Articles | Volume 12, issue 23
https://doi.org/10.5194/bg-12-7071-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-12-7071-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
08 Dec 2015
Research article |
| 08 Dec 2015
Hydroxy fatty acids in fresh snow samples from northern Japan: long-range atmospheric transport of Gram-negative bacteria by Asian winter monsoon
P. Tyagi
Graduate School of Environmental Science, Hokkaido University, Sapporo, Japan
Institute of Low Temperature Science, Hokkaido University, Sapporo, Japan
S. Yamamoto
Institute of Low Temperature Science, Hokkaido University, Sapporo, Japan
now at: Mount Fuji Research Institute, Yamanashi, Japan
K. Kawamura
CORRESPONDING AUTHOR
Institute of Low Temperature Science, Hokkaido University, Sapporo, Japan
Related authors
No articles found.
Yuhao Cui, Eri Tachibana, Kimitaka Kawamura, and Yuzo Miyazaki
Biogeosciences, 20, 4969–4980, https://doi.org/10.5194/bg-20-4969-2023, https://doi.org/10.5194/bg-20-4969-2023, 2023
Short summary
Short summary
Fatty alcohols (FAs) are major components of surface lipids in plant leaves and serve as surface-active aerosols. Our study on the aerosol size distributions in a forest suggests that secondary FAs (SFAs) originated from plant waxes and that leaf senescence status is likely an important factor controlling the size distribution of SFAs. This study provides new insights into the sources of primary biological aerosol particles (PBAPs) and their effects on the aerosol ice nucleation activity.
Jingjing Meng, Yachen Wang, Yuanyuan Li, Tonglin Huang, Zhifei Wang, Yiqiu Wang, Min Chen, Zhanfang Hou, Houhua Zhou, Keding Lu, Kimitaka Kawamura, and Pingqing Fu
Atmos. Chem. Phys., 23, 14481–14503, https://doi.org/10.5194/acp-23-14481-2023, https://doi.org/10.5194/acp-23-14481-2023, 2023
Short summary
Short summary
This study investigated the effect of COVID-19 lockdown (LCD) measures on the formation and evolutionary process of diacids and related compounds from field observations. Results demonstrate that more aged organic aerosols are observed during the LCD due to the enhanced photochemical oxidation. Our study also found that the reactivity of 13C was higher than that of 12C in the gaseous photochemical oxidation, leading to higher δ13C values of C2 during the LCD than before the LCD.
Shujun Zhong, Shuang Chen, Junjun Deng, Yanbing Fan, Qiang Zhang, Qiaorong Xie, Yulin Qi, Wei Hu, Libin Wu, Xiaodong Li, Chandra Mouli Pavuluri, Jialei Zhu, Xin Wang, Di Liu, Xiaole Pan, Yele Sun, Zifa Wang, Yisheng Xu, Haijie Tong, Hang Su, Yafang Cheng, Kimitaka Kawamura, and Pingqing Fu
Atmos. Chem. Phys., 23, 2061–2077, https://doi.org/10.5194/acp-23-2061-2023, https://doi.org/10.5194/acp-23-2061-2023, 2023
Short summary
Short summary
This study investigated the role of the secondary organic aerosol (SOA) loading on the molecular composition of wintertime urban aerosols by ultrahigh-resolution mass spectrometry. Results demonstrate that the SOA loading is an important factor associated with the oxidation degree, nitrate group content, and chemodiversity of nitrooxy–organosulfates. Our study also found that the hydrolysis of nitrooxy–organosulfates is a possible pathway for the formation of organosulfates.
Junjun Deng, Hao Ma, Xinfeng Wang, Shujun Zhong, Zhimin Zhang, Jialei Zhu, Yanbing Fan, Wei Hu, Libin Wu, Xiaodong Li, Lujie Ren, Chandra Mouli Pavuluri, Xiaole Pan, Yele Sun, Zifa Wang, Kimitaka Kawamura, and Pingqing Fu
Atmos. Chem. Phys., 22, 6449–6470, https://doi.org/10.5194/acp-22-6449-2022, https://doi.org/10.5194/acp-22-6449-2022, 2022
Short summary
Short summary
Light-absorbing brown carbon (BrC) plays an important role in climate change and atmospheric chemistry. Here we investigated the seasonal and diurnal variations in water-soluble BrC in PM2.5 in the megacity Tianjin in coastal China. Results of the source apportionments from the combination with organic molecular compositions and optical properties of water-soluble BrC reveal a large contribution from primary bioaerosol particles to BrC in the urban atmosphere.
Yange Deng, Hiroaki Fujinari, Hikari Yai, Kojiro Shimada, Yuzo Miyazaki, Eri Tachibana, Dhananjay K. Deshmukh, Kimitaka Kawamura, Tomoki Nakayama, Shiori Tatsuta, Mingfu Cai, Hanbing Xu, Fei Li, Haobo Tan, Sho Ohata, Yutaka Kondo, Akinori Takami, Shiro Hatakeyama, and Michihiro Mochida
Atmos. Chem. Phys., 22, 5515–5533, https://doi.org/10.5194/acp-22-5515-2022, https://doi.org/10.5194/acp-22-5515-2022, 2022
Short summary
Short summary
Offline analyses of the hygroscopicity and composition of atmospheric aerosols are complementary to online analyses in view of the applicability to broader sizes, specific compound groups, and investigations at remote sites. This offline study characterized the composition of water-soluble matter in aerosols and their humidity-dependent hygroscopicity on Okinawa, a receptor site of East Asian outflow. Further, comparison with online analyses showed the appropriateness of the offline method.
Md. Mozammel Haque, Yanlin Zhang, Srinivas Bikkina, Meehye Lee, and Kimitaka Kawamura
Atmos. Chem. Phys., 22, 1373–1393, https://doi.org/10.5194/acp-22-1373-2022, https://doi.org/10.5194/acp-22-1373-2022, 2022
Short summary
Short summary
We attempt to understand the current state of East Asian organic aerosols with both the molecular marker approach and 14° C data of carbonaceous components. A significant positive correlation of nonfossil- and fossil-derived organic carbon with levoglucosan suggests the importance of biomass burning (BB) and coal combustion sources in the East Asian outflow. Thus, attribution of ambient levoglucosan levels over the western North Pacific to the impact of BB emission may cause large uncertainty.
Hong Ren, Wei Hu, Lianfang Wei, Siyao Yue, Jian Zhao, Linjie Li, Libin Wu, Wanyu Zhao, Lujie Ren, Mingjie Kang, Qiaorong Xie, Sihui Su, Xiaole Pan, Zifa Wang, Yele Sun, Kimitaka Kawamura, and Pingqing Fu
Atmos. Chem. Phys., 21, 12949–12963, https://doi.org/10.5194/acp-21-12949-2021, https://doi.org/10.5194/acp-21-12949-2021, 2021
Short summary
Short summary
This study presents vertical profiles of biogenic and anthropogenic secondary organic aerosols (SOAs) in the urban boundary layer based on a 325 m tower in Beijing in late summer. The increases in the isoprene and toluene SOAs with height were found to be more related to regional transport, whereas the decrease in those from monoterpenes and sesquiterpene were more subject to local emissions. Such complicated vertical distributions of SOA should be considered in future modeling work.
Qiaorong Xie, Sihui Su, Jing Chen, Yuqing Dai, Siyao Yue, Hang Su, Haijie Tong, Wanyu Zhao, Lujie Ren, Yisheng Xu, Dong Cao, Ying Li, Yele Sun, Zifa Wang, Cong-Qiang Liu, Kimitaka Kawamura, Guibin Jiang, Yafang Cheng, and Pingqing Fu
Atmos. Chem. Phys., 21, 11453–11465, https://doi.org/10.5194/acp-21-11453-2021, https://doi.org/10.5194/acp-21-11453-2021, 2021
Short summary
Short summary
This study investigated the role of nighttime chemistry during Chinese New Year's Eve that enhances the formation of nitrooxy organosulfates in the aerosol phase. Results show that anthropogenic precursors, together with biogenic ones, considerably contribute to the formation of low-volatility nitrooxy OSs. Our study provides detailed molecular composition of firework-related aerosols, which gives new insights into the physicochemical properties and potential health effects of urban aerosols.
Philippe Massicotte, Rainer M. W. Amon, David Antoine, Philippe Archambault, Sergio Balzano, Simon Bélanger, Ronald Benner, Dominique Boeuf, Annick Bricaud, Flavienne Bruyant, Gwenaëlle Chaillou, Malik Chami, Bruno Charrière, Jing Chen, Hervé Claustre, Pierre Coupel, Nicole Delsaut, David Doxaran, Jens Ehn, Cédric Fichot, Marie-Hélène Forget, Pingqing Fu, Jonathan Gagnon, Nicole Garcia, Beat Gasser, Jean-François Ghiglione, Gaby Gorsky, Michel Gosselin, Priscillia Gourvil, Yves Gratton, Pascal Guillot, Hermann J. Heipieper, Serge Heussner, Stanford B. Hooker, Yannick Huot, Christian Jeanthon, Wade Jeffrey, Fabien Joux, Kimitaka Kawamura, Bruno Lansard, Edouard Leymarie, Heike Link, Connie Lovejoy, Claudie Marec, Dominique Marie, Johannie Martin, Jacobo Martín, Guillaume Massé, Atsushi Matsuoka, Vanessa McKague, Alexandre Mignot, William L. Miller, Juan-Carlos Miquel, Alfonso Mucci, Kaori Ono, Eva Ortega-Retuerta, Christos Panagiotopoulos, Tim Papakyriakou, Marc Picheral, Louis Prieur, Patrick Raimbault, Joséphine Ras, Rick A. Reynolds, André Rochon, Jean-François Rontani, Catherine Schmechtig, Sabine Schmidt, Richard Sempéré, Yuan Shen, Guisheng Song, Dariusz Stramski, Eri Tachibana, Alexandre Thirouard, Imma Tolosa, Jean-Éric Tremblay, Mickael Vaïtilingom, Daniel Vaulot, Frédéric Vaultier, John K. Volkman, Huixiang Xie, Guangming Zheng, and Marcel Babin
Earth Syst. Sci. Data, 13, 1561–1592, https://doi.org/10.5194/essd-13-1561-2021, https://doi.org/10.5194/essd-13-1561-2021, 2021
Short summary
Short summary
The MALINA oceanographic expedition was conducted in the Mackenzie River and the Beaufort Sea systems. The sampling was performed across seven shelf–basin transects to capture the meridional gradient between the estuary and the open ocean. The main goal of this research program was to better understand how processes such as primary production are influencing the fate of organic matter originating from the surrounding terrestrial landscape during its transition toward the Arctic Ocean.
Santosh Kumar Verma, Kimitaka Kawamura, Fei Yang, Pingqing Fu, Yugo Kanaya, and Zifa Wang
Atmos. Chem. Phys., 21, 4959–4978, https://doi.org/10.5194/acp-21-4959-2021, https://doi.org/10.5194/acp-21-4959-2021, 2021
Short summary
Short summary
We studied aerosol samples collected in autumn 2007 with day and night intervals in a rural site of Mangshan, north of Beijing, for sugar compounds (SCs) that are abundant organic aerosol components and can influence the air quality and climate. We found higher concentrations of biomass burning (BB) products at nighttime than daytime, whereas pollen tracers and other SCs showed an opposite diurnal trend, because this site is meteorologically characterized by a mountain/valley breeze.
Wanyu Zhao, Hong Ren, Kimitaka Kawamura, Huiyun Du, Xueshun Chen, Siyao Yue, Qiaorong Xie, Lianfang Wei, Ping Li, Xin Zeng, Shaofei Kong, Yele Sun, Zifa Wang, and Pingqing Fu
Atmos. Chem. Phys., 20, 10331–10350, https://doi.org/10.5194/acp-20-10331-2020, https://doi.org/10.5194/acp-20-10331-2020, 2020
Short summary
Short summary
Our observations provide detailed information on the abundance and vertical distribution of dicarboxylic acids, oxoacids and α-dicarbonyls in PM2.5 collected at three heights based on a 325 m meteorological tower in Beijing in summer. Our results demonstrate that organic acids at the ground surface are largely associated with local traffic emissions, while long-range atmospheric transport followed by photochemical ageing contributes more in the urban boundary layer than the ground surface.
Jing Yang, Wanyu Zhao, Lianfang Wei, Qiang Zhang, Yue Zhao, Wei Hu, Libin Wu, Xiaodong Li, Chandra Mouli Pavuluri, Xiaole Pan, Yele Sun, Zifa Wang, Cong-Qiang Liu, Kimitaka Kawamura, and Pingqing Fu
Atmos. Chem. Phys., 20, 6841–6860, https://doi.org/10.5194/acp-20-6841-2020, https://doi.org/10.5194/acp-20-6841-2020, 2020
Short summary
Short summary
Our observations provide novel detailed information on the atmospheric abundances and spatial distributions of dicarboxylic acids, oxoacids, and α-dicarbonyls in marine aerosols collected from the South China Sea to the East Indian Ocean. Our results demonstrate that the continental outflow of both biogenic and anthropogenic precursors followed by photochemical aging is one of the main sources and formation processes of marine organic aerosols over the tropical oceanic regions.
Qiaorong Xie, Sihui Su, Shuang Chen, Yisheng Xu, Dong Cao, Jing Chen, Lujie Ren, Siyao Yue, Wanyu Zhao, Yele Sun, Zifa Wang, Haijie Tong, Hang Su, Yafang Cheng, Kimitaka Kawamura, Guibin Jiang, Cong-Qiang Liu, and Pingqing Fu
Atmos. Chem. Phys., 20, 6803–6820, https://doi.org/10.5194/acp-20-6803-2020, https://doi.org/10.5194/acp-20-6803-2020, 2020
Short summary
Short summary
Current knowledge on firework-related organic aerosols is very limited. Here the detailed molecular composition of organics in urban aerosols was characterized using ultrahigh-resolution FT-ICR mass spectrometry. Our findings highlight that firework emission leads to a sharp increase in CHO, CHNO, and CHOS containing high-molecular-weight species, particularly aromatic-like substances, which affect the physicochemical properties such as the light absorption and health effects of urban aerosols.
Yanhong Zhu, Andreas Tilgner, Erik Hans Hoffmann, Hartmut Herrmann, Kimitaka Kawamura, Lingxiao Yang, Likun Xue, and Wenxing Wang
Atmos. Chem. Phys., 20, 6725–6747, https://doi.org/10.5194/acp-20-6725-2020, https://doi.org/10.5194/acp-20-6725-2020, 2020
Short summary
Short summary
The formation and processing of secondary inorganic and organic compounds at Mt. Tai, the highest mountain on the North China Plain, are modeled using a multiphase chemical model. The concentrations of key radical and non-radical oxidations in the formation processes are investigated. Sensitivity tests assess the impacts of emission data and glyoxal partitioning constants on modeled results. The key precursors of secondary organic compounds are also identified.
Ambarish Pokhrel, Kimitaka Kawamura, Bhagawati Kunwar, Kaori Ono, Akane Tsushima, Osamu Seki, Sumio Matoba, and Takayuki Shiraiwa
Atmos. Chem. Phys., 20, 597–612, https://doi.org/10.5194/acp-20-597-2020, https://doi.org/10.5194/acp-20-597-2020, 2020
Short summary
Short summary
A 180 m long (ca. 274 year) ice core was drilled in the saddle of the Aurora Peak in Alaska (63.52° N, 146.54° W; elevation: 2,825 m). The ice core samples were derived with O-bis-(trimethylsilyl)trifluoroacetamide with 1 % trimethylsilyl chloride and pyridine followed by gas-chromatography–mass-spectrometry analyses. Levoglucosan, dehydroabietic acid and vanillic acid are reported for the first time from the alpine glacier to better understand historical biomass burning.
Yanbing Fan, Cong-Qiang Liu, Linjie Li, Lujie Ren, Hong Ren, Zhimin Zhang, Qinkai Li, Shuang Wang, Wei Hu, Junjun Deng, Libin Wu, Shujun Zhong, Yue Zhao, Chandra Mouli Pavuluri, Xiaodong Li, Xiaole Pan, Yele Sun, Zifa Wang, Kimitaka Kawamura, Zongbo Shi, and Pingqing Fu
Atmos. Chem. Phys., 20, 117–137, https://doi.org/10.5194/acp-20-117-2020, https://doi.org/10.5194/acp-20-117-2020, 2020
Short summary
Short summary
This study provides useful knowledge on the abundance, sources, and formation processes of organic aerosols in the coastal megacity of Tianjin, North China, based on the investigation of the molecular composition, diurnal variation, and winter/summer differences under the influence of land/sea breezes and the Asian summer monsoon.
Dhananjay Kumar Deshmukh, M. Mozammel Haque, Yongwon Kim, and Kimitaka Kawamura
Atmos. Chem. Phys., 19, 14009–14029, https://doi.org/10.5194/acp-19-14009-2019, https://doi.org/10.5194/acp-19-14009-2019, 2019
Short summary
Short summary
Organic tracers are useful to understand the sources and formation mechanisms of organic aerosols. We determined organic tracers in PM2.5 samples collected during the summer season of 2009 using a gas chromatograph–mass spectrometer. A notable feature in the Alaskan aerosol is the high levels of anhydrosugars and n-alkanoic acids. Our results demonstrate that forest fires and plant emissions are the crucial factors controlling the organic aerosol burden in the atmosphere of central Alaska.
Md. Mozammel Haque, Kimitaka Kawamura, Dhananjay K. Deshmukh, Cao Fang, Wenhuai Song, Bao Mengying, and Yan-Lin Zhang
Atmos. Chem. Phys., 19, 5147–5164, https://doi.org/10.5194/acp-19-5147-2019, https://doi.org/10.5194/acp-19-5147-2019, 2019
Petr Vodička, Kimitaka Kawamura, Jaroslav Schwarz, Bhagawati Kunwar, and Vladimír Ždímal
Atmos. Chem. Phys., 19, 3463–3479, https://doi.org/10.5194/acp-19-3463-2019, https://doi.org/10.5194/acp-19-3463-2019, 2019
Short summary
Short summary
Measurements of stable carbon and nitrogen isotopic compositions in the PM1 atmospheric aerosol provide partial insight into the possible sources of aerosol at a Central European rural background station but mainly offers a deeper insight into the physical and chemical processes taking place between the gas phase and particulate matter. These processes are probably valid in general (not only at this site), especially for nitrogen compounds.
Xin Wan, Shichang Kang, Maheswar Rupakheti, Qianggong Zhang, Lekhendra Tripathee, Junming Guo, Pengfei Chen, Dipesh Rupakheti, Arnico K. Panday, Mark G. Lawrence, Kimitaka Kawamura, and Zhiyuan Cong
Atmos. Chem. Phys., 19, 2725–2747, https://doi.org/10.5194/acp-19-2725-2019, https://doi.org/10.5194/acp-19-2725-2019, 2019
Short summary
Short summary
The sources of primary and secondary aerosols in the Hindu Kush–Himalayan–Tibetan Plateau region are not well known. Organic molecular tracers are useful for aerosol source apportionment. The characterization of molecular tracers were first systemically investigated and the contribution from primary and secondary sources to carbonaceous aerosols was estimated in the Kathmandu Valley. Our results demonstrate that biomass burning contributed a significant fraction to OC in the Kathmandu Valley.
Tomoki Mochizuki, Kimitaka Kawamura, Yuzo Miyazaki, Bhagawati Kunwar, and Suresh Kumar Reddy Boreddy
Atmos. Chem. Phys., 19, 2421–2432, https://doi.org/10.5194/acp-19-2421-2019, https://doi.org/10.5194/acp-19-2421-2019, 2019
Short summary
Short summary
Monocarboxylic acids (MCAs) in gases and particles were measured in deciduous forest. Formic acid in the gas phase and isopentanoic acid in the particle phase were dominant MCAs. Gaseous normal monoacids showed positive correlations with isobutyric acid. Particulate isopentanoic acid showed a positive correlation with lactic acid. The florest floor with soil microbes contributes to emission of MCAs. Our results may be useful to improve understanding of organic aerosol formation in the forest.
Mingjie Kang, Pingqing Fu, Kimitaka Kawamura, Fan Yang, Hongliang Zhang, Zhengchen Zang, Hong Ren, Lujie Ren, Ye Zhao, Yele Sun, and Zifa Wang
Atmos. Chem. Phys., 18, 13947–13967, https://doi.org/10.5194/acp-18-13947-2018, https://doi.org/10.5194/acp-18-13947-2018, 2018
Short summary
Short summary
Molecular characterization and spatial distribution of biogenic primary organic aerosol (POA) and secondary organic aerosol (SOA) in the marine atmosphere are not well known. Here, we analysed the organic molecular composition of marine aerosols collected during a marine cruise in the East China Sea during May–June 2014. Our results suggest that the Asian continent can be a natural emitter of biogenic POA and SOA, which can be transported to the downwind marine atmosphere.
Yanhong Zhu, Lingxiao Yang, Jianmin Chen, Kimitaka Kawamura, Mamiko Sato, Andreas Tilgner, Dominik van Pinxteren, Ying Chen, Likun Xue, Xinfeng Wang, Isobel J. Simpson, Hartmut Herrmann, Donald R. Blake, and Wenxing Wang
Atmos. Chem. Phys., 18, 10741–10758, https://doi.org/10.5194/acp-18-10741-2018, https://doi.org/10.5194/acp-18-10741-2018, 2018
Short summary
Short summary
Molecular distributions of dicarboxylic acids, oxocarboxylic acids and α-dicarbonyls in the free troposphere are identified, and their concentration variations between 2014 and 2006 are presented. High nighttime concentrations were probably due to precursor emissions and aqueous-phase oxidation. Biomass burning was significant, but its tracer levoglucosan in 2014 was 5 times lower than 2006 concentrations. Finally, regional emission from anthropogenic activities was identified as a major source.
Wanyu Zhao, Kimitaka Kawamura, Siyao Yue, Lianfang Wei, Hong Ren, Yu Yan, Mingjie Kang, Linjie Li, Lujie Ren, Senchao Lai, Jie Li, Yele Sun, Zifa Wang, and Pingqing Fu
Atmos. Chem. Phys., 18, 2749–2767, https://doi.org/10.5194/acp-18-2749-2018, https://doi.org/10.5194/acp-18-2749-2018, 2018
Short summary
Short summary
In this paper, we investigate the seasonal trends in concentrations and compound-specific stable carbon isotope ratios of low molecular weight dicarboxylic acids (C2–C12) and related compounds in fine aerosols (PM2.5) in Beijing. Our study demonstrates that, in addition to the production via photo-oxidation, high abundances of diacids and related compounds in Beijing are largely associated with anthropogenic primary emissions such as biomass burning, fossil fuel combustion and plastic burning.
Suresh K. R. Boreddy, M. Mozammel Haque, and Kimitaka Kawamura
Atmos. Chem. Phys., 18, 1291–1306, https://doi.org/10.5194/acp-18-1291-2018, https://doi.org/10.5194/acp-18-1291-2018, 2018
Short summary
Short summary
To better understand the impact of long-range atmospheric transport of East Asian pollutants over the western North Pacific, we conducted a long-term (2001–12) study on carbonaceous aerosols over the WNP, which demonstrates that the photochemical formation of WSOC and its contributions to SOA have increased over the western North Pacific via long-range atmospheric transport. Biomass-burning-derived carbonaceous aerosols have increased, while primary fossil-fuel-derived aerosols have decreased.
Santosh Kumar Verma, Kimitaka Kawamura, Jing Chen, and Pingqing Fu
Atmos. Chem. Phys., 18, 81–101, https://doi.org/10.5194/acp-18-81-2018, https://doi.org/10.5194/acp-18-81-2018, 2018
Short summary
Short summary
East Asia has experienced rapid economic development in the last several decades, of which activities emit bioaerosols. The atmospheric particles are transported to downwind regions in the Pacific. To understand the atmospheric transport of bioaerosols, we conducted long-term observations of sugar components over Chichijima Island from 2001 to 2013. We found that atmospheric circulations significantly affect the seasonal variation of bioaerosol distributions over the western North Pacific.
Xin Wan, Shichang Kang, Quanlian Li, Dipesh Rupakheti, Qianggong Zhang, Junming Guo, Pengfei Chen, Lekhendra Tripathee, Maheswar Rupakheti, Arnico K. Panday, Wu Wang, Kimitaka Kawamura, Shaopeng Gao, Guangming Wu, and Zhiyuan Cong
Atmos. Chem. Phys., 17, 8867–8885, https://doi.org/10.5194/acp-17-8867-2017, https://doi.org/10.5194/acp-17-8867-2017, 2017
Short summary
Short summary
Biomass burning (BB) tracers in the aerosols in Lumbini, northern IGP, were studied for the first time. The levoglucosan was the predominant tracer and BB significantly contributed to the air quality in Lumbini. Mixed crop residues and hardwood were main burning materials. BB emissions constituted large fraction of OC, especially during the post-monsoon season. The sources of BB aerosols in Lumbini varies seasonally due to the influence of local emissions and long-range transport.
Tomoki Mochizuki, Kimitaka Kawamura, Kazuma Aoki, and Nobuo Sugimoto
Atmos. Chem. Phys., 16, 14621–14633, https://doi.org/10.5194/acp-16-14621-2016, https://doi.org/10.5194/acp-16-14621-2016, 2016
Short summary
Short summary
High abundances of formic and acetic acids in the snow pit samples (6 m in depth) collected at a snowfield site near Mt. Tateyama, central Japan. Formic and acetic acids are highly abundant in the snow, with dust layers in which Ca was enriched. We propose that alkaline metals in Asian dusts largely titrate gaseous organic acids during long-range atmospheric transport.
Yuzo Miyazaki, Sean Coburn, Kaori Ono, David T. Ho, R. Bradley Pierce, Kimitaka Kawamura, and Rainer Volkamer
Atmos. Chem. Phys., 16, 7695–7707, https://doi.org/10.5194/acp-16-7695-2016, https://doi.org/10.5194/acp-16-7695-2016, 2016
Short summary
Short summary
We conducted a WSOC-specific 13C analysis of submicron marine aerosols over the eastern equatorial Pacific for the first time. The analysis of 13C combined with monosaccharides provides evidence of a significant contribution of marine dissolved organic carbon (DOC) to submicron particles in the MBL regardless of the oceanic area. The study demonstrates that DOC is closely correlated with the submicron WSOC and implies that it may characterize background OA in the MBL over the study region.
Chunmao Zhu, Kimitaka Kawamura, Yasuro Fukuda, Michihiro Mochida, and Yoko Iwamoto
Atmos. Chem. Phys., 16, 7497–7506, https://doi.org/10.5194/acp-16-7497-2016, https://doi.org/10.5194/acp-16-7497-2016, 2016
Short summary
Short summary
We collected aerosol samples in a midlatitude forest in Wakayama, Japan and analyzed the organic tracers of various sources. We found that compounds originating from fungal spores contributed significantly to total organic aerosol mass. On the other hand, those from oxidation of biogenic volatile organic compounds, although they could not be ignored, had relatively smaller mass fractions.
Yan-Lin Zhang, Kimitaka Kawamura, Ping Qing Fu, Suresh K. R. Boreddy, Tomomi Watanabe, Shiro Hatakeyama, Akinori Takami, and Wei Wang
Atmos. Chem. Phys., 16, 6407–6419, https://doi.org/10.5194/acp-16-6407-2016, https://doi.org/10.5194/acp-16-6407-2016, 2016
Short summary
Short summary
Here, based on three aircraft measurements over East Asia, we demonstrate an aqueous-phase mechanism for enhanced SOA production in the troposphere following correlation analysis of oxalic acid in tropospheric aerosols with other measured chemical variables including its precursors and its intermediate as well as biogenic-derived SOA from isoprene, monoterpenes and β-caryophyllene.
Dhananjay K. Deshmukh, Kimitaka Kawamura, Manuel Lazaar, Bhagawati Kunwar, and Suresh K. R. Boreddy
Atmos. Chem. Phys., 16, 5263–5282, https://doi.org/10.5194/acp-16-5263-2016, https://doi.org/10.5194/acp-16-5263-2016, 2016
Short summary
Short summary
Size-segregated aerosols in nine size bins were collected in spring 2008 at Cape Hedo, Okinawa, in the western North Pacific Rim, and measured for diacids and related polar compounds. Oxalic acid, glyoxylic acid, and glyoxal peaked at 0.65–1.1 µm in fine mode, suggesting their secondary formation possibly in aerosol aqueous phase. Their strong correlations with liquid water content in fine mode further suggest an importance of the aqueous-phase production in Okinawa aerosols.
S. Kundu, K. Kawamura, M. Kobayashi, E. Tachibana, M. Lee, P. Q. Fu, and J. Jung
Atmos. Chem. Phys., 16, 585–596, https://doi.org/10.5194/acp-16-585-2016, https://doi.org/10.5194/acp-16-585-2016, 2016
Short summary
Short summary
Chemistry-transport models have predicted a change in secondary organic aerosols (SOA) in the future atmosphere with a large uncertainty. This study measures diacids, major water-soluble surrogates of SOA, on a sub-decadal scale in atmospheric aerosols in eastern Asia. Diacids are observed to increase by 3.9–47.4 % per year. The increases in the water-soluble organic acid fraction could modify the aerosol organic composition and its sensitivity to climate-relevant physical properties.
T. Mochizuki, Y. Miyazaki, K. Ono, R. Wada, Y. Takahashi, N. Saigusa, K. Kawamura, and A. Tani
Atmos. Chem. Phys., 15, 12029–12041, https://doi.org/10.5194/acp-15-12029-2015, https://doi.org/10.5194/acp-15-12029-2015, 2015
Short summary
Short summary
Simultaneous measurements of concentrations and above-canopy fluxes of isoprene and α-pinene in a forest, along with their oxidation products in aerosols, suggest that the inflow of anthropogenic precursors/aerosols enhanced the formation of both isoprene- and α-pinene-derived secondary organic aerosol (SOA) within the forest canopy even when the flux was low. We also emphasize the role of vegetation/soils near the forest floor as important sources of isoprene and α-pinene in the forest.
C. M. Pavuluri, K. Kawamura, and P. Q. Fu
Atmos. Chem. Phys., 15, 9883–9896, https://doi.org/10.5194/acp-15-9883-2015, https://doi.org/10.5194/acp-15-9883-2015, 2015
C. M. Pavuluri, K. Kawamura, N. Mihalopoulos, and T. Swaminathan
Atmos. Chem. Phys., 15, 7999–8012, https://doi.org/10.5194/acp-15-7999-2015, https://doi.org/10.5194/acp-15-7999-2015, 2015
S. K. R. Boreddy and K. Kawamura
Atmos. Chem. Phys., 15, 6437–6453, https://doi.org/10.5194/acp-15-6437-2015, https://doi.org/10.5194/acp-15-6437-2015, 2015
K. F. Ho, R.-J. Huang, K. Kawamura, E. Tachibana, S. C. Lee, S. S. H. Ho, T. Zhu, and L. Tian
Atmos. Chem. Phys., 15, 3111–3123, https://doi.org/10.5194/acp-15-3111-2015, https://doi.org/10.5194/acp-15-3111-2015, 2015
Short summary
Short summary
The objective of this study is to identify the influence of traffic emissions and regional transport to the atmosphere in Beijing during the CAREBeijing-2007 in summer. This study demonstrates that even when primary exhaust was controlled by traffic restrictions, the contribution of secondary organic species formed from photochemical processes was critical with long-range atmospheric transport of pollutants.
C. Zhu, K. Kawamura, and B. Kunwar
Atmos. Chem. Phys., 15, 1959–1973, https://doi.org/10.5194/acp-15-1959-2015, https://doi.org/10.5194/acp-15-1959-2015, 2015
Short summary
Short summary
Using levoglucosan as a biomass burning tracer, influence of biomass burning on the air quality of Okinawa Island in the western North Pacific Rim was evaluated. High levels of levoglucosan were found in the atmospheric aerosols during winter probably due to the open burning and domestic heating and cooking in north/northeast China, Mongolia and Russia, together with enhanced continental outflow.
Z. Cong, S. Kang, K. Kawamura, B. Liu, X. Wan, Z. Wang, S. Gao, and P. Fu
Atmos. Chem. Phys., 15, 1573–1584, https://doi.org/10.5194/acp-15-1573-2015, https://doi.org/10.5194/acp-15-1573-2015, 2015
Y. Miyazaki, M. Sawano, and K. Kawamura
Biogeosciences, 11, 4407–4414, https://doi.org/10.5194/bg-11-4407-2014, https://doi.org/10.5194/bg-11-4407-2014, 2014
J. Jung and K. Kawamura
Atmos. Chem. Phys., 14, 7519–7531, https://doi.org/10.5194/acp-14-7519-2014, https://doi.org/10.5194/acp-14-7519-2014, 2014
P. Q. Fu, K. Kawamura, Y. F. Cheng, S. Hatakeyama, A. Takami, H. Li, and W. Wang
Atmos. Chem. Phys., 14, 4185–4199, https://doi.org/10.5194/acp-14-4185-2014, https://doi.org/10.5194/acp-14-4185-2014, 2014
B. Kunwar and K. Kawamura
Atmos. Chem. Phys., 14, 1819–1836, https://doi.org/10.5194/acp-14-1819-2014, https://doi.org/10.5194/acp-14-1819-2014, 2014
S. L. Mkoma, K. Kawamura, and P. Q. Fu
Atmos. Chem. Phys., 13, 10325–10338, https://doi.org/10.5194/acp-13-10325-2013, https://doi.org/10.5194/acp-13-10325-2013, 2013
Y. Kanaya, H. Akimoto, Z.-F. Wang, P. Pochanart, K. Kawamura, Y. Liu, J. Li, Y. Komazaki, H. Irie, X.-L. Pan, F. Taketani, K. Yamaji, H. Tanimoto, S. Inomata, S. Kato, J. Suthawaree, K. Okuzawa, G. Wang, S. G. Aggarwal, P. Q. Fu, T. Wang, J. Gao, Y. Wang, and G. Zhuang
Atmos. Chem. Phys., 13, 8265–8283, https://doi.org/10.5194/acp-13-8265-2013, https://doi.org/10.5194/acp-13-8265-2013, 2013
K. Kawamura, E. Tachibana, K. Okuzawa, S. G. Aggarwal, Y. Kanaya, and Z. F. Wang
Atmos. Chem. Phys., 13, 8285–8302, https://doi.org/10.5194/acp-13-8285-2013, https://doi.org/10.5194/acp-13-8285-2013, 2013
N. He, K. Kawamura, K. Okuzawa, Y. Kanaya, and Z. F. Wang
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acpd-13-16699-2013, https://doi.org/10.5194/acpd-13-16699-2013, 2013
Revised manuscript not accepted
K. Kawamura, K. Okuzawa, S. G. Aggarwal, H. Irie, Y. Kanaya, and Z. Wang
Atmos. Chem. Phys., 13, 5369–5380, https://doi.org/10.5194/acp-13-5369-2013, https://doi.org/10.5194/acp-13-5369-2013, 2013
C. M. Pavuluri, K. Kawamura, N. Mihalopoulos, and P. Fu
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acpd-13-6589-2013, https://doi.org/10.5194/acpd-13-6589-2013, 2013
Revised manuscript not accepted
S. L. Mkoma and K. Kawamura
Atmos. Chem. Phys., 13, 2235–2251, https://doi.org/10.5194/acp-13-2235-2013, https://doi.org/10.5194/acp-13-2235-2013, 2013
P. Q. Fu, K. Kawamura, J. Chen, B. Charrière, and R. Sempéré
Biogeosciences, 10, 653–667, https://doi.org/10.5194/bg-10-653-2013, https://doi.org/10.5194/bg-10-653-2013, 2013
Related subject area
Biogeochemistry: Environmental Microbiology
Effects of surface water interactions with karst groundwater on microbial biomass, metabolism, and production
Overview: Global change effects on terrestrial biogeochemistry at the plant–soil interface
Changes in diazotrophic community structure associated with Kuroshio succession in the northern South China Sea
Technical note: A comparison of methods for estimating coccolith mass
Fractionation of stable carbon isotopes during formate consumption in anoxic rice paddy soils and lake sediments
Characteristics of bacterial and fungal communities and their associations with sugar compounds in atmospheric aerosols at a rural site in northern China
Responses of globally important phytoplankton species to olivine dissolution products and implications for carbon dioxide removal via ocean alkalinity enhancement
Differentiation of cognate bacterial communities in thermokarst landscapes: implications for ecological consequences of permafrost degradation
A multi-phase biogeochemical model for mitigating earthquake-induced liquefaction via microbially induced desaturation and calcium carbonate precipitation
Phosphorus regulates ectomycorrhizal fungi biomass production in a Norway spruce forest
Reallocation of elemental content and macromolecules in the coccolithophore Emiliania huxleyi to acclimate to climate change
Abrasion of sedimentary rocks as a source of hydrogen peroxide and nutrients to subglacial ecosystems
Nitrous oxide (N2O) synthesis by the freshwater cyanobacterium Microcystis aeruginosa
Interdisciplinary strategy to assess the impact of meteorological variables on the biochemical composition of the rain and the dynamics of a small eutrophic lake under rain forcing
Depth-related patterns in microbial community responses to complex organic matter in the western North Atlantic Ocean
Assessing the influence of ocean alkalinity enhancement on a coastal phytoplankton community
Eddy-enhanced primary production sustains heterotrophic microbial activities in the Eastern Tropical North Atlantic
Composition and niche-specific characteristics of microbial consortia colonizing Marsberg copper mine in the Rhenish Massif
Diversity and assembly processes of microbial eukaryotic communities in Fildes Peninsula Lakes (West Antarctica)
Nitrophobic ectomycorrhizal fungi are associated with enhanced hydrophobicity of soil organic matter in a Norway spruce forest
Physiological control on carbon isotope fractionation in marine phytoplankton
Implementation of mycorrhizal mechanisms into soil carbon model improves the prediction of long-term processes of plant litter decomposition
Impact of dust addition on the microbial food web under present and future conditions of pH and temperature
Fractionation of stable carbon isotopes during acetate consumption by methanogenic and sulfidogenic microbial communities in rice paddy soils and lake sediments
Hydrothermal trace metal release and microbial metabolism in the northeastern Lau Basin of the South Pacific Ocean
Sedimentation rate and organic matter dynamics shape microbiomes across a continental margin
Disturbance triggers non-linear microbe–environment feedbacks
Hydrographic fronts shape productivity, nitrogen fixation, and microbial community composition in the southern Indian Ocean and the Southern Ocean
Microbial and geo-archaeological records reveal the growth rate, origin and composition of desert rock surface communities
Metagenomic insights into the metabolism of microbial communities that mediate iron and methane cycling in Lake Kinneret iron-rich methanic sediments
Spatiotemporal patterns of N2 fixation in coastal waters derived from rate measurements and remote sensing
Biotic and abiotic transformation of amino acids in cloud water: experimental studies and atmospheric implications
Potential bioavailability of organic matter from atmospheric particles to marine heterotrophic bacteria
Microbial functional signature in the atmospheric boundary layer
New insight to niche partitioning and ecological function of ammonia oxidizing archaea in subtropical estuarine ecosystem
Impact of reactive surfaces on the abiotic reaction between nitrite and ferrous iron and associated nitrogen and oxygen isotope dynamics
Reviews and syntheses: Bacterial bioluminescence – ecology and impact in the biological carbon pump
Salinity-dependent algae uptake and subsequent carbon and nitrogen metabolisms of two intertidal foraminifera (Ammonia tepida and Haynesina germanica)
On giant shoulders: how a seamount affects the microbial community composition of seawater and sponges
Spatial variations in sedimentary N-transformation rates in the North Sea (German Bight)
Patterns of (trace) metals and microorganisms in the Rainbow hydrothermal vent plume at the Mid-Atlantic Ridge
Co-occurrence of Fe and P stress in natural populations of the marine diazotroph Trichodesmium
Senescence as the main driver of iodide release from a diverse range of marine phytoplankton
Reviews and syntheses: Biological weathering and its consequences at different spatial levels – from nanoscale to global scale
Deep-sea sponge grounds as nutrient sinks: denitrification is common in boreo-Arctic sponges
Inducing the attachment of cable bacteria on oxidizing electrodes
Bacterial degradation activity in the eastern tropical South Pacific oxygen minimum zone
Macromolecular fungal ice nuclei in Fusarium: effects of physical and chemical processing
Effects of sea animal colonization on the coupling between dynamics and activity of soil ammonia-oxidizing bacteria and archaea in maritime Antarctica
Comprehensive characterization of an aspen (Populus tremuloides) leaf litter sample that maintained ice nucleation activity for 48 years
Adrian Barry-Sosa, Madison K. Flint, Justin C. Ellena, Jonathan B. Martin, and Brent C. Christner
Biogeosciences, 21, 3965–3984, https://doi.org/10.5194/bg-21-3965-2024, https://doi.org/10.5194/bg-21-3965-2024, 2024
Short summary
Short summary
This study examined springs in north central Florida focusing on how interactions between the surface and subsurface affected the properties of groundwater microbes. We found that microbes reproduced at rates that greatly exceed those documented for any other aquifer. Although the groundwater discharged to spring runs contains low concentrations of nutrients, our results indicate that microbes have access to sources of energy and produce new cells at rates similar to surface waterbodies.
Lucia Fuchslueger, Emily Francesca Solly, Alberto Canarini, and Albert Carles Brangarí
Biogeosciences, 21, 3959–3964, https://doi.org/10.5194/bg-21-3959-2024, https://doi.org/10.5194/bg-21-3959-2024, 2024
Short summary
Short summary
This overview of the special issue “Global change effects on terrestrial biogeochemistry at the plant–soil interface” features empirical, conceptual and modelling-based studies and outlines key findings on plant responses to elevated CO2; soil organism responses to warming; impacts on soil organic carbon, nitrogen and mineral nutrient cycling; and water level changes affecting greenhouse gas emissions, from the Arctic to the tropics, which are crucial for deciphering feedbacks to global change.
Han Zhang, Guangming Mai, Weicheng Luo, Meng Chen, Ran Duan, and Tuo Shi
Biogeosciences, 21, 2529–2546, https://doi.org/10.5194/bg-21-2529-2024, https://doi.org/10.5194/bg-21-2529-2024, 2024
Short summary
Short summary
We report taxon-specific biogeography of N2-fixing microbes (diazotrophs) driven by Kuroshio intrusion (Kl) into the South China Sea. We show that the composition and distribution of distinct diazotrophic taxa shift with Kl-induced variations in physicochemical parameters of seawater and that Kl shapes diazotrophic community primarily as a stochastic process. This study thus has implications for the distribution of diazotrophs in a future warming ocean, as Kls are projected to intensify.
Celina Rebeca Valença, Luc Beaufort, Gustaaf Marinus Hallegraeff, and Marius Nils Müller
Biogeosciences, 21, 1601–1611, https://doi.org/10.5194/bg-21-1601-2024, https://doi.org/10.5194/bg-21-1601-2024, 2024
Short summary
Short summary
Coccolithophores contribute to the global carbon cycle and their calcite structures (coccoliths) are used as a palaeoproxy to understand past oceanographic conditions. Here, we compared three frequently used methods to estimate coccolith mass from the model species Emiliania huxleyi and the results allow for a high level of comparability between the methods, facilitating future comparisons and consolidation of mass changes observed from ecophysiological and biogeochemical studies.
Ralf Conrad and Peter Claus
Biogeosciences, 21, 1161–1172, https://doi.org/10.5194/bg-21-1161-2024, https://doi.org/10.5194/bg-21-1161-2024, 2024
Short summary
Short summary
Knowledge of carbon isotope fractionation is important for the assessment of the pathways involved in the degradation of organic matter. Formate is an important intermediate during this process. It was mainly converted to carbon dioxide and acetate both in the presence and absence of sulfate. Methane was only a minor product and was mainly formed from the acetate. The acetate was depleted in the heavy carbon atom relative to formate, while the carbon dioxide was enriched.
Mutong Niu, Shu Huang, Wei Hu, Yajie Wang, Wanyun Xu, Wan Wei, Qiang Zhang, Zihan Wang, Donghuan Zhang, Rui Jin, Libin Wu, Junjun Deng, Fangxia Shen, and Pingqing Fu
Biogeosciences, 20, 4915–4930, https://doi.org/10.5194/bg-20-4915-2023, https://doi.org/10.5194/bg-20-4915-2023, 2023
Short summary
Short summary
Sugar compounds in air can trace the source of bioaerosols that affect public health and climate. In rural north China, we observed increased fungal activity at night and less variable bacterial community diversity. Certain night-increasing sugar compounds were more closely related to fungi than bacteria. The fungal community greatly influenced sugar compounds, while bacteria played a limited role. Caution is advised when using sugar compounds to trace airborne microbes, particularly bacteria.
David A. Hutchins, Fei-Xue Fu, Shun-Chung Yang, Seth G. John, Stephen J. Romaniello, M. Grace Andrews, and Nathan G. Walworth
Biogeosciences, 20, 4669–4682, https://doi.org/10.5194/bg-20-4669-2023, https://doi.org/10.5194/bg-20-4669-2023, 2023
Short summary
Short summary
Applications of the mineral olivine are a promising means to capture carbon dioxide via coastal enhanced weathering, but little is known about the impacts on important marine phytoplankton. We examined the effects of olivine dissolution products on species from three major phytoplankton groups: diatoms, coccolithophores, and cyanobacteria. Growth and productivity were generally either unaffected or stimulated, suggesting the effects of olivine on key phytoplankton are negligible or positive.
Ze Ren, Shudan Ye, Hongxuan Li, Xilei Huang, and Luyao Chen
Biogeosciences, 20, 4241–4258, https://doi.org/10.5194/bg-20-4241-2023, https://doi.org/10.5194/bg-20-4241-2023, 2023
Short summary
Short summary
Permafrost thaw initiates thermokarst landscape formation, resulting in distinct new habitats, including degraded permafrost soil, thermokarst lake sediments, and lake water. These distinct habitats harbored differentiated bacterial communities that originated from the same source, differing in diversity, assembly mechanisms, and environmental influences. The results imply ecological consequences of permafrost degradation in the face of further climate change.
Caitlyn A. Hall, Andre van Turnhout, Edward Kavazanjian Jr., Leon A. van Paassen, and Bruce Rittmann
Biogeosciences, 20, 2903–2917, https://doi.org/10.5194/bg-20-2903-2023, https://doi.org/10.5194/bg-20-2903-2023, 2023
Short summary
Short summary
Earthquake-induced soil liquefaction poses a significant global threat. Microbially induced desaturation and precipitation (MIDP) via denitrification is a potentially sustainable, non-disruptive bacteria-driven ground improvement technique under existing structures. We developed a next-generation biogeochemical model to understand and predict the behavior of MIDP in the natural environment to design field-based hazard mitigation treatments.
Juan Pablo Almeida, Lorenzo Menichetti, Alf Ekblad, Nicholas P. Rosenstock, and Håkan Wallander
Biogeosciences, 20, 1443–1458, https://doi.org/10.5194/bg-20-1443-2023, https://doi.org/10.5194/bg-20-1443-2023, 2023
Short summary
Short summary
In forests, trees allocate a significant amount of carbon belowground to support mycorrhizal symbiosis. In northern forests nitrogen normally regulates this allocation and consequently mycorrhizal fungi growth. In this study we demonstrate that in a conifer forest from Sweden, fungal growth is regulated by phosphorus instead of nitrogen. This is probably due to an increase in nitrogen deposition to soils caused by decades of human pollution that has altered the ecosystem nutrient regime.
Yong Zhang, Yong Zhang, Shuai Ma, Hanbing Chen, Jiabing Li, Zhengke Li, Kui Xu, Ruiping Huang, Hong Zhang, Yonghe Han, and Jun Sun
Biogeosciences, 20, 1299–1312, https://doi.org/10.5194/bg-20-1299-2023, https://doi.org/10.5194/bg-20-1299-2023, 2023
Short summary
Short summary
We found that increasing light intensity compensates for the negative effects of low phosphorus (P) availability on cellular protein and nitrogen contents. Reduced P availability, increasing light intensity, and ocean acidification act synergistically to increase cellular contents of carbohydrate and POC and the allocation of POC to carbohydrate. These regulation mechanisms in Emiliania huxleyi could provide vital information for evaluating carbon cycle in marine ecosystems under global change.
Beatriz Gill-Olivas, Jon Telling, Mark Skidmore, and Martyn Tranter
Biogeosciences, 20, 929–943, https://doi.org/10.5194/bg-20-929-2023, https://doi.org/10.5194/bg-20-929-2023, 2023
Short summary
Short summary
Microbial ecosystems have been found in all subglacial environments sampled to date. Yet, little is known of the sources of energy and nutrients that sustain these microbial populations. This study shows that crushing of sedimentary rocks, which contain organic carbon, carbonate and sulfide minerals, along with previously weathered silicate minerals, produces a range of compounds and nutrients which can be utilised by the diverse suite of microbes that inhabit glacier beds.
Federico Fabisik, Benoit Guieysse, Jonathan Procter, and Maxence Plouviez
Biogeosciences, 20, 687–693, https://doi.org/10.5194/bg-20-687-2023, https://doi.org/10.5194/bg-20-687-2023, 2023
Short summary
Short summary
We show, for the first time, that pure cultures of the cyanobacterium Microcystis aeruginosa can synthesize the potent greenhouse gas N2O using nitrite as substrate. Our findings have broad environmental implications because M. aeruginosa is globally found in freshwater ecosystems and is often the dominant species found in algae blooms. Further research is now needed to determine the occurrence and significance of N2O emissions from ecosystems rich with M. aeruginosa.
Fanny Noirmain, Jean-Luc Baray, Frédéric Tridon, Philippe Cacault, Hermine Billard, Guillaume Voyard, Joël Van Baelen, and Delphine Latour
Biogeosciences, 19, 5729–5749, https://doi.org/10.5194/bg-19-5729-2022, https://doi.org/10.5194/bg-19-5729-2022, 2022
Short summary
Short summary
We present a study linking rain, meteorology, and mountain lake phytoplankton dynamics on the basis of a case study at Aydat (France) in September 2020. The air mass origin mainly influences the rain chemical composition, which depends on the type of rain, convective or stratiform. Our results also highlighted a non-negligible presence of photosynthetic cells in rainwater. The impact of the atmospheric forcing on the lake could play a key role in phytoplankton dynamics in the temperate zone.
Sarah A. Brown, John Paul Balmonte, Adrienne Hoarfrost, Sherif Ghobrial, and Carol Arnosti
Biogeosciences, 19, 5617–5631, https://doi.org/10.5194/bg-19-5617-2022, https://doi.org/10.5194/bg-19-5617-2022, 2022
Short summary
Short summary
Bacteria use extracellular enzymes to cut large organic matter to sizes small enough for uptake. We compared the enzymatic response of surface, mid-water, and deep-ocean bacteria to complex natural substrates. Bacteria in surface and mid-depth waters produced a much wider range of enzymes than those in the deep ocean and may therefore consume a broader range of organic matter. The extent to which organic matter is recycled by bacteria depends in part on its residence time at different depths.
Aaron Ferderer, Zanna Chase, Fraser Kennedy, Kai G. Schulz, and Lennart T. Bach
Biogeosciences, 19, 5375–5399, https://doi.org/10.5194/bg-19-5375-2022, https://doi.org/10.5194/bg-19-5375-2022, 2022
Short summary
Short summary
Ocean alkalinity enhancement has the capacity to remove vast quantities of carbon from the atmosphere, but its effect on marine ecosystems is largely unknown. We assessed the effect of increased alkalinity on a coastal phytoplankton community when seawater was equilibrated and not equilibrated with atmospheric CO2. We found that the phytoplankton community was moderately affected by increased alkalinity and equilibration with atmospheric CO2 had little influence on this effect.
Quentin Devresse, Kevin W. Becker, Arne Bendinger, Johannes Hahn, and Anja Engel
Biogeosciences, 19, 5199–5219, https://doi.org/10.5194/bg-19-5199-2022, https://doi.org/10.5194/bg-19-5199-2022, 2022
Short summary
Short summary
Eddies are ubiquitous in the ocean and alter physical, chemical, and biological processes. However, how they affect organic carbon production and consumption is largely unknown. Here we show how an eddy triggers a cascade effect on biomass production and metabolic activities of phyto- and bacterioplankton. Our results may contribute to the improvement of biogeochemical models used to estimate carbon fluxes in the ocean.
Sania Arif, Heiko Nacke, Elias Schliekmann, Andreas Reimer, Gernot Arp, and Michael Hoppert
Biogeosciences, 19, 4883–4902, https://doi.org/10.5194/bg-19-4883-2022, https://doi.org/10.5194/bg-19-4883-2022, 2022
Short summary
Short summary
The natural enrichment of Chloroflexi (Ktedonobacteria) at the Kilianstollen Marsberg copper mine rocks being exposed to the acidic sulfate-rich leachate led to an investigation of eight metagenomically assembled genomes (MAGs) involved in copper and other transition heavy metal resistance in addition to low pH resistance and aromatic compounds degradation. The present study offers functional insights about a novel cold-adapted Ktedonobacteria MAG extremophily along with other phyla MAGs.
Chunmei Zhang, Huirong Li, Yinxin Zeng, Haitao Ding, Bin Wang, Yangjie Li, Zhongqiang Ji, Yonghong Bi, and Wei Luo
Biogeosciences, 19, 4639–4654, https://doi.org/10.5194/bg-19-4639-2022, https://doi.org/10.5194/bg-19-4639-2022, 2022
Short summary
Short summary
The unique microbial eukaryotic community structure and lower diversity have been demonstrated in five freshwater lakes of the Fildes Peninsula, Antarctica. Stochastic processes and biotic co-occurrence patterns were shown to be important in shaping microbial eukaryotic communities in the area. Our study provides a better understanding of the dynamic patterns and ecological assembly processes of microbial eukaryotic communities in Antarctic oligotrophic lakes (Fildes Peninsula).
Juan Pablo Almeida, Nicholas P. Rosenstock, Susanne K. Woche, Georg Guggenberger, and Håkan Wallander
Biogeosciences, 19, 3713–3726, https://doi.org/10.5194/bg-19-3713-2022, https://doi.org/10.5194/bg-19-3713-2022, 2022
Short summary
Short summary
Fungi living in symbiosis with tree roots can accumulate belowground, forming special tissues than can repel water. We measured the water repellency of organic material incubated belowground and correlated it with fungal growth. We found a positive association between water repellency and root symbiotic fungi. These results are important because an increase in soil water repellency can reduce the release of CO2 from soils into the atmosphere and mitigate the effects of greenhouse gasses.
Karen M. Brandenburg, Björn Rost, Dedmer B. Van de Waal, Mirja Hoins, and Appy Sluijs
Biogeosciences, 19, 3305–3315, https://doi.org/10.5194/bg-19-3305-2022, https://doi.org/10.5194/bg-19-3305-2022, 2022
Short summary
Short summary
Reconstructions of past CO2 concentrations rely on proxy estimates, with one line of proxies relying on the CO2-dependence of stable carbon isotope fractionation in marine phytoplankton. Culturing experiments provide insights into which processes may impact this. We found, however, that the methods with which these culturing experiments are performed also influence 13C fractionation. Caution should therefore be taken when extrapolating results from these experiments to proxy applications.
Weilin Huang, Peter M. van Bodegom, Toni Viskari, Jari Liski, and Nadejda A. Soudzilovskaia
Biogeosciences, 19, 1469–1490, https://doi.org/10.5194/bg-19-1469-2022, https://doi.org/10.5194/bg-19-1469-2022, 2022
Short summary
Short summary
This work focuses on one of the essential pathways of mycorrhizal impact on C cycles: the mediation of plant litter decomposition. We present a model based on litter chemical quality which precludes a conclusive examination of mycorrhizal impacts on soil C. It improves long-term decomposition predictions and advances our understanding of litter decomposition dynamics. It creates a benchmark in quantitatively examining the impacts of plant–microbe interactions on soil C dynamics.
Julie Dinasquet, Estelle Bigeard, Frédéric Gazeau, Farooq Azam, Cécile Guieu, Emilio Marañón, Céline Ridame, France Van Wambeke, Ingrid Obernosterer, and Anne-Claire Baudoux
Biogeosciences, 19, 1303–1319, https://doi.org/10.5194/bg-19-1303-2022, https://doi.org/10.5194/bg-19-1303-2022, 2022
Short summary
Short summary
Saharan dust deposition of nutrients and trace metals is crucial to microbes in the Mediterranean Sea. Here, we tested the response of microbial and viral communities to simulated dust deposition under present and future conditions of temperature and pH. Overall, the effect of the deposition was dependent on the initial microbial assemblage, and future conditions will intensify microbial responses. We observed effects on trophic interactions, cascading all the way down to viral processes.
Ralf Conrad, Pengfei Liu, and Peter Claus
Biogeosciences, 18, 6533–6546, https://doi.org/10.5194/bg-18-6533-2021, https://doi.org/10.5194/bg-18-6533-2021, 2021
Short summary
Short summary
Acetate is an important intermediate during the anaerobic degradation of organic matter. It is consumed by methanogenic and sulfidogenic microorganisms accompanied by stable carbon isotope fractionation. We determined isotope fractionation under different conditions in two paddy soils and two lake sediments and also determined the composition of the microbial communities. Despite a relatively wide range of experimental conditions, the range of fractionation factors was quite moderate.
Natalie R. Cohen, Abigail E. Noble, Dawn M. Moran, Matthew R. McIlvin, Tyler J. Goepfert, Nicholas J. Hawco, Christopher R. German, Tristan J. Horner, Carl H. Lamborg, John P. McCrow, Andrew E. Allen, and Mak A. Saito
Biogeosciences, 18, 5397–5422, https://doi.org/10.5194/bg-18-5397-2021, https://doi.org/10.5194/bg-18-5397-2021, 2021
Short summary
Short summary
A previous study documented an intense hydrothermal plume in the South Pacific Ocean; however, the iron release associated with this plume and the impact on microbiology were unclear. We describe metal concentrations associated with multiple hydrothermal plumes in this region and protein signatures of plume-influenced microbes. Our findings demonstrate that resources released from these systems can be transported away from their source and may alter the physiology of surrounding microbes.
Sabyasachi Bhattacharya, Tarunendu Mapder, Svetlana Fernandes, Chayan Roy, Jagannath Sarkar, Moidu Jameela Rameez, Subhrangshu Mandal, Abhijit Sar, Amit Kumar Chakraborty, Nibendu Mondal, Sumit Chatterjee, Bomba Dam, Aditya Peketi, Ranadhir Chakraborty, Aninda Mazumdar, and Wriddhiman Ghosh
Biogeosciences, 18, 5203–5222, https://doi.org/10.5194/bg-18-5203-2021, https://doi.org/10.5194/bg-18-5203-2021, 2021
Short summary
Short summary
Physicochemical determinants of microbiome architecture across continental shelves–slopes are unknown, so we explored the geomicrobiology along 3 m sediment horizons of seasonal (shallow coastal) and perennial (deep sea) hypoxic zones of the Arabian Sea. Nature, concentration, and fate of the organic matter delivered to the sea floor were found to shape the microbiome across the western Indian margin, under direct–indirect influence of sedimentation rate and water column O2 level.
Aditi Sengupta, Sarah J. Fansler, Rosalie K. Chu, Robert E. Danczak, Vanessa A. Garayburu-Caruso, Lupita Renteria, Hyun-Seob Song, Jason Toyoda, Jacqueline Hager, and James C. Stegen
Biogeosciences, 18, 4773–4789, https://doi.org/10.5194/bg-18-4773-2021, https://doi.org/10.5194/bg-18-4773-2021, 2021
Short summary
Short summary
Conceptual models link microbes with the environment but are untested. We test a recent model using riverbed sediments. We exposed sediments to disturbances, going dry and becoming wet again. As the length of dry conditions got longer, there was a sudden shift in the ecology of microbes, chemistry of organic matter, and rates of microbial metabolism. We propose a new model based on feedbacks initiated by disturbance that cascade across biological, chemical, and functional aspects of the system.
Cora Hörstmann, Eric J. Raes, Pier Luigi Buttigieg, Claire Lo Monaco, Uwe John, and Anya M. Waite
Biogeosciences, 18, 3733–3749, https://doi.org/10.5194/bg-18-3733-2021, https://doi.org/10.5194/bg-18-3733-2021, 2021
Short summary
Short summary
Microbes are the main drivers of productivity and nutrient cycling in the ocean. We present a combined approach assessing C and N uptake and microbial community diversity across ecological provinces in the Southern Ocean and southern Indian Ocean. Provinces showed distinct genetic fingerprints, but microbial activity varied gradually across regions, correlating with nutrient concentrations. Our study advances the biogeographic understanding of microbial diversity across C and N uptake regimes.
Nimrod Wieler, Tali Erickson Gini, Osnat Gillor, and Roey Angel
Biogeosciences, 18, 3331–3342, https://doi.org/10.5194/bg-18-3331-2021, https://doi.org/10.5194/bg-18-3331-2021, 2021
Short summary
Short summary
Biological rock crusts (BRCs) are common microbial-based assemblages covering rocks in drylands. BRCs play a crucial role in arid environments because of the limited activity of plants and soil. Nevertheless, BRC development rates have never been dated. Here we integrated archaeological, microbiological and geological methods to provide a first estimation of the growth rate of BRCs under natural conditions. This can serve as an affordable dating tool in archaeological sites in arid regions.
Michal Elul, Maxim Rubin-Blum, Zeev Ronen, Itay Bar-Or, Werner Eckert, and Orit Sivan
Biogeosciences, 18, 2091–2106, https://doi.org/10.5194/bg-18-2091-2021, https://doi.org/10.5194/bg-18-2091-2021, 2021
Mindaugas Zilius, Irma Vybernaite-Lubiene, Diana Vaiciute, Donata Overlingė, Evelina Grinienė, Anastasija Zaiko, Stefano Bonaglia, Iris Liskow, Maren Voss, Agneta Andersson, Sonia Brugel, Tobia Politi, and Paul A. Bukaveckas
Biogeosciences, 18, 1857–1871, https://doi.org/10.5194/bg-18-1857-2021, https://doi.org/10.5194/bg-18-1857-2021, 2021
Short summary
Short summary
In fresh and brackish waters, algal blooms are often dominated by cyanobacteria, which have the ability to utilize atmospheric nitrogen. Cyanobacteria are also unusual in that they float to the surface and are dispersed by wind-driven currents. Their patchy and dynamic distribution makes it difficult to track their abundance and quantify their effects on nutrient cycling. We used remote sensing to map the distribution of cyanobacteria in a large Baltic lagoon and quantify their contributions.
Saly Jaber, Muriel Joly, Maxence Brissy, Martin Leremboure, Amina Khaled, Barbara Ervens, and Anne-Marie Delort
Biogeosciences, 18, 1067–1080, https://doi.org/10.5194/bg-18-1067-2021, https://doi.org/10.5194/bg-18-1067-2021, 2021
Short summary
Short summary
Our study is of interest to atmospheric scientists and environmental microbiologists, as we show that clouds can be considered a medium where bacteria efficiently degrade and transform amino acids, in competition with chemical processes. As current atmospheric multiphase models are restricted to chemical degradation of organic compounds, our conclusions motivate further model development.
Kahina Djaoudi, France Van Wambeke, Aude Barani, Nagib Bhairy, Servanne Chevaillier, Karine Desboeufs, Sandra Nunige, Mohamed Labiadh, Thierry Henry des Tureaux, Dominique Lefèvre, Amel Nouara, Christos Panagiotopoulos, Marc Tedetti, and Elvira Pulido-Villena
Biogeosciences, 17, 6271–6285, https://doi.org/10.5194/bg-17-6271-2020, https://doi.org/10.5194/bg-17-6271-2020, 2020
Romie Tignat-Perrier, Aurélien Dommergue, Alban Thollot, Olivier Magand, Timothy M. Vogel, and Catherine Larose
Biogeosciences, 17, 6081–6095, https://doi.org/10.5194/bg-17-6081-2020, https://doi.org/10.5194/bg-17-6081-2020, 2020
Short summary
Short summary
The adverse atmospheric environmental conditions do not appear suited for microbial life. We conducted the first global comparative metagenomic analysis to find out if airborne microbial communities might be selected by their ability to resist these adverse conditions. The relatively higher concentration of fungi led to the observation of higher proportions of stress-related functions in air. Fungi might likely resist and survive atmospheric physical stress better than bacteria.
Yanhong Lu, Shunyan Cheung, Ling Chen, Shuh-Ji Kao, Xiaomin Xia, Jianping Gan, Minhan Dai, and Hongbin Liu
Biogeosciences, 17, 6017–6032, https://doi.org/10.5194/bg-17-6017-2020, https://doi.org/10.5194/bg-17-6017-2020, 2020
Short summary
Short summary
Through a comprehensive investigation, we observed differential niche partitioning among diverse ammonia-oxidizing archaea (AOA) sublineages in a typical subtropical estuary. Distinct AOA communities observed at DNA and RNA levels suggested that a strong divergence in ammonia-oxidizing activity among different AOA groups occurs. Our result highlights the importance of identifying major ammonia oxidizers at RNA level in future studies.
Anna-Neva Visser, Scott D. Wankel, Pascal A. Niklaus, James M. Byrne, Andreas A. Kappler, and Moritz F. Lehmann
Biogeosciences, 17, 4355–4374, https://doi.org/10.5194/bg-17-4355-2020, https://doi.org/10.5194/bg-17-4355-2020, 2020
Short summary
Short summary
This study focuses on the chemical reaction between Fe(II) and nitrite, which has been reported to produce high levels of the greenhouse gas N2O. We investigated the extent to which dead biomass and Fe(II) minerals might enhance this reaction. Here, nitrite reduction was highest when both additives were present but less pronounced if only Fe(II) minerals were added. Both reaction systems show distinct differences, rather low N2O levels, and indicated the abiotic production of N2.
Lisa Tanet, Séverine Martini, Laurie Casalot, and Christian Tamburini
Biogeosciences, 17, 3757–3778, https://doi.org/10.5194/bg-17-3757-2020, https://doi.org/10.5194/bg-17-3757-2020, 2020
Short summary
Short summary
Bioluminescent bacteria, the most abundant light-emitting organisms in the ocean, can be free-living, be symbiotic or colonize organic particles. This review suggests that they act as a visual target and may indirectly influence the sequestration of biogenic carbon in oceans by increasing the attraction rate for consumers. We summarize the instrumentation available to quantify this impact in future studies and propose synthetic figures integrating these ecological and biogeochemical concepts.
Michael Lintner, Bianca Biedrawa, Julia Wukovits, Wolfgang Wanek, and Petra Heinz
Biogeosciences, 17, 3723–3732, https://doi.org/10.5194/bg-17-3723-2020, https://doi.org/10.5194/bg-17-3723-2020, 2020
Short summary
Short summary
Foraminifera are unicellular marine organisms that play an important role in the marine element cycle. Changes of environmental parameters such as salinity or temperature have a significant impact on the faunal assemblages. Our experiments show that changing salinity in the German Wadden Sea immediately influences the foraminiferal community. It seems that A. tepida is better adapted to salinity fluctuations than H. germanica.
Kathrin Busch, Ulrike Hanz, Furu Mienis, Benjamin Mueller, Andre Franke, Emyr Martyn Roberts, Hans Tore Rapp, and Ute Hentschel
Biogeosciences, 17, 3471–3486, https://doi.org/10.5194/bg-17-3471-2020, https://doi.org/10.5194/bg-17-3471-2020, 2020
Short summary
Short summary
Seamounts are globally abundant submarine structures that offer great potential to study the impacts and interactions of environmental gradients at a single geographic location. In an exemplary way, we describe potential mechanisms by which a seamount can affect the structure of pelagic and benthic (sponge-)associated microbial communities. We conclude that the geology, physical oceanography, biogeochemistry, and microbiology of seamounts are even more closely linked than currently appreciated.
Alexander Bratek, Justus E. E. van
Beusekom, Andreas Neumann, Tina Sanders, Jana Friedrich, Kay-Christian Emeis, and Kirstin Dähnke
Biogeosciences, 17, 2839–2851, https://doi.org/10.5194/bg-17-2839-2020, https://doi.org/10.5194/bg-17-2839-2020, 2020
Short summary
Short summary
The following paper highlights the importance of benthic N-transformation rates in different sediment types in the southern North Sea as a source of fixed nitrogen for primary producers and also as a sink of fixed nitrogen. Sedimentary fluxes of dissolved inorganic nitrogen support ∼7 to 59 % of the average annual primary production. Semi-permeable and permeable sediments contribute ∼68 % of the total benthic N2 production rates, counteracting eutrophication in the southern North Sea.
Sabine Haalboom, David M. Price, Furu Mienis, Judith D. L. van Bleijswijk, Henko C. de Stigter, Harry J. Witte, Gert-Jan Reichart, and Gerard C. A. Duineveld
Biogeosciences, 17, 2499–2519, https://doi.org/10.5194/bg-17-2499-2020, https://doi.org/10.5194/bg-17-2499-2020, 2020
Short summary
Short summary
Mineral mining in deep-sea hydrothermal settings will lead to the formation of plumes of fine-grained, chemically reactive, suspended matter. Understanding how natural hydrothermal plumes evolve as they disperse from their source, and how they affect their surrounding environment, may help in characterising the behaviour of the diluted part of mining plumes. The natural plume provided a heterogeneous, geochemically enriched habitat conducive to the development of a distinct microbial ecology.
Noelle A. Held, Eric A. Webb, Matthew M. McIlvin, David A. Hutchins, Natalie R. Cohen, Dawn M. Moran, Korinna Kunde, Maeve C. Lohan, Claire Mahaffey, E. Malcolm S. Woodward, and Mak A. Saito
Biogeosciences, 17, 2537–2551, https://doi.org/10.5194/bg-17-2537-2020, https://doi.org/10.5194/bg-17-2537-2020, 2020
Short summary
Short summary
Trichodesmium is a globally important marine nitrogen fixer that stimulates primary production in the surface ocean. We surveyed metaproteomes of Trichodesmium populations across the North Atlantic and other oceans, and we found that they experience simultaneous phosphate and iron stress because of the biophysical limits of nutrient uptake. Importantly, nitrogenase was most abundant during co-stress, indicating the potential importance of this phenotype to global nitrogen and carbon cycling.
Helmke Hepach, Claire Hughes, Karen Hogg, Susannah Collings, and Rosie Chance
Biogeosciences, 17, 2453–2471, https://doi.org/10.5194/bg-17-2453-2020, https://doi.org/10.5194/bg-17-2453-2020, 2020
Short summary
Short summary
Tropospheric iodine takes part in numerous atmospheric chemical cycles, including tropospheric ozone destruction and aerosol formation. Due to its significance for atmospheric processes, it is crucial to constrain its sources and sinks. This paper aims at investigating and understanding features of biogenic iodate-to-iodide reduction in microalgal monocultures. We find that phytoplankton senescence may play a crucial role in the release of iodide to the marine environment.
Roger D. Finlay, Shahid Mahmood, Nicholas Rosenstock, Emile B. Bolou-Bi, Stephan J. Köhler, Zaenab Fahad, Anna Rosling, Håkan Wallander, Salim Belyazid, Kevin Bishop, and Bin Lian
Biogeosciences, 17, 1507–1533, https://doi.org/10.5194/bg-17-1507-2020, https://doi.org/10.5194/bg-17-1507-2020, 2020
Short summary
Short summary
Effects of biological activity on mineral weathering operate at scales ranging from short-term, microscopic interactions to global, evolutionary timescale processes. Microorganisms have had well-documented effects at large spatio-temporal scales, but to establish the quantitative significance of microscopic measurements for field-scale processes, higher-resolution studies of liquid chemistry at local weathering sites and improved upscaling to soil-scale dissolution rates are still required.
Christine Rooks, James Kar-Hei Fang, Pål Tore Mørkved, Rui Zhao, Hans Tore Rapp, Joana R. Xavier, and Friederike Hoffmann
Biogeosciences, 17, 1231–1245, https://doi.org/10.5194/bg-17-1231-2020, https://doi.org/10.5194/bg-17-1231-2020, 2020
Short summary
Short summary
Sponge grounds are known as nutrient sources, providing nitrate and ammonium to the ocean. We found that they also can do the opposite: in six species from Arctic and North Atlantic sponge grounds, we measured high rates of denitrification, which remove these nutrients from the sea. Rates were highest when the sponge tissue got low in oxygen, which happens when sponges stop pumping because of stress. Sponge grounds may become nutrient sinks when exposed to stress.
Cheng Li, Clare E. Reimers, and Yvan Alleau
Biogeosciences, 17, 597–607, https://doi.org/10.5194/bg-17-597-2020, https://doi.org/10.5194/bg-17-597-2020, 2020
Short summary
Short summary
Novel filamentous cable bacteria that grow in the top layer of intertidal mudflat sediment were attracted to electrodes poised at a positive electrical potential. Several diverse morphologies of Desulfobulbaceae filaments, cells, and colonies were observed on the electrode surface. These observations provide information to suggest conditions that will induce cable bacteria to perform electron donation to an electrode, informing future experiments that culture cable bacteria outside of sediment.
Marie Maßmig, Jan Lüdke, Gerd Krahmann, and Anja Engel
Biogeosciences, 17, 215–230, https://doi.org/10.5194/bg-17-215-2020, https://doi.org/10.5194/bg-17-215-2020, 2020
Short summary
Short summary
Little is known about the rates of bacterial element cycling in oxygen minimum zones (OMZs). We measured bacterial production and rates of extracellular hydrolytic enzymes at various in situ oxygen concentrations in the OMZ off Peru. Our field data show unhampered bacterial activity at low oxygen concentrations. Meanwhile bacterial degradation of organic matter substantially contributed to the formation of the OMZ.
Anna T. Kunert, Mira L. Pöhlker, Kai Tang, Carola S. Krevert, Carsten Wieder, Kai R. Speth, Linda E. Hanson, Cindy E. Morris, David G. Schmale III, Ulrich Pöschl, and Janine Fröhlich-Nowoisky
Biogeosciences, 16, 4647–4659, https://doi.org/10.5194/bg-16-4647-2019, https://doi.org/10.5194/bg-16-4647-2019, 2019
Short summary
Short summary
A screening of more than 100 strains from 65 different species revealed that the ice nucleation activity within the fungal genus Fusarium is more widespread than previously assumed. Filtration experiments suggest that the single cell-free Fusarium IN is smaller than 100 kDa (~ 6 nm) and that aggregates can be formed in solution. Exposure experiments, freeze–thaw cycles, and long-term storage tests demonstrate a high stability of Fusarium IN under atmospherically relevant conditions.
Qing Wang, Renbin Zhu, Yanling Zheng, Tao Bao, and Lijun Hou
Biogeosciences, 16, 4113–4128, https://doi.org/10.5194/bg-16-4113-2019, https://doi.org/10.5194/bg-16-4113-2019, 2019
Short summary
Short summary
We investigated abundance, potential activity, and diversity of soil ammonia-oxidizing archaea (AOA) and bacteria (AOB) in five Antarctic tundra patches, including penguin colony, seal colony, and tundra marsh. We have found (1) sea animal colonization increased AOB population size.; (2) AOB contributed to ammonia oxidation rates more than AOA in sea animal colonies; (3) community structures of AOB and AOA were closely related to soil biogeochemical processes associated with animal activities.
Yalda Vasebi, Marco E. Mechan Llontop, Regina Hanlon, David G. Schmale III, Russell Schnell, and Boris A. Vinatzer
Biogeosciences, 16, 1675–1683, https://doi.org/10.5194/bg-16-1675-2019, https://doi.org/10.5194/bg-16-1675-2019, 2019
Short summary
Short summary
Ice nucleation particles (INPs) help ice form at temperatures as high as −4 °C and contribute to the formation of precipitation. Leaf litter contains a high concentration of INPs, but the organisms that produce them are unknown. Here, we cultured two bacteria and one fungus from leaf litter that produce INPs similar to those found in leaf litter. This suggests that leaf litter may be an important habitat of these organisms and supports a role of these organisms as producers of atmospheric INPs.
Cited articles
Aggarwal, S. G. and Kawamura, K.: Molecular distributions and stable carbon isotopic compositions of dicarboxylic acids and related compounds in aerosols from Sapporo, Japan: Implications for photochemical aging during long-range atmospheric transport, J. Geophys. Res.-Atmos., 113, D14301, https://doi.org/10.1029/2007JD009365, 2008.
Andersson, A., Weiss, N., Rainey, F., and Salkinoja-Salonen, M.: Dust-borne bacteria in animal sheds, schools and children's day care centres, J. Appl. Microbiol., 86, 622–634, 1999.
Balkwill, D. L., Leach, F. R., Wilson, J. T., McNabb, J. F., and White, D. C.: Equivalence of microbial biomass measures based on membrane lipid and cell wall components, adenosine triphosphate, and direct counts in subsurface aquifer sediments, Microb. Ecol., 16, 73–84, 1988.
Blokker, P., Schouten, S., de Leeuw, J. W., Damsté, J. S. S., and van den Ende, H.: Molecular structure of the resistant biopolymer in zygospore cell walls of Chlamydomonas monoica, Planta, 207, 539–543, 1999.
Cardoso, J. N. and Eglinton, G.: The use of hydroxyacids as geochemical indicators, Geochim. Cosmochim. Ac., 47, 723–730, 1983.
Conte, M. H. and Weber, J.: Long-range atmospheric transport of terrestrial biomarkers to the western North Atlantic, Global Biogeochem. Cy., 16, 1142, https://doi.org/10.1029/2002GB001922, 2002.
Cranwell, P.: The stereochemistry of 2-and 3-hydroxy fatty acids in a recent lacustrine sediment, Geochim. Cosmochim. Ac., 45, 547–552, 1981.
Draxler, R. and Rolph, G.: HYSPLIT (HYbrid Single-Particle Lagrangian Integrated Trajectory), NOAA Air Resources Laboratory, College Park, MD, Model access via NOAA ARL READY Website, available at: http://ready.arl.noaa.gov/HYSPLIT.php (last access: 21 May 2015), 2013.
Eglinton, G., Hunneman, D., and Douraghi-Zadeh, K.: Gas chromatographic–mass spectrometric studies of long chain hydroxy acids – II: The hydroxy acids and fatty acids of a 5000-year-old lacustrine sediment, Tetrahedron, 24, 5929–5941, 1968.
Feng, X., Gustafsson, Ö., Holmes, R. M., Vonk, J. E., van Dongen, B. E., Semiletov, I. P., Dudarev, O. V., Yunker, M. B., Macdonald, R. W., Montluçon, D. B., and Eglinton, T. I.: Multi-molecular tracers of terrestrial carbon transfer across the pan-Arctic: comparison of hydrolyzable components with plant wax lipids and lignin phenols, Biogeosciences, 12, 4841–4860, https://doi.org/10.5194/bg-12-4841-2015, 2015.
Gagosian, R. B., Peltzer, E. T., and Zafiriou, O. C.: Atmospheric transport of continentally derived lipids to the tropical North Pacific, Nature, 291, 312–314, 1981.
Gagosian, R. B., Peltzer, E. T., and Merrill, J. T.: Long-range transport of terrestrially derived lipids in aerosols from the South Pacific, Nature, 325, 800–803, https://doi.org/10.1038/325800a0, 1987.
Golokhvast, K. S.: Airborne biogenic particles in the snow of the cities of the russian far east as potential allergic compounds, J. Immunol. Res., 2014, 141378, https://doi.org/10.1155/2014/141378, 2014.
Goossens, H., Rijpstra, I. W. C., Düren, R., De Leeuw, J., and Schenck, P.: Bacterial contribution to sedimentary organic matter; a comparative study of lipid moieties in bacteria and recent sediments, Org. Geochem., 10, 683–696, 1986.
Gould, J. E.: Is rainwater safe to drink? A review of recent findings, in: Proceedings of the Ninth International Rainwater Catchment Systems Conference (IRCSA), Warwick's School of Engineering, Petrolina, Brazil, 6–9 July 1999.
Hines, C. J., Milton, D. K., Larsson, L., Petersen, M. R., Fisk, W. J., and Mendell, M. J.: Characterization and Variability of Endotoxin and 3-Hydroxy Fatty Acids in an Office Building During a Particle Intervention Study, Indoor Air, 10, 2–12, 2000.
Hines, C. J., Waters, M., Larsson, L., Petersen, M., Saraf, A., and Milton, D.: Characterization of endotoxin and 3-hydroxy fatty acid levels in air and settled dust from commercial aircraft cabins, Indoor Air, 13, 166–173, 2003.
Jacobs, R. R.: Airborne endotoxins: an association with occupational lung disease, Applied Industrial Hygiene, 4, 50–56, 1989.
Kawamura, K.: Land-derived lipid class compounds in the deep-sea sediments and marine aerosols from North Pacific, Biogeochemical Processes and Ocean Flux in the Western Pacific, Terra Scientific Publishing Company (TERRAPUB), Tokyo, 31–51, 1995.
Kawamura, K. and Gagosian, R.: Atmospheric transport of soil-derived dicarboxylic acids over the North Pacific Ocean, Naturwissenschaften, 77, 25–27, 1990.
Kawamura, K. and Ishiwatari, R.: Fatty acid geochemistry of a 200 m sediment core from Lake Biwa, Japan. Early diagenesis and paleoenvironmental information, Geochim. Cosmochim. Ac., 48, 251–266, 1984.
Kawamura, K. and Kaplan, I. R.: Organic compounds in the rainwater of Los Angeles, Environ. Sci. Technol., 17, 497–501, 1983.
Kawamura, K. and Kaplan, I.: Biogenic and anthropogenic organic compounds in rain and snow samples collected in southern California, Atmos. Environ., 20, 115–124, 1986.
Kawamura, K., Ishiwatari, R., and Ogura, K.: Early diagenesis of organic matter in the water column and sediments: microbial degradation and resynthesis of lipids in Lake Haruna, Org. Geochem., 11, 251–264, 1987.
Kawamura, K., Ishimura, Y., and Yamazaki, K.: Four years' observations of terrestrial lipid class compounds in marine aerosols from the western North Pacific, Global Biogeochem. Cy., 17, 1003–1022, https://doi.org/10.1029/2001GB001810, 2003.
Keinänen, M., Korhonen, L., Martikainen, P., Vartiainen, T., Miettinen, I., Lehtola, M., Nenonen, K., Pajunen, H., and Kontro, M.: Gas chromatographic–mass spectrometric detection of 2-and 3-hydroxy fatty acids as methyl esters from soil, sediment and biofilm, J. Chromatogr. B, 783, 443–451, 2003.
Larsson, L.: Determination of microbial chemical markers by gas chromatography-mass spectrometry-potential for diagnosis and studies on metabolism in situ, Apmis, 102, 161–169, 1994.
Lee, A. K. Y., Chan, C. K., Fang, M., and Lau, A. P. S.: The 3-hydroxy fatty acids as biomarkers for quantification and characterization of endotoxins and Gram-negative bacteria in atmospheric aerosols in Hong Kong, Atmos. Environ., 38, 6307–6317, 2004.
Lee, A. K. Y., Lau, A. P., Cheng, J. Y., Fang, M., and Chan, C. K.: Source identification analysis for the airborne bacteria and fungi using a biomarker approach, Atmos. Environ., 41, 2831–2843, 2007.
Lehninger, A. L.: Biochemistry: the molecular basis of cell structure and functions, Worth, New York, 659, 1975.
Lüderitz, O., Galanos, C., and Rietschel, E. T.: Endotoxins of gram-negative bacteria, Pharmacol. Therapeut., 15, 383–402, 1981.
Lye, D. J.: Health risks associated with consumption of untreated water from household roof catchment systems, Journal of American Water Resource Association, 38, 1301–1306, 2002.
Matsumoto, G. I. and Nagashima, H.: Occurrence of 3-hydroxy acids in microalgae and cyanobacteria and their geochemical significance, Geochim. Cosmochim. Ac., 48, 1683–1687, 1984.
Mielniczuk, Z., Mielniczuk, E., and Larsson, L.: Gas chromatography-mass spectrometry methods for analysis of 2- and 3-hydroxylated fatty acids: Application for endotoxin measurement, J. Microbiol. Meth., 17, 91–102, 1993.
Milton, D. K.: Bacterial endotoxins: a review of health effects and potential impact in the indoor environment, in: Indoor Air and Human Health, edited by: Gammage, R. B. and Berven, B. A., Lewis Publishers, CRC Press, Florida, 2nd Edn., 179–195, 1996.
Molina, I., Bonaventure, G., Ohlrogge, J., and Pollard, M.: The lipid polyester composition of Arabidopsis thaliana and Brassica napus seeds, Phytochemistry, 67, 2597–2610, 2006.
Morris, C. E., Sands, D. C., Bardin, M., Jaenicke, R., Vogel, B., Leyronas, C., Ariya, P. A., and Psenner, R.: Microbiology and atmospheric processes: research challenges concerning the impact of airborne micro-organisms on the atmosphere and climate, Biogeosciences, 8, 17–25, https://doi.org/10.5194/bg-8-17-2011, 2011.
Pavuluri, C. M., Kawamura, K., Uchida, M., Kondo, M., and Fu, P.: Enhanced modern carbon and biogenic organic tracers in Northeast Asian aerosols during spring/summer, J. Geophys. Res.-Atmos., 118, 2362–2371, 2013.
Polymenakou, P. N.: Atmosphere: a source of pathogenic or beneficial microbes?, Atmosphere, 3, 87–102, 2012.
Ratledge, C. and Wilkinson, S.: Fatty acids, related and derived lipids, Microbial lipids, 1, 23–52, 1988.
Rietschel, E. T., Wollenweber, H. W., Brade, H., Zähringer, U., Lindner, B., Seydel, U., Bradaczek, H., Barnickel, G., Labischinski, H., and Giesbrecht, P. (Eds.): Structure and conformation of lipid A component of lipopolysaccharides, Elsevier Science, Amsterdam, 187–220, 1984.
Sankelo, P., Kawamura, K., Seki, O., Shibata, H., and Bendle, J.: n-Alkanes in fresh snow in Hokkaido, Japan: implications for ice core studies, Arct. Antarct. Alp. Res., 45, 119–131, 2013.
Saraf, A., Larsson, L., Burge, H., and Milton, D.: Quantification of ergosterol and 3-hydroxy fatty acids in settled house dust by gas chromatography-mass spectrometry: comparison with fungal culture and determination of endotoxin by a Limulus amebocyte lysate assay, Applied and Environ. Microbiol., 63, 2554–2559, 1997.
Satsumabayashi, H., Nishizawa, H., Yokouchi, Y., and Ueda, H.: Pinonaldehyde and some other organics in rain and snow in central Japan, Chemosphere, 45, 887–891, 2001.
Simoneit, B. R.: Biogenic lipids in particulates from the lower atmosphere over the eastern Atlantic, Nature, 267, 682–685, 1977.
Simoneit, B. R., Kobayashi, M., Mochida, M., Kawamura, K., Lee, M., Lim, H. J., Turpin, B. J., and Komazaki, Y.: Composition and major sources of organic compounds of aerosol particulate matter sampled during the ACE-Asia campaign, J. Geophys. Res.-Atmos., 109, 1–22, https://doi.org/10.1029/2004JD004598, 2004.
Spaan, S., Smit, L., Eduard, W., Larsson, L., Arts, H., Wouters, I. M., and Heederik, D.: Endotoxin exposure in sewage treatment workers: investigation of exposure variability and comparison of analytical techniques, Ann. Agric. Environ. Med., 15, 251–261, 2008.
Steinberger, Y., Zelles, L., Bai, Q. Y., von Lützow, M., and Munch, J. C.: Phospholipid fatty acid profiles as indicators for the microbial community structure in soils along a climatic transect in the Judean Desert, Biol. Fert. Soils, 28, 292–300, 1999.
Stodola, F. H., Deinema, M. H., and Spencer, J.: Extracellular lipids of yeasts, Bacteriol. Rev., 31, 194–213, 1967.
Szponar, B., Norin, E., Midtvedt, T., and Larsson, L.: Limitations in the use of 3-hydroxy fatty acid analysis to determine endotoxin in mammalian samples, Journal of Microbiological Methods, 50, 283-289, 2002.
Tyagi, P., Ishimura, Y., and Kawamura, K.: Hydroxy fatty acids in marine aerosols as microbial tracers: 4-year study on β-and ω-hydroxy fatty acids from remote Chichijima Island in the western North Pacific, Atmos. Environ., 115, 89–100, 2015.
Van Dyk, M., Kock, J., and Botha, A.: Hydroxy long-chain fatty acids in fungi, World J. Microb. Biot., 10, 495–504, 1994.
Volkman, J., Johns, R., Gillan, F., Perry, G., and Bavor, H.: Microbial lipids of an intertidal sediment – I. Fatty acids and hydrocarbons, Geochim. Cosmochimi. Ac., 44, 1133–1143, 1980.
Wakeham, S. G.: Monocarboxylic, dicarboxylic and hydroxy acids released by sequential treatments of suspended particles and sediments of the Black Sea, Org. Geochem., 30, 1059–1074, 1999.
Wakeham, S. G., Pease, T. K., and Benner, R.: Hydroxy fatty acids in marine dissolved organic matter as indicators of bacterial membrane material, Org. Geochem., 34, 857–868, 2003.
Walters, M., Milton, D., Larsson, L., and Ford, T.: Airborne environmental endotoxin: a cross-validation of sampling and analysis techniques, Appl. Environ. Microb., 60, 996–1005, 1994.
Westphal, O.: Bacterial endotoxins (part 1 of 2), Int. Arch. Allergy. Imm., 49, 1–21, 1975.
Wilkinson, S. G.: Gram-negative bacteria, in: Microbial Lipids, edited by: Ratledge, C. and Wilkinson, S. G., Vol. 1., Academic Press, New York, 299–488, 1988.
Yamamoto, S., Kawamura, K., and Seki, O.: Long-range atmospheric transport of terrestrial biomarkers by the Asian winter monsoon: Evidence from fresh snow from Sapporo, northern Japan, Atmos. Environ., 45, 3553–3560, 2011.
Zelles, L.: Phospholipid fatty acid profiles in selected members of soil microbial communities, Chemosphere, 35, 275–294, 1997.
Zelles, L. and Bai, Q. Y.: Fatty acid patterns of phospholipids and lipopolysaccharids in environmental samples, Chemosphere, 28, 391–411, 1994.
Zhang, Z., Metzger, P., and Sachs, J. P.: Bound lipid biomarkers in sediments from El Junco Lake, Galápagos Islands, Org. Geochem., 75, 122–128, 2014.
Short summary
Our manuscript represents the first field-based data set on the abundances of hydroxy fatty acids (FAs) in fresh snow and its filtering capacity to reduce hydroxy FA burden on the atmosphere.
•Hydroxy fatty acids (FAs) in snow indicate a contribution from soil microbes and higher plants.
•Air mass back trajectories reveal their transport from Russia, Siberia and China.
We conducted the present study to better understand the impact of aeolian transport on bacteria & their filtering by snow.
Our manuscript represents the first field-based data set on the abundances of hydroxy fatty...
Altmetrics
Final-revised paper
Preprint