Articles | Volume 12, issue 5
https://doi.org/10.5194/bg-12-1339-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-12-1339-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| Highlight paper
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04 Mar 2015
Research article | Highlight paper |
| 04 Mar 2015
Evaluation of coral reef carbonate production models at a global scale
N. S. Jones
School of Geographical Sciences, University of Bristol, Bristol BS8 1SS, UK
A. Ridgwell
School of Geographical Sciences, University of Bristol, Bristol BS8 1SS, UK
E. J. Hendy
CORRESPONDING AUTHOR
School of Earth Sciences, University of Bristol, Bristol BS8 1RJ, UK
School of Biological Sciences, University of Bristol, Bristol BS8 1UG, UK
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Keyi Cheng, Andy Ridgwell, and Dalton Hardisty
EGUsphere, https://doi.org/10.5194/egusphere-2024-677, https://doi.org/10.5194/egusphere-2024-677, 2024
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The carbonate paleoredox proxy, I:Ca, has shown its potential in quantifying the redox change in the past ocean, which is of broad importance for understanding climate change and evolution. Here, we tuned and optimized the marine iodine cycling embedded in an Earth System Model “cGENIE” against modern ocean observation, and then tested its ability to estimate I:Ca in the Cretaceous ocean. Our study implies cGENIE’s potential in quantifying redox change in the past using the I:Ca proxy.
Aaron A. Naidoo-Bagwell, Fanny M. Monteiro, Katharine R. Hendry, Scott Burgan, Jamie D. Wilson, Ben A. Ward, Andy Ridgwell, and Daniel J. Conley
Geosci. Model Dev., 17, 1729–1748, https://doi.org/10.5194/gmd-17-1729-2024, https://doi.org/10.5194/gmd-17-1729-2024, 2024
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As an extension to the EcoGEnIE 1.0 Earth system model that features a diverse plankton community, EcoGEnIE 1.1 includes siliceous plankton diatoms and also considers their impact on biogeochemical cycles. With updates to existing nutrient cycles and the introduction of the silicon cycle, we see improved model performance relative to observational data. Through a more functionally diverse plankton community, the new model enables more comprehensive future study of ocean ecology.
Xin Ren, Daniel J. Lunt, Erica Hendy, Anna von der Heydt, Ayako Abe-Ouchi, Bette Otto-Bliesner, Charles J. R. Williams, Christian Stepanek, Chuncheng Guo, Deepak Chandan, Gerrit Lohmann, Julia C. Tindall, Linda E. Sohl, Mark A. Chandler, Masa Kageyama, Michiel L. J. Baatsen, Ning Tan, Qiong Zhang, Ran Feng, Stephen Hunter, Wing-Le Chan, W. Richard Peltier, Xiangyu Li, Youichi Kamae, Zhongshi Zhang, and Alan M. Haywood
Clim. Past, 19, 2053–2077, https://doi.org/10.5194/cp-19-2053-2023, https://doi.org/10.5194/cp-19-2053-2023, 2023
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We investigate the Maritime Continent climate in the mid-Piacenzian warm period and find it is warmer and wetter and the sea surface salinity is lower compared with preindustrial period. Besides, the fresh and warm water transfer through the Maritime Continent was stronger. In order to avoid undue influence from closely related models in the multimodel results, we introduce a new metric, the multi-cluster mean, which could reveal spatial signals that are not captured by the multimodel mean.
Katherine A. Crichton, Andy Ridgwell, Daniel J. Lunt, Alex Farnsworth, and Paul N. Pearson
Clim. Past, 17, 2223–2254, https://doi.org/10.5194/cp-17-2223-2021, https://doi.org/10.5194/cp-17-2223-2021, 2021
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The middle Miocene (15 Ma) was a period of global warmth up to 8 °C warmer than present. We investigate changes in ocean circulation and heat distribution since the middle Miocene and the cooling to the present using the cGENIE Earth system model. We create seven time slices at ~2.5 Myr intervals, constrained with paleo-proxy data, showing a progressive reduction in atmospheric CO2 and a strengthening of the Atlantic Meridional Overturning Circulation.
Yoshiki Kanzaki, Dominik Hülse, Sandra Kirtland Turner, and Andy Ridgwell
Geosci. Model Dev., 14, 5999–6023, https://doi.org/10.5194/gmd-14-5999-2021, https://doi.org/10.5194/gmd-14-5999-2021, 2021
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Sedimentary carbonate plays a central role in regulating Earth’s carbon cycle and climate, and also serves as an archive of paleoenvironments, hosting various trace elements/isotopes. To help obtain
trueenvironmental changes from carbonate records over diagenetic distortion, IMP has been newly developed and has the capability to simulate the diagenesis of multiple carbonate particles and implement different styles of particle mixing by benthos using an adapted transition matrix method.
Jun Shao, Lowell D. Stott, Laurie Menviel, Andy Ridgwell, Malin Ödalen, and Mayhar Mohtadi
Clim. Past, 17, 1507–1521, https://doi.org/10.5194/cp-17-1507-2021, https://doi.org/10.5194/cp-17-1507-2021, 2021
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Planktic and shallow benthic foraminiferal stable carbon isotope
(δ13C) data show a rapid decline during the last deglaciation. This widespread signal was linked to respired carbon released from the deep ocean and its transport through the upper-ocean circulation. Using numerical simulations in which a stronger flux of respired carbon upwells and outcrops in the Southern Ocean, we find that the depleted δ13C signal is transmitted to the rest of the upper ocean through air–sea gas exchange.
Markus Adloff, Andy Ridgwell, Fanny M. Monteiro, Ian J. Parkinson, Alexander J. Dickson, Philip A. E. Pogge von Strandmann, Matthew S. Fantle, and Sarah E. Greene
Geosci. Model Dev., 14, 4187–4223, https://doi.org/10.5194/gmd-14-4187-2021, https://doi.org/10.5194/gmd-14-4187-2021, 2021
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We present the first representation of the trace metals Sr, Os, Li and Ca in a 3D Earth system model (cGENIE). The simulation of marine metal sources (weathering, hydrothermal input) and sinks (deposition) reproduces the observed concentrations and isotopic homogeneity of these metals in the modern ocean. With these new tracers, cGENIE can be used to test hypotheses linking these metal cycles and the cycling of other elements like O and C and simulate their dynamic response to external forcing.
Sebastiaan J. van de Velde, Dominik Hülse, Christopher T. Reinhard, and Andy Ridgwell
Geosci. Model Dev., 14, 2713–2745, https://doi.org/10.5194/gmd-14-2713-2021, https://doi.org/10.5194/gmd-14-2713-2021, 2021
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Biogeochemical interactions between iron and sulfur are central to the long-term biogeochemical evolution of Earth’s oceans. Here, we introduce an iron–sulphur cycle in a model of Earth's oceans. Our analyses show that the results of the model are robust towards parameter choices and that simulated concentrations and reactions are comparable to those observed in ancient ocean analogues (anoxic lakes). Our model represents an important step forward in the study of iron–sulfur cycling.
Katherine A. Crichton, Jamie D. Wilson, Andy Ridgwell, and Paul N. Pearson
Geosci. Model Dev., 14, 125–149, https://doi.org/10.5194/gmd-14-125-2021, https://doi.org/10.5194/gmd-14-125-2021, 2021
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Temperature is a controller of metabolic processes and therefore also a controller of the ocean's biological carbon pump (BCP). We calibrate a temperature-dependent version of the BCP in the cGENIE Earth system model. Since the pre-industrial period, warming has intensified near-surface nutrient recycling, supporting production and largely offsetting stratification-induced surface nutrient limitation. But at the same time less carbon that sinks out of the surface then reaches the deep ocean.
Christopher T. Reinhard, Stephanie L. Olson, Sandra Kirtland Turner, Cecily Pälike, Yoshiki Kanzaki, and Andy Ridgwell
Geosci. Model Dev., 13, 5687–5706, https://doi.org/10.5194/gmd-13-5687-2020, https://doi.org/10.5194/gmd-13-5687-2020, 2020
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We provide documentation and testing of new developments for the oceanic and atmospheric methane cycles in the cGENIE Earth system model. The model is designed to explore Earth's methane cycle across a wide range of timescales and scenarios, in particular assessing the mean climate state and climate perturbations in Earth's deep past. We further document the impact of atmospheric oxygen levels and ocean chemistry on fluxes of methane to the atmosphere from the ocean biosphere.
Malin Ödalen, Jonas Nycander, Andy Ridgwell, Kevin I. C. Oliver, Carlye D. Peterson, and Johan Nilsson
Biogeosciences, 17, 2219–2244, https://doi.org/10.5194/bg-17-2219-2020, https://doi.org/10.5194/bg-17-2219-2020, 2020
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In glacial periods, ocean uptake of carbon is likely a key player for achieving low atmospheric CO2. In climate models, ocean biological uptake of carbon (C) and phosphorus (P) are often assumed to occur in fixed proportions.
In this study, we allow the ratio of C : P to vary and simulate, to first approximation, the complex biological changes that occur in the ocean over long timescales. We show here that, for glacial–interglacial cycles, this complexity contributes to low atmospheric CO2.
Yoshiki Kanzaki, Bernard P. Boudreau, Sandra Kirtland Turner, and Andy Ridgwell
Geosci. Model Dev., 12, 4469–4496, https://doi.org/10.5194/gmd-12-4469-2019, https://doi.org/10.5194/gmd-12-4469-2019, 2019
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This paper provides eLABS, an extension of the lattice-automaton bioturbation simulator LABS. In our new model, the benthic animal behavior interacts and changes dynamically with oxygen and organic matter concentrations and the water flows caused by benthic animals themselves, in a 2-D marine-sediment grid. The model can address the mechanisms behind empirical observations of bioturbation based on the interactions between physical, chemical and biological aspects of marine sediment.
Jamie D. Wilson, Stephen Barker, Neil R. Edwards, Philip B. Holden, and Andy Ridgwell
Biogeosciences, 16, 2923–2936, https://doi.org/10.5194/bg-16-2923-2019, https://doi.org/10.5194/bg-16-2923-2019, 2019
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The remains of plankton rain down from the surface ocean to the deep ocean, acting to store CO2 in the deep ocean. We used a model of biology and ocean circulation to explore the importance of this process in different regions of the ocean. The amount of CO2 stored in the deep ocean is most sensitive to changes in the Southern Ocean. As plankton in the Southern Ocean are likely those most impacted by future climate change, the amount of CO2 they store in the deep ocean could also be affected.
Krista M. S. Kemppinen, Philip B. Holden, Neil R. Edwards, Andy Ridgwell, and Andrew D. Friend
Clim. Past, 15, 1039–1062, https://doi.org/10.5194/cp-15-1039-2019, https://doi.org/10.5194/cp-15-1039-2019, 2019
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We simulate the Last Glacial Maximum atmospheric CO2 decrease with a large ensemble of parameter sets to investigate the range of possible physical and biogeochemical Earth system changes accompanying the CO2 decrease. Amongst the dominant ensemble changes is an increase in terrestrial carbon, which we attribute to a slower soil respiration rate, and the preservation of carbon by the LGM ice sheets. Further investigation into the role of terrestrial carbon is warranted.
Maria Grigoratou, Fanny M. Monteiro, Daniela N. Schmidt, Jamie D. Wilson, Ben A. Ward, and Andy Ridgwell
Biogeosciences, 16, 1469–1492, https://doi.org/10.5194/bg-16-1469-2019, https://doi.org/10.5194/bg-16-1469-2019, 2019
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The paper presents a novel study based on the traits of shell size, calcification and feeding behaviour of two planktonic foraminifera life stages using modelling simulations. With the model, we tested the cost and benefit of calcification and explored how the interactions of planktonic foraminifera among other plankton groups influence their biomass under different environmental conditions. Our results provide new insights into environmental controls in planktonic foraminifera ecology.
Ben A. Ward, Jamie D. Wilson, Ros M. Death, Fanny M. Monteiro, Andrew Yool, and Andy Ridgwell
Geosci. Model Dev., 11, 4241–4267, https://doi.org/10.5194/gmd-11-4241-2018, https://doi.org/10.5194/gmd-11-4241-2018, 2018
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A novel configuration of an Earth system model includes a diverse plankton community. The model – EcoGEnIE – is sufficiently complex to reproduce a realistic, size-structured plankton community, while at the same time retaining the efficiency to run to a global steady state (~ 10k years). The increased capabilities of EcoGEnIE will allow future exploration of ecological communities on much longer timescales than have so far been examined in global ocean models and particularly for past climate.
Tom Dunkley Jones, Hayley R. Manners, Murray Hoggett, Sandra Kirtland Turner, Thomas Westerhold, Melanie J. Leng, Richard D. Pancost, Andy Ridgwell, Laia Alegret, Rob Duller, and Stephen T. Grimes
Clim. Past, 14, 1035–1049, https://doi.org/10.5194/cp-14-1035-2018, https://doi.org/10.5194/cp-14-1035-2018, 2018
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The Paleocene–Eocene Thermal Maximum (PETM) is a transient global warming event associated with a doubling of atmospheric carbon dioxide concentrations. Here we document a major increase in sediment accumulation rates on a subtropical continental margin during the PETM, likely due to marked changes in hydro-climates and sediment transport. These high sedimentation rates persist through the event and may play a key role in the removal of carbon from the atmosphere by the burial of organic carbon.
Dominik Hülse, Sandra Arndt, Stuart Daines, Pierre Regnier, and Andy Ridgwell
Geosci. Model Dev., 11, 2649–2689, https://doi.org/10.5194/gmd-11-2649-2018, https://doi.org/10.5194/gmd-11-2649-2018, 2018
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We present a 1-D analytical diagenetic model resolving organic matter (OM) cycling and the associated biogeochemical dynamics in marine sediments designed to be coupled to Earth system models (ESMs). The reaction network accounts for the most important reactions associated with OM dynamics. The coupling is described and the OM degradation rate constant is tuned. Various observations, such as pore water profiles, sediment water interface fluxes and OM content, are reproduced with good accuracy.
Malin Ödalen, Jonas Nycander, Kevin I. C. Oliver, Laurent Brodeau, and Andy Ridgwell
Biogeosciences, 15, 1367–1393, https://doi.org/10.5194/bg-15-1367-2018, https://doi.org/10.5194/bg-15-1367-2018, 2018
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We conclude that different initial states for an ocean model result in different capacities for ocean carbon storage due to differences in the ocean circulation state and the origin of the carbon in the initial ocean carbon reservoir. This could explain why it is difficult to achieve comparable responses of the ocean carbon system in model inter-comparison studies in which the initial states vary between models. We show that this effect of the initial state is quantifiable.
Alvaro Guevara-Murua, Caroline A. Williams, Erica J. Hendy, and Pablo Imbach
Clim. Past, 14, 175–191, https://doi.org/10.5194/cp-14-175-2018, https://doi.org/10.5194/cp-14-175-2018, 2018
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This study reconstructs a new semi-quantitative rainfall index for the Pacific coast of Central America using documentary sources for the period 1640 to 1945. In addition, we explore the various mechanisms and processes that may explain inter-annual and inter-decadal rainfall variability over the Pacific coast of Central America.
Natalie S. Lord, Michel Crucifix, Dan J. Lunt, Mike C. Thorne, Nabila Bounceur, Harry Dowsett, Charlotte L. O'Brien, and Andy Ridgwell
Clim. Past, 13, 1539–1571, https://doi.org/10.5194/cp-13-1539-2017, https://doi.org/10.5194/cp-13-1539-2017, 2017
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We present projections of long-term changes in climate, produced using a statistical emulator based on climate data from a state-of-the-art climate model. We use the emulator to model changes in temperature and precipitation over the late Pliocene (3.3–2.8 million years before present) and the next 200 thousand years. The impact of the Earth's orbit and the atmospheric carbon dioxide concentration on climate is assessed, and the data for the late Pliocene are compared to proxy temperature data.
Taraka Davies-Barnard, Andy Ridgwell, Joy Singarayer, and Paul Valdes
Clim. Past, 13, 1381–1401, https://doi.org/10.5194/cp-13-1381-2017, https://doi.org/10.5194/cp-13-1381-2017, 2017
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We present the first model analysis using a fully coupled dynamic atmosphere–ocean–vegetation GCM over the last 120 kyr that quantifies the net effect of vegetation on climate. This analysis shows that over the whole period the biogeophysical effect (albedo, evapotranspiration) is dominant, and that the biogeochemical impacts may have a lower possible range than typically estimated. This emphasises the temporal reliance of the balance between biogeophysical and biogeochemical effects.
J. D. Wilson, A. Ridgwell, and S. Barker
Biogeosciences, 12, 5547–5562, https://doi.org/10.5194/bg-12-5547-2015, https://doi.org/10.5194/bg-12-5547-2015, 2015
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We explore whether ocean model transport rates, in the form of a transport matrix, can be used to estimate remineralisation rates from dissolved nutrient concentrations and infer vertical fluxes of particulate organic carbon. Estimated remineralisation rates are significantly sensitive to uncertainty in the observations and the modelled circulation. The remineralisation of dissolved organic matter is an additional source of uncertainty when inferring vertical fluxes from remineralisation rates.
A. Guevara-Murua, C. A. Williams, E. J. Hendy, A. C. Rust, and K. V. Cashman
Clim. Past, 10, 1707–1722, https://doi.org/10.5194/cp-10-1707-2014, https://doi.org/10.5194/cp-10-1707-2014, 2014
R. Death, J. L. Wadham, F. Monteiro, A. M. Le Brocq, M. Tranter, A. Ridgwell, S. Dutkiewicz, and R. Raiswell
Biogeosciences, 11, 2635–2643, https://doi.org/10.5194/bg-11-2635-2014, https://doi.org/10.5194/bg-11-2635-2014, 2014
G. Colbourn, A. Ridgwell, and T. M. Lenton
Geosci. Model Dev., 6, 1543–1573, https://doi.org/10.5194/gmd-6-1543-2013, https://doi.org/10.5194/gmd-6-1543-2013, 2013
M. Eby, A. J. Weaver, K. Alexander, K. Zickfeld, A. Abe-Ouchi, A. A. Cimatoribus, E. Crespin, S. S. Drijfhout, N. R. Edwards, A. V. Eliseev, G. Feulner, T. Fichefet, C. E. Forest, H. Goosse, P. B. Holden, F. Joos, M. Kawamiya, D. Kicklighter, H. Kienert, K. Matsumoto, I. I. Mokhov, E. Monier, S. M. Olsen, J. O. P. Pedersen, M. Perrette, G. Philippon-Berthier, A. Ridgwell, A. Schlosser, T. Schneider von Deimling, G. Shaffer, R. S. Smith, R. Spahni, A. P. Sokolov, M. Steinacher, K. Tachiiri, K. Tokos, M. Yoshimori, N. Zeng, and F. Zhao
Clim. Past, 9, 1111–1140, https://doi.org/10.5194/cp-9-1111-2013, https://doi.org/10.5194/cp-9-1111-2013, 2013
P. B. Holden, N. R. Edwards, S. A. Müller, K. I. C. Oliver, R. M. Death, and A. Ridgwell
Biogeosciences, 10, 1815–1833, https://doi.org/10.5194/bg-10-1815-2013, https://doi.org/10.5194/bg-10-1815-2013, 2013
Related subject area
Biogeochemistry: Biomineralization
The calcitic test growth rate of Spirillina vivipara (Foraminifera)
Impact of seawater sulfate concentration on sulfur concentration and isotopic composition in calcite of two cultured benthic foraminifera
Marked recent declines in boron in Baltic Sea cod otoliths – a bellwether of incipient acidification in a vast hypoxic system?
Ocean acidification enhances primary productivity and nocturnal carbonate dissolution in intertidal rock pools
Biomineralization of amorphous Fe-, Mn- and Si-rich mineral phases by cyanobacteria under oxic and alkaline conditions
Biogenic calcium carbonate as evidence for life
Element ∕ Ca ratios in Nodosariida (Foraminifera) and their potential application for paleoenvironmental reconstructions
Deciphering the origin of dubiofossils from the Pennsylvanian of the Paraná Basin, Brazil
Properties of exopolymeric substances (EPSs) produced during cyanobacterial growth: potential role in whiting events
Inorganic component in oak waterlogged archaeological wood and volcanic lake compartments
Ultradian rhythms in shell composition of photosymbiotic and non-photosymbiotic mollusks
Extracellular enzyme activity in the coastal upwelling system off Peru: a mesocosm experiment
Multi-proxy assessment of brachiopod shell calcite as a potential archive of seawater temperature and oxygen isotope composition
Upper-ocean flux of biogenic calcite produced by the Arctic planktonic foraminifera Neogloboquadrina pachyderma
Do bacterial viruses affect framboid-like mineral formation?
Calcification response of reef corals to seasonal upwelling in the northern Arabian Sea (Masirah Island, Oman)
Growth rate rather than temperature affects the B∕Ca ratio in the calcareous red alga Lithothamnion corallioides
Heavy metal uptake of nearshore benthic foraminifera during multi-metal culturing experiments
A stable ultrastructural pattern despite variable cell size in Lithothamnion corallioides
Decoupling salinity and carbonate chemistry: low calcium ion concentration rather than salinity limits calcification in Baltic Sea mussels
Technical note: A universal method for measuring the thickness of microscopic calcite crystals, based on bidirectional circular polarization
The patterns of elemental concentration (Ca, Na, Sr, Mg, Mn, Ba, Cu, Pb, V, Y, U and Cd) in shells of invertebrates representing different CaCO3 polymorphs: a case study from the brackish Gulf of Gdańsk (the Baltic Sea)
Carbonic anhydrase is involved in calcification by the benthic foraminifer Amphistegina lessonii
Distribution of chlorine and fluorine in benthic foraminifera
Rare earth elements in oyster shells: provenance discrimination and potential vital effects
Determining how biotic and abiotic variables affect the shell condition and parameters of Heliconoides inflatus pteropods from a sediment trap in the Cariaco Basin
Intercomparison of four methods to estimate coral calcification under various environmental conditions
Technical note: The silicon isotopic composition of choanoflagellates: implications for a mechanistic understanding of isotopic fractionation during biosilicification
Insights into architecture, growth dynamics, and biomineralization from pulsed Sr-labelled Katelysia rhytiphora shells (Mollusca, Bivalvia)
Subaqueous speleothems (Hells Bells) formed by the interplay of pelagic redoxcline biogeochemistry and specific hydraulic conditions in the El Zapote sinkhole, Yucatán Peninsula, Mexico
Kinetics of calcite precipitation by ureolytic bacteria under aerobic and anaerobic conditions
Coupled calcium and inorganic carbon uptake suggested by magnesium and sulfur incorporation in foraminiferal calcite
Planktonic foraminiferal spine versus shell carbonate Na incorporation in relation to salinity
Precipitation of calcium carbonate mineral induced by viral lysis of cyanobacteria: evidence from laboratory experiments
Mineral formation induced by cable bacteria performing long-distance electron transport in marine sediments
Variation in brachiopod microstructure and isotope geochemistry under low-pH–ocean acidification conditions
Weaving of biomineralization framework in rotaliid foraminifera: implications for paleoceanographic proxies
Marine and freshwater micropearls: biomineralization producing strontium-rich amorphous calcium carbonate inclusions is widespread in the genus Tetraselmis (Chlorophyta)
Carbon and nitrogen turnover in the Arctic deep sea: in situ benthic community response to diatom and coccolithophorid phytodetritus
Technical note: A refinement of coccolith separation methods: measuring the sinking characteristics of coccoliths
Improving the strength of sandy soils via ureolytic CaCO3 solidification by Sporosarcina ureae
Impact of salinity on element incorporation in two benthic foraminiferal species with contrasting magnesium contents
Calcification in a marginal sea – influence of seawater [Ca2+] and carbonate chemistry on bivalve shell formation
Effect of temperature rise and ocean acidification on growth of calcifying tubeworm shells (Spirorbis spirorbis): an in situ benthocosm approach
Phosphorus limitation and heat stress decrease calcification in Emiliania huxleyi
Anatomical structure overrides temperature controls on magnesium uptake – calcification in the Arctic/subarctic coralline algae Leptophytum laeve and Kvaleya epilaeve (Rhodophyta; Corallinales)
Coral calcifying fluid aragonite saturation states derived from Raman spectroscopy
Impact of trace metal concentrations on coccolithophore growth and morphology: laboratory simulations of Cretaceous stress
Ba incorporation in benthic foraminifera
Size-dependent response of foraminiferal calcification to seawater carbonate chemistry
Yukiko Nagai, Katsuyuki Uematsu, Briony Mamo, and Takashi Toyofuku
Biogeosciences, 21, 1675–1684, https://doi.org/10.5194/bg-21-1675-2024, https://doi.org/10.5194/bg-21-1675-2024, 2024
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This research highlights Spirillina vivipara's calcification strategy, highlighting variability in foraminiferal test formation. By examining its rapid growth and high calcification rate, we explain ecological strategies correlating with its broad coastal distribution. These insights amplify our understanding of foraminiferal ecology and underscore their impact on marine carbon cycling and paleoclimate studies, advocating for a species-specific approach in future research.
Caroline Thaler, Guillaume Paris, Marc Dellinger, Delphine Dissard, Sophie Berland, Arul Marie, Amandine Labat, and Annachiara Bartolini
Biogeosciences, 20, 5177–5198, https://doi.org/10.5194/bg-20-5177-2023, https://doi.org/10.5194/bg-20-5177-2023, 2023
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Our study focuses on one of the most used microfossils in paleoenvironmental reconstructions: foraminifera. We set up a novel approach of long-term cultures under variable and controlled conditions. Our results highlight that foraminiferal tests can be used as a unique record of both SO42−/CaCO3 and δ34S seawater variation. This establishes geological formations composed of biogenic carbonates as a potential repository of paleoenvironmental seawater sulfate chemical and geochemical variation.
Karin E. Limburg, Yvette Heimbrand, and Karol Kuliński
Biogeosciences, 20, 4751–4760, https://doi.org/10.5194/bg-20-4751-2023, https://doi.org/10.5194/bg-20-4751-2023, 2023
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We found a 3-to-5-fold decline in boron in Baltic cod otoliths between the late 1990s and 2021. The trend correlates with declines in oxygen and pH but not with increased salinity. Otolith B : Ca correlated with phosphorus in a healthy out-group (Icelandic cod) but not in Baltic cod. The otolith biomarkers Mn : Mg (hypoxia proxy) and B : Ca in cod otoliths suggest a general increase in both hypoxia and acidification within Baltic intermediate and deep waters in the last decade.
Narimane Dorey, Sophie Martin, and Lester Kwiatkowski
Biogeosciences, 20, 4289–4306, https://doi.org/10.5194/bg-20-4289-2023, https://doi.org/10.5194/bg-20-4289-2023, 2023
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Human CO2 emissions are modifying ocean carbonate chemistry, causing ocean acidification and likely already impacting marine ecosystems. Here, we added CO2 to intertidal pools at the start of emersion to investigate the influence of future ocean acidification on net community production (NCP) and calcification (NCC). By day, adding CO2 fertilized the pools (+20 % NCP). By night, pools experienced net community dissolution, a dissolution that was further increased (+40 %) by the CO2 addition.
Karim Benzerara, Agnès Elmaleh, Maria Ciobanu, Alexis De Wever, Paola Bertolino, Miguel Iniesto, Didier Jézéquel, Purificación López-García, Nicolas Menguy, Elodie Muller, Fériel Skouri-Panet, Sufal Swaraj, Rosaluz Tavera, Christophe Thomazo, and David Moreira
Biogeosciences, 20, 4183–4195, https://doi.org/10.5194/bg-20-4183-2023, https://doi.org/10.5194/bg-20-4183-2023, 2023
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Iron and manganese are poorly soluble in oxic and alkaline solutions but much more soluble under anoxic conditions. As a result, authigenic minerals rich in Fe and/or Mn have been viewed as diagnostic of anoxic conditions. However, here we reveal a new case of biomineralization by specific cyanobacteria, forming abundant Fe(III)- and Mn(IV)-rich amorphous phases under oxic conditions in an alkaline lake. This might be an overlooked biotic contribution to the scavenging of Fe from water columns.
Sara Ronca, Francesco Mura, Marco Brandano, Angela Cirigliano, Francesca Benedetti, Alessandro Grottoli, Massimo Reverberi, Daniele Federico Maras, Rodolfo Negri, Ernesto Di Mauro, and Teresa Rinaldi
Biogeosciences, 20, 4135–4145, https://doi.org/10.5194/bg-20-4135-2023, https://doi.org/10.5194/bg-20-4135-2023, 2023
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The history of Earth is a story of the co-evolution of minerals and microbes. We present the evidence that moonmilk precipitation is driven by microorganisms within the rocks and not only on the rock surfaces. Moreover, the moonmilk produced within the rocks contributes to rock formation. The calcite speleothem moonmilk is the only known carbonate speleothem on Earth with undoubted biogenic origin, thus representing a biosignature of life.
Laura Pacho, Lennart de Nooijer, and Gert-Jan Reichart
Biogeosciences, 20, 4043–4056, https://doi.org/10.5194/bg-20-4043-2023, https://doi.org/10.5194/bg-20-4043-2023, 2023
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We analyzed Mg / Ca and other El / Ca (Na / Ca, B / Ca, Sr / Ca and Ba / Ca) in Nodosariata. Their calcite chemistry is markedly different to that of the other calcifying orders of foraminifera. We show a relation between the species average Mg / Ca and its sensitivity to changes in temperature. Differences were reflected in both the Mg incorporation and the sensitivities of Mg / Ca to temperature.
João Pedro Saldanha, Joice Cagliari, Rodrigo Scalise Horodyski, Lucas Del Mouro, and Mírian Liza Alves Forancelli Pacheco
Biogeosciences, 20, 3943–3979, https://doi.org/10.5194/bg-20-3943-2023, https://doi.org/10.5194/bg-20-3943-2023, 2023
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We analyze a complex and branched mineral structure with an obscure origin, considering form, matrix, composition, and context. Comparisons eliminate controlled biominerals. The structure's intricate history suggests microbial influence and alterations, followed by a thermal event. Complex interactions shaped its forms, making origin classification tougher. This study highlights the elaborated nature of dubiofossils, identifying challenges in distinguishing biominerals from abiotic minerals.
Marlisa Martinho de Brito, Irina Bundeleva, Frédéric Marin, Emmanuelle Vennin, Annick Wilmotte, Laurent Plasseraud, and Pieter T. Visscher
Biogeosciences, 20, 3165–3183, https://doi.org/10.5194/bg-20-3165-2023, https://doi.org/10.5194/bg-20-3165-2023, 2023
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Cyanobacterial blooms are associated with whiting events – natural occurrences of fine-grained carbonate precipitation in the water column. The role of organic matter (OM) produced by cyanobacteria in these events has been overlooked in previous research. Our laboratory experiments showed that OM affects the size and quantity of CaCO3 minerals. We propose a model of OM-associated CaCO3 precipitation during picoplankton blooms, which may have been neglected in modern and ancient events.
Giancarlo Sidoti, Federica Antonelli, Giulia Galotta, Maria Cristina Moscatelli, Davor Kržišnik, Vittorio Vinciguerra, Swati Tamantini, Rosita Marabottini, Natalia Macro, and Manuela Romagnoli
Biogeosciences, 20, 3137–3149, https://doi.org/10.5194/bg-20-3137-2023, https://doi.org/10.5194/bg-20-3137-2023, 2023
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The mineral content in archaeological wood pile dwellings and in the surrounding sediments in a volcanic lake was investigated. Calcium was the most abundant element; the second most abundant element was arsenic in sapwood. Sulfur, iron and potassium were also present. The mineral compounds are linked to the volcanic origin of the lake, to bioaccumulation processes induced by bacteria (i.e. sulfate-reducing bacteria) and to biochemical processes.
Niels J. de Winter, Daniel Killam, Lukas Fröhlich, Lennart de Nooijer, Wim Boer, Bernd R. Schöne, Julien Thébault, and Gert-Jan Reichart
Biogeosciences, 20, 3027–3052, https://doi.org/10.5194/bg-20-3027-2023, https://doi.org/10.5194/bg-20-3027-2023, 2023
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Mollusk shells are valuable recorders of climate and environmental changes of the past down to a daily resolution. To explore this potential, we measured changes in the composition of shells of two types of bivalves recorded at the hourly scale: the king scallop Pecten maximus and giant clams (Tridacna) that engaged in photosymbiosis. We find that photosymbiosis produces more day–night fluctuation in shell chemistry but that most of the variation is not periodic, perhaps recording weather.
Kristian Spilling, Jonna Piiparinen, Eric P. Achterberg, Javier Arístegui, Lennart T. Bach, Maria T. Camarena-Gómez, Elisabeth von der Esch, Martin A. Fischer, Markel Gómez-Letona, Nauzet Hernández-Hernández, Judith Meyer, Ruth A. Schmitz, and Ulf Riebesell
Biogeosciences, 20, 1605–1619, https://doi.org/10.5194/bg-20-1605-2023, https://doi.org/10.5194/bg-20-1605-2023, 2023
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We carried out an enclosure experiment using surface water off Peru with different additions of oxygen minimum zone water. In this paper, we report on enzyme activity and provide data on the decomposition of organic matter. We found very high activity with respect to an enzyme breaking down protein, suggesting that this is important for nutrient recycling both at present and in the future ocean.
Thomas Letulle, Danièle Gaspard, Mathieu Daëron, Florent Arnaud-Godet, Arnauld Vinçon-Laugier, Guillaume Suan, and Christophe Lécuyer
Biogeosciences, 20, 1381–1403, https://doi.org/10.5194/bg-20-1381-2023, https://doi.org/10.5194/bg-20-1381-2023, 2023
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This paper studies the chemistry of modern marine shells called brachiopods. We investigate the relationship of the chemistry of these shells with sea temperatures to test and develop tools for estimating sea temperatures in the distant past. Our results confirm that two of the investigated chemical markers could be useful thermometers despite some second-order variability independent of temperature. The other chemical markers investigated, however, should not be used as a thermometer.
Franziska Tell, Lukas Jonkers, Julie Meilland, and Michal Kucera
Biogeosciences, 19, 4903–4927, https://doi.org/10.5194/bg-19-4903-2022, https://doi.org/10.5194/bg-19-4903-2022, 2022
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This study analyses the production of calcite shells formed by one of the main Arctic pelagic calcifiers, the foraminifera N. pachyderma. Using vertically resolved profiles of shell concentration, size and weight, we show that calcification occurs throughout the upper 300 m with an average production flux below the calcification zone of 8 mg CaCO3 m−2 d−1 representing 23 % of the total pelagic biogenic carbonate production. The production flux is attenuated in the twilight zone by dissolution.
Paweł Działak, Marcin D. Syczewski, Kamil Kornaus, Mirosław Słowakiewicz, Łukasz Zych, and Andrzej Borkowski
Biogeosciences, 19, 4533–4550, https://doi.org/10.5194/bg-19-4533-2022, https://doi.org/10.5194/bg-19-4533-2022, 2022
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Bacteriophages comprise one of the factors that may influence mineralization processes. The number of bacteriophages in the environment usually exceeds the number of bacteria by an order of magnitude. One of the more interesting processes is the formation of framboidal pyrite, and it is not entirely clear what processes determine its formation. Our studies indicate that some bacterial viruses may influence the formation of framboid-like or spherical structures.
Philipp M. Spreter, Markus Reuter, Regina Mertz-Kraus, Oliver Taylor, and Thomas C. Brachert
Biogeosciences, 19, 3559–3573, https://doi.org/10.5194/bg-19-3559-2022, https://doi.org/10.5194/bg-19-3559-2022, 2022
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We investigate the calcification rate of reef corals from an upwelling zone, where low seawater pH and high nutrient concentrations represent a recent analogue for the future ocean. Calcification rate of the corals largely relies on extension growth. Variable responses of extension growth to nutrients either compensate or exacerbate negative effects of weak skeletal thickening associated with low seawater pH – a mechanism that is critical for the persistence of coral reefs under global change.
Giulia Piazza, Valentina A. Bracchi, Antonio Langone, Agostino N. Meroni, and Daniela Basso
Biogeosciences, 19, 1047–1065, https://doi.org/10.5194/bg-19-1047-2022, https://doi.org/10.5194/bg-19-1047-2022, 2022
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The coralline alga Lithothamnion corallioides is widely distributed in the Mediterranean Sea and NE Atlantic Ocean, where it constitutes rhodolith beds, which are diversity-rich ecosystems on the seabed. The boron incorporated in the calcified thallus of coralline algae (B/Ca) can be used to trace past changes in seawater carbonate and pH. This paper suggests a non-negligible effect of algal growth rate on B/Ca, recommending caution in adopting this proxy for paleoenvironmental reconstructions.
Sarina Schmidt, Ed C. Hathorne, Joachim Schönfeld, and Dieter Garbe-Schönberg
Biogeosciences, 19, 629–664, https://doi.org/10.5194/bg-19-629-2022, https://doi.org/10.5194/bg-19-629-2022, 2022
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The study addresses the potential of marine shell-forming organisms as proxy carriers for heavy metal contamination in the environment. The aim is to investigate if the incorporation of heavy metals is a direct function of their concentration in seawater. Culturing experiments with a metal mixture were carried out over a wide concentration range. Our results show shell-forming organisms to be natural archives that enable the determination of metals in polluted and pristine environments.
Valentina Alice Bracchi, Giulia Piazza, and Daniela Basso
Biogeosciences, 18, 6061–6076, https://doi.org/10.5194/bg-18-6061-2021, https://doi.org/10.5194/bg-18-6061-2021, 2021
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Ultrastructures of Lithothamnion corallioides, a crustose coralline alga collected from the Atlantic and Mediterranean Sea at different depths, show high-Mg-calcite cell walls formed by crystals with a specific shape and orientation that are unaffected by different environmental conditions of the living sites. This suggests that the biomineralization process is biologically controlled in coralline algae and can have interesting applications in paleontology.
Trystan Sanders, Jörn Thomsen, Jens Daniel Müller, Gregor Rehder, and Frank Melzner
Biogeosciences, 18, 2573–2590, https://doi.org/10.5194/bg-18-2573-2021, https://doi.org/10.5194/bg-18-2573-2021, 2021
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The Baltic Sea is expected to experience a rapid drop in salinity and increases in acidity and warming in the next century. Calcifying mussels dominate Baltic Sea seafloor ecosystems yet are sensitive to changes in seawater chemistry. We combine laboratory experiments and a field study and show that a lack of calcium causes extremely slow growth rates in mussels at low salinities. Subsequently, climate change in the Baltic may have drastic ramifications for Baltic seafloor ecosystems.
Luc Beaufort, Yves Gally, Baptiste Suchéras-Marx, Patrick Ferrand, and Julien Duboisset
Biogeosciences, 18, 775–785, https://doi.org/10.5194/bg-18-775-2021, https://doi.org/10.5194/bg-18-775-2021, 2021
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The coccoliths are major contributors to the particulate inorganic carbon in the ocean. They are extremely difficult to weigh because they are too small to be manipulated. We propose a universal method to measure thickness and weight of fine calcite using polarizing microscopy that does not require fine-tuning of the light or a calibration process. This method named "bidirectional circular polarization" uses two images taken with two directions of a circular polarizer.
Anna Piwoni-Piórewicz, Stanislav Strekopytov, Emma Humphreys-Williams, and Piotr Kukliński
Biogeosciences, 18, 707–728, https://doi.org/10.5194/bg-18-707-2021, https://doi.org/10.5194/bg-18-707-2021, 2021
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Calcifying organisms occur globally in almost every environment, and the process of biomineralization is of great importance in the global carbon cycle and use of skeletons as environmental data archives. The composition of skeletons is very complex. It is determined by the mechanisms of biological control on biomineralization and the response of calcifying organisms to varying environmental drivers. Yet for trace elements, such as Cu, Pb and Cd, an impact of environmental factors is pronounced.
Siham de Goeyse, Alice E. Webb, Gert-Jan Reichart, and Lennart J. de Nooijer
Biogeosciences, 18, 393–401, https://doi.org/10.5194/bg-18-393-2021, https://doi.org/10.5194/bg-18-393-2021, 2021
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Foraminifera are calcifying organisms that play a role in the marine inorganic-carbon cycle and are widely used to reconstruct paleoclimates. However, the fundamental process by which they calcify remains essentially unknown. Here we use inhibitors to show that an enzyme is speeding up the conversion between bicarbonate and CO2. This helps the foraminifera acquire sufficient carbon for calcification and might aid their tolerance to elevated CO2 level.
Anne Roepert, Lubos Polerecky, Esmee Geerken, Gert-Jan Reichart, and Jack J. Middelburg
Biogeosciences, 17, 4727–4743, https://doi.org/10.5194/bg-17-4727-2020, https://doi.org/10.5194/bg-17-4727-2020, 2020
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We investigated, for the first time, the spatial distribution of chlorine and fluorine in the shell walls of four benthic foraminifera species: Ammonia tepida, Amphistegina lessonii, Archaias angulatus, and Sorites marginalis. Cross sections of specimens were imaged using nanoSIMS. The distribution of Cl and F was co-located with organics in the rotaliids and rather homogeneously distributed in miliolids. We suggest that the incorporation is governed by the biomineralization pathway.
Vincent Mouchi, Camille Godbillot, Vianney Forest, Alexey Ulianov, Franck Lartaud, Marc de Rafélis, Laurent Emmanuel, and Eric P. Verrecchia
Biogeosciences, 17, 2205–2217, https://doi.org/10.5194/bg-17-2205-2020, https://doi.org/10.5194/bg-17-2205-2020, 2020
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Rare earth elements (REEs) in coastal seawater are included in bivalve shells during growth, and a regional fingerprint can be defined for provenance and environmental monitoring studies. We present a large dataset of REE abundances from oysters from six locations in France. The cupped oyster can be discriminated from one locality to another, but this is not the case for the flat oyster. Therefore, provenance studies using bivalve shells based on REEs are not adapted for the flat oyster.
Rosie L. Oakes and Jocelyn A. Sessa
Biogeosciences, 17, 1975–1990, https://doi.org/10.5194/bg-17-1975-2020, https://doi.org/10.5194/bg-17-1975-2020, 2020
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Pteropods are a group of tiny swimming snails whose fragile shells put them at risk from ocean acidification. We investigated the factors influencing the thickness of pteropods shells in the Cariaco Basin, off Venezuela, which is unaffected by ocean acidification. We found that pteropods formed thicker shells when nutrient concentrations, an indicator of food availability, were highest, indicating that food may be an important factor in mitigating the effects of ocean acidification on pteropods.
Miguel Gómez Batista, Marc Metian, François Oberhänsli, Simon Pouil, Peter W. Swarzenski, Eric Tambutté, Jean-Pierre Gattuso, Carlos M. Alonso Hernández, and Frédéric Gazeau
Biogeosciences, 17, 887–899, https://doi.org/10.5194/bg-17-887-2020, https://doi.org/10.5194/bg-17-887-2020, 2020
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In this paper, we assessed four methods (total alkalinity anomaly, calcium anomaly, 45Ca incorporation, and 13C incorporation) to determine coral calcification of a reef-building coral. Under all conditions (light vs. dark incubations and ambient vs. lowered pH levels), calcification rates estimated using the alkalinity and calcium anomaly techniques as well as 45Ca incorporation were highly correlated, while significantly different results were obtained with the 13C incorporation technique.
Alan Marron, Lucie Cassarino, Jade Hatton, Paul Curnow, and Katharine R. Hendry
Biogeosciences, 16, 4805–4813, https://doi.org/10.5194/bg-16-4805-2019, https://doi.org/10.5194/bg-16-4805-2019, 2019
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Isotopic signatures of silica fossils can be used as archives of past oceanic silicon cycling, which is linked to marine carbon uptake. However, the biochemistry that lies behind such chemical fingerprints remains poorly understood. We present the first measurements of silicon isotopes in a group of protists closely related to animals, choanoflagellates. Our results highlight a taxonomic basis to silica isotope signatures, possibly via a shared transport pathway in choanoflagellates and animals.
Laura M. Otter, Oluwatoosin B. A. Agbaje, Matt R. Kilburn, Christoph Lenz, Hadrien Henry, Patrick Trimby, Peter Hoppe, and Dorrit E. Jacob
Biogeosciences, 16, 3439–3455, https://doi.org/10.5194/bg-16-3439-2019, https://doi.org/10.5194/bg-16-3439-2019, 2019
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This study uses strontium as a trace elemental marker in combination with high-resolution nano-analytical techniques to label the growth fronts of bivalves in controlled aquaculture conditions. The growing shells incorporate the labels and are used as
snapshotsvisualizing the growth processes across different shell architectures. These observations are combined with structural investigations across length scales and altogether allow for a detailed understanding of this shell.
Simon Michael Ritter, Margot Isenbeck-Schröter, Christian Scholz, Frank Keppler, Johannes Gescher, Lukas Klose, Nils Schorndorf, Jerónimo Avilés Olguín, Arturo González-González, and Wolfgang Stinnesbeck
Biogeosciences, 16, 2285–2305, https://doi.org/10.5194/bg-16-2285-2019, https://doi.org/10.5194/bg-16-2285-2019, 2019
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Unique and spectacular under water speleothems termed as Hells Bells were recently reported from sinkholes (cenotes) of the Yucatán Peninsula, Mexico. However, the mystery of their formation remained unresolved. Here, we present detailed geochemical analyses and delineate that the growth of Hells Bells results from a combination of biogeochemical processes and variable hydraulic conditions within the cenote.
Andrew C. Mitchell, Erika J. Espinosa-Ortiz, Stacy L. Parks, Adrienne J. Phillips, Alfred B. Cunningham, and Robin Gerlach
Biogeosciences, 16, 2147–2161, https://doi.org/10.5194/bg-16-2147-2019, https://doi.org/10.5194/bg-16-2147-2019, 2019
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Microbially induced carbonate mineral precipitation (MICP) is a natural process that is also being investigated for subsurface engineering applications including radionuclide immobilization and microfracture plugging. We demonstrate that rates of MICP from microbial urea hydrolysis (ureolysis) vary with different bacterial strains, but rates are similar in both oxygenated and oxygen-free conditions. Ureolysis MICP is therefore a viable biotechnology in the predominately oxygen-free subsurface.
Inge van Dijk, Christine Barras, Lennart Jan de Nooijer, Aurélia Mouret, Esmee Geerken, Shai Oron, and Gert-Jan Reichart
Biogeosciences, 16, 2115–2130, https://doi.org/10.5194/bg-16-2115-2019, https://doi.org/10.5194/bg-16-2115-2019, 2019
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Systematics in the incorporation of different elements in shells of marine organisms can be used to test calcification models and thus processes involved in precipitation of calcium carbonates. On different scales, we observe a covariation of sulfur and magnesium incorporation in shells of foraminifera, which provides insights into the mechanics behind shell formation. The observed patterns imply that all species of foraminifera actively take up calcium and carbon in a coupled process.
Eveline M. Mezger, Lennart J. de Nooijer, Jacqueline Bertlich, Jelle Bijma, Dirk Nürnberg, and Gert-Jan Reichart
Biogeosciences, 16, 1147–1165, https://doi.org/10.5194/bg-16-1147-2019, https://doi.org/10.5194/bg-16-1147-2019, 2019
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Seawater salinity is an important factor when trying to reconstruct past ocean conditions. Foraminifera, small organisms living in the sea, produce shells that incorporate more Na at higher salinities. The accuracy of reconstructions depends on the fundamental understanding involved in the incorporation and preservation of the original Na of the shell. In this study, we unravel the Na composition of different components of the shell and describe the relative contribution of these components.
Hengchao Xu, Xiaotong Peng, Shijie Bai, Kaiwen Ta, Shouye Yang, Shuangquan Liu, Ho Bin Jang, and Zixiao Guo
Biogeosciences, 16, 949–960, https://doi.org/10.5194/bg-16-949-2019, https://doi.org/10.5194/bg-16-949-2019, 2019
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Viruses have been acknowledged as important components of the marine system for the past 2 decades, but understanding of their role in the functioning of the geochemical cycle remains poor. Results show viral lysis of cyanobacteria can influence the carbonate equilibrium system remarkably and promotes the formation and precipitation of carbonate minerals. Amorphous calcium carbonate (ACC) and aragonite are evident in the lysate, implying that different precipitation processes have occurred.
Nicole M. J. Geerlings, Eva-Maria Zetsche, Silvia Hidalgo-Martinez, Jack J. Middelburg, and Filip J. R. Meysman
Biogeosciences, 16, 811–829, https://doi.org/10.5194/bg-16-811-2019, https://doi.org/10.5194/bg-16-811-2019, 2019
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Multicellular cable bacteria form long filaments that can reach lengths of several centimeters. They affect the chemistry and mineralogy of their surroundings and vice versa. How the surroundings affect the cable bacteria is investigated. They show three different types of biomineral formation: (1) a polymer containing phosphorus in their cells, (2) a sheath of clay surrounding the surface of the filament and (3) the encrustation of a filament via a solid phase containing iron and phosphorus.
Facheng Ye, Hana Jurikova, Lucia Angiolini, Uwe Brand, Gaia Crippa, Daniela Henkel, Jürgen Laudien, Claas Hiebenthal, and Danijela Šmajgl
Biogeosciences, 16, 617–642, https://doi.org/10.5194/bg-16-617-2019, https://doi.org/10.5194/bg-16-617-2019, 2019
Yukiko Nagai, Katsuyuki Uematsu, Chong Chen, Ryoji Wani, Jarosław Tyszka, and Takashi Toyofuku
Biogeosciences, 15, 6773–6789, https://doi.org/10.5194/bg-15-6773-2018, https://doi.org/10.5194/bg-15-6773-2018, 2018
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We interpret detailed SEM and time-lapse observations of the calcification process in living foraminifera, which we reveal to be directly linked to the construction mechanism of organic membranes where the calcium carbonate precipitation takes place. We show that these membranes are a highly perforated outline is first woven by skeletal pseudopodia and then later overlaid by a layer of membranous pseudopodia to close the gaps. The chemical composition is related to these structures.
Agathe Martignier, Montserrat Filella, Kilian Pollok, Michael Melkonian, Michael Bensimon, François Barja, Falko Langenhorst, Jean-Michel Jaquet, and Daniel Ariztegui
Biogeosciences, 15, 6591–6605, https://doi.org/10.5194/bg-15-6591-2018, https://doi.org/10.5194/bg-15-6591-2018, 2018
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The unicellular microalga Tetraselmis cordiformis (Chlorophyta) was recently discovered to form intracellular mineral inclusions, called micropearls, which had been previously overlooked. The present study shows that 10 Tetraselmis species out of the 12 tested share this biomineralization capacity, producing amorphous calcium carbonate inclusions often enriched in Sr. This novel biomineralization process can take place in marine, brackish or freshwater and is therefore a widespread phenomenon.
Ulrike Braeckman, Felix Janssen, Gaute Lavik, Marcus Elvert, Hannah Marchant, Caroline Buckner, Christina Bienhold, and Frank Wenzhöfer
Biogeosciences, 15, 6537–6557, https://doi.org/10.5194/bg-15-6537-2018, https://doi.org/10.5194/bg-15-6537-2018, 2018
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Global warming has altered Arctic phytoplankton communities, with unknown effects on deep-sea communities that depend strongly on food produced at the surface. We compared the responses of Arctic deep-sea benthos to input of phytodetritus from diatoms and coccolithophorids. Coccolithophorid carbon was 5× less recycled than diatom carbon. The utilization of the coccolithophorid carbon may be less efficient, so a shift from diatom to coccolithophorid blooms could entail a delay in carbon cycling.
Hongrui Zhang, Heather Stoll, Clara Bolton, Xiaobo Jin, and Chuanlian Liu
Biogeosciences, 15, 4759–4775, https://doi.org/10.5194/bg-15-4759-2018, https://doi.org/10.5194/bg-15-4759-2018, 2018
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The sinking speeds of coccoliths are relevant for laboratory methods to separate coccoliths for geochemical analysis. However, in the absence of estimates of coccolith settling velocity, previous implementations have depended mainly on time-consuming method development by trial and error. In this study, the sinking velocities of cocooliths were carefully measured for the first time. We also provide an estimation of coccolith sinking velocity by shape, which will make coccolith separation easier.
Justin Michael Whitaker, Sai Vanapalli, and Danielle Fortin
Biogeosciences, 15, 4367–4380, https://doi.org/10.5194/bg-15-4367-2018, https://doi.org/10.5194/bg-15-4367-2018, 2018
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Materials, like soils or cements, can require repair. This study used a new bacterium (Sporosarcina ureae) in a repair method called "microbially induced carbonate precipitation" (MICP). In three trials, benefits were shown: S. ureae could make a model sandy soil much stronger by MICP, in fact better than a lot of other bacteria. However, MICP-treated samples got weaker in three trials of acid rain. In conclusion, S. ureae in MICP repair shows promise when used in appropriate climates.
Esmee Geerken, Lennart Jan de Nooijer, Inge van Dijk, and Gert-Jan Reichart
Biogeosciences, 15, 2205–2218, https://doi.org/10.5194/bg-15-2205-2018, https://doi.org/10.5194/bg-15-2205-2018, 2018
Jörn Thomsen, Kirti Ramesh, Trystan Sanders, Markus Bleich, and Frank Melzner
Biogeosciences, 15, 1469–1482, https://doi.org/10.5194/bg-15-1469-2018, https://doi.org/10.5194/bg-15-1469-2018, 2018
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The distribution of mussel in estuaries is limited but the mechanisms are not well understood. We document for the first time that reduced Ca2+ concentration in the low saline, brackish Baltic Sea affects the ability of mussel larvae to calcify the first larval shell. As complete formation of the shell is a prerequisite for successful development, impaired calcification during this sensitive life stage can have detrimental effects on the species' ability to colonize habitats.
Sha Ni, Isabelle Taubner, Florian Böhm, Vera Winde, and Michael E. Böttcher
Biogeosciences, 15, 1425–1445, https://doi.org/10.5194/bg-15-1425-2018, https://doi.org/10.5194/bg-15-1425-2018, 2018
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Spirorbis tube worms are common epibionts on brown algae in the Baltic Sea. We made experiments with Spirorbis in the
Kiel Outdoor Benthocosmsat CO2 and temperature conditions predicted for the year 2100. The worms were able to grow tubes even at CO2 levels favouring shell dissolution but did not survive at mean temperatures over 24° C. This indicates that Spirorbis worms will suffer from future excessive ocean warming and from ocean acidification fostering corrosion of their protective tubes.
Andrea C. Gerecht, Luka Šupraha, Gerald Langer, and Jorijntje Henderiks
Biogeosciences, 15, 833–845, https://doi.org/10.5194/bg-15-833-2018, https://doi.org/10.5194/bg-15-833-2018, 2018
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Calcifying phytoplankton play an import role in long-term CO2 removal from the atmosphere. We therefore studied the ability of a representative species to continue sequestrating CO2 under future climate conditions. We show that CO2 sequestration is negatively affected by both an increase in temperature and the resulting decrease in nutrient availability. This will impact the biogeochemical cycle of carbon and may have a positive feedback on rising CO2 levels.
Merinda C. Nash and Walter Adey
Biogeosciences, 15, 781–795, https://doi.org/10.5194/bg-15-781-2018, https://doi.org/10.5194/bg-15-781-2018, 2018
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Past seawater temperatures can be reconstructed using magnesium / calcium ratios of biogenic carbonates. As temperature increases, so does magnesium. Here we show that for these Arctic/subarctic coralline algae, anatomy is the first control on Mg / Ca, not temperature. When using coralline algae for temperature reconstruction, it is first necessary to check for anatomical influences on Mg / Ca.
Thomas M. DeCarlo, Juan P. D'Olivo, Taryn Foster, Michael Holcomb, Thomas Becker, and Malcolm T. McCulloch
Biogeosciences, 14, 5253–5269, https://doi.org/10.5194/bg-14-5253-2017, https://doi.org/10.5194/bg-14-5253-2017, 2017
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We present a new technique to quantify the chemical conditions under which corals build their skeletons by analysing them with lasers at a very fine resolution, down to 1/100th the width of a human hair. Our first applications to laboratory-cultured and wild corals demonstrates the complex interplay among seawater conditions (temperature and acidity), calcifying fluid chemistry, and bulk skeleton accretion, which will define the sensitivity of coral calcification to 21st century climate change.
Giulia Faucher, Linn Hoffmann, Lennart T. Bach, Cinzia Bottini, Elisabetta Erba, and Ulf Riebesell
Biogeosciences, 14, 3603–3613, https://doi.org/10.5194/bg-14-3603-2017, https://doi.org/10.5194/bg-14-3603-2017, 2017
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The main goal of this study was to understand if, similarly to the fossil record, high quantities of toxic metals induce coccolith dwarfism in coccolithophore species. We investigated, for the first time, the effects of trace metals on coccolithophore species other than E. huxleyi and on coccolith morphology and size. Our data show a species-specific sensitivity to trace metal concentration, allowing the recognition of the most-, intermediate- and least-tolerant taxa to trace metal enrichments.
Lennart J. de Nooijer, Anieke Brombacher, Antje Mewes, Gerald Langer, Gernot Nehrke, Jelle Bijma, and Gert-Jan Reichart
Biogeosciences, 14, 3387–3400, https://doi.org/10.5194/bg-14-3387-2017, https://doi.org/10.5194/bg-14-3387-2017, 2017
Michael J. Henehan, David Evans, Madison Shankle, Janet E. Burke, Gavin L. Foster, Eleni Anagnostou, Thomas B. Chalk, Joseph A. Stewart, Claudia H. S. Alt, Joseph Durrant, and Pincelli M. Hull
Biogeosciences, 14, 3287–3308, https://doi.org/10.5194/bg-14-3287-2017, https://doi.org/10.5194/bg-14-3287-2017, 2017
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It is still unclear whether foraminifera (calcifying plankton that play an important role in cycling carbon) will have difficulty in making their shells in more acidic oceans, with different studies often reporting apparently conflicting results. We used live lab cultures, mathematical models, and fossil measurements to test this question, and found low pH does reduce calcification. However, we find this response is likely size-dependent, which may have obscured this response in other studies.
Cited articles
Australian Institute of Marine Science (AIMS): Coral calcification in massive Porites of the Great Barrier Reef, over a 400 year period, available at: http://data.aims.gov.au/metadataviewer/uuid/ff433c10-ea4d-11dc-823c-00008a07204e (last access: 30 January 2014), 2014a.
Australian Institute of Marine Science (AIMS): Growth of Western Australian corals in the Anthropocene, available at: http://data.aims.gov.au/metadataviewer/uuid/4f39c641-8450-4ea0-b2b6-4f3d582645f8 (last access: 14 Febuary 2014), 2014b.
Albright, R., Langdon, C., and Anthony, K. R. N.: Dynamics of seawater carbonate chemistry, production, and calcification of a coral reef flat, central Great Barrier Reef, Biogeosciences, 10, 6747–6758, https://doi.org/10.5194/bg-10-6747-2013, 2013.
Allemand, D., Tambutté, É., Zoccola, D., and Tambutte, S.: Coral calcification, cells to reefs, in: Coral reefs: an ecosystem in transition, edited by: Dubinsky, Z. and Stambler, N., Springer, Dordrecht, Netherlands, 119–150, 2011.
Almany, G. R., Connolly, S. R., Heath, D. D., Hogan, J. D., Jones, G. P., McCook, L. J., Mills, M., Pressey, R. L., and Williamson, D. H.: Connectivity, biodiversity conservation and the design of marine reserve networks for coral reefs, Coral Reefs, 28, 339–351, 2009.
Andersson, A. J. and Gledhill, D.: Ocean acidification and coral reefs: effects on breakdown, dissolution, and net ecosystem calcification, Annu. Rev. Mar. Sci., 5, 321–348, 2013.
Anthony, K. R. N., Kline, D. I., Diaz-Pulido, G., Dove, S., and Hoegh-Guldberg, O.: Ocean acidification causes bleaching and productivity loss in coral reef builders, P. Natl. Acad. Sci. USA, 105, 17442–17446, 2008.
Anthony, K. R. N., Kleypas, J. A., and Gattuso, J.-P.: Coral reefs modify their seawater carbon chemistry – implications for impacts of ocean acidification, Glob. Change Biol., 17, 3655–3666, 2011.
Antonov, J. I., Seidov, D., Boyer, T. P., Locarnini, R. A., Mishonov, A. V., Garcia, H. E., Baranova, O. K., Zweng, M. M., and Johnson, D. R.: World Ocean Atlas 2009, volume 2: salinity, in: NOAA Atlas NESDIS 69, edited by: Levitus, S., U.S. Government Printing Office, Washington, D.C., 1–184, 2010.
Ateweberhan, M. and McClanahan, T. R.: Relationship between historical sea-surface temperature variability and climate change-induced coral mortality in the western Indian Ocean, Mar. Pollut. Bull., 60, 964–970, 2010.
Baker, A. C., Glynn, P. W., and Riegl, B.: Climate change and coral reef bleaching: an ecological assessment of long-term impacts, recovery trends and future outlook, Estuar. Coast. Shelf S., 80, 435–471, 2008.
Barnes, D. J.: Coral skeletons – an explanation of their growth and structure, Science, 170, 1305–1308, 1970.
Barnes, D. J. and Chalker, B. E.: Calcification and photosynthesis in reef-building corals and algae, in: Ecosystems of the World, 25: coral reefs, edited by: Dubinsky, Z., Elsevier Science Publishing Company, Amsterdam, The Netherlands, 109–131, 1990.
Barnes, D. J. and Crossland, C. J.: Diurnal and seasonal variation in the growth of staghorn coral measured by time-lapse photography, Limnol. Oceanogr., 25, 1113–1117, 1980.
Barnes, D. S., Brauer, R. W., and Jordan, M. R.: Locomotory response of Acanthaster planci to various species of coral, Nature, 228, 342–344, 1970.
Bates, N. R., Amat, A., and Andersson, A. J.: Feedbacks and responses of coral calcification on the Bermuda reef system to seasonal changes in biological processes and ocean acidification, Biogeosciences, 7, 2509–2530, https://doi.org/10.5194/bg-7-2509-2010, 2010.
Bishop, J. K. B. and Rossow, W. B.: Spatial and temporal variability of global surface solar irradiance, J. Geophys. Res.-Oceans, 96, 16839–16858, 1991.
Bishop, J. K. B., Rossow, W. B., and Dutton, E. G.: Surface solar irradiance from the International Satellite Cloud Climatology Project 1983-1991, J. Geophys. Res.-Atmos., 102, 6883–6910, 1997.
Boucher, G., Clavier, J., Hily, C., and Gattuso, J.-P.: Contribution of soft-bottoms to the community metabolism (primary production and calcification) of a barrier reef flat (Moorea, French Polynesia), J. Exp. Mar. Biol. Ecol., 225, 269–283, 1998.
Bruno, J. and Selig, E.: Regional decline of coral cover in the Indo-Pacific: timing, extent, and subregional comparisons, PloS one, 2, e711, https://doi.org/10.1371/journal.pone.0000711, 2007.
Bruno, J. F., Precht, W. F., Vroom, P. S., and Aronson, R. B.: Coral reef baselines: how much macroalgae is natural?, Mar. Pollut. Bull., 80, 24–29, 2014.
Buddemeier, R. W. and Kinzie, R. A.: Coral growth, Oceanogr. Mar. Biol. Ann. Rev., 14, 183–225, 1976.
Burton, E. A. and Walter, L. M.: Relative precipitation rates of aragonite and Mg calcite from seawater: temperature or carbonate ion control?, Geology, 15, 111–114, 1987.
Cantin, N. E., Cohen, A. L., Karnauskas, K. B., Tarrant, A. M., and McCorkle, D. C.: Ocean warming slows coral growth in the central Red Sea, Science, 329, 322–325, 2010.
Carricart-Ganivet, J. P. and Merino, M.: Growth responses of the reef-building coral Montastraea annularis along a gradient of continental influence in the southern Gulf of Mexico, Bull. Mar. Sci., 68, 133–146, 2001.
Chalker, B. E.: Calcium-transport during skeletogenesis in hermatypic corals, Comp. Biochem. Phys. A, 54, 455–459, 1976.
Chalker, B. E.: Simulating light-saturation curves for photosynthesis and calcification by reef-building corals, Mar. Biol., 63, 135–141, 1981.
Chave, K. E., Smith, S. V., and Roy, K. J.: Carbonate production by coral reefs, Mar. Geol., 12, 123–140, 1972.
Chen, T., Yu, K., Shi, Q., Chen, T., and Wang, R.: Effect of global warming and thermal effluents on calcification of the Porites coral in Daya Bay, northern South China Sea, J. Trop. Oceanogr., 30, 1–9, 2011.
Clausen, C. D. and Roth, A. A.: Effect of temperature and temperature adaptation on calcification rate in the hermatypic coral Pocillopora damicornis, Mar. Biol., 33, 93–100, 1975.
Coles, S. L. and Jokiel, P. L.: Effects of salinity on coral reefs, in: Pollution in tropical aquatic systems, edited by: Connell, D. W. and Hawker, D. W., CRC Press, London, 147–166, 1992.
Colombo-Pallotta, M. F., Rodriguez-Roman, A., and Iglesias-Prieto, R.: Calcification in bleached and unbleached Montastraea faveolata: evaluating the role of oxygen and glycerol, Coral Reefs, 29, 899–907, 2010.
Constantz, B. R.: Coral skeleton construction a physiochemically dominated process, Palaios, 1, 152–157, 1986.
Cooper, T. F., De'ath, G., Fabricius, K. E., and Lough, J. M.: Declining coral calcification in massive Porites in two nearshore regions of the northern Great Barrier Reef, Glob. Change Biol., 14, 529–538, 2008.
Cooper, T. F., O'Leary, R. A., and Lough, J. M.: Growth of Western Australian corals in the Anthropocene, Science, 335, 593–596, 2012.
Couce, E., Ridgwell, A., and Hendy, E. J.: Environmental controls on the global distribution of shallow-water coral reefs, J. Biogeogr., 39, 1508–1523, 2012.
Couce, E., Ridgwell, A., and Hendy, E. J.: Future habitat suitability for coral reef ecosystems under global warming and ocean acidification, Glob. Change Biol., 19, 3592–3606, 2013.
Crossland, C. J.: Seasonal-variations in the rates of calcification and productivity in the coral Acropora formosa on a high-latitude reef, Mar. Ecol. Prog. Ser., 15, 135–140, 1984.
Dar, M. A. and Mohammed, T. A.: Seasonal variations in the skeletogensis process in some branching corals in the Red Sea, Thalassas, 25, 31–44, 2009.
De'ath, G., Lough, J. M., and Fabricius, K. E.: Declining coral calcification on the Great Barrier Reef, Science, 323, 116–119, 2009.
De'ath, G., Fabricius, K., and Lough, J.: Yes – coral calcification rates have decreased in the last twenty-five years!, Mar. Geol., 346, 400–402, 2013.
Donner, S. D., Skirving, W. J., Little, C. M., Oppenheimer, M., and Hoegh-Guldberg, O.: Global assessment of coral bleaching and required rates of adaptation under climate change, Glob. Change Biol., 11, 2251–2265, 2005.
Eakin, C. M.: Where have all the carbonates gone?, A model comparison of calcium carbonate budgets before and after the 1982–1983 El Niño at Uva Island in the eastern Pacific, Coral Reefs, 15, 109–119, 1996.
Edinger, E. N., Limmon, G. V., Jompa, J., Widjatmoko, W., Heikoop, J. M., and Risk, M. J.: Normal coral growth rates on dying reefs: are coral growth rates good indicators of reef health?, Mar. Pollut. Bull., 40, 404–425, 2000.
Erez, J., Reynaud, S., Silverman, J., Schneider, K., and Allemand, D.: Coral calcification under ocean acidification and global change, in: Coral reefs: an ecosystem in transition, edited by: Dubinsky, Z. and Stambler, N., Springer, Dordrecht, Netherlands, 151–176, 2011.
Fabricius, K. E., Langdon, C., Uthicke, S., Humphrey, C., Noonan, S., De'ath, G., Okazaki, R., Muehllehner, N., Glas, M. S., and Lough, J. M.: Losers and winners in coral reefs acclimatized to elevated carbon dioxide concentrations, Nat. Clim. Change, 1, 165–169, 2011.
Frieler, K., Meinshausen, M., Golly, A., Mengel, M., Lebek, K., Donner, S. D., and Hoegh-Guldberg, O.: Limiting global warming to 2 °C is unlikely to save most coral reefs, Nat. Clim. Change, 3, 165-170, 2013.
Gattuso, J.-P., Pichon, M., Delesalle, B., and Frankignoulle, M.: Community metabolism and air-sea CO2 fluxes in a coral-reef ecosystem (Moorea, French Polynesia), Mar. Ecol. Prog. Ser., 96, 259–267, 1993.
Gattuso, J.-P., Pichon, M., Delesalle, B., Canon, C., and Frankignoulle, M.: Carbon fluxes in coral reefs. I. Lagrangian measurement of community metabolism and resulting air-sea CO2 disequilibrium, Mar. Ecol. Prog. Ser., 145, 109–121, 1996.
Gattuso, J.-P., Payri, C. E., Pichon, M., Delesalle, B., and Frankignoulle, M.: Primary production, calcification, and air-sea CO2 fluxes of a macroalgal-dominated coral reef community (Moorea, French Polynesia), J. Phycol., 33, 729–738, 1997.
Gattuso, J.-P., Frankignoulle, M., and Wollast, R.: Carbon and carbonate metabolism in coastal aquatic ecosystems, Annu. Rev. Ecol. Syst., 29, 405–434, 1998.
Gattuso, J.-P., Allemand, D., and Frankignoulle, M.: Photosynthesis and calcification at cellular, organismal and community levels in coral reefs: a review on interactions and control by carbonate chemistry, Am. Zool., 39, 160–183, 1999.
Gladfelter, E. H.: Skeletal development in Acropora cervicornis: 3. a comparison of monthly rates of linear extension and calcium-carbonate accretion measured over a year, Coral Reefs, 3, 51–57, 1984.
Glynn, P. W., Wellington, G. M., and Birkeland, C.: Coral reef growth in the Galapagos: limitation by sea urchins, Science, 203, 47–49, 1979.
Grigg, R. W.: Darwin Point: a threshold for atoll formation, Coral Reefs, 1, 29–34, 1982.
Harney, J. N. and Fletcher, C. H.: A budget of carbonate framework and sediment production, Kailua Bay, Oahu, Hawaii, J. Sediment. Res., 73, 856–868, 2003.
Harris, P. T., Heap, A. D., Wassenberg, T., and Passlow, V.: Submerged coral reefs in the Gulf of Carpentaria, Australia, Mar. Geol., 207, 185–191, 2004.
Harris, P. T., Heap, A. D., Marshall, J. F., and McCulloch, M.: A new coral reef province in the Gulf of Carpentaria, Australia: colonisation, growth and submergence during the early Holocene, Mar. Geol., 251, 85–97, 2008.
Hart, D. E. and Kench, P. S.: Carbonate production of an emergent reef platform, Warraber Island, Torres Strait, Australia, Coral Reefs, 26, 53–68, 2007.
Hatcher, B. G.: Coral reef ecosystems: how much greater is the whole than the sum of the parts?, Coral Reefs, 16, S77–S91, 1997.
Haxeltine, A. and Prentice, I. C.: BIOME3: an equilibrium terrestrial biosphere model based on ecophysiological constraints, resource availability, and competition among plant functional types, Global Biogeochem. Cy., 10, 693–709, 1996.
Heiss, G. A.: Carbonate production by scleractinian corals at Aqaba, Gulf of Aqaba, Red Sea, Facies, 33, 19–34, 1995.
Hendy, E. J., Lough, J. M., and Gagan, M. K.: Historical mortality in massive Porites from the central Great Barrier Reef, Australia: evidence for past environmental stress?, Coral Reefs, 22, 207–215, 2003.
Hodgson, G. and Liebeler, J.: The global coral reef crisis: trends and solutions 1997–2001, Reef Check, California, USA, available at: http://reefcheck.org/about_RC_Reef/publications/Reef Check Report.pdf/Reef Check 5 Year Report.pdf (last access: 23 February 2015), 2002.
Hoegh-Guldberg, O.: Coral reef ecosystems and anthropogenic climate change, Reg. Environ. Change, 11, S215–S227, 2011.
Hoegh-Guldberg, O., Mumby, P. J., Hooten, A. J., Steneck, R. S., Greenfield, P., Gomez, E., Harvell, C. D., Sale, P. F., Edwards, A. J., Caldeira, K., Knowlton, N., Eakin, C. M., Iglesias-Prieto, R., Muthiga, N., Bradbury, R. H., Dubi, A., and Hatziolos, M. E.: Coral reefs under rapid climate change and ocean acidification, Science, 318, 1737–1742, 2007.
Hohn, S. and Merico, A.: Modelling coral polyp calcification in relation to ocean acidification, Biogeosciences, 9, 4441–4454, 2012.
Hubbard, D. K., Miller, A. I., and Scaturo, D.: Production and cycling of calcium carbonate in a shelf-edge reef system (St Croix, United States Virgin Islands): applications to the nature of reef systems in the fossil record, J. Sediment. Petrol., 60, 335–360, 1990.
Johnson, M. D. and Carpenter, R. C.: Ocean acidification and warming decrease calcification in the crustose coralline alga Hydrolithon onkodes and increase susceptibility to grazing, J. Exp. Mar. Biol. Ecol., 434, 94–101, 2012.
Johnson, M. D., Moriarty, V. W., and Carpenter, R. C.: Acclimatization of the crustose coralline alga Porolithon onkodes to variable pCO2, Plos One, 9, e87678, https://doi.org/10.1371/journal.pone.0087678, 2014.
Jokiel, P. L. and Coles, S. L.: Effects of temperature on the mortality and growth of Hawaiian reef corals, Mar. Biol., 43, 201–208, 1977.
Jones, G. P., Almany, G. R., Russ, G. R., Sale, P. F., Steneck, R. S., van Oppen, M. J. H., and Willis, B. L.: Larval retention and connectivity among populations of corals and reef fishes: history, advances and challenges, Coral Reefs, 28, 307–325, 2009.
Kayanne, H., Suzuki, A., and Saito, H.: Diurnal changes in the partial pressure of carbon dioxide in coral reef water, Science, 269, 214–216, 1995.
Kleypas, J. A.: Modeled estimates of global reef habitat and carbonate production since the last glacial maximum, Paleoceanography, 12, 533–545, 1997.
Kleypas, J. A. and Langdon, C.: Coral reefs and changing seawater carbonate chemistry. In: Coral reefs and climate change: science and management, AGU, Washington, DC, 73–110, 2006.
Kleypas, J. A. and Yates, K. K.: Coral reefs and ocean acidification, Oceanography, 22, 108–117, 2009.
Kleypas, J. A., Buddemeier, R. W., Archer, D., Gattuso, J.-P., Langdon, C., and Opdyke, B. N.: Geochemical consequences of increased atmospheric carbon dioxide on coral reefs, Science, 284, 118–120, 1999.
Kleypas, J. A., Buddemeier, R. W., Eakin, C. M., Gattuso, J.-P., Guinotte, J., Hoegh-Guldberg, O., Iglesias-Prieto, R., Jokiel, P. L., Langdon, C., Skirving, W., and Strong, A. E.: Comment on "Coral reef calcification and climate change: the effect of ocean warming", Geophys. Res. Lett., 32, L08601, https://doi.org/10.1029/2004gl022329, 2005.
Kleypas, J. A., Anthony, K. R. N., and Gattuso, J.-P.: Coral reefs modify their seawater carbon chemistry – case study from a barrier reef (Moorea, French Polynesia), Glob. Change Biol., 17, 3667–3678, 2011.
Knutson, D. W., Smith, S. V., and Buddemeier, R. W.: Coral chronometers: seasonal growth bands in reef corals, Science, 177, 270–272, 1972.
Lamont-Doherty Earth Observatory, C. U.: Bishop's high-resolution (DX) surface solar irradiance derived. Research data archive at the National Center for Atmospheric Research, Computational and Information Systems Laboratory, available at: http://rda.ucar.edu/datasets/ds741.1/ (last access: 4 February 2013), 2000.
Land, L. S.: The fate of reef-derived sediment on the northern Jamaican island slope, Mar. Geol., 29, 55–71, 1979.
Langdon, C., Takahashi, T., Sweeney , C., Chipman, D., Goddard, J., Marubini, F., Aceves, H., Barnett, H., and Atkinson, M., J.: Effect of calcium carbonate saturation state on the calcification rate of an experimental coral reef, Global Biogeochem. Cy., 14, 639–654, 2000.
Lantz, C. A., Atkinson, M. J., Winn, C. W., and Kahng, S. E.: Dissolved inorganic carbon and total alkalinity of a Hawaiian fringing reef: chemical techniques for monitoring the effects of ocean acidification on coral reefs, Coral Reefs, 33, 105–115, 2014.
Locarnini, R. A., Mishonov, A. V., Antonov, J. I., Boyer, T. P., Garcia, H. E., Baranova, O. K., Zweng, M. M., and Johnson, D. R.: World Ocean Atlas 2009, volume 1: temperature, in: NOAA Atlas NESDIS 68, edited by: Levitus, S., U.S. Government Printing Office, Washington, D.C., 1–184, 2010.
Lough, J. M.: Coral calcification from skeletal records revisited, Mar. Ecol. Prog. Ser., 373, 257–264, 2008.
Lough, J. M. and Barnes, D. J.: Environmental controls on growth of the massive coral Porites, J. Exp. Mar. Biol. Ecol., 245, 225–243, 2000.
Loya, Y., Sakai, K., Yamazato, K., Nakano, Y., Sambali, H., and van Woesik, R.: Coral bleaching: the winners and the losers, Ecol. Lett., 4, 122–131, 2001.
Mallela, J.: Coral reef encruster communities and carbonate production in cryptic and exposed coral reef habitats along a gradient of terrestrial disturbance, Coral Reefs, 26, 775–785, 2007.
Manzello, D. P.: Coral growth with thermal stress and ocean acidification: lessons from the eastern tropical Pacific, Coral Reefs, 29, 749–758, 2010.
Marshall, A. T. and Clode, P.: Calcification rate and the effect of temperature in a zooxanthellate and an azooxanthellate scleractinian reef coral, Coral Reefs, 23, 218–224, 2004.
McClanahan, T. R., Ateweberhan, M., Muhando, C. A., Maina, J., and Mohammed, M. S.: Effects of climate and seawater temperature variation on coral bleaching and mortality, Ecol. Monogr., 77, 503–525, 2007.
McMahon, A., Santos, I. R., Cyronak, T., and Eyre, B. D.: Hysteresis between coral reef calcification and the seawater aragonite saturation state, Geophys. Res. Lett., 40, 4675–4679, 2013.
McNeil, B. I., Matear, R. J., and Barnes, D. J.: Coral reef calcification and climate change: the effect of ocean warming, Geophys. Res. Lett., 31, L22309, https://doi.org/10.1029/2004GL021541, 2004.
McWilliams, J. P., Cote, I. M., Gill, J. A., Sutherland, W. J., and Watkinson, A. R.: Accelerating impacts of temperature-induced coral bleaching in the Caribbean, Ecology, 86, 2055–2060, 2005.
Milliman, J. D.: Production and accumulation of calcium carbonate in the ocean: budget of a non-steady state, Global Biogeochem. Cy., 7, 927–957, 1993.
Montaggioni, L. F.: History of Indo-Pacific coral reef systems since the last glaciation: development patterns and controlling factors, Earth-Sci. Rev., 71, 1–75, 2005.
Nakamori, T., Suzuki, A., and Iryu, Y.: Water circulation and carbon flux on Shiraho coral reef of the Ryukyu Islands, Japan, Cont. Shelf Res., 12, 951–970, 1992.
Nakamura, T. and Nakamori, T.: A geochemical model for coral reef formation, Coral Reefs, 26, 741–755, 2007.
Nakamura, T. and Nakamori, T.: Estimation of photosynthesis and calcification rates at a fringing reef by accounting for diurnal variations and the zonation of coral reef communities on reef flat and slope: a case study for the Shiraho reef, Ishigaki Island, southwest Japan, Coral Reefs, 28, 229–250, 2009.
Ohde, S. and van Woesik, R.: Carbon dioxide flux and metabolic processes of a coral reef, Okinawa, Bull. Mar. Sci., 65, 559–576, 1999.
Opdyke, B. N. and Walker, J. C. G.: Return of the coral reef hypothesis: basin to shelf partitioning of CaCO3 and its effect in atmospheric CO2, Geology, 20, 733–736, 1992.
Perry, C. T.: Carbonate budgets and reef framework accumulation, in: Encyclopedia of modern coral reefs: structure, form and process, edited by: Hopley, D., Springer, Netherlands, 185–190, 2011.
Perry, C. T., Spencer, T., and Kench, P. S.: Carbonate budgets and reef production states: a geomorphic perspective on the ecological phase-shift concept, Coral Reefs, 27, 853–866, 2008.
Perry, C. T., Edinger, E. N., Kench, P. S., Murphy, G. N., Smithers, S. G., Steneck, R. S., and Mumby, P. J.: Estimating rates of biologically driven coral reef framework production and erosion: a new census-based carbonate budget methodology and applications to the reefs of Bonaire, Coral Reefs, 31, 853–868, 2012.
Perry, C. T., Murphy, G. N., Kench, P. S., Smithers, S. G., Edinger, E. N., Steneck, R. S., and Mumby, P. J.: Caribbean-wide decline in carbonate production threatens coral reef growth, Nature Communications, 4, 1–8, https://doi.org/10.1038/ncomms2409, 2013.
Poulsen, A., Burns, K., Lough, J., Brinkman, D., and Delean, S.: Trace analysis of hydrocarbons in coral cores from Saudi Arabia, Org. Geochem., 37, 1913–1930, 2006.
Puverel, S., Tambutte, E., Zoccola, D., Domart-Coulon, I., Bouchot, A., Lotto, S., Allemand, D., and Tambutte, S.: Antibodies against the organic matrix in scleractinians: a new tool to study coral biomineralization, Coral Reefs, 24, 149–156, 2005.
Rayner, N. A., Parker, D. E., Horton, E. B., Folland, C. K., Alexander, L. V., Rowell, D. P., Kent, E. C., and Kaplan, A.: Global analyses of sea surface temperature, sea ice, and night marine air temperature since the late nineteenth century, J. Geophys. Res.-Atmos., 108, 4407, https://doi.org/10.1029/2002JD002670, 2003.
Reynaud-Vaganay, S., Gattuso, J. P., Cuif, J. P., Jaubert, J., and Juillet-Leclerc, A.: A novel culture technique for scleractinian corals: application to investigate changes in skeletal δ18O as a function of temperature, Mar. Ecol. Prog. Ser., 180, 121–130, 1999.
Sadd, J. L.: Sediment transport and CaCO3 budget on a fringing-reef, Cane Bay, St Croix, United States Virgin Islands, Bull. Mar. Sci., 35, 221–238, 1984.
Schmittner, A., Oschlies, A., Matthews, H. D., and Galbraith, E. D.: Future changes in climate, ocean circulation, ecosystems, and biogeochemical cycling simulated for a business-as-usual CO2 emission scenario until year 4000 AD, Global Biogeochem. Cy., 23, Gb3005, https://doi.org/10.1029/2009GB003577, 2009.
Scoffin, T. P., Tudhope, A. W., Brown, B. E., Chansang, H., and Cheeney, R. F.: Patterns and possible environmental controls of skeletogenesis of Porites lutea, South Thailand, Coral Reefs, 11, 1–11, 1992.
Shamberger, K. E. F., Feely, R. A., Sabine, C. L., Atkinson, M. J., DeCarlo, E. H., Mackenzie, F. T., Drupp, P. S., and Butterfield, D. A.: Calcification and organic production on a Hawaiian coral reef, Mar. Chem., 127, 64–75, 2011.
Shi, Q., Yu, K. F., Chen, T. R., Zhang, H. L., Zhao, M. X., and Yan, H. Q.: Two centuries-long records of skeletal calcification in massive Porites colonies from Meiji Reef in the southern South China Sea and its responses to atmospheric CO2 and seawater temperature, Science China-Earth Sciences, 55, 1–12, 2012.
Silverman, J., Lazar, B., and Erez, J.: Effect of aragonite saturation, temperature, and nutrients on the community calcification rate of a coral reef, J. Geophys. Res.-Oceans, 112, C05004, https://doi.org/10.1029/2006jc003770, 2007.
Silverman, J., Lazar, B., Cao, L., Caldeira, K., and Erez, J.: Coral reefs may start dissolving when atmospheric CO2 doubles, Geophys. Res. Lett., 36, L05606, https://doi.org/10.01029/02008gl036282, 2009.
Smith, S. V.: Coral-reef area and the contributions of reefs to processes and resources of the world's oceans, Nature, 273, 225–226, 1978.
Smith, S. V. and Harrison, J. T.: Calcium carbonate production of the mare incognitum, the upper windward reef slope, at Enewetak Atoll, Science, 197, 556–559, 1977.
Smith, S. V. and Kinsey, D. W.: Calcium-carbonate production, coral-reef growth, and sea-level change, Science, 194, 937–939, 1976.
Smith, S. V. and Pesret, F.: Processes of carbon dioxide flux in the Fanning Island lagoon, Pac. Sci., 28, 225–245, 1974.
Spalding, M. D. and Grenfell, A. M.: New estimates of global and regional coral reef areas, Coral Reefs, 16, 225–230, 1997.
Spalding, M. D., Ravilious, C., and Green, E. P.: World atlas of coral reefs, Prepared at the UNEP World Conservation Monitoring Centre, University of California Press, Berkeley, USA, 424 pp., 2001.
Stearn, C. W., Scoffin, T. P., and Martindale, W.: Calcium-carbonate budget of a fringing reef on the West coast of Barbados: 1. zonation and productivity, Bull. Mar. Sci., 27, 479–510, 1977.
Steiner, Z., Erez, J., Shemesh, A., Yam, R., Katz, A., and Lazar, B.: Basin-scale estimates of pelagic and coral reef calcification in the Red Sea and Western Indian Ocean, Proceedings of the National Academy of Sciences, 111, 16303–16308, 2014.
Suzuki, A., Nakamori, T., and Kayanne, H.: The mechanisms of production enhancement in coral-reef carbonate systems – model and empirical results, Sediment. Geol., 99, 259–280, 1995.
Tambutté, S., Holcomb, M., Ferrier-Pagès, C., Reynaud, S., Tambutté, É., Zoccola, D., and Allemand, D.: Coral biomineralization: from the gene to the environment, J. Exp. Mar. Biol. Ecol., 408, 58–78, 2011.
Tanzil, J. T., Brown, B. E., Dunne, R. P., Lee, J. N., Kaandorp, J. A., and Todd, P. A.: Regional decline in growth rates of massive Porites corals in Southeast Asia, Glob. Change Biol., 19, 3011–3023, 2013.
Turley, C., Eby, M., Ridgwell, A. J., Schmidt, D. N., Findlay, H. S., Brownlee, C., Riebesell, U., Fabry, V. J., Feely, R. A., and Gattuso, J.-P.: The societal challenge of ocean acidification, Mar. Pollut. Bull., 60, 787–792, 2010.
Vecsei, A.: Fore-reef carbonate production: development of a regional census-based method and first estimates, Palaeogeogr. Palaeocl., 175, 185–200, 2001.
Vecsei, A.: A new estimate of global reefal carbonate production including the fore-reefs, Global Planet. Change, 43, 1–18, 2004.
Vroom, P. S.: Coral dominance: a dangerous ecosystem misnomer?, J. Mar. Biol., 2011, 164127, https://doi.org/10.1155/2011/164127, 2011.
Weaver, A. J., Eby, M., Wiebe, E. C., Bitz, C. M., Duffy, P. B., Ewen, T. L., Fanning, A. F., Holland, M. M., MacFadyen, A., Matthews, H. D., Meissner, K. J., Saenko, O., Schmittner, A., Wang, H. X., and Yoshimori, M.: The UVic Earth system climate model: model description, climatology, and applications to past, present and future climates, Atmos. Ocean, 39, 361–428, 2001.
Wood, S., Paris, C. B., Ridgwell, A., and Hendy, E. J.: Modelling dispersal and connectivity of broadcast spawning corals at the global scale, Global Ecol. Biogeogr., 23, 1–11, 2014.
Short summary
Production of calcium carbonate by coral reefs is important in the global carbon cycle. Using a global framework we evaluate four models of reef calcification against observed values. The temperature-only model showed significant skill in reproducing coral calcification rates. The absence of any predictive power for whole reef systems highlights the importance of coral cover and the need for an ecosystem modelling approach accounting for population dynamics in terms of mortality and recruitment.
Production of calcium carbonate by coral reefs is important in the global carbon cycle. Using a...
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