-É. Tremblay
Biogeosciences, 10, 4383–4404, https://doi.org/10.5194/bg-10-4383-2013, https://doi.org/10.5194/bg-10-4383-2013, 2013
S. Bélanger, M. Babin, and J.-É. Tremblay
Biogeosciences, 10, 4087–4101, https://doi.org/10.5194/bg-10-4087-2013, https://doi.org/10.5194/bg-10-4087-2013, 2013
G. Song, H. Xie, S. Bélanger, E. Leymarie, and M. Babin
Biogeosciences, 10, 3731–3748, https://doi.org/10.5194/bg-10-3731-2013, https://doi.org/10.5194/bg-10-3731-2013, 2013
V. Le Fouest, M. Babin, and J.-É. Tremblay
Biogeosciences, 10, 3661–3677, https://doi.org/10.5194/bg-10-3661-2013, https://doi.org/10.5194/bg-10-3661-2013, 2013
Y. Huot, M. Babin, and F. Bruyant
Biogeosciences, 10, 3445–3454, https://doi.org/10.5194/bg-10-3445-2013, https://doi.org/10.5194/bg-10-3445-2013, 2013
A. Forest, M. Babin, L. Stemmann, M. Picheral, M. Sampei, L. Fortier, Y. Gratton, S. Bélanger, E. Devred, J. Sahlin, D. Doxaran, F. Joux, E. Ortega-Retuerta, J. Martín, W. H. Jeffrey, B. Gasser, and J. Carlos Miquel
Biogeosciences, 10, 2833–2866, https://doi.org/10.5194/bg-10-2833-2013, https://doi.org/10.5194/bg-10-2833-2013, 2013
E. Ortega-Retuerta, F. Joux, W. H. Jeffrey, and J. F. Ghiglione
Biogeosciences, 10, 2747–2759, https://doi.org/10.5194/bg-10-2747-2013, https://doi.org/10.5194/bg-10-2747-2013, 2013
A. Matsuoka, S. B. Hooker, A. Bricaud, B. Gentili, and M. Babin
Biogeosciences, 10, 917–927, https://doi.org/10.5194/bg-10-917-2013, https://doi.org/10.5194/bg-10-917-2013, 2013
Related subject area
Biogeochemistry: Modelling, Aquatic
Mixing, spatial resolution and argon saturation in a suite of coupled general ocean circulation biogeochemical models off Mauritania
Efficiency metrics for ocean alkalinity enhancements under responsive and prescribed atmospheric pCO2 conditions
Changes in Arctic Ocean plankton community structure and trophic dynamics on seasonal to interannual timescales
Global impact of benthic denitrification on marine N2 fixation and primary production simulated by a variable-stoichiometry Earth system model
Modeling the contribution of micronekton diel vertical migrations to carbon export in the mesopelagic zone
Killing the predator: impacts of highest-predator mortality on the global-ocean ecosystem structure
Hydrodynamic and biochemical impacts on the development of hypoxia in the Louisiana–Texas shelf – Part 1: roles of nutrient limitation and plankton community
Validation of the coupled physical–biogeochemical ocean model NEMO–SCOBI for the North Sea–Baltic Sea system
Investigating ecosystem connections in the shelf sea environment using complex networks
Seasonal and interannual variability of the pelagic ecosystem and of the organic carbon budget in the Rhodes Gyre (eastern Mediterranean): influence of winter mixing
How much do bacterial growth properties and biodegradable dissolved organic matter control water quality at low flow?
Methane emissions from Arctic landscapes during 2000–2015: an analysis with land and lake biogeochemistry models
Including filter-feeding gelatinous macrozooplankton in a global marine biogeochemical model: model–data comparison and impact on the ocean carbon cycle
Riverine impact on future projections of marine primary production and carbon uptake
Subsurface oxygen maximum in oligotrophic marine ecosystems: mapping the interaction between physical and biogeochemical processes
Quantifying biological carbon pump pathways with a data-constrained mechanistic model ensemble approach
Assessing the spatial and temporal variability of methylmercury biogeochemistry and bioaccumulation in the Mediterranean Sea with a coupled 3D model
Hydrodynamic and biochemical impacts on the development of hypoxia in the Louisiana–Texas shelf – Part 2: statistical modeling and hypoxia prediction
Modelling the effects of benthic fauna on carbon, nitrogen and phosphorus dynamics in the Baltic Sea
Improved prediction of dimethyl sulfide (DMS) distributions in the northeast subarctic Pacific using machine-learning algorithms
Nutrient transport and transformation in macrotidal estuaries of the French Atlantic coast: a modeling approach using the Carbon-Generic Estuarine Model
A modelling study of temporal and spatial pCO2 variability on the biologically active and temperature-dominated Scotian Shelf
Modeling the marine chromium cycle: new constraints on global-scale processes
New insights into large-scale trends of apparent organic matter reactivity in marine sediments and patterns of benthic carbon transformation
Evaluation of ocean dimethylsulfide concentration and emission in CMIP6 models
Zooplankton mortality effects on the plankton community of the northern Humboldt Current System: sensitivity of a regional biogeochemical model
Multi-compartment kinetic–allometric (MCKA) model of radionuclide bioaccumulation in marine fish
Impact of bottom trawling on sediment biogeochemistry: a modelling approach
Cyanobacteria blooms in the Baltic Sea: a review of models and facts
Arctic Ocean acidification over the 21st century co-driven by anthropogenic carbon increases and freshening in the CMIP6 model ensemble
Modeling silicate–nitrate–ammonium co-limitation of algal growth and the importance of bacterial remineralization based on an experimental Arctic coastal spring bloom culture study
Role of jellyfish in the plankton ecosystem revealed using a global ocean biogeochemical model
Extreme event waves in marine ecosystems: an application to Mediterranean Sea surface chlorophyll
Use of optical absorption indices to assess seasonal variability of dissolved organic matter in Amazon floodplain lakes
The role of sediment-induced light attenuation on primary production during Hurricane Gustav (2008)
Quantifying spatiotemporal variability in zooplankton dynamics in the Gulf of Mexico with a physical–biogeochemical model
One size fits all? Calibrating an ocean biogeochemistry model for different circulations
Assessing the temporal scale of deep-sea mining impacts on sediment biogeochemistry
Seasonal patterns of surface inorganic carbon system variables in the Gulf of Mexico inferred from a regional high-resolution ocean biogeochemical model
Oxygen dynamics and evaluation of the single-station diel oxygen model across contrasting geologies
Oceanic CO2 outgassing and biological production hotspots induced by pre-industrial river loads of nutrients and carbon in a global modeling approach
Global trends in marine nitrate N isotopes from observations and a neural network-based climatology
Merging bio-optical data from Biogeochemical-Argo floats and models in marine biogeochemistry
Model constraints on the anthropogenic carbon budget of the Arctic Ocean
Modeling oceanic nitrate and nitrite concentrations and isotopes using a 3-D inverse N cycle model
Biogeochemical response of the Mediterranean Sea to the transient SRES-A2 climate change scenario
Modelling the biogeochemical effects of heterotrophic and autotrophic N2 fixation in the Gulf of Aqaba (Israel), Red Sea
A perturbed biogeochemistry model ensemble evaluated against in situ and satellite observations
Diazotrophy as the main driver of the oligotrophy gradient in the western tropical South Pacific Ocean: results from a one-dimensional biogeochemical–physical coupled model
Causes of simulated long-term changes in phytoplankton biomass in the Baltic proper: a wavelet analysis
Heiner Dietze and Ulrike Löptien
Biogeosciences, 22, 1215–1236, https://doi.org/10.5194/bg-22-1215-2025, https://doi.org/10.5194/bg-22-1215-2025, 2025
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We introduce argon saturation as a prognostic variable in a suite of coupled general ocean circulation biogeochemical models off Mauritania. Our results indicate that the effect of increasing the spatial horizontal model resolutions from 12 km to 1.5 km leads to changes comparable to other infamous spurious effects of state-of-the-art numerical advection numerics.
Michael D. Tyka
Biogeosciences, 22, 341–353, https://doi.org/10.5194/bg-22-341-2025, https://doi.org/10.5194/bg-22-341-2025, 2025
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Marine CO2 removal (mCDR) is a promising technology for removing legacy emissions from the atmosphere. Its indirect nature makes it difficult to assess experimentally; instead one relies heavily on simulation. Many past papers have treated the atmosphere as non-responsive to the intervention studied. We show that even under these simplified assumptions, the increase in ocean CO2 inventory is equal to the equivalent quantity of direct CO2 removals occurring over time, in a realistic atmosphere.
Gabriela Negrete-García, Jessica Y. Luo, Colleen M. Petrik, Manfredi Manizza, and Andrew D. Barton
Biogeosciences, 21, 4951–4973, https://doi.org/10.5194/bg-21-4951-2024, https://doi.org/10.5194/bg-21-4951-2024, 2024
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The Arctic Ocean experiences significant seasonal and year-to-year changes, impacting marine plankton populations. Using a plankton community model, we studied these effects on plankton communities and their influence on fish production. Our findings revealed earlier plankton blooms, shifts towards more carnivorous zooplankton, and increased fishery potential during summertime, especially in warmer years with less ice, highlighting the delicate balance of Arctic ecosystems.
Na Li, Christopher J. Somes, Angela Landolfi, Chia-Te Chien, Markus Pahlow, and Andreas Oschlies
Biogeosciences, 21, 4361–4380, https://doi.org/10.5194/bg-21-4361-2024, https://doi.org/10.5194/bg-21-4361-2024, 2024
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N is a crucial nutrient that limits phytoplankton growth in large ocean areas. The amount of oceanic N is governed by the balance of N2 fixation and denitrification. Here we incorporate benthic denitrification into an Earth system model with variable particulate stoichiometry. Our model compares better to the observed surface nutrient distributions, marine N2 fixation, and primary production. Benthic denitrification plays an important role in marine N and C cycling and hence the global climate.
Hélène Thibault, Frédéric Ménard, Jeanne Abitbol-Spangaro, Jean-Christophe Poggiale, and Séverine Martini
EGUsphere, https://doi.org/10.5194/egusphere-2024-2074, https://doi.org/10.5194/egusphere-2024-2074, 2024
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Micronekton significantly impacts oceanic carbon transport, yet often overlooked. Using a trait-based model, we simulated their diel vertical migrations and carbon production, revealing size, taxonomy, light and primary production as key factors. In temperate regions, micronekton influenced greatly the transport efficiency in summer. Future research must focus on micronekton metabolism and dynamics, considering global warming and their potential exploitation.
David Talmy, Eric Carr, Harshana Rajakaruna, Selina Våge, and Anne Willem Omta
Biogeosciences, 21, 2493–2507, https://doi.org/10.5194/bg-21-2493-2024, https://doi.org/10.5194/bg-21-2493-2024, 2024
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The structure of plankton communities is central to global cycles of carbon, nitrogen, and other elements. This study explored the sensitivity of different assumptions about highest-predator mortality in ecosystem models with contrasting food web structures. In the context of environmental data, we find support for models assuming a density-dependent mortality of the highest predator, irrespective of assumed food web structure.
Yanda Ou and Z. George Xue
Biogeosciences, 21, 2385–2424, https://doi.org/10.5194/bg-21-2385-2024, https://doi.org/10.5194/bg-21-2385-2024, 2024
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Developed for the Gulf of Mexico (2006–2020), a 3D hydrodynamic–biogeochemical model validated against in situ data reveals the impact of nutrients and plankton diversity on dissolved oxygen dynamics. It highlights the role of physical processes, sediment oxygen consumption, and nutrient distribution in shaping bottom oxygen levels and hypoxia. The model underscores the importance of complex plankton interactions for understanding primary production and hypoxia evolution.
Itzel Ruvalcaba Baroni, Elin Almroth-Rosell, Lars Axell, Sam T. Fredriksson, Jenny Hieronymus, Magnus Hieronymus, Sandra-Esther Brunnabend, Matthias Gröger, Ivan Kuznetsov, Filippa Fransner, Robinson Hordoir, Saeed Falahat, and Lars Arneborg
Biogeosciences, 21, 2087–2132, https://doi.org/10.5194/bg-21-2087-2024, https://doi.org/10.5194/bg-21-2087-2024, 2024
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The health of the Baltic and North seas is threatened due to high anthropogenic pressure; thus, different methods to assess the status of these regions are urgently needed. Here, we validated a novel model simulating the ocean dynamics and biogeochemistry of the Baltic and North seas that can be used to create future climate and nutrient scenarios, contribute to European initiatives on de-eutrophication, and provide water quality advice and support on nutrient load reductions for both seas.
Ieuan Higgs, Jozef Skákala, Ross Bannister, Alberto Carrassi, and Stefano Ciavatta
Biogeosciences, 21, 731–746, https://doi.org/10.5194/bg-21-731-2024, https://doi.org/10.5194/bg-21-731-2024, 2024
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A complex network is a way of representing which parts of a system are connected to other parts. We have constructed a complex network based on an ecosystem–ocean model. From this, we can identify patterns in the structure and areas of similar behaviour. This can help to understand how natural, or human-made, changes will affect the shelf sea ecosystem, and it can be used in multiple future applications such as improving modelling, data assimilation, or machine learning.
Joelle Habib, Caroline Ulses, Claude Estournel, Milad Fakhri, Patrick Marsaleix, Mireille Pujo-Pay, Marine Fourrier, Laurent Coppola, Alexandre Mignot, Laurent Mortier, and Pascal Conan
Biogeosciences, 20, 3203–3228, https://doi.org/10.5194/bg-20-3203-2023, https://doi.org/10.5194/bg-20-3203-2023, 2023
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The Rhodes Gyre, eastern Mediterranean Sea, is the main Levantine Intermediate Water formation site. In this study, we use a 3D physical–biogeochemical model to investigate the seasonal and interannual variability of organic carbon dynamics in the gyre. Our results show its autotrophic nature and its high interannual variability, with enhanced primary production, downward exports, and onward exports to the surrounding regions during years marked by intense heat losses and deep mixed layers.
Masihullah Hasanyar, Thomas Romary, Shuaitao Wang, and Nicolas Flipo
Biogeosciences, 20, 1621–1633, https://doi.org/10.5194/bg-20-1621-2023, https://doi.org/10.5194/bg-20-1621-2023, 2023
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The results of this study indicate that biodegradable dissolved organic matter is responsible for oxygen depletion at low flow during summer seasons when heterotrophic bacterial activity is so intense. Therefore, the dissolved organic matter must be well measured in the water monitoring networks in order to have more accurate water quality models. It also advocates for high-frequency data collection for better quantification of the uncertainties related to organic matter.
Xiangyu Liu and Qianlai Zhuang
Biogeosciences, 20, 1181–1193, https://doi.org/10.5194/bg-20-1181-2023, https://doi.org/10.5194/bg-20-1181-2023, 2023
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We are among the first to quantify methane emissions from inland water system in the pan-Arctic. The total CH4 emissions are 36.46 Tg CH4 yr−1 during 2000–2015, of which wetlands and lakes were 21.69 Tg yr−1 and 14.76 Tg yr−1, respectively. By using two non-overlap area change datasets with land and lake models, our simulation avoids small lakes being counted twice as both lake and wetland, and it narrows the gap between two different methods used to quantify regional CH4 emissions.
Corentin Clerc, Laurent Bopp, Fabio Benedetti, Meike Vogt, and Olivier Aumont
Biogeosciences, 20, 869–895, https://doi.org/10.5194/bg-20-869-2023, https://doi.org/10.5194/bg-20-869-2023, 2023
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Gelatinous zooplankton play a key role in the ocean carbon cycle. In particular, pelagic tunicates, which feed on a wide size range of prey, produce rapidly sinking detritus. Thus, they efficiently transfer carbon from the surface to the depths. Consequently, we added these organisms to a marine biogeochemical model (PISCES-v2) and evaluated their impact on the global carbon cycle. We found that they contribute significantly to carbon export and that this contribution increases with depth.
Shuang Gao, Jörg Schwinger, Jerry Tjiputra, Ingo Bethke, Jens Hartmann, Emilio Mayorga, and Christoph Heinze
Biogeosciences, 20, 93–119, https://doi.org/10.5194/bg-20-93-2023, https://doi.org/10.5194/bg-20-93-2023, 2023
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We assess the impact of riverine nutrients and carbon (C) on projected marine primary production (PP) and C uptake using a fully coupled Earth system model. Riverine inputs alleviate nutrient limitation and thus lessen the projected PP decline by up to 0.7 Pg C yr−1 globally. The effect of increased riverine C may be larger than the effect of nutrient inputs in the future on the projected ocean C uptake, while in the historical period increased nutrient inputs are considered the largest driver.
Valeria Di Biagio, Stefano Salon, Laura Feudale, and Gianpiero Cossarini
Biogeosciences, 19, 5553–5574, https://doi.org/10.5194/bg-19-5553-2022, https://doi.org/10.5194/bg-19-5553-2022, 2022
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The amount of dissolved oxygen in the ocean is the result of interacting physical and biological processes. Oxygen vertical profiles show a subsurface maximum in a large part of the ocean. We used a numerical model to map this subsurface maximum in the Mediterranean Sea and to link local differences in its properties to the driving processes. This emerging feature can help the marine ecosystem functioning to be better understood, also under the impacts of climate change.
Michael R. Stukel, Moira Décima, and Michael R. Landry
Biogeosciences, 19, 3595–3624, https://doi.org/10.5194/bg-19-3595-2022, https://doi.org/10.5194/bg-19-3595-2022, 2022
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The biological carbon pump (BCP) transports carbon into the deep ocean, leading to long-term marine carbon sequestration. It is driven by many physical, chemical, and ecological processes. We developed a model of the BCP constrained using data from 11 cruises in 4 different ocean regions. Our results show that sinking particles and vertical mixing are more important than transport mediated by vertically migrating zooplankton. They also highlight the uncertainty in current estimates of the BCP.
Ginevra Rosati, Donata Canu, Paolo Lazzari, and Cosimo Solidoro
Biogeosciences, 19, 3663–3682, https://doi.org/10.5194/bg-19-3663-2022, https://doi.org/10.5194/bg-19-3663-2022, 2022
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Methylmercury (MeHg) is produced and bioaccumulated in marine food webs, posing concerns for human exposure through seafood consumption. We modeled and analyzed the fate of MeHg in the lower food web of the Mediterranean Sea. The modeled spatial–temporal distribution of plankton bioaccumulation differs from the distribution of MeHg in surface water. We also show that MeHg exposure concentrations in temperate waters can be lowered by winter convection, which is declining due to climate change.
Yanda Ou, Bin Li, and Z. George Xue
Biogeosciences, 19, 3575–3593, https://doi.org/10.5194/bg-19-3575-2022, https://doi.org/10.5194/bg-19-3575-2022, 2022
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Over the past decades, the Louisiana–Texas shelf has been suffering recurring hypoxia (dissolved oxygen < 2 mg L−1). We developed a novel prediction model using state-of-the-art statistical techniques based on physical and biogeochemical data provided by a numerical model. The model can capture both the magnitude and onset of the annual hypoxia events. This study also demonstrates that it is possible to use a global model forecast to predict regional ocean water quality.
Eva Ehrnsten, Oleg Pavlovitch Savchuk, and Bo Gustav Gustafsson
Biogeosciences, 19, 3337–3367, https://doi.org/10.5194/bg-19-3337-2022, https://doi.org/10.5194/bg-19-3337-2022, 2022
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We studied the effects of benthic fauna, animals living on or in the seafloor, on the biogeochemical cycles of carbon, nitrogen and phosphorus using a model of the Baltic Sea ecosystem. By eating and excreting, the animals transform a large part of organic matter sinking to the seafloor into inorganic forms, which fuel plankton blooms. Simultaneously, when they move around (bioturbate), phosphorus is bound in the sediments. This reduces nitrogen-fixing plankton blooms and oxygen depletion.
Brandon J. McNabb and Philippe D. Tortell
Biogeosciences, 19, 1705–1721, https://doi.org/10.5194/bg-19-1705-2022, https://doi.org/10.5194/bg-19-1705-2022, 2022
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The trace gas dimethyl sulfide (DMS) plays an important role in the ocean sulfur cycle and can also influence Earth’s climate. Our study used two statistical methods to predict surface ocean concentrations and rates of sea–air exchange of DMS in the northeast subarctic Pacific. Our results show improved predictive power over previous approaches and suggest that nutrient availability, light-dependent processes, and physical mixing may be important controls on DMS in this region.
Xi Wei, Josette Garnier, Vincent Thieu, Paul Passy, Romain Le Gendre, Gilles Billen, Maia Akopian, and Goulven Gildas Laruelle
Biogeosciences, 19, 931–955, https://doi.org/10.5194/bg-19-931-2022, https://doi.org/10.5194/bg-19-931-2022, 2022
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Estuaries are key reactive ecosystems along the land–ocean aquatic continuum and are often strongly impacted by anthropogenic activities. We calculated nutrient in and out fluxes by using a 1-D transient model for seven estuaries along the French Atlantic coast. Among these, large estuaries with high residence times showed higher retention rates than medium and small ones. All reveal coastal eutrophication due to the excess of diffused nitrogen from intensive agricultural river basins.
Krysten Rutherford, Katja Fennel, Dariia Atamanchuk, Douglas Wallace, and Helmuth Thomas
Biogeosciences, 18, 6271–6286, https://doi.org/10.5194/bg-18-6271-2021, https://doi.org/10.5194/bg-18-6271-2021, 2021
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Using a regional model of the northwestern North Atlantic shelves in combination with a surface water time series and repeat transect observations, we investigate surface CO2 variability on the Scotian Shelf. The study highlights a strong seasonal cycle in shelf-wide pCO2 and spatial variability throughout the summer months driven by physical events. The simulated net flux of CO2 on the Scotian Shelf is out of the ocean, deviating from the global air–sea CO2 flux trend in continental shelves.
Frerk Pöppelmeier, David J. Janssen, Samuel L. Jaccard, and Thomas F. Stocker
Biogeosciences, 18, 5447–5463, https://doi.org/10.5194/bg-18-5447-2021, https://doi.org/10.5194/bg-18-5447-2021, 2021
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Chromium (Cr) is a redox-sensitive element that holds promise as a tracer of ocean oxygenation and biological activity. We here implemented the oxidation states Cr(III) and Cr(VI) in the Bern3D model to investigate the processes that shape the global Cr distribution. We find a Cr ocean residence time of 5–8 kyr and that the benthic source dominates the tracer budget. Further, regional model–data mismatches suggest strong Cr removal in oxygen minimum zones and a spatially variable benthic source.
Felipe S. Freitas, Philip A. Pika, Sabine Kasten, Bo B. Jørgensen, Jens Rassmann, Christophe Rabouille, Shaun Thomas, Henrik Sass, Richard D. Pancost, and Sandra Arndt
Biogeosciences, 18, 4651–4679, https://doi.org/10.5194/bg-18-4651-2021, https://doi.org/10.5194/bg-18-4651-2021, 2021
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It remains challenging to fully understand what controls carbon burial in marine sediments globally. Thus, we use a model–data approach to identify patterns of organic matter reactivity at the seafloor across distinct environmental conditions. Our findings support the notion that organic matter reactivity is a dynamic ecosystem property and strongly influences biogeochemical cycling and exchange. Our results are essential to improve predictions of future changes in carbon cycling and climate.
Josué Bock, Martine Michou, Pierre Nabat, Manabu Abe, Jane P. Mulcahy, Dirk J. L. Olivié, Jörg Schwinger, Parvadha Suntharalingam, Jerry Tjiputra, Marco van Hulten, Michio Watanabe, Andrew Yool, and Roland Séférian
Biogeosciences, 18, 3823–3860, https://doi.org/10.5194/bg-18-3823-2021, https://doi.org/10.5194/bg-18-3823-2021, 2021
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In this study we analyse surface ocean dimethylsulfide (DMS) concentration and flux to the atmosphere from four CMIP6 Earth system models over the historical and ssp585 simulations.
Our analysis of contemporary (1980–2009) climatologies shows that models better reproduce observations in mid to high latitudes. The models disagree on the sign of the trend of the global DMS flux from 1980 onwards. The models agree on a positive trend of DMS over polar latitudes following sea-ice retreat dynamics.
Mariana Hill Cruz, Iris Kriest, Yonss Saranga José, Rainer Kiko, Helena Hauss, and Andreas Oschlies
Biogeosciences, 18, 2891–2916, https://doi.org/10.5194/bg-18-2891-2021, https://doi.org/10.5194/bg-18-2891-2021, 2021
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In this study we use a regional biogeochemical model of the eastern tropical South Pacific Ocean to implicitly simulate the effect that fluctuations in populations of small pelagic fish, such as anchovy and sardine, may have on the biogeochemistry of the northern Humboldt Current System. To do so, we vary the zooplankton mortality in the model, under the assumption that these fishes eat zooplankton. We also evaluate the model for the first time against mesozooplankton observations.
Roman Bezhenar, Kyeong Ok Kim, Vladimir Maderich, Govert de With, and Kyung Tae Jung
Biogeosciences, 18, 2591–2607, https://doi.org/10.5194/bg-18-2591-2021, https://doi.org/10.5194/bg-18-2591-2021, 2021
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A new approach to predicting the accumulation of radionuclides in fish was developed by taking into account heterogeneity of distribution of contamination in the organism and dependence of metabolic process rates on the fish mass. Predicted concentrations of radionuclides in fish agreed well with the laboratory and field measurements. The model with the defined generic parameters could be used in marine environments without local calibration, which is important for emergency decision support.
Emil De Borger, Justin Tiano, Ulrike Braeckman, Adriaan D. Rijnsdorp, and Karline Soetaert
Biogeosciences, 18, 2539–2557, https://doi.org/10.5194/bg-18-2539-2021, https://doi.org/10.5194/bg-18-2539-2021, 2021
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Bottom trawling alters benthic mineralization: the recycling of organic material (OM) to free nutrients. To better understand how this occurs, trawling events were added to a model of seafloor OM recycling. Results show that bottom trawling reduces OM and free nutrients in sediments through direct removal thereof and of fauna which transport OM to deeper sediment layers protected from fishing. Our results support temporospatial trawl restrictions to allow key sediment functions to recover.
Britta Munkes, Ulrike Löptien, and Heiner Dietze
Biogeosciences, 18, 2347–2378, https://doi.org/10.5194/bg-18-2347-2021, https://doi.org/10.5194/bg-18-2347-2021, 2021
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Cyanobacteria blooms can strongly aggravate eutrophication problems of water bodies. Their controls are, however, not comprehensively understood, which impedes effective management and protection plans. Here we review the current understanding of cyanobacteria blooms. Juxtaposition of respective field and laboratory studies with state-of-the-art mathematical models reveals substantial uncertainty associated with nutrient demands, grazing, and death of cyanobacteria.
Jens Terhaar, Olivier Torres, Timothée Bourgeois, and Lester Kwiatkowski
Biogeosciences, 18, 2221–2240, https://doi.org/10.5194/bg-18-2221-2021, https://doi.org/10.5194/bg-18-2221-2021, 2021
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The uptake of carbon, emitted as a result of human activities, results in ocean acidification. We analyse 21st-century projections of acidification in the Arctic Ocean, a region of particular vulnerability, using the latest generation of Earth system models. In this new generation of models there is a large decrease in the uncertainty associated with projections of Arctic Ocean acidification, with freshening playing a greater role in driving acidification than previously simulated.
Tobias R. Vonnahme, Martial Leroy, Silke Thoms, Dick van Oevelen, H. Rodger Harvey, Svein Kristiansen, Rolf Gradinger, Ulrike Dietrich, and Christoph Völker
Biogeosciences, 18, 1719–1747, https://doi.org/10.5194/bg-18-1719-2021, https://doi.org/10.5194/bg-18-1719-2021, 2021
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Diatoms are crucial for Arctic coastal spring blooms, and their growth is controlled by nutrients and light. At the end of the bloom, inorganic nitrogen or silicon can be limiting, but nitrogen can be regenerated by bacteria, extending the algal growth phase. Modeling these multi-nutrient dynamics and the role of bacteria is challenging yet crucial for accurate modeling. We recreated spring bloom dynamics in a cultivation experiment and developed a representative dynamic model.
Rebecca M. Wright, Corinne Le Quéré, Erik Buitenhuis, Sophie Pitois, and Mark J. Gibbons
Biogeosciences, 18, 1291–1320, https://doi.org/10.5194/bg-18-1291-2021, https://doi.org/10.5194/bg-18-1291-2021, 2021
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Jellyfish have been included in a global ocean biogeochemical model for the first time. The global mean jellyfish biomass in the model is within the observational range. Jellyfish are found to play an important role in the plankton ecosystem, influencing community structure, spatiotemporal dynamics and biomass. The model raises questions about the sensitivity of the zooplankton community to jellyfish mortality and the interactions between macrozooplankton and jellyfish.
Valeria Di Biagio, Gianpiero Cossarini, Stefano Salon, and Cosimo Solidoro
Biogeosciences, 17, 5967–5988, https://doi.org/10.5194/bg-17-5967-2020, https://doi.org/10.5194/bg-17-5967-2020, 2020
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Events that influence the functioning of the Earth’s ecosystems are of interest in relation to a changing climate. We propose a method to identify and characterise
wavesof extreme events affecting marine ecosystems for multi-week periods over wide areas. Our method can be applied to suitable ecosystem variables and has been used to describe different kinds of extreme event waves of phytoplankton chlorophyll in the Mediterranean Sea, by analysing the output from a high-resolution model.
Maria Paula da Silva, Lino A. Sander de Carvalho, Evlyn Novo, Daniel S. F. Jorge, and Claudio C. F. Barbosa
Biogeosciences, 17, 5355–5364, https://doi.org/10.5194/bg-17-5355-2020, https://doi.org/10.5194/bg-17-5355-2020, 2020
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In this study, we analyze the seasonal changes in the dissolved organic matter (DOM) quality (based on its optical properties) in four Amazon floodplain lakes. DOM plays a fundamental role in surface water chemistry, controlling metal bioavailability and mobility, and nutrient cycling. The model proposed in our paper highlights the potential to study DOM quality at a wider spatial scale, which may help to better understand the persistence and fate of DOM in the ecosystem.
Zhengchen Zang, Z. George Xue, Kehui Xu, Samuel J. Bentley, Qin Chen, Eurico J. D'Sa, Le Zhang, and Yanda Ou
Biogeosciences, 17, 5043–5055, https://doi.org/10.5194/bg-17-5043-2020, https://doi.org/10.5194/bg-17-5043-2020, 2020
Taylor A. Shropshire, Steven L. Morey, Eric P. Chassignet, Alexandra Bozec, Victoria J. Coles, Michael R. Landry, Rasmus Swalethorp, Glenn Zapfe, and Michael R. Stukel
Biogeosciences, 17, 3385–3407, https://doi.org/10.5194/bg-17-3385-2020, https://doi.org/10.5194/bg-17-3385-2020, 2020
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Zooplankton are the smallest animals in the ocean and important food for fish. Despite their importance, zooplankton have been relatively undersampled. To better understand the zooplankton community in the Gulf of Mexico (GoM), we developed a model to simulate their dynamics. We found that heterotrophic protists are important for supporting mesozooplankton, which are the primary prey of larval fish. The model developed in this study has the potential to improve fisheries management in the GoM.
Iris Kriest, Paul Kähler, Wolfgang Koeve, Karin Kvale, Volkmar Sauerland, and Andreas Oschlies
Biogeosciences, 17, 3057–3082, https://doi.org/10.5194/bg-17-3057-2020, https://doi.org/10.5194/bg-17-3057-2020, 2020
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Constants of global biogeochemical ocean models are often tuned
by handto match observations of nutrients or oxygen. We investigate the effect of this tuning by optimising six constants of a global biogeochemical model, simulated in five different offline circulations. Optimal values for three constants adjust to distinct features of the circulation applied and can afterwards be swapped among the circulations, without losing too much of the model's fit to observed quantities.
Laura Haffert, Matthias Haeckel, Henko de Stigter, and Felix Janssen
Biogeosciences, 17, 2767–2789, https://doi.org/10.5194/bg-17-2767-2020, https://doi.org/10.5194/bg-17-2767-2020, 2020
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Deep-sea mining for polymetallic nodules is expected to have severe environmental impacts. Through prognostic modelling, this study aims to provide a holistic assessment of the biogeochemical recovery after a disturbance event. It was found that the recovery strongly depends on the impact type; e.g. complete removal of the surface sediment reduces seafloor nutrient fluxes over centuries.
Fabian A. Gomez, Rik Wanninkhof, Leticia Barbero, Sang-Ki Lee, and Frank J. Hernandez Jr.
Biogeosciences, 17, 1685–1700, https://doi.org/10.5194/bg-17-1685-2020, https://doi.org/10.5194/bg-17-1685-2020, 2020
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We use a numerical model to infer annual changes of surface carbon chemistry in the Gulf of Mexico (GoM). The main seasonality drivers of partial pressure of carbon dioxide and aragonite saturation state from the model are temperature and river runoff. The GoM basin is a carbon sink in winter–spring and carbon source in summer–fall, but uptake prevails near the Mississippi Delta year-round due to high biological production. Our model results show good correspondence with observational studies.
Simon J. Parker
Biogeosciences, 17, 305–315, https://doi.org/10.5194/bg-17-305-2020, https://doi.org/10.5194/bg-17-305-2020, 2020
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Dissolved oxygen (DO) models typically assume constant ecosystem respiration over the course of a single day. Using a data-driven approach, this research examines this assumption in four streams across two (hydro-)geological types (Chalk and Greensand). Despite hydrogeological equivalence in terms of baseflow index for each hydrogeological pairing, model suitability differed within, rather than across, geology types. This corresponded with associated differences in timings of DO minima.
Fabrice Lacroix, Tatiana Ilyina, and Jens Hartmann
Biogeosciences, 17, 55–88, https://doi.org/10.5194/bg-17-55-2020, https://doi.org/10.5194/bg-17-55-2020, 2020
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Contributions of rivers to the oceanic cycling of carbon have been poorly represented in global models until now. Here, we assess the long–term implications of preindustrial riverine loads in the ocean in a novel framework which estimates the loads through a hierarchy of weathering and land–ocean export models. We investigate their impacts for the oceanic biological production and air–sea carbon flux. Finally, we assess the potential incorporation of the framework in an Earth system model.
Patrick A. Rafter, Aaron Bagnell, Dario Marconi, and Timothy DeVries
Biogeosciences, 16, 2617–2633, https://doi.org/10.5194/bg-16-2617-2019, https://doi.org/10.5194/bg-16-2617-2019, 2019
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The N isotopic composition of nitrate (
nitrate δ15N) is a useful tracer of ocean N cycling and many other ocean processes. Here, we use a global compilation of marine nitrate δ15N as an input, training, and validating dataset for an artificial neural network (a.k.a.,
machine learning) and examine basin-scale trends in marine nitrate δ15N from the surface to the seafloor.
Elena Terzić, Paolo Lazzari, Emanuele Organelli, Cosimo Solidoro, Stefano Salon, Fabrizio D'Ortenzio, and Pascal Conan
Biogeosciences, 16, 2527–2542, https://doi.org/10.5194/bg-16-2527-2019, https://doi.org/10.5194/bg-16-2527-2019, 2019
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Measuring ecosystem properties in the ocean is a hard business. Recent availability of data from Biogeochemical-Argo floats can help make this task easier. Numerical models can integrate these new data in a coherent picture and can be used to investigate the functioning of ecosystem processes. Our new approach merges experimental information and model capabilities to quantitatively demonstrate the importance of light and water vertical mixing for algae dynamics in the Mediterranean Sea.
Jens Terhaar, James C. Orr, Marion Gehlen, Christian Ethé, and Laurent Bopp
Biogeosciences, 16, 2343–2367, https://doi.org/10.5194/bg-16-2343-2019, https://doi.org/10.5194/bg-16-2343-2019, 2019
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A budget of anthropogenic carbon in the Arctic Ocean, the main driver of open-ocean acidification, was constructed for the first time using a high-resolution ocean model. The budget reveals that anthropogenic carbon enters the Arctic Ocean mainly by lateral transport; the air–sea flux plays a minor role. Coarser-resolution versions of the same model, typical of earth system models, store less anthropogenic carbon in the Arctic Ocean and thus underestimate ocean acidification in the Arctic Ocean.
Taylor S. Martin, François Primeau, and Karen L. Casciotti
Biogeosciences, 16, 347–367, https://doi.org/10.5194/bg-16-347-2019, https://doi.org/10.5194/bg-16-347-2019, 2019
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Nitrite is a key intermediate in many nitrogen (N) cycling processes in the ocean, particularly in areas with low oxygen that are hotspots for N loss. We have created a 3-D global N cycle model with nitrite as a tracer. Stable isotopes of N are also included in the model and we are able to model the isotope fractionation associated with each N cycling process. Our model accurately represents N concentrations and isotope distributions in the ocean.
Camille Richon, Jean-Claude Dutay, Laurent Bopp, Briac Le Vu, James C. Orr, Samuel Somot, and François Dulac
Biogeosciences, 16, 135–165, https://doi.org/10.5194/bg-16-135-2019, https://doi.org/10.5194/bg-16-135-2019, 2019
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We evaluate the effects of climate change and biogeochemical forcing evolution on the nutrient and plankton cycles of the Mediterranean Sea for the first time. We use a high-resolution coupled physical and biogeochemical model and perform 120-year transient simulations. The results indicate that changes in external nutrient fluxes and climate change may have synergistic or antagonistic effects on nutrient concentrations, depending on the region and the scenario.
Angela M. Kuhn, Katja Fennel, and Ilana Berman-Frank
Biogeosciences, 15, 7379–7401, https://doi.org/10.5194/bg-15-7379-2018, https://doi.org/10.5194/bg-15-7379-2018, 2018
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Recent studies demonstrate that marine N2 fixation can be carried out without light. However, direct measurements of N2 fixation in dark environments are relatively scarce. This study uses a model that represents biogeochemical cycles at a deep-ocean location in the Gulf of Aqaba (Red Sea). Different model versions are used to test assumptions about N2 fixers. Relaxing light limitation for marine N2 fixers improved the similarity between model results and observations of deep nitrate and oxygen.
Prima Anugerahanti, Shovonlal Roy, and Keith Haines
Biogeosciences, 15, 6685–6711, https://doi.org/10.5194/bg-15-6685-2018, https://doi.org/10.5194/bg-15-6685-2018, 2018
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Minor changes in the biogeochemical model equations lead to major dynamical changes. We assessed this structural sensitivity for the MEDUSA biogeochemical model on chlorophyll and nitrogen concentrations at five oceanographic stations over 10 years, using 1-D ensembles generated by combining different process equations. The ensemble performed better than the default model in most of the stations, suggesting that our approach is useful for generating a probabilistic biogeochemical ensemble model.
Audrey Gimenez, Melika Baklouti, Thibaut Wagener, and Thierry Moutin
Biogeosciences, 15, 6573–6589, https://doi.org/10.5194/bg-15-6573-2018, https://doi.org/10.5194/bg-15-6573-2018, 2018
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During the OUTPACE cruise conducted in the oligotrophic to ultra-oligotrophic region of the western tropical South Pacific, two contrasted regions were sampled in terms of N2 fixation rates, primary production rates and nutrient availability. The aim of this work was to investigate the role of N2 fixation in the differences observed between the two contrasted areas by comparing two simulations only differing by the presence or not of N2 fixers using a 1-D biogeochemical–physical coupled model.
Jenny Hieronymus, Kari Eilola, Magnus Hieronymus, H. E. Markus Meier, Sofia Saraiva, and Bengt Karlson
Biogeosciences, 15, 5113–5129, https://doi.org/10.5194/bg-15-5113-2018, https://doi.org/10.5194/bg-15-5113-2018, 2018
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This paper investigates how phytoplankton concentrations in the Baltic Sea co-vary with nutrient concentrations and other key variables on inter-annual timescales in a model integration over the years 1850–2008. The study area is not only affected by climate change; it has also been subjected to greatly increased nutrient loads due to extensive use of agricultural fertilizers. The results indicate the largest inter-annual coherence of phytoplankton with the limiting nutrient.
Cited articles
Ardyna, M., Gosselin, M., Michel, C., Poulin, M., and Tremblay, J.-É.: Environmental forcing of phytoplankton community structure and function in the Canadian High Arctic: contrasting oligotrophic and eutrophic regions, Mar. Ecol.-Prog. Ser., 442, 37–57, 2011.
Ardyna, M., Babin, M., Gosselin, M., Devred, E., Bélanger, S., Matsuoka, A., and Tremblay, J.-É.: Parameterization of vertical chlorophyll a in the Arctic Ocean: impact of the subsurface chlorophyll maximum on regional, seasonal and annual primary production estimates, Biogeosciences Discuss., 10, 1345–1399, https://doi.org/10.5194/bgd-10-1345-2013, 2013.
Arrigo, K. R. and van Djiken, G. L.: Secular trends in Arctic Ocean net primary production, J. Geophys. Res., 116, C09011, https://doi.org/10.1029/2011JC007151, 2011.
Arrigo, K. R., van Dijken, G., and Pabi, S.: Impact of a shrinking Arctic ice cover on marine primary production, Geophys. Res. Lett., 35, L19603, https://doi.org/10.1029/2008GL035028, 2008.
Balzano, S., Marie, D., Gourvil, P., and Vaulot, D.: Composition of the summer photosynthetic pico and nanoplankton communities in the Beaufort Sea assessed by T-RFLP and sequences of the 18S rRNA gene from flow cytometry sorted samples, ISME J., 6, 1480–1498, https://doi.org/10.1038/ismej.2011.213, 2012.
Bélanger, S., Babin, M., and Tremblay, J.-É.: Increasing cloudiness in Arctic damps the increase in phytoplankton primary production due to sea ice receding, Biogeosciences Discuss., 9, 13987–14012, https://doi.org/10.5194/bgd-9-13987-2012, 2012.
Bienfang, P., Szyper, J., and Laws, E.: Sinking rate and pigment responses to light limitation of a marine diatom: implications to dynamics of chlorophyll maximum layers, Oceanologica Ac. 6, 55–62, 1983.
Booth, B. C. and Horner, R. A.: Microalgae on the Arctic Ocean Section, 1994: species abundance and biomass, Deep-Sea Res Pt. II, 44, 1607–1622, 1997.
Bushaw, K. L., Zepp, R. G., Tarr, M. A., Schultz-Jander, D., Bourbonniere, R. A., Hodson, R. E., Miller, W. L., Bronk, D. A., and Moran, M. A.: Photochemical release of biologically available nitrogen from aquatic dissolved organic matter, Nature, 381, 404–407, 1996.
Campbell, R. G., Sherr, E. B., Ashjian, C. J., Plourde. S., Sherr, B. F., Hill, V., and Stockwell, D. A.: Mesozooplankton prey preference and grazing impact in the western Arctic Ocean, Deep-Sea Res. Pt. II, 56, 1274–1289, https://doi.org/10.1016/j.dsr2.2008.10.027, 2009.
Claustre, H., Morel, A., Babin, M., Cailliau, C., Marie, D., Marty, J.-C., and Vaulot, D.: Variability in particle attenuation and stimulated fluorescence in the tropical and equatorial Pacific: scales, patterns and some biogeochemical implications, J. Geophys. Res., 104, 3401–3422, 1999.
Cloern, J. E., Grenz, C., and Videgar-Lucas, L.: An empirical model of the phytoplankton chlorophyll:carbon ratio – the conversion factor between productivity and growth rate, Limnol. Oceanogr., 40, 1313–1321, 1995.
Comiso, J. C., Parkinson, C. L., Gersten, R., and Stock. L.: Accelerated decline in the Arctic sea ice cover, Geophys. Res. Lett., 35, L01703, https://doi.org/10.1029/2007GL031972, 2008.
Dorch, Q.: The interaction between ammonium and nitrate uptake in phytoplankton, Mar. Ecol.-Prog. Ser., 61, 183–201, 1990.
Doxaran, D., Ehn, J., Bélanger, S., Matsuoka, A., Hooker, S., and Babin, M.: Optical characterisation of suspended particles in the Mackenzie River plume (Canadian Arctic Ocean) and implications for ocean colour remote sensing, Biogeosciences, 9, 3213–3229, https://doi.org/10.5194/bg-9-3213-2012, 2012.
DuRand, M. D., Green, R. E., Sosik, H. M., and Olson, R. J.: Diel variations in Optical properties of Micromonas pusilla (Prasinophyceae), J. Phycol., 38, 1132–1142, 2002.
Edwards, A. M. and Bees, M. A.: Generic dynamics of a simple plankton population model with a non-integer exponent of closure, Chaos Solitons Fractals, 12, 289–300, 2001.
Eiane, K., Aksnes, D. L., Ohman, M. D., Wood, S., and Martinussen, M. B.: Stage-specific mortality of Calanus spp. under different predation regimes, Limnol. Oceanogr., 47, 636–645, 2002.
Fasham, M. J. R., Ducklow, H. W., and McKelvie, S. M.: A nitrogen-based model of plankton dynamics in the oceanic mixed layer, J. Mar. Res., 48, 591–639, 1990.
Forest, A., Galindo, V., Darnis, G., Pineault, S., Lalande, C., Tremblay, J.-É., and Fortier, L.: Carbon biomass, elemental ratios (C : N) and stable isotopic composition (δ13C, δ15N) of dominant calanoid copepods during the winter-to-summer transition in the Amundsen Gulf (Arctic Ocean), J. Plankton. Res., 33, 161–178, 2010.
Forest, A., Stemmann, L., Picheral, M., Burdorf, L., Robert, D., Fortier, L., and Babin, M.: Size distribution of particles and zooplankton across the shelf-basin system in southeast Beaufort Sea: combined results from an Underwater Vision Profiler and vertical net tows, Biogeosciences, 9, 1301–1320, https://doi.org/10.5194/bg-9-1301-2012, 2012.
Geider, R. J., MacIntyre, H. L., and Kana, T. M.: Dynamic model of phytoplankton growth and acclimation: responses of the balanced growth rate and the chlorophyll a: carbon ratio to light, nutrient-limitation and temperature. Mar. Ecol.-Progr. Ser., 148, 187–200, 1997.
Grossart, H.-P. and Ploug, H.: Microbial degradation of organic carbon and nitrogen on diatom aggregates, Limnol. Oceanogr., 46, 267–277, 2001.
Holmes, M. R., Aminot, A., Kerouel, R., Hooker, B. A., and Peterson, J. B.: A simple and precise method for measuring ammonium in marine and freshwater ecosystems, Can. J. Fish Aquat. Sci., 56, 1801–1808, 1999.
Hooker, S. B., Morrow, J. H., and Matsuoka, A.: The 1 % and 1 cm perspective in deriving and validating AOP data products, Biogeosciences Discuss., 9, 9487–9531, https://doi.org/10.5194/bgd-9-9487-2012, 2012.
Huot, Y., Babin, M., and Bruyant, F.: Photosynthetic parameters in the Beaufort Sea in relation to the phytoplankton community structure, Biogeosciences, 10, 3445–3454, https://doi.org/10.5194/bg-10-3445-2013, 2013.
Kahru, M., Brotas, V., Manzano-Sarabia, M., and Mitchell, B. G.: Are phytoplankton blooms occurring earlier in the Arctic? Glob. Change Biol., 17, 1733–1739, https://doi.org/10.1111/j.1365-2486.2010.02312.x, 2011.
Kirchman, D. L., Kiel, R. G., and Wheeler, P. A.: The effect of amino acids on ammonium utilization and regeneration by heterotrophic bacteria in the subarctic Pacific, Deep-Sea Res., 36, 1763–1776, 1989.
Kirchman, D. L., Hill, V., Cottrell, M. T., Gradinger, R., Malmstrom, R. R., and Parker, A.: Standing stocks, production, and respiration of phytoplankton and heterotrophic bacteria in the western Arctic Ocean, Deep-Sea Res. Pt. II, 56, 1237–1248, https://doi.org/10.1016/j.dsr2.2008.10.018, 2009.
Lancelot, C., Becquevort, S., Menon, P., Mathot, S., and Dandois ,J.-M.: Ecological modelling of the planktonic microbial food-web, in Belgian Research Program on the Antarctic, Scientific Results of Phase III (1992–1996): Marine Biogeochemistry and Ecodynamics, edited by: Caschetto. S., 1, 1–78, Fed. Off. for Sci., Tech. and Cult. Affairs, Brussels, 1997.
Le Fouest, V., Postlethwaite, C., Morales Maqueda, M. A., Bélanger, S., and Babin, M.: On the role of tides and strong wind events in promoting summer primary production in the Barents Sea, Cont. Shelf Res., 31, 1869–1879, https://doi.org/10.1016/j.csr.2011.08.013, 2011.
Lehrter, J. C., Pennock, J. R., and McManus. G. B.: Microzooplankton grazing and nitrogen excretion across a surface estuarine-coastal interface, Estuaries, 22, 113–125, 1999.
Li, W. K. W., McLaughlin, F. A., Lovejoy, C., and Carmack, E. C.: Smallest algae thrive as the Arctic Ocean freshens, Science, 326, 539, https://doi.org/10.1126/science.1179798, 2009.
MacIntyre, H. L., Kana, T. M., Anning, T., and Geider, R. J.: Photoacclimation of photosynthesis irradiance response curves and photosynthetic pigments in microalgae and cyanobacteria, J. Phycology, 38, 17–38, 2002.
Martin, J., Tremblay, J.-É., Gagnon, J., Tremblay, G., Lapoussière, A., Jose, C., Poulin, M., Gosselin, M., Gratton, Y., and Michel, C.: Prevalence, structure and properties of subsurface chlorophyll maxima in Canadian Arctic waters, Mar. Ecol.-Prog. Ser., 42, 69–84, https://doi.org/10.3354/meps08666, 2010.
Matrai, P., Vernet, M., and Wassmann, P.: Relating temporal and spatial patterns of DMSP in the Barents Sea to phytoplankton biomass and productivity, J. Marine Syst., 67, 83–101, https://doi.org/10.1016/j.jmarsys.2006.10.001, 2007.
Morel, A.: Optical modeling of the upper ocean in relation to its biogenous matter content (case I waters), J. Geophys. Res., 93, 10749–10768, 1988.
Morell, J. and Corredor, J.: Photomineralization of fluorescent dissolved organic matter in the Orinoco River plume: Estimation of ammonium release, J. Geophys. Res., 106, 16807–16813, https://doi.org/10.1029/1999JC000268, 2001.
Ohman, M. D., Eiane, K., Durbin, E. G., Runge, J. A., and Hirche, H.-J.: A comparative study of Calanus finmarchicus mortality patterns at five localities in the North Atlantic, ICES J. Mar. Sci., 61, 687–697, 2004.
O'Neill, R. V., DeAngelis, D. L., Pastor, J. J., Jackson, B. J., and Post, W. M.: Multiple nutrient limitations in ecological models, Ecol. Model., 46, 147–163, 1989.
Ortega-Retuerta, E., Jeffrey, W. H., Babin, M., Bélanger, S., Benner, R., Marie, D., Matsuoka, A., Raimbault, P., and Joux, F.: Carbon fluxes in the Canadian Arctic: patterns and drivers of bacterial abundance, production and respiration on the Beaufort Sea margin, Biogeosciences, 9, 3679–3692, https://doi.org/10.5194/bg-9-3679-2012, 2012a.
Ortega-Retuerta, E., Jeffrey, W. H., Ghiglione, J.-F., and Joux, F.: Evidence of heterotrophic prokaryotic activity limitation by nitrogen in the Western Arctic Ocean during summer, Polar Biol., 35, 785–794, 2012b.
Osborn, T. R.: Estimates of the local rate of vertical diffusion from dissipation measurements, J. Phys. Oceanogr., 10, 83–89, 1980.
Para, J., Charrière, B., Matsuoka, A., Miller, W. L., Rontani, J. F., and Sempéré, R.: UV/PAR radiation and DOM properties in surface coastal waters of the Canadian shelf of the Beaufort Sea during summer 2009, Biogeosciences, 10, 2761–2774, https://doi.org/10.5194/bg-10-2761-2013, 2013.
Popova, E. E., Yool, A., Coward, A. C., Aksenov, Y. K., Alderson, S. G., de Cuevas, B. A., and Anderson, T. R.: Control of primary production in the Arctic by nutrients and light: insights from a high resolution ocean general circulation model, Biogeosciences, 7, 3569–3591, https://doi.org/10.5194/bg-7-3569-2010, 2010.
Raimbault, P., Slawyk, G., Coste, B, and Fry, J.: Feasibility of using an automated colorimetric procedure for the determination of seawater nitrate in the 0 to 100 nM range: Examples from field and culture, Mar. Biol., 104, 347–351, 1990.
Raimbault, P., Slawyk, G., Boudjellal, B., Coatanoan, C., Conan, P., Coste, B., Garcia, N., Moutin, T., and Pujo-Pay, M.: Carbon and nitrogen uptake and export in the equatorial pacific at 150° W: Evidence of an efficient regenerated production cycle, J. Geophys. Res., 104, 3341–3356, 1999a.
Raimbault, P., Diaz, F., and Boudjellal, B.: Simultaneous determination of particulate forms of carbon, nitrogen and phosphorus collected on filters using a semi-automatic wet-oxidation procedure, Mar. Ecol.-Prog. Ser., 180, 289–295, 1999b.
Redfield, A. C., B. H., Ketchum, and Richards, F. A.: The influence of organisms on the composition of sea water, in: The Sea: Ideas and Observations on Progress in the Study of the Seas, edited by: Hill, M. N., 26–27, Wiley-Intersci., Hoboken, NY, 1973.
Reigstad, M., Wassmann, P., Wexels Riser, C., Øygarden, S., and Rey, F.: Variations in hydrography, nutrients and chlorophyll a in the marginal ice-zone and the central Barents Sea, J. Marine Syst., 38, 9–29, https://doi.org/10.1016/S0924-7963(02)00167-7, 2002.
Riegman, R., Kuipers, B. R., Nooedeloos, A. A. M., and Witte, H. J.: Size-differential control of phytoplankton and the structure of plankton communities, Neth. J. Sea Res., 31, 255–265, 1993.
Roach, P. J.: Computational fluid dynamics, 446 pp., Hermosa, Albuquerque, N. M., 1972.
Sakshaug, E.: Primary and secondary production in the Arctic seas, in: he organic carbon cycle in the Arctic Ocean, edited by: Stein, R. and MacDonald, R. W., T, Springer-Verlag, Berlin, 57–81, 2004.
Sherr, E. B., Sherr, F. B., Wheeler, P. A., and Thompson, K.: Temporal and spatial variation in stocks of autotrophic and heterotrophic microbes in the upper water column of the central Arctic Ocean, Deep-Sea Res. Pt. I, 50, 557–571, https://doi.org/10.1016/S0967-0637(03)00031-1, 2003.
Sibert, V., Zakardjian, B., Gosselin, M., Starr, M., Senneville, S., and LeClainche, Y.: 3D bio-physical model of the sympagic and planktonic productions in the Hudson Bay System, J. Marine Syst. 88, 401–422, https://doi.org/10.1016/j.jmarsys.2011.03.014, 2011.
Slagstad, D., Ellingsen, I. H., and Wassmann, P.: Evaluating primary and secondary production in an Arctic Ocean void of summer sea ice: an experimental simulation approach, Prog. Oceanogr., 90, 117–131. https://doi.org/10.1016/j.pocean.2011.02.009, 2011.
Smith, Jr., W. O., Kelly, H. P., and Vogelin, D.: Phytoplankton sinking rates in the Ross Sea, Antarctic J. US, 151–152, 1991.
Steele, J. H. and Henderson, E. W.: The role of predation in plankton models, J. Plankton Res., 14, 157–172, 1992.
Tank, S. E., Manizza, M., Holmes, R. M., McClelland, J. W., and Peterson, B. J.: The processing and impact of dissolved riverine nitrogen in the Arctic Ocean, Estuar. Coasts, https://doi.org/10.1007/s12237-011-9417-3, 35, 401–415, 2012.
Tremblay, J.-É and Gagnon, J.: The effects of irradiance and nutrient supply on the productivity of Arctic waters: a perspective on climate change, in: Influence of climate change on the changing Arctic and Subarctic conditions, edited by: Nihoul, J. C. J. and Kostianoy, A. G., NATO Science for Peace and Security Series-C: Environmental Security, 73–93, 2009.
Tremblay, J.-É., Legendre, L., Klein, B., and Therriault, J.-C.: Size differential uptake of nitrogen and carbon in a marginal sea (Gulf of St. Lawrence, Canada): Significance of diel periodicity and urea uptake, Deep Sea Res. Pt. II, 47, 489–518, 2000.
Tremblay J.-É., Simpson, K., Martin, J., Miller, L., Gtatton, Y., Barber, D., and Price, N. M.: Vertical stability and the annual dynamics of nutrients and chlorophyll fluorescence in the coastal, southeast Beaufort Sea, J. Geophys. Res., 113, C07S90, https://doi.org/10.1029/2007JC004547, 2008.
Tremblay, J.-É., Raimbault, P., Garcia, N., and Gagnon, J.: Distribution of nutrients and organic carbon, nitrogen and phosphorus in the southeast Beaufort Sea: implications for primary, in preparation, Biogeosciences Discuss, 2013.
Vähätalo, A. V., Aarnos, H., Hoikkala, L., and Lignell, R.: Photochemical transformation of terrestrial dissolved organic matter supports hetero- and autotrophic production in coastal waters, Mar. Ecol.-Prog. Ser., 423, 1–14, https://doi.org/10.3354/meps09010, 2011.
Walsh, J. J., A. Dieterle, D. A., Chen, R., Lenes, J. M., Maslowski, W., Cassano, J. J., Whitledge, T. E., Stockwell, D., Flint, M., Sukhanova, I. N., and Christensen, J.: Trophic cascades and future harmful algal blooms within ice-free Arctic Seas north of Bering Strait: A simulation analysis, Prog. Oceanogr., 91, 312–343, https://doi.org/10.1016/j.pocean.2011.02.001, 2011.
Wassmann, P. and Reigstad, M.: Future Arctic Ocean seasonal ice zones and implications for pelagic-benthic coupling, Oceanography, 24, 220–231, https://doi.org/10.5670/oceanog.2011.74, 2011.
Xie, H., Bélanger, S., Song, G., Benner, R., Taalba, A., Blais, M., Tremblay, J.-É., and Babin, M.: Photoproduction of ammonium in the southeastern Beaufort Sea and its biogeochemical implications, Biogeosciences, 9, 3047–3061, https://doi.org/10.5194/bg-9-3047-2012, 2012.
Zakardjian, B. A. and Prieur, L.: A numerical study of primary production related to vertical mixing with special reference to vertical motions of phytoplankton cells in nutrient and light fields, J. Marine Syst., 5, 267–295, 1994.
Zakardjian, B. and Prieur, L.: Biological and chemical signs of upward motions in permanent geostrophic fronts of the Western Mediterranean, J. Geophys. Res., 103, 27849–27866, https://doi.org/10.1029/98JC01537, 1998.
Zhang, J., Spitz, Y. H., Steele, M., Ashjian, C., Campbell, R., Berline L., and Matrai, P.: Modeling the impact of declining se ice on the Arctic marine planktonic ecosystem, J. Geophys. Res., 115, C10015, https://doi.org/10.1029/2009JC005387, 2010.
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