Articles | Volume 15, issue 14
https://doi.org/10.5194/bg-15-4333-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-15-4333-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
18 Jul 2018
Research article |
| 18 Jul 2018
| 18 Jul 2018
Modelling N2 fixation related to Trichodesmium sp.: driving processes and impacts on primary production in the tropical Pacific Ocean
Cyril Dutheil
CORRESPONDING AUTHOR
Centre IRD, Nouméa, New Caledonia
LOCEAN Laboratory, IPSL, Sorbonne Universités (UPMC, Univ Paris 06)-CNRS-IRD-MNHN, Paris, France
Olivier Aumont
LOCEAN Laboratory, IPSL, Sorbonne Universités (UPMC, Univ Paris 06)-CNRS-IRD-MNHN, Paris, France
Thomas Gorguès
Laboratoire d'Océanographie Physique et Spatiale (LOPS), Univ. Brest-CNRS-Ifremer-IRD, Plouzané, France
Anne Lorrain
LEMAR, UMR 6539, UBO-CNRS-Ifremer-IRD, IUEM, Plouzané, France
Sophie Bonnet
Aix Marseille Université, CNRS/INSU, Université de Toulon, IRD, Mediterranean Institute of Oceanography (MIO) UM 110, 13288, Marseille, France
Martine Rodier
Environnement Insulaire Océanien (EIO), UMR 241 (Univ. de Polynésie Française, IRD, ILM, IFREMER), Tahiti, French Polynesia
Cécile Dupouy
Centre IRD, Nouméa, New Caledonia
Aix Marseille Université, CNRS/INSU, Université de Toulon, IRD, Mediterranean Institute of Oceanography (MIO) UM 110, 13288, Marseille, France
Takuhei Shiozaki
Research and Development Center for Global Change, Japan Agency for Marine-Earth Science and Technology, Yokosuka, Japan
Christophe Menkes
Centre IRD, Nouméa, New Caledonia
LOCEAN Laboratory, IPSL, Sorbonne Universités (UPMC, Univ Paris 06)-CNRS-IRD-MNHN, Paris, France
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Sarah Albernhe, Thomas Gorgues, Olivier Titaud, Patrick Lehodey, Christophe Menkes, and Anna Conchon
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N2 fixation by marine diazotrophs is an important bioavailable N source to the global ocean. This updated global oceanic diazotroph database increases the number of in situ measurements of N2 fixation rates, diazotrophic cell abundances, and nifH gene copy abundances by 184 %, 86 %, and 809 %, respectively. Using the updated database, the global marine N2 fixation rate is estimated at 223 ± 30 Tg N yr−1, which triplicates that using the original database.
Alban Planchat, Lester Kwiatkowski, Laurent Bopp, Olivier Torres, James R. Christian, Momme Butenschön, Tomas Lovato, Roland Séférian, Matthew A. Chamberlain, Olivier Aumont, Michio Watanabe, Akitomo Yamamoto, Andrew Yool, Tatiana Ilyina, Hiroyuki Tsujino, Kristen M. Krumhardt, Jörg Schwinger, Jerry Tjiputra, John P. Dunne, and Charles Stock
Biogeosciences, 20, 1195–1257, https://doi.org/10.5194/bg-20-1195-2023, https://doi.org/10.5194/bg-20-1195-2023, 2023
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Ocean alkalinity is critical to the uptake of atmospheric carbon and acidification in surface waters. We review the representation of alkalinity and the associated calcium carbonate cycle in Earth system models. While many parameterizations remain present in the latest generation of models, there is a general improvement in the simulated alkalinity distribution. This improvement is related to an increase in the export of biotic calcium carbonate, which closer resembles observations.
Corentin Clerc, Laurent Bopp, Fabio Benedetti, Meike Vogt, and Olivier Aumont
Biogeosciences, 20, 869–895, https://doi.org/10.5194/bg-20-869-2023, https://doi.org/10.5194/bg-20-869-2023, 2023
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Gelatinous zooplankton play a key role in the ocean carbon cycle. In particular, pelagic tunicates, which feed on a wide size range of prey, produce rapidly sinking detritus. Thus, they efficiently transfer carbon from the surface to the depths. Consequently, we added these organisms to a marine biogeochemical model (PISCES-v2) and evaluated their impact on the global carbon cycle. We found that they contribute significantly to carbon export and that this contribution increases with depth.
Laurent Bopp, Olivier Aumont, Lester Kwiatkowski, Corentin Clerc, Léonard Dupont, Christian Ethé, Thomas Gorgues, Roland Séférian, and Alessandro Tagliabue
Biogeosciences, 19, 4267–4285, https://doi.org/10.5194/bg-19-4267-2022, https://doi.org/10.5194/bg-19-4267-2022, 2022
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The impact of anthropogenic climate change on the biological production of phytoplankton in the ocean is a cause for concern because its evolution could affect the response of marine ecosystems to climate change. Here, we identify biological N fixation and its response to future climate change as a key process in shaping the future evolution of marine phytoplankton production. Our results show that further study of how this nitrogen fixation responds to environmental change is essential.
Martí Galí, Marcus Falls, Hervé Claustre, Olivier Aumont, and Raffaele Bernardello
Biogeosciences, 19, 1245–1275, https://doi.org/10.5194/bg-19-1245-2022, https://doi.org/10.5194/bg-19-1245-2022, 2022
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Part of the organic matter produced by plankton in the upper ocean is exported to the deep ocean. This process, known as the biological carbon pump, is key for the regulation of atmospheric carbon dioxide and global climate. However, the dynamics of organic particles below the upper ocean layer are not well understood. Here we compared the measurements acquired by autonomous robots in the top 1000 m of the ocean to a numerical model, which can help improve future climate projections.
Maria-Theresia Verwega, Christopher J. Somes, Markus Schartau, Robyn Elizabeth Tuerena, Anne Lorrain, Andreas Oschlies, and Thomas Slawig
Earth Syst. Sci. Data, 13, 4861–4880, https://doi.org/10.5194/essd-13-4861-2021, https://doi.org/10.5194/essd-13-4861-2021, 2021
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Sophie Cravatte, Guillaume Serazin, Thierry Penduff, and Christophe Menkes
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Delphine Dissard, Gert Jan Reichart, Christophe Menkes, Morgan Mangeas, Stephan Frickenhaus, and Jelle Bijma
Biogeosciences, 18, 423–439, https://doi.org/10.5194/bg-18-423-2021, https://doi.org/10.5194/bg-18-423-2021, 2021
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Results from a data set acquired from living foraminifera T. sacculifer collected from surface waters are presented, allowing us to establish a new Mg/Ca–Sr/Ca–temperature equation improving temperature reconstructions. When combining equations, δ18Ow can be reconstructed with a precision of ± 0.5 ‰, while successive reconstructions involving Mg/Ca and δ18Oc preclude salinity reconstruction with a precision better than ± 1.69. A new direct linear fit to reconstruct salinity could be established.
Lester Kwiatkowski, Olivier Torres, Laurent Bopp, Olivier Aumont, Matthew Chamberlain, James R. Christian, John P. Dunne, Marion Gehlen, Tatiana Ilyina, Jasmin G. John, Andrew Lenton, Hongmei Li, Nicole S. Lovenduski, James C. Orr, Julien Palmieri, Yeray Santana-Falcón, Jörg Schwinger, Roland Séférian, Charles A. Stock, Alessandro Tagliabue, Yohei Takano, Jerry Tjiputra, Katsuya Toyama, Hiroyuki Tsujino, Michio Watanabe, Akitomo Yamamoto, Andrew Yool, and Tilo Ziehn
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We assess 21st century projections of marine biogeochemistry in the CMIP6 Earth system models. These models represent the most up-to-date understanding of climate change. The models generally project greater surface ocean warming, acidification, subsurface deoxygenation, and euphotic nitrate reductions but lesser primary production declines than the previous generation of models. This has major implications for the impact of anthropogenic climate change on marine ecosystems.
Vincent Echevin, Manon Gévaudan, Dante Espinoza-Morriberón, Jorge Tam, Olivier Aumont, Dimitri Gutierrez, and François Colas
Biogeosciences, 17, 3317–3341, https://doi.org/10.5194/bg-17-3317-2020, https://doi.org/10.5194/bg-17-3317-2020, 2020
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The coasts of Peru encompass the richest fisheries in the entire ocean. It is therefore very important for this country to understand how the nearshore marine ecosystem may evolve under climate change. Fine-scale numerical models are very useful because they can represent precisely the evolution of key parameters such as temperature, water oxygenation, and plankton biomass. Here we study the evolution of the Peruvian marine ecosystem in the 21st century under the worst-case climate scenario.
Marie-Hélène Radenac, Julien Jouanno, Christine Carine Tchamabi, Mesmin Awo, Bernard Bourlès, Sabine Arnault, and Olivier Aumont
Biogeosciences, 17, 529–545, https://doi.org/10.5194/bg-17-529-2020, https://doi.org/10.5194/bg-17-529-2020, 2020
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Satellite data and a remarkable set of in situ measurements show a main bloom of microscopic seaweed, the phytoplankton, in summer and a secondary bloom in December in the central equatorial Atlantic. They are driven by a strong vertical supply of nitrate in May–July and a shorter and moderate supply in November. In between, transport of low-nitrate water from the west explains most nitrate losses in the sunlit layer. Horizontal eddy-induced processes also contribute to seasonal nitrate removal.
Renaud Person, Olivier Aumont, Gurvan Madec, Martin Vancoppenolle, Laurent Bopp, and Nacho Merino
Biogeosciences, 16, 3583–3603, https://doi.org/10.5194/bg-16-3583-2019, https://doi.org/10.5194/bg-16-3583-2019, 2019
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The Antarctic Ice Sheet is considered a possibly important but largely overlooked source of iron (Fe). Here we explore its fertilization capacity by evaluating the response of marine biogeochemistry to Fe release from icebergs and ice shelves in a global ocean model. Large regional impacts are simulated, leading to only modest primary production and carbon export increases at the scale of the Southern Ocean. Large uncertainties are due to low observational constraints on modeling choices.
Cécile Dupouy, Robert Frouin, Marc Tedetti, Morgane Maillard, Martine Rodier, Fabien Lombard, Lionel Guidi, Marc Picheral, Jacques Neveux, Solange Duhamel, Bruno Charrière, and Richard Sempéré
Biogeosciences, 15, 5249–5269, https://doi.org/10.5194/bg-15-5249-2018, https://doi.org/10.5194/bg-15-5249-2018, 2018
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The marine diazotrophic Cyanobacterium Trichodesmium from the Underwater Vision Profiler 5 is concentrated in the first 50 m in the western tropical Pacific Ocean (18–22° S, 160° E–160° W). Its contribution to Tchl a and zeaxanthin is 60 % in the Melanesian archipelago and 30 % in the Fijian archipelago. Its impact on UV–VIS radiance is a peculiar signal in the green and yellow and possibly associated with backscattering or phycoerythrin fluorescence from Trichodesmium.
Guillaume Rousset, Florian De Boissieu, Christophe E. Menkes, Jérôme Lefèvre, Robert Frouin, Martine Rodier, Vincent Ridoux, Sophie Laran, Sophie Bonnet, and Cécile Dupouy
Biogeosciences, 15, 5203–5219, https://doi.org/10.5194/bg-15-5203-2018, https://doi.org/10.5194/bg-15-5203-2018, 2018
Dina Spungin, Natalia Belkin, Rachel A. Foster, Marcus Stenegren, Andrea Caputo, Mireille Pujo-Pay, Nathalie Leblond, Cécile Dupouy, Sophie Bonnet, and Ilana Berman-Frank
Biogeosciences, 15, 3893–3908, https://doi.org/10.5194/bg-15-3893-2018, https://doi.org/10.5194/bg-15-3893-2018, 2018
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The way marine organisms die can determine the fate of organic matter (OM) in the ocean. We investigated whether a form of auto-induced programmed cell death (PCD) influenced phytoplankton mortality and fate of OM. Our results from high biomass blooms of the cyanobacterium Trichodesmium show evidence for PCD and high production of sticky carbon material termed transparent exopolymeric particles (TEP) that facilitates cellular aggregation and enhances the vertical flux of OM to depth.
France Van Wambeke, Audrey Gimenez, Solange Duhamel, Cécile Dupouy, Dominique Lefevre, Mireille Pujo-Pay, and Thierry Moutin
Biogeosciences, 15, 2669–2689, https://doi.org/10.5194/bg-15-2669-2018, https://doi.org/10.5194/bg-15-2669-2018, 2018
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The western tropical South Pacific Ocean has recently been shown to be a hotspot for biological nitrogen fixation. In this study, we examined the horizontal and vertical distribution of heterotrophic prokaryotic production alongside photosynthetic rates, nitrogen fixation rates and phosphate turnover times across the western tropical South Pacific Ocean, in order to relate these fluxes to bottom–up controls (related to nitrogen, phosphate and labile C availability).
Raphaëlle Sauzède, Elodie Martinez, Orens Pasqueron de Fommervault, Antoine Poteau, Alexandre Mignot, Christophe Maes, Hervé Claustre, Julia Uitz, Keitapu Maamaatuaiahutapu, Martine Rodier, Catherine Schmechtig, and Victoire Laurent
Biogeosciences Discuss., https://doi.org/10.5194/bg-2017-541, https://doi.org/10.5194/bg-2017-541, 2018
Revised manuscript not accepted
Madhavan Girijakumari Keerthi, Matthieu Lengaigne, Marina Levy, Jerome Vialard, Vallivattathillam Parvathi, Clément de Boyer Montégut, Christian Ethé, Olivier Aumont, Iyyappan Suresh, Valiya Parambil Akhil, and Pillathu Moolayil Muraleedharan
Biogeosciences, 14, 3615–3632, https://doi.org/10.5194/bg-14-3615-2017, https://doi.org/10.5194/bg-14-3615-2017, 2017
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The northern Arabian Sea hosts a winter chlorophyll bloom, which exhibits strong interannual variability. The processes responsible for this interannual variation of the bloom are investigated using observations and a model. The interannual fluctuations of the winter bloom are largely related to the interannual mixed-layer depth (MLD) anomalies, which are driven by net heat flux anomalies. MLD controls the bloom amplitude through a modulation of nutrient turbulent fluxes into the mixed layer.
Guillaume Le Gland, Laurent Mémery, Olivier Aumont, and Laure Resplandy
Biogeosciences, 14, 3171–3189, https://doi.org/10.5194/bg-14-3171-2017, https://doi.org/10.5194/bg-14-3171-2017, 2017
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In this study, we computed the fluxes of radium-228 from the continental shelf to the open ocean by fitting a numerical model to observations. After determining appropriate model parameters (cost function and number of source regions), we found a lower and more precise global flux than previous estimates: 8.01–8.49×1023 atoms yr−1. This result can be used to assess nutrient and trace element fluxes to the open ocean, but we cannot identify specific pathways like submarine groundwater discharge.
James C. Orr, Raymond G. Najjar, Olivier Aumont, Laurent Bopp, John L. Bullister, Gokhan Danabasoglu, Scott C. Doney, John P. Dunne, Jean-Claude Dutay, Heather Graven, Stephen M. Griffies, Jasmin G. John, Fortunat Joos, Ingeborg Levin, Keith Lindsay, Richard J. Matear, Galen A. McKinley, Anne Mouchet, Andreas Oschlies, Anastasia Romanou, Reiner Schlitzer, Alessandro Tagliabue, Toste Tanhua, and Andrew Yool
Geosci. Model Dev., 10, 2169–2199, https://doi.org/10.5194/gmd-10-2169-2017, https://doi.org/10.5194/gmd-10-2169-2017, 2017
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The Ocean Model Intercomparison Project (OMIP) is a model comparison effort under Phase 6 of the Coupled Model Intercomparison Project (CMIP6). Its physical component is described elsewhere in this special issue. Here we describe its ocean biogeochemical component (OMIP-BGC), detailing simulation protocols and analysis diagnostics. Simulations focus on ocean carbon, other biogeochemical tracers, air-sea exchange of CO2 and related gases, and chemical tracers used to evaluate modeled circulation.
Olivier Aumont, Marco van Hulten, Matthieu Roy-Barman, Jean-Claude Dutay, Christian Éthé, and Marion Gehlen
Biogeosciences, 14, 2321–2341, https://doi.org/10.5194/bg-14-2321-2017, https://doi.org/10.5194/bg-14-2321-2017, 2017
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The marine biological carbon pump is dominated by the vertical transfer of particulate organic carbon (POC) from the surface ocean to its interior. In this study, we explore the impacts of a variable composition of this organic matter using a global ocean biogeochemical model. We show that accounting for a variable lability of POC increases POC concentrations by up to 2 orders of magnitude in the ocean's interior. Furthermore, the amount of carbon that reaches the sediments is twice as large.
Parvathi Vallivattathillam, Suresh Iyyappan, Matthieu Lengaigne, Christian Ethé, Jérôme Vialard, Marina Levy, Neetu Suresh, Olivier Aumont, Laure Resplandy, Hema Naik, and Wajih Naqvi
Biogeosciences, 14, 1541–1559, https://doi.org/10.5194/bg-14-1541-2017, https://doi.org/10.5194/bg-14-1541-2017, 2017
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During late boreal summer and fall, the west coast of India (WCI) experiences hypoxia, which turns into anoxia during some years. We analyze a coupled physical–biogeochemical simulation over the 1960–2012 period to investigate the physical processes influencing oxycline interannual variability off the WCI. We show that fall WCI oxycline fluctuations are strongly related to Indian Ocean Dipole (IOD), with positive IODs preventing anoxia, while negative IODs do not necessarily result in anoxia.
Eghbert Elvan Ampou, Ofri Johan, Christophe E. Menkes, Fernando Niño, Florence Birol, Sylvain Ouillon, and Serge Andréfouët
Biogeosciences, 14, 817–826, https://doi.org/10.5194/bg-14-817-2017, https://doi.org/10.5194/bg-14-817-2017, 2017
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The 2015–2016 El Niño was the strongest on record and has generated significant coral bleaching and mortality worldwide. In Indonesia, first signs of bleaching were reported in April 2016. However, we show that this El Niño has impacted Indonesian reefs since 2015 through a different process than temperature-induced bleaching. Another El Niño-induced process, sea level fall, is responsible for significant coral mortality on North Sulawesi shallow reefs, and probably throughout Indonesia.
Pierre-Amaël Auger, Thomas Gorgues, Eric Machu, Olivier Aumont, and Patrice Brehmer
Biogeosciences, 13, 6419–6440, https://doi.org/10.5194/bg-13-6419-2016, https://doi.org/10.5194/bg-13-6419-2016, 2016
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A box modeling approach reveals that horizontal currents drive the spatial distribution of phytoplankton biomass and primary production in the north-west African upwelling system. Alongshore (cross-shore) currents limit (enhance) cross-shore exchanges north (south) of Cape Blanc. Off Cape Blanc, a meridional convergence makes ambiguous the response of coastal nutrient upwelling to wind forcings, and high production is based upon nutrients and remineralized matter injected by horizontal currents.
Karine Leblanc, Véronique Cornet, Mathieu Caffin, Martine Rodier, Anne Desnues, Hugo Berthelot, Kendra Turk-Kubo, and Jules Heliou
Biogeosciences, 13, 5205–5219, https://doi.org/10.5194/bg-13-5205-2016, https://doi.org/10.5194/bg-13-5205-2016, 2016
Corinne Le Quéré, Erik T. Buitenhuis, Róisín Moriarty, Séverine Alvain, Olivier Aumont, Laurent Bopp, Sophie Chollet, Clare Enright, Daniel J. Franklin, Richard J. Geider, Sandy P. Harrison, Andrew G. Hirst, Stuart Larsen, Louis Legendre, Trevor Platt, I. Colin Prentice, Richard B. Rivkin, Sévrine Sailley, Shubha Sathyendranath, Nick Stephens, Meike Vogt, and Sergio M. Vallina
Biogeosciences, 13, 4111–4133, https://doi.org/10.5194/bg-13-4111-2016, https://doi.org/10.5194/bg-13-4111-2016, 2016
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We present a global biogeochemical model which incorporates ecosystem dynamics based on the representation of ten plankton functional types, and use the model to assess the relative roles of iron vs. grazing in determining phytoplankton biomass in the Southern Ocean. Our results suggest that observed low phytoplankton biomass in the Southern Ocean during summer is primarily explained by the dynamics of the Southern Ocean zooplankton community, despite iron limitation of phytoplankton growth.
Marc Tedetti, Lauriane Marie, Rüdiger Röttgers, Martine Rodier, France Van Wambeke, Sandra Helias, Mathieu Caffin, Véronique Cornet-Barthaux, and Cécile Dupouy
Biogeosciences, 13, 3283–3303, https://doi.org/10.5194/bg-13-3283-2016, https://doi.org/10.5194/bg-13-3283-2016, 2016
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In the framework of the VAHINE project, we investigated the spectral characteristics and the variability of dissolved and particulate chromophoric materials throughout a 23-day mesocosm experiment conducted in the south-west Pacific at the mouth of the New Caledonian coral lagoon. We found that the dynamics of CDOM and particulate matter absorption were strongly coupled with those of cyanobacteria Synechococcus spp. and bacterial production.
France Van Wambeke, Ulrike Pfreundt, Aude Barani, Hugo Berthelot, Thierry Moutin, Martine Rodier, Wolfgang R. Hess, and Sophie Bonnet
Biogeosciences, 13, 3187–3202, https://doi.org/10.5194/bg-13-3187-2016, https://doi.org/10.5194/bg-13-3187-2016, 2016
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The phytoplankton is at the base of the plankton food web in large parts of oceanic "deserts" such as the South Pacific Ocean, where nitrogen sources limit activity. Mesocosms were fertilized with phosphorus to stimulate diazotrophy (atmospheric N2 fixation). Mostly diazotroph-derived nitrogen fuelled the heterotrophic bacterial community through indirect processes generating dissolved organic matter and detritus, such as mortality, lysis and grazing of both diazotrophs and non-diazotrophs.
Roland Séférian, Marion Gehlen, Laurent Bopp, Laure Resplandy, James C. Orr, Olivier Marti, John P. Dunne, James R. Christian, Scott C. Doney, Tatiana Ilyina, Keith Lindsay, Paul R. Halloran, Christoph Heinze, Joachim Segschneider, Jerry Tjiputra, Olivier Aumont, and Anastasia Romanou
Geosci. Model Dev., 9, 1827–1851, https://doi.org/10.5194/gmd-9-1827-2016, https://doi.org/10.5194/gmd-9-1827-2016, 2016
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This paper explores how the large diversity in spin-up protocols used for ocean biogeochemistry in CMIP5 models contributed to inter-model differences in modeled fields. We show that a link between spin-up duration and skill-score metrics emerges from both individual IPSL-CM5A-LR's results and an ensemble of CMIP5 models. Our study suggests that differences in spin-up protocols constitute a source of inter-model uncertainty which would require more attention in future intercomparison exercises.
Sophie Bonnet, Thierry Moutin, Martine Rodier, Jean-Michel Grisoni, Francis Louis, Eric Folcher, Bertrand Bourgeois, Jean-Michel Boré, and Armelle Renaud
Biogeosciences, 13, 2803–2814, https://doi.org/10.5194/bg-13-2803-2016, https://doi.org/10.5194/bg-13-2803-2016, 2016
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e main goal of the VAHINE project was to study the fate of N2 fixation in the ocean. Three large-volume (~ 50 m3) mesocosms were deployed in a tropical oligotrophic ecosystem (the New Caledonia lagoon, south-eastern Pacific). This introductory paper describes the scientific objectives of the project in detail as well as the implementation plan: the mesocosm description and deployment, the selection of the study site, and the logistical and sampling strategy.
Roland Séférian, Christine Delire, Bertrand Decharme, Aurore Voldoire, David Salas y Melia, Matthieu Chevallier, David Saint-Martin, Olivier Aumont, Jean-Christophe Calvet, Dominique Carrer, Hervé Douville, Laurent Franchistéguy, Emilie Joetzjer, and Séphane Sénési
Geosci. Model Dev., 9, 1423–1453, https://doi.org/10.5194/gmd-9-1423-2016, https://doi.org/10.5194/gmd-9-1423-2016, 2016
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This paper presents the first IPCC-class Earth system model developed at Centre National de Recherches Météorologiques (CNRM-ESM1). We detail how the various carbon reservoirs were initialized and analyze the behavior of the carbon cycle and its prominent physical drivers, comparing model results to the most up-to-date climate and carbon cycle dataset over the latest decades.
O. Aumont, C. Ethé, A. Tagliabue, L. Bopp, and M. Gehlen
Geosci. Model Dev., 8, 2465–2513, https://doi.org/10.5194/gmd-8-2465-2015, https://doi.org/10.5194/gmd-8-2465-2015, 2015
K. B. Rodgers, O. Aumont, S. E. Mikaloff Fletcher, Y. Plancherel, L. Bopp, C. de Boyer Montégut, D. Iudicone, R. F. Keeling, G. Madec, and R. Wanninkhof
Biogeosciences, 11, 4077–4098, https://doi.org/10.5194/bg-11-4077-2014, https://doi.org/10.5194/bg-11-4077-2014, 2014
I. Borrione, O. Aumont, M. C. Nielsdóttir, and R. Schlitzer
Biogeosciences, 11, 1981–2001, https://doi.org/10.5194/bg-11-1981-2014, https://doi.org/10.5194/bg-11-1981-2014, 2014
M. Ishii, R. A. Feely, K. B. Rodgers, G.-H. Park, R. Wanninkhof, D. Sasano, H. Sugimoto, C. E. Cosca, S. Nakaoka, M. Telszewski, Y. Nojiri, S. E. Mikaloff Fletcher, Y. Niwa, P. K. Patra, V. Valsala, H. Nakano, I. Lima, S. C. Doney, E. T. Buitenhuis, O. Aumont, J. P. Dunne, A. Lenton, and T. Takahashi
Biogeosciences, 11, 709–734, https://doi.org/10.5194/bg-11-709-2014, https://doi.org/10.5194/bg-11-709-2014, 2014
J. C. Currie, M. Lengaigne, J. Vialard, D. M. Kaplan, O. Aumont, S. W. A. Naqvi, and O. Maury
Biogeosciences, 10, 6677–6698, https://doi.org/10.5194/bg-10-6677-2013, https://doi.org/10.5194/bg-10-6677-2013, 2013
Related subject area
Biogeochemistry: Modelling, Aquatic
Changes in Arctic Ocean plankton community structure and trophic dynamics on seasonal to interannual timescales
Global impact of benthic denitrification on marine N2 fixation and primary production simulated by a variable-stoichiometry Earth system model
Efficiency metrics for ocean alkalinity enhancement under responsive and prescribed atmosphere conditions
Killing the predator: impacts of highest-predator mortality on the global-ocean ecosystem structure
Hydrodynamic and biochemical impacts on the development of hypoxia in the Louisiana–Texas shelf – Part 1: roles of nutrient limitation and plankton community
Argon Saturation in a Suite of Coupled General Ocean Circulation Biogeochemical Models off Mauretania
Validation of the coupled physical–biogeochemical ocean model NEMO–SCOBI for the North Sea–Baltic Sea system
Investigating ecosystem connections in the shelf sea environment using complex networks
Seasonal and interannual variability of the pelagic ecosystem and of the organic carbon budget in the Rhodes Gyre (eastern Mediterranean): influence of winter mixing
How much do bacterial growth properties and biodegradable dissolved organic matter control water quality at low flow?
Methane emissions from Arctic landscapes during 2000–2015: an analysis with land and lake biogeochemistry models
Including filter-feeding gelatinous macrozooplankton in a global marine biogeochemical model: model–data comparison and impact on the ocean carbon cycle
Riverine impact on future projections of marine primary production and carbon uptake
Subsurface oxygen maximum in oligotrophic marine ecosystems: mapping the interaction between physical and biogeochemical processes
Quantifying biological carbon pump pathways with a data-constrained mechanistic model ensemble approach
Assessing the spatial and temporal variability of methylmercury biogeochemistry and bioaccumulation in the Mediterranean Sea with a coupled 3D model
Hydrodynamic and biochemical impacts on the development of hypoxia in the Louisiana–Texas shelf – Part 2: statistical modeling and hypoxia prediction
Modelling the effects of benthic fauna on carbon, nitrogen and phosphorus dynamics in the Baltic Sea
Improved prediction of dimethyl sulfide (DMS) distributions in the northeast subarctic Pacific using machine-learning algorithms
Nutrient transport and transformation in macrotidal estuaries of the French Atlantic coast: a modeling approach using the Carbon-Generic Estuarine Model
A modelling study of temporal and spatial pCO2 variability on the biologically active and temperature-dominated Scotian Shelf
Modeling the marine chromium cycle: new constraints on global-scale processes
New insights into large-scale trends of apparent organic matter reactivity in marine sediments and patterns of benthic carbon transformation
Evaluation of ocean dimethylsulfide concentration and emission in CMIP6 models
Zooplankton mortality effects on the plankton community of the northern Humboldt Current System: sensitivity of a regional biogeochemical model
Multi-compartment kinetic–allometric (MCKA) model of radionuclide bioaccumulation in marine fish
Impact of bottom trawling on sediment biogeochemistry: a modelling approach
Cyanobacteria blooms in the Baltic Sea: a review of models and facts
Arctic Ocean acidification over the 21st century co-driven by anthropogenic carbon increases and freshening in the CMIP6 model ensemble
Modeling silicate–nitrate–ammonium co-limitation of algal growth and the importance of bacterial remineralization based on an experimental Arctic coastal spring bloom culture study
Role of jellyfish in the plankton ecosystem revealed using a global ocean biogeochemical model
Extreme event waves in marine ecosystems: an application to Mediterranean Sea surface chlorophyll
Use of optical absorption indices to assess seasonal variability of dissolved organic matter in Amazon floodplain lakes
The role of sediment-induced light attenuation on primary production during Hurricane Gustav (2008)
Quantifying spatiotemporal variability in zooplankton dynamics in the Gulf of Mexico with a physical–biogeochemical model
One size fits all? Calibrating an ocean biogeochemistry model for different circulations
Assessing the temporal scale of deep-sea mining impacts on sediment biogeochemistry
Seasonal patterns of surface inorganic carbon system variables in the Gulf of Mexico inferred from a regional high-resolution ocean biogeochemical model
Oxygen dynamics and evaluation of the single-station diel oxygen model across contrasting geologies
Oceanic CO2 outgassing and biological production hotspots induced by pre-industrial river loads of nutrients and carbon in a global modeling approach
Global trends in marine nitrate N isotopes from observations and a neural network-based climatology
Merging bio-optical data from Biogeochemical-Argo floats and models in marine biogeochemistry
Model constraints on the anthropogenic carbon budget of the Arctic Ocean
Modeling oceanic nitrate and nitrite concentrations and isotopes using a 3-D inverse N cycle model
Biogeochemical response of the Mediterranean Sea to the transient SRES-A2 climate change scenario
Modelling the biogeochemical effects of heterotrophic and autotrophic N2 fixation in the Gulf of Aqaba (Israel), Red Sea
A perturbed biogeochemistry model ensemble evaluated against in situ and satellite observations
Diazotrophy as the main driver of the oligotrophy gradient in the western tropical South Pacific Ocean: results from a one-dimensional biogeochemical–physical coupled model
Causes of simulated long-term changes in phytoplankton biomass in the Baltic proper: a wavelet analysis
Long-term response of oceanic carbon uptake to global warming via physical and biological pumps
Gabriela Negrete-García, Jessica Y. Luo, Colleen M. Petrik, Manfredi Manizza, and Andrew D. Barton
Biogeosciences, 21, 4951–4973, https://doi.org/10.5194/bg-21-4951-2024, https://doi.org/10.5194/bg-21-4951-2024, 2024
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The Arctic Ocean experiences significant seasonal and year-to-year changes, impacting marine plankton populations. Using a plankton community model, we studied these effects on plankton communities and their influence on fish production. Our findings revealed earlier plankton blooms, shifts towards more carnivorous zooplankton, and increased fishery potential during summertime, especially in warmer years with less ice, highlighting the delicate balance of Arctic ecosystems.
Na Li, Christopher J. Somes, Angela Landolfi, Chia-Te Chien, Markus Pahlow, and Andreas Oschlies
Biogeosciences, 21, 4361–4380, https://doi.org/10.5194/bg-21-4361-2024, https://doi.org/10.5194/bg-21-4361-2024, 2024
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N is a crucial nutrient that limits phytoplankton growth in large ocean areas. The amount of oceanic N is governed by the balance of N2 fixation and denitrification. Here we incorporate benthic denitrification into an Earth system model with variable particulate stoichiometry. Our model compares better to the observed surface nutrient distributions, marine N2 fixation, and primary production. Benthic denitrification plays an important role in marine N and C cycling and hence the global climate.
Michael Dominik Tyka
EGUsphere, https://doi.org/10.5194/egusphere-2024-2150, https://doi.org/10.5194/egusphere-2024-2150, 2024
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Marine CO2 removal (mCDR) is a promising technology for removing legacy emissions from the atmosphere. Its indirect nature makes it difficult to assess experimentally; instead one relies heavily on simulation. Many past papers treated the atmosphere as non-responsive to the intervention studied. We show that even under these simplified assumptions, the increase in ocean CO2 inventory is equal to the equivalent quantity of direct CO2 removals occurring over time, in a realistic atmosphere.
David Talmy, Eric Carr, Harshana Rajakaruna, Selina Våge, and Anne Willem Omta
Biogeosciences, 21, 2493–2507, https://doi.org/10.5194/bg-21-2493-2024, https://doi.org/10.5194/bg-21-2493-2024, 2024
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The structure of plankton communities is central to global cycles of carbon, nitrogen, and other elements. This study explored the sensitivity of different assumptions about highest-predator mortality in ecosystem models with contrasting food web structures. In the context of environmental data, we find support for models assuming a density-dependent mortality of the highest predator, irrespective of assumed food web structure.
Yanda Ou and Z. George Xue
Biogeosciences, 21, 2385–2424, https://doi.org/10.5194/bg-21-2385-2024, https://doi.org/10.5194/bg-21-2385-2024, 2024
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Developed for the Gulf of Mexico (2006–2020), a 3D hydrodynamic–biogeochemical model validated against in situ data reveals the impact of nutrients and plankton diversity on dissolved oxygen dynamics. It highlights the role of physical processes, sediment oxygen consumption, and nutrient distribution in shaping bottom oxygen levels and hypoxia. The model underscores the importance of complex plankton interactions for understanding primary production and hypoxia evolution.
Heiner Dietze and Ulrike Löptien
EGUsphere, https://doi.org/10.5194/egusphere-2024-918, https://doi.org/10.5194/egusphere-2024-918, 2024
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We introduce argon saturation as a prognostic variable in a suite of coupled general ocean circulation biogeochemical models off Mauretania. Our results indicate that the effect of increasing the spatial horizontal model resolutions from 12 km to 1.5 km leads to changes comparable to other infamous spurious effects of state-of-the-art numerical advection numerics.
Itzel Ruvalcaba Baroni, Elin Almroth-Rosell, Lars Axell, Sam T. Fredriksson, Jenny Hieronymus, Magnus Hieronymus, Sandra-Esther Brunnabend, Matthias Gröger, Ivan Kuznetsov, Filippa Fransner, Robinson Hordoir, Saeed Falahat, and Lars Arneborg
Biogeosciences, 21, 2087–2132, https://doi.org/10.5194/bg-21-2087-2024, https://doi.org/10.5194/bg-21-2087-2024, 2024
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The health of the Baltic and North seas is threatened due to high anthropogenic pressure; thus, different methods to assess the status of these regions are urgently needed. Here, we validated a novel model simulating the ocean dynamics and biogeochemistry of the Baltic and North seas that can be used to create future climate and nutrient scenarios, contribute to European initiatives on de-eutrophication, and provide water quality advice and support on nutrient load reductions for both seas.
Ieuan Higgs, Jozef Skákala, Ross Bannister, Alberto Carrassi, and Stefano Ciavatta
Biogeosciences, 21, 731–746, https://doi.org/10.5194/bg-21-731-2024, https://doi.org/10.5194/bg-21-731-2024, 2024
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A complex network is a way of representing which parts of a system are connected to other parts. We have constructed a complex network based on an ecosystem–ocean model. From this, we can identify patterns in the structure and areas of similar behaviour. This can help to understand how natural, or human-made, changes will affect the shelf sea ecosystem, and it can be used in multiple future applications such as improving modelling, data assimilation, or machine learning.
Joelle Habib, Caroline Ulses, Claude Estournel, Milad Fakhri, Patrick Marsaleix, Mireille Pujo-Pay, Marine Fourrier, Laurent Coppola, Alexandre Mignot, Laurent Mortier, and Pascal Conan
Biogeosciences, 20, 3203–3228, https://doi.org/10.5194/bg-20-3203-2023, https://doi.org/10.5194/bg-20-3203-2023, 2023
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The Rhodes Gyre, eastern Mediterranean Sea, is the main Levantine Intermediate Water formation site. In this study, we use a 3D physical–biogeochemical model to investigate the seasonal and interannual variability of organic carbon dynamics in the gyre. Our results show its autotrophic nature and its high interannual variability, with enhanced primary production, downward exports, and onward exports to the surrounding regions during years marked by intense heat losses and deep mixed layers.
Masihullah Hasanyar, Thomas Romary, Shuaitao Wang, and Nicolas Flipo
Biogeosciences, 20, 1621–1633, https://doi.org/10.5194/bg-20-1621-2023, https://doi.org/10.5194/bg-20-1621-2023, 2023
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The results of this study indicate that biodegradable dissolved organic matter is responsible for oxygen depletion at low flow during summer seasons when heterotrophic bacterial activity is so intense. Therefore, the dissolved organic matter must be well measured in the water monitoring networks in order to have more accurate water quality models. It also advocates for high-frequency data collection for better quantification of the uncertainties related to organic matter.
Xiangyu Liu and Qianlai Zhuang
Biogeosciences, 20, 1181–1193, https://doi.org/10.5194/bg-20-1181-2023, https://doi.org/10.5194/bg-20-1181-2023, 2023
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We are among the first to quantify methane emissions from inland water system in the pan-Arctic. The total CH4 emissions are 36.46 Tg CH4 yr−1 during 2000–2015, of which wetlands and lakes were 21.69 Tg yr−1 and 14.76 Tg yr−1, respectively. By using two non-overlap area change datasets with land and lake models, our simulation avoids small lakes being counted twice as both lake and wetland, and it narrows the gap between two different methods used to quantify regional CH4 emissions.
Corentin Clerc, Laurent Bopp, Fabio Benedetti, Meike Vogt, and Olivier Aumont
Biogeosciences, 20, 869–895, https://doi.org/10.5194/bg-20-869-2023, https://doi.org/10.5194/bg-20-869-2023, 2023
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Gelatinous zooplankton play a key role in the ocean carbon cycle. In particular, pelagic tunicates, which feed on a wide size range of prey, produce rapidly sinking detritus. Thus, they efficiently transfer carbon from the surface to the depths. Consequently, we added these organisms to a marine biogeochemical model (PISCES-v2) and evaluated their impact on the global carbon cycle. We found that they contribute significantly to carbon export and that this contribution increases with depth.
Shuang Gao, Jörg Schwinger, Jerry Tjiputra, Ingo Bethke, Jens Hartmann, Emilio Mayorga, and Christoph Heinze
Biogeosciences, 20, 93–119, https://doi.org/10.5194/bg-20-93-2023, https://doi.org/10.5194/bg-20-93-2023, 2023
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We assess the impact of riverine nutrients and carbon (C) on projected marine primary production (PP) and C uptake using a fully coupled Earth system model. Riverine inputs alleviate nutrient limitation and thus lessen the projected PP decline by up to 0.7 Pg C yr−1 globally. The effect of increased riverine C may be larger than the effect of nutrient inputs in the future on the projected ocean C uptake, while in the historical period increased nutrient inputs are considered the largest driver.
Valeria Di Biagio, Stefano Salon, Laura Feudale, and Gianpiero Cossarini
Biogeosciences, 19, 5553–5574, https://doi.org/10.5194/bg-19-5553-2022, https://doi.org/10.5194/bg-19-5553-2022, 2022
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The amount of dissolved oxygen in the ocean is the result of interacting physical and biological processes. Oxygen vertical profiles show a subsurface maximum in a large part of the ocean. We used a numerical model to map this subsurface maximum in the Mediterranean Sea and to link local differences in its properties to the driving processes. This emerging feature can help the marine ecosystem functioning to be better understood, also under the impacts of climate change.
Michael R. Stukel, Moira Décima, and Michael R. Landry
Biogeosciences, 19, 3595–3624, https://doi.org/10.5194/bg-19-3595-2022, https://doi.org/10.5194/bg-19-3595-2022, 2022
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The biological carbon pump (BCP) transports carbon into the deep ocean, leading to long-term marine carbon sequestration. It is driven by many physical, chemical, and ecological processes. We developed a model of the BCP constrained using data from 11 cruises in 4 different ocean regions. Our results show that sinking particles and vertical mixing are more important than transport mediated by vertically migrating zooplankton. They also highlight the uncertainty in current estimates of the BCP.
Ginevra Rosati, Donata Canu, Paolo Lazzari, and Cosimo Solidoro
Biogeosciences, 19, 3663–3682, https://doi.org/10.5194/bg-19-3663-2022, https://doi.org/10.5194/bg-19-3663-2022, 2022
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Methylmercury (MeHg) is produced and bioaccumulated in marine food webs, posing concerns for human exposure through seafood consumption. We modeled and analyzed the fate of MeHg in the lower food web of the Mediterranean Sea. The modeled spatial–temporal distribution of plankton bioaccumulation differs from the distribution of MeHg in surface water. We also show that MeHg exposure concentrations in temperate waters can be lowered by winter convection, which is declining due to climate change.
Yanda Ou, Bin Li, and Z. George Xue
Biogeosciences, 19, 3575–3593, https://doi.org/10.5194/bg-19-3575-2022, https://doi.org/10.5194/bg-19-3575-2022, 2022
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Over the past decades, the Louisiana–Texas shelf has been suffering recurring hypoxia (dissolved oxygen < 2 mg L−1). We developed a novel prediction model using state-of-the-art statistical techniques based on physical and biogeochemical data provided by a numerical model. The model can capture both the magnitude and onset of the annual hypoxia events. This study also demonstrates that it is possible to use a global model forecast to predict regional ocean water quality.
Eva Ehrnsten, Oleg Pavlovitch Savchuk, and Bo Gustav Gustafsson
Biogeosciences, 19, 3337–3367, https://doi.org/10.5194/bg-19-3337-2022, https://doi.org/10.5194/bg-19-3337-2022, 2022
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We studied the effects of benthic fauna, animals living on or in the seafloor, on the biogeochemical cycles of carbon, nitrogen and phosphorus using a model of the Baltic Sea ecosystem. By eating and excreting, the animals transform a large part of organic matter sinking to the seafloor into inorganic forms, which fuel plankton blooms. Simultaneously, when they move around (bioturbate), phosphorus is bound in the sediments. This reduces nitrogen-fixing plankton blooms and oxygen depletion.
Brandon J. McNabb and Philippe D. Tortell
Biogeosciences, 19, 1705–1721, https://doi.org/10.5194/bg-19-1705-2022, https://doi.org/10.5194/bg-19-1705-2022, 2022
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The trace gas dimethyl sulfide (DMS) plays an important role in the ocean sulfur cycle and can also influence Earth’s climate. Our study used two statistical methods to predict surface ocean concentrations and rates of sea–air exchange of DMS in the northeast subarctic Pacific. Our results show improved predictive power over previous approaches and suggest that nutrient availability, light-dependent processes, and physical mixing may be important controls on DMS in this region.
Xi Wei, Josette Garnier, Vincent Thieu, Paul Passy, Romain Le Gendre, Gilles Billen, Maia Akopian, and Goulven Gildas Laruelle
Biogeosciences, 19, 931–955, https://doi.org/10.5194/bg-19-931-2022, https://doi.org/10.5194/bg-19-931-2022, 2022
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Estuaries are key reactive ecosystems along the land–ocean aquatic continuum and are often strongly impacted by anthropogenic activities. We calculated nutrient in and out fluxes by using a 1-D transient model for seven estuaries along the French Atlantic coast. Among these, large estuaries with high residence times showed higher retention rates than medium and small ones. All reveal coastal eutrophication due to the excess of diffused nitrogen from intensive agricultural river basins.
Krysten Rutherford, Katja Fennel, Dariia Atamanchuk, Douglas Wallace, and Helmuth Thomas
Biogeosciences, 18, 6271–6286, https://doi.org/10.5194/bg-18-6271-2021, https://doi.org/10.5194/bg-18-6271-2021, 2021
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Using a regional model of the northwestern North Atlantic shelves in combination with a surface water time series and repeat transect observations, we investigate surface CO2 variability on the Scotian Shelf. The study highlights a strong seasonal cycle in shelf-wide pCO2 and spatial variability throughout the summer months driven by physical events. The simulated net flux of CO2 on the Scotian Shelf is out of the ocean, deviating from the global air–sea CO2 flux trend in continental shelves.
Frerk Pöppelmeier, David J. Janssen, Samuel L. Jaccard, and Thomas F. Stocker
Biogeosciences, 18, 5447–5463, https://doi.org/10.5194/bg-18-5447-2021, https://doi.org/10.5194/bg-18-5447-2021, 2021
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Chromium (Cr) is a redox-sensitive element that holds promise as a tracer of ocean oxygenation and biological activity. We here implemented the oxidation states Cr(III) and Cr(VI) in the Bern3D model to investigate the processes that shape the global Cr distribution. We find a Cr ocean residence time of 5–8 kyr and that the benthic source dominates the tracer budget. Further, regional model–data mismatches suggest strong Cr removal in oxygen minimum zones and a spatially variable benthic source.
Felipe S. Freitas, Philip A. Pika, Sabine Kasten, Bo B. Jørgensen, Jens Rassmann, Christophe Rabouille, Shaun Thomas, Henrik Sass, Richard D. Pancost, and Sandra Arndt
Biogeosciences, 18, 4651–4679, https://doi.org/10.5194/bg-18-4651-2021, https://doi.org/10.5194/bg-18-4651-2021, 2021
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It remains challenging to fully understand what controls carbon burial in marine sediments globally. Thus, we use a model–data approach to identify patterns of organic matter reactivity at the seafloor across distinct environmental conditions. Our findings support the notion that organic matter reactivity is a dynamic ecosystem property and strongly influences biogeochemical cycling and exchange. Our results are essential to improve predictions of future changes in carbon cycling and climate.
Josué Bock, Martine Michou, Pierre Nabat, Manabu Abe, Jane P. Mulcahy, Dirk J. L. Olivié, Jörg Schwinger, Parvadha Suntharalingam, Jerry Tjiputra, Marco van Hulten, Michio Watanabe, Andrew Yool, and Roland Séférian
Biogeosciences, 18, 3823–3860, https://doi.org/10.5194/bg-18-3823-2021, https://doi.org/10.5194/bg-18-3823-2021, 2021
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In this study we analyse surface ocean dimethylsulfide (DMS) concentration and flux to the atmosphere from four CMIP6 Earth system models over the historical and ssp585 simulations.
Our analysis of contemporary (1980–2009) climatologies shows that models better reproduce observations in mid to high latitudes. The models disagree on the sign of the trend of the global DMS flux from 1980 onwards. The models agree on a positive trend of DMS over polar latitudes following sea-ice retreat dynamics.
Mariana Hill Cruz, Iris Kriest, Yonss Saranga José, Rainer Kiko, Helena Hauss, and Andreas Oschlies
Biogeosciences, 18, 2891–2916, https://doi.org/10.5194/bg-18-2891-2021, https://doi.org/10.5194/bg-18-2891-2021, 2021
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In this study we use a regional biogeochemical model of the eastern tropical South Pacific Ocean to implicitly simulate the effect that fluctuations in populations of small pelagic fish, such as anchovy and sardine, may have on the biogeochemistry of the northern Humboldt Current System. To do so, we vary the zooplankton mortality in the model, under the assumption that these fishes eat zooplankton. We also evaluate the model for the first time against mesozooplankton observations.
Roman Bezhenar, Kyeong Ok Kim, Vladimir Maderich, Govert de With, and Kyung Tae Jung
Biogeosciences, 18, 2591–2607, https://doi.org/10.5194/bg-18-2591-2021, https://doi.org/10.5194/bg-18-2591-2021, 2021
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A new approach to predicting the accumulation of radionuclides in fish was developed by taking into account heterogeneity of distribution of contamination in the organism and dependence of metabolic process rates on the fish mass. Predicted concentrations of radionuclides in fish agreed well with the laboratory and field measurements. The model with the defined generic parameters could be used in marine environments without local calibration, which is important for emergency decision support.
Emil De Borger, Justin Tiano, Ulrike Braeckman, Adriaan D. Rijnsdorp, and Karline Soetaert
Biogeosciences, 18, 2539–2557, https://doi.org/10.5194/bg-18-2539-2021, https://doi.org/10.5194/bg-18-2539-2021, 2021
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Bottom trawling alters benthic mineralization: the recycling of organic material (OM) to free nutrients. To better understand how this occurs, trawling events were added to a model of seafloor OM recycling. Results show that bottom trawling reduces OM and free nutrients in sediments through direct removal thereof and of fauna which transport OM to deeper sediment layers protected from fishing. Our results support temporospatial trawl restrictions to allow key sediment functions to recover.
Britta Munkes, Ulrike Löptien, and Heiner Dietze
Biogeosciences, 18, 2347–2378, https://doi.org/10.5194/bg-18-2347-2021, https://doi.org/10.5194/bg-18-2347-2021, 2021
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Cyanobacteria blooms can strongly aggravate eutrophication problems of water bodies. Their controls are, however, not comprehensively understood, which impedes effective management and protection plans. Here we review the current understanding of cyanobacteria blooms. Juxtaposition of respective field and laboratory studies with state-of-the-art mathematical models reveals substantial uncertainty associated with nutrient demands, grazing, and death of cyanobacteria.
Jens Terhaar, Olivier Torres, Timothée Bourgeois, and Lester Kwiatkowski
Biogeosciences, 18, 2221–2240, https://doi.org/10.5194/bg-18-2221-2021, https://doi.org/10.5194/bg-18-2221-2021, 2021
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The uptake of carbon, emitted as a result of human activities, results in ocean acidification. We analyse 21st-century projections of acidification in the Arctic Ocean, a region of particular vulnerability, using the latest generation of Earth system models. In this new generation of models there is a large decrease in the uncertainty associated with projections of Arctic Ocean acidification, with freshening playing a greater role in driving acidification than previously simulated.
Tobias R. Vonnahme, Martial Leroy, Silke Thoms, Dick van Oevelen, H. Rodger Harvey, Svein Kristiansen, Rolf Gradinger, Ulrike Dietrich, and Christoph Völker
Biogeosciences, 18, 1719–1747, https://doi.org/10.5194/bg-18-1719-2021, https://doi.org/10.5194/bg-18-1719-2021, 2021
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Diatoms are crucial for Arctic coastal spring blooms, and their growth is controlled by nutrients and light. At the end of the bloom, inorganic nitrogen or silicon can be limiting, but nitrogen can be regenerated by bacteria, extending the algal growth phase. Modeling these multi-nutrient dynamics and the role of bacteria is challenging yet crucial for accurate modeling. We recreated spring bloom dynamics in a cultivation experiment and developed a representative dynamic model.
Rebecca M. Wright, Corinne Le Quéré, Erik Buitenhuis, Sophie Pitois, and Mark J. Gibbons
Biogeosciences, 18, 1291–1320, https://doi.org/10.5194/bg-18-1291-2021, https://doi.org/10.5194/bg-18-1291-2021, 2021
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Jellyfish have been included in a global ocean biogeochemical model for the first time. The global mean jellyfish biomass in the model is within the observational range. Jellyfish are found to play an important role in the plankton ecosystem, influencing community structure, spatiotemporal dynamics and biomass. The model raises questions about the sensitivity of the zooplankton community to jellyfish mortality and the interactions between macrozooplankton and jellyfish.
Valeria Di Biagio, Gianpiero Cossarini, Stefano Salon, and Cosimo Solidoro
Biogeosciences, 17, 5967–5988, https://doi.org/10.5194/bg-17-5967-2020, https://doi.org/10.5194/bg-17-5967-2020, 2020
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Events that influence the functioning of the Earth’s ecosystems are of interest in relation to a changing climate. We propose a method to identify and characterise
wavesof extreme events affecting marine ecosystems for multi-week periods over wide areas. Our method can be applied to suitable ecosystem variables and has been used to describe different kinds of extreme event waves of phytoplankton chlorophyll in the Mediterranean Sea, by analysing the output from a high-resolution model.
Maria Paula da Silva, Lino A. Sander de Carvalho, Evlyn Novo, Daniel S. F. Jorge, and Claudio C. F. Barbosa
Biogeosciences, 17, 5355–5364, https://doi.org/10.5194/bg-17-5355-2020, https://doi.org/10.5194/bg-17-5355-2020, 2020
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In this study, we analyze the seasonal changes in the dissolved organic matter (DOM) quality (based on its optical properties) in four Amazon floodplain lakes. DOM plays a fundamental role in surface water chemistry, controlling metal bioavailability and mobility, and nutrient cycling. The model proposed in our paper highlights the potential to study DOM quality at a wider spatial scale, which may help to better understand the persistence and fate of DOM in the ecosystem.
Zhengchen Zang, Z. George Xue, Kehui Xu, Samuel J. Bentley, Qin Chen, Eurico J. D'Sa, Le Zhang, and Yanda Ou
Biogeosciences, 17, 5043–5055, https://doi.org/10.5194/bg-17-5043-2020, https://doi.org/10.5194/bg-17-5043-2020, 2020
Taylor A. Shropshire, Steven L. Morey, Eric P. Chassignet, Alexandra Bozec, Victoria J. Coles, Michael R. Landry, Rasmus Swalethorp, Glenn Zapfe, and Michael R. Stukel
Biogeosciences, 17, 3385–3407, https://doi.org/10.5194/bg-17-3385-2020, https://doi.org/10.5194/bg-17-3385-2020, 2020
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Zooplankton are the smallest animals in the ocean and important food for fish. Despite their importance, zooplankton have been relatively undersampled. To better understand the zooplankton community in the Gulf of Mexico (GoM), we developed a model to simulate their dynamics. We found that heterotrophic protists are important for supporting mesozooplankton, which are the primary prey of larval fish. The model developed in this study has the potential to improve fisheries management in the GoM.
Iris Kriest, Paul Kähler, Wolfgang Koeve, Karin Kvale, Volkmar Sauerland, and Andreas Oschlies
Biogeosciences, 17, 3057–3082, https://doi.org/10.5194/bg-17-3057-2020, https://doi.org/10.5194/bg-17-3057-2020, 2020
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Constants of global biogeochemical ocean models are often tuned
by handto match observations of nutrients or oxygen. We investigate the effect of this tuning by optimising six constants of a global biogeochemical model, simulated in five different offline circulations. Optimal values for three constants adjust to distinct features of the circulation applied and can afterwards be swapped among the circulations, without losing too much of the model's fit to observed quantities.
Laura Haffert, Matthias Haeckel, Henko de Stigter, and Felix Janssen
Biogeosciences, 17, 2767–2789, https://doi.org/10.5194/bg-17-2767-2020, https://doi.org/10.5194/bg-17-2767-2020, 2020
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Deep-sea mining for polymetallic nodules is expected to have severe environmental impacts. Through prognostic modelling, this study aims to provide a holistic assessment of the biogeochemical recovery after a disturbance event. It was found that the recovery strongly depends on the impact type; e.g. complete removal of the surface sediment reduces seafloor nutrient fluxes over centuries.
Fabian A. Gomez, Rik Wanninkhof, Leticia Barbero, Sang-Ki Lee, and Frank J. Hernandez Jr.
Biogeosciences, 17, 1685–1700, https://doi.org/10.5194/bg-17-1685-2020, https://doi.org/10.5194/bg-17-1685-2020, 2020
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We use a numerical model to infer annual changes of surface carbon chemistry in the Gulf of Mexico (GoM). The main seasonality drivers of partial pressure of carbon dioxide and aragonite saturation state from the model are temperature and river runoff. The GoM basin is a carbon sink in winter–spring and carbon source in summer–fall, but uptake prevails near the Mississippi Delta year-round due to high biological production. Our model results show good correspondence with observational studies.
Simon J. Parker
Biogeosciences, 17, 305–315, https://doi.org/10.5194/bg-17-305-2020, https://doi.org/10.5194/bg-17-305-2020, 2020
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Dissolved oxygen (DO) models typically assume constant ecosystem respiration over the course of a single day. Using a data-driven approach, this research examines this assumption in four streams across two (hydro-)geological types (Chalk and Greensand). Despite hydrogeological equivalence in terms of baseflow index for each hydrogeological pairing, model suitability differed within, rather than across, geology types. This corresponded with associated differences in timings of DO minima.
Fabrice Lacroix, Tatiana Ilyina, and Jens Hartmann
Biogeosciences, 17, 55–88, https://doi.org/10.5194/bg-17-55-2020, https://doi.org/10.5194/bg-17-55-2020, 2020
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Contributions of rivers to the oceanic cycling of carbon have been poorly represented in global models until now. Here, we assess the long–term implications of preindustrial riverine loads in the ocean in a novel framework which estimates the loads through a hierarchy of weathering and land–ocean export models. We investigate their impacts for the oceanic biological production and air–sea carbon flux. Finally, we assess the potential incorporation of the framework in an Earth system model.
Patrick A. Rafter, Aaron Bagnell, Dario Marconi, and Timothy DeVries
Biogeosciences, 16, 2617–2633, https://doi.org/10.5194/bg-16-2617-2019, https://doi.org/10.5194/bg-16-2617-2019, 2019
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The N isotopic composition of nitrate (
nitrate δ15N) is a useful tracer of ocean N cycling and many other ocean processes. Here, we use a global compilation of marine nitrate δ15N as an input, training, and validating dataset for an artificial neural network (a.k.a.,
machine learning) and examine basin-scale trends in marine nitrate δ15N from the surface to the seafloor.
Elena Terzić, Paolo Lazzari, Emanuele Organelli, Cosimo Solidoro, Stefano Salon, Fabrizio D'Ortenzio, and Pascal Conan
Biogeosciences, 16, 2527–2542, https://doi.org/10.5194/bg-16-2527-2019, https://doi.org/10.5194/bg-16-2527-2019, 2019
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Measuring ecosystem properties in the ocean is a hard business. Recent availability of data from Biogeochemical-Argo floats can help make this task easier. Numerical models can integrate these new data in a coherent picture and can be used to investigate the functioning of ecosystem processes. Our new approach merges experimental information and model capabilities to quantitatively demonstrate the importance of light and water vertical mixing for algae dynamics in the Mediterranean Sea.
Jens Terhaar, James C. Orr, Marion Gehlen, Christian Ethé, and Laurent Bopp
Biogeosciences, 16, 2343–2367, https://doi.org/10.5194/bg-16-2343-2019, https://doi.org/10.5194/bg-16-2343-2019, 2019
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A budget of anthropogenic carbon in the Arctic Ocean, the main driver of open-ocean acidification, was constructed for the first time using a high-resolution ocean model. The budget reveals that anthropogenic carbon enters the Arctic Ocean mainly by lateral transport; the air–sea flux plays a minor role. Coarser-resolution versions of the same model, typical of earth system models, store less anthropogenic carbon in the Arctic Ocean and thus underestimate ocean acidification in the Arctic Ocean.
Taylor S. Martin, François Primeau, and Karen L. Casciotti
Biogeosciences, 16, 347–367, https://doi.org/10.5194/bg-16-347-2019, https://doi.org/10.5194/bg-16-347-2019, 2019
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Nitrite is a key intermediate in many nitrogen (N) cycling processes in the ocean, particularly in areas with low oxygen that are hotspots for N loss. We have created a 3-D global N cycle model with nitrite as a tracer. Stable isotopes of N are also included in the model and we are able to model the isotope fractionation associated with each N cycling process. Our model accurately represents N concentrations and isotope distributions in the ocean.
Camille Richon, Jean-Claude Dutay, Laurent Bopp, Briac Le Vu, James C. Orr, Samuel Somot, and François Dulac
Biogeosciences, 16, 135–165, https://doi.org/10.5194/bg-16-135-2019, https://doi.org/10.5194/bg-16-135-2019, 2019
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We evaluate the effects of climate change and biogeochemical forcing evolution on the nutrient and plankton cycles of the Mediterranean Sea for the first time. We use a high-resolution coupled physical and biogeochemical model and perform 120-year transient simulations. The results indicate that changes in external nutrient fluxes and climate change may have synergistic or antagonistic effects on nutrient concentrations, depending on the region and the scenario.
Angela M. Kuhn, Katja Fennel, and Ilana Berman-Frank
Biogeosciences, 15, 7379–7401, https://doi.org/10.5194/bg-15-7379-2018, https://doi.org/10.5194/bg-15-7379-2018, 2018
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Recent studies demonstrate that marine N2 fixation can be carried out without light. However, direct measurements of N2 fixation in dark environments are relatively scarce. This study uses a model that represents biogeochemical cycles at a deep-ocean location in the Gulf of Aqaba (Red Sea). Different model versions are used to test assumptions about N2 fixers. Relaxing light limitation for marine N2 fixers improved the similarity between model results and observations of deep nitrate and oxygen.
Prima Anugerahanti, Shovonlal Roy, and Keith Haines
Biogeosciences, 15, 6685–6711, https://doi.org/10.5194/bg-15-6685-2018, https://doi.org/10.5194/bg-15-6685-2018, 2018
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Minor changes in the biogeochemical model equations lead to major dynamical changes. We assessed this structural sensitivity for the MEDUSA biogeochemical model on chlorophyll and nitrogen concentrations at five oceanographic stations over 10 years, using 1-D ensembles generated by combining different process equations. The ensemble performed better than the default model in most of the stations, suggesting that our approach is useful for generating a probabilistic biogeochemical ensemble model.
Audrey Gimenez, Melika Baklouti, Thibaut Wagener, and Thierry Moutin
Biogeosciences, 15, 6573–6589, https://doi.org/10.5194/bg-15-6573-2018, https://doi.org/10.5194/bg-15-6573-2018, 2018
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During the OUTPACE cruise conducted in the oligotrophic to ultra-oligotrophic region of the western tropical South Pacific, two contrasted regions were sampled in terms of N2 fixation rates, primary production rates and nutrient availability. The aim of this work was to investigate the role of N2 fixation in the differences observed between the two contrasted areas by comparing two simulations only differing by the presence or not of N2 fixers using a 1-D biogeochemical–physical coupled model.
Jenny Hieronymus, Kari Eilola, Magnus Hieronymus, H. E. Markus Meier, Sofia Saraiva, and Bengt Karlson
Biogeosciences, 15, 5113–5129, https://doi.org/10.5194/bg-15-5113-2018, https://doi.org/10.5194/bg-15-5113-2018, 2018
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This paper investigates how phytoplankton concentrations in the Baltic Sea co-vary with nutrient concentrations and other key variables on inter-annual timescales in a model integration over the years 1850–2008. The study area is not only affected by climate change; it has also been subjected to greatly increased nutrient loads due to extensive use of agricultural fertilizers. The results indicate the largest inter-annual coherence of phytoplankton with the limiting nutrient.
Akitomo Yamamoto, Ayako Abe-Ouchi, and Yasuhiro Yamanaka
Biogeosciences, 15, 4163–4180, https://doi.org/10.5194/bg-15-4163-2018, https://doi.org/10.5194/bg-15-4163-2018, 2018
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Millennial-scale changes in oceanic CO2 uptake due to global warming are simulated by a GCM and offline biogeochemical model. Sensitivity studies show that decreases in oceanic CO2 uptake are mainly caused by a weaker biological pump and seawater warming. Enhanced CO2 uptake due to weaker equatorial upwelling cancels out reduced CO2 uptake due to weaker AMOC and AABW formation. Thus, circulation change plays only a small direct role in reduction of CO2 uptake due to global warming.
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Short summary
N2 fixation is recognized as one of the major sources of nitrogen in the ocean. Thus, N2 fixation sustains a significant part of the primary production (PP) by supplying the most common limiting nutrient for phytoplankton growth. From numerical simulations, the local maximums of Trichodesmium biomass in the Pacific are found around islands, explained by the iron fluxes from island sediments. We assessed that 15 % of the PP may be due to Trichodesmium in the low-nutrient, low-chlorophyll areas.
N2 fixation is recognized as one of the major sources of nitrogen in the ocean. Thus, N2...
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