Articles | Volume 15, issue 3
https://doi.org/10.5194/bg-15-693-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-15-693-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
02 Feb 2018
Research article |
| 02 Feb 2018
| 02 Feb 2018
Variations and determinants of carbon content in plants: a global synthesis
Department of Ecology, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
Feng He
College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
College of Life Sciences, Capital Normal University, Beijing 100048, China
Dongting Zou
Department of Ecology, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
Zhengbing Yan
Department of Ecology, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
Yulong Yang
College of Earth and Environmental Sciences, Lanzhou University, Lanzhou 730000, China
Tiancheng Zhou
College of Earth and Environmental Sciences, Lanzhou University, Lanzhou 730000, China
Kaiyue Huang
College of Earth and Environmental Sciences, Lanzhou University, Lanzhou 730000, China
Haihua Shen
State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
Jingyun Fang
CORRESPONDING AUTHOR
Department of Ecology, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
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Quantifying China's forest biomass C pool is important in understanding C cycling in forests. However, most of studies on forest biomass C pool were limited to the period of 2004–2008. Here, we used a biomass expansion factor method to estimate C pool from 1977 to 2018. The results suggest that afforestation practices, forest growth, and environmental changes were the main drivers of increased C sink. Thus, this study provided an essential basis for achieving China's C neutrality target.
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Quantifying China's forest biomass C pool is important in understanding C cycling in forests. However, most of studies on forest biomass C pool were limited to the period of 2004–2008. Here, we used a biomass expansion factor method to estimate C pool from 1977 to 2018. The results suggest that afforestation practices, forest growth, and environmental changes were the main drivers of increased C sink. Thus, this study provided an essential basis for achieving China's C neutrality target.
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Impact of chemical treatments on the molecular and stable carbon isotopic composition of sporomorphs
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Maria G. Digernes, Yasemin V. Bodur, Martí Amargant-Arumí, Oliver Müller, Jeffrey A. Hawkes, Stephen G. Kohler, Ulrike Dietrich, Marit Reigstad, and Maria L. Paulsen
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Organic matter and microbial fluid analysis are rarely considered in the geothermal industry and research. However, they can have a significant impact on the efficiency of geothermal energy production. We found a high diversity of organic compound compositions in our samples and were able to differentiate them with respect to different sources (e.g. artificial and biogenic). Furthermore, the microbial diversity undergoes significant changes within the flow path of a geothermal power plant.
Colleen L. Hoffman, Patrick J. Monreal, Justine B. Albers, Alastair J. M. Lough, Alyson E. Santoro, Travis Mellett, Kristen N. Buck, Alessandro Tagliabue, Maeve C. Lohan, Joseph A. Resing, and Randelle M. Bundy
Biogeosciences, 21, 5233–5246, https://doi.org/10.5194/bg-21-5233-2024, https://doi.org/10.5194/bg-21-5233-2024, 2024
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Hydrothermally derived iron can be transported kilometers away from deep-sea vents, representing a significant flux of vital micronutrients to the ocean. However, the mechanisms that support the stabilization of dissolved iron remain elusive. Using electrochemical, spectrometry, and genomic methods, we demonstrated that strong ligands exert an important control on iron in plumes, and high-affinity iron-binding siderophores were identified in several hydrothermal plume samples for the first time.
Chiara Santinelli, Silvia Valsecchi, Simona Retelletti Brogi, Giancarlo Bachi, Giovanni Checcucci, Mirco Guerrazzi, Elisa Camatti, Stefano Caserini, Arianna Azzellino, and Daniela Basso
Biogeosciences, 21, 5131–5141, https://doi.org/10.5194/bg-21-5131-2024, https://doi.org/10.5194/bg-21-5131-2024, 2024
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Ocean liming is a technique proposed to mitigate ocean acidification. Every action we take has an impact on the environment and the effects on the invisible world are often overlooked. With this study, we show that lime addition impacts the dynamics of dissolved organic matter, one of the largest reservoirs of carbon on Earth, representing the main source of energy for marine microbes. Further studies to assess the impacts on marine ecosystems are therefore crucial before taking any action.
Mak A. Saito, Jaclyn K. Saunders, Matthew R. McIlvin, Erin M. Bertrand, John A. Breier, Margaret Mars Brisbin, Sophie M. Colston, Jaimee R. Compton, Tim J. Griffin, W. Judson Hervey, Robert L. Hettich, Pratik D. Jagtap, Michael Janech, Rod Johnson, Rick Keil, Hugo Kleikamp, Dagmar Leary, Lennart Martens, J. Scott P. McCain, Eli Moore, Subina Mehta, Dawn M. Moran, Jaqui Neibauer, Benjamin A. Neely, Michael V. Jakuba, Jim Johnson, Megan Duffy, Gerhard J. Herndl, Richard Giannone, Ryan Mueller, Brook L. Nunn, Martin Pabst, Samantha Peters, Andrew Rajczewski, Elden Rowland, Brian Searle, Tim Van Den Bossche, Gary J. Vora, Jacob R. Waldbauer, Haiyan Zheng, and Zihao Zhao
Biogeosciences, 21, 4889–4908, https://doi.org/10.5194/bg-21-4889-2024, https://doi.org/10.5194/bg-21-4889-2024, 2024
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The ability to assess the functional capabilities of microbes in the environment is of increasing interest. Metaproteomics, the ability to measure proteins across microbial populations, has been increasing in capability and popularity in recent years. Here, an international team of scientists conducted an intercomparison study using samples collected from the North Atlantic Ocean and observed consistency in the peptides and proteins identified, their functions, and their taxonomic origins.
Devika Varma, Laura Villanueva, Nicole J. Bale, Pierre Offre, Gert-Jan Reichart, and Stefan Schouten
Biogeosciences, 21, 4875–4888, https://doi.org/10.5194/bg-21-4875-2024, https://doi.org/10.5194/bg-21-4875-2024, 2024
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Archaeal hydroxylated tetraether lipids are increasingly used as temperature indicators in marine settings, but the factors influencing their distribution are still unclear. Analyzing membrane lipids of two thaumarchaeotal strains showed that the growth phase of the cultures does not affect the lipid distribution, but growth temperature profoundly affects the degree of cyclization of these lipids. Also, the abundance of these lipids is species-specific and is not influenced by temperature.
William Kew, Allison Myers-Pigg, Christine H. Chang, Sean M. Colby, Josie Eder, Malak M. Tfaily, Jeffrey Hawkes, Rosalie K. Chu, and James C. Stegen
Biogeosciences, 21, 4665–4679, https://doi.org/10.5194/bg-21-4665-2024, https://doi.org/10.5194/bg-21-4665-2024, 2024
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Natural organic matter (NOM) is often studied via Fourier transform mass spectrometry (FTMS), which identifies organic molecules as mass spectra peaks. The intensity of peaks is data that is often discarded due to technical concerns. We review the theory behind these concerns and show they are supported empirically. However, simulations show that ecological analyses of NOM data that include FTMS peak intensities are often valid. This opens a path for robust use of FTMS peak intensities for NOM.
Evan R. Collins, Troy M. Ferland, Isla S. Castañeda, R. Bernhart Owen, Tim K. Lowenstein, Andrew S. Cohen, Robin W. Renaut, Molly D. O'Beirne, and Josef P. Werne
EGUsphere, https://doi.org/10.5194/egusphere-2024-3006, https://doi.org/10.5194/egusphere-2024-3006, 2024
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Archaeal molecular fossils (tetraethers) have been used around the globe to track changes in climate. Little is known about archaeal response to environmental change in soda lakes, especially lakes influenced by hydrothermal inputs. For the first time in Lake Magadi, we show tetraethers tracking abrupt changes in methane and non-methane producers due to hydrothermal inputs to the lake. This study provides insight into the role of hydrothermal water sources and methane production in soda lakes.
Adam J. Fagan, Tatsuro Tanioka, Alyse A. Larkin, Jenna A. Lee, Nathan S. Garcia, and Adam C. Martiny
Biogeosciences, 21, 4239–4250, https://doi.org/10.5194/bg-21-4239-2024, https://doi.org/10.5194/bg-21-4239-2024, 2024
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Sebastian I. Cantarero, Edgart Flores, Harry Allbrook, Paulina Aguayo, Cristian A. Vargas, John E. Tamanaha, J. Bentley C. Scholz, Lennart T. Bach, Carolin R. Löscher, Ulf Riebesell, Balaji Rajagopalan, Nadia Dildar, and Julio Sepúlveda
Biogeosciences, 21, 3927–3958, https://doi.org/10.5194/bg-21-3927-2024, https://doi.org/10.5194/bg-21-3927-2024, 2024
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Our study explores lipid remodeling in response to environmental stress, specifically how cell membrane chemistry changes. We focus on intact polar lipids in a phytoplankton community exposed to diverse stressors in a mesocosm experiment. The observed remodeling indicates acyl chain recycling for energy storage in intact polar lipids during stress, reallocating resources based on varying growth conditions. This understanding is essential to grasp the system's impact on cellular pools.
Mengke Wang, Peng Zhang, Huishan Li, Guisen Deng, Deliang Kong, Sifang Kong, and Junjian Wang
Biogeosciences, 21, 2691–2704, https://doi.org/10.5194/bg-21-2691-2024, https://doi.org/10.5194/bg-21-2691-2024, 2024
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We developed and applied complementary analyses to characterize molecular-level carbon traits for water-grown and soil-grown fine roots. The adaptive strategy of developing more labile carbon in water-grown roots accelerated root decomposition and counteracted the decelerated effects of anoxia on decomposition, highlighting an indirect effect of environmental change on belowground carbon cycling.
Zhe-Xuan Zhang, Edith Parlanti, Christelle Anquetil, Jérôme Morelle, Anniet M. Laverman, Alexandre Thibault, Elisa Bou, and Arnaud Huguet
Biogeosciences, 21, 2227–2252, https://doi.org/10.5194/bg-21-2227-2024, https://doi.org/10.5194/bg-21-2227-2024, 2024
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Bacterial tetraethers have important implications for palaeoclimate reconstruction. However, fundamental understanding of how these lipids are transformed from land to sea and which environmental factors influence their distributions is lacking. Here, we investigate the sources of brGDGTs and brGMGTs and the factors controlling their distributions in a large dataset (n=237). We propose a novel proxy (RIX) to trace riverine runoff, which is applicable in modern systems and in paleorecord.
Youcheng Bai, Marie-Alexandrine Sicre, Jian Ren, Vincent Klein, Haiyan Jin, and Jianfang Chen
Biogeosciences, 21, 689–709, https://doi.org/10.5194/bg-21-689-2024, https://doi.org/10.5194/bg-21-689-2024, 2024
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Algal biomarkers were used to assess sea ice and pelagic algal production across the western Arctic Ocean with changing sea-ice conditions. They show three distinct areas along with a marked latitudinal gradient of sea ice over pelagic algal production in surface sediments that are reflected by the H-Print index. Our data also show that efficient grazing consumption accounted for the dramatic decrease of diatom-derived biomarkers in sediments compared to that of particulate matter.
Hanxiao Wang, Zhifei Liu, Jiaying Li, Baozhi Lin, Yulong Zhao, Xiaodong Zhang, Junyuan Cao, Jingwen Zhang, Hongzhe Song, and Wenzhuo Wang
Biogeosciences, 20, 5109–5123, https://doi.org/10.5194/bg-20-5109-2023, https://doi.org/10.5194/bg-20-5109-2023, 2023
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The sinking of zooplankton fecal pellets is a key process in the marine biological carbon pump. This study presents carbon export of four shapes of fecal pellets from two time-series sediment traps in the South China Sea. The results show that the sinking fate of fecal pellets is regulated by marine primary productivity, deep-dwelling zooplankton community, and deep-sea currents in the tropical marginal sea, thus providing a new perspective for exploring the carbon cycle in the world ocean.
Rebecca J. Chmiel, Riss M. Kell, Deepa Rao, Dawn M. Moran, Giacomo R. DiTullio, and Mak A. Saito
Biogeosciences, 20, 3997–4027, https://doi.org/10.5194/bg-20-3997-2023, https://doi.org/10.5194/bg-20-3997-2023, 2023
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Cobalt is an important micronutrient for plankton, yet it is often scarce throughout the oceans. A 2017/2018 expedition to coastal Antarctica, including regions of the Amundsen Sea and the Ross Sea, discovered lower concentrations of cobalt compared to two past expeditions in 2005 and 2006, particularly for the type of cobalt preferred as a nutrient by phytoplankton. This loss may be due to changing inputs of other nutrients, causing higher uptake of cobalt by plankton over the last decade.
Emily B. Graham, Hyun-Seob Song, Samantha Grieger, Vanessa A. Garayburu-Caruso, James C. Stegen, Kevin D. Bladon, and Allison N. Myers-Pigg
Biogeosciences, 20, 3449–3457, https://doi.org/10.5194/bg-20-3449-2023, https://doi.org/10.5194/bg-20-3449-2023, 2023
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Intensifying wildfires are increasing pyrogenic organic matter (PyOM) production and its impact on water quality. Recent work indicates that PyOM may have a greater impact on aquatic biogeochemistry than previously assumed, driven by higher bioavailability. We provide a full assessment of the potential bioavailability of PyOM across its chemical spectrum. We indicate that PyOM can be actively transformed within the river corridor and, therefore, may be a growing source of riverine C emissions.
Nora Richter, Ellen C. Hopmans, Danica Mitrović, Pedro M. Raposeiro, Vítor Gonçalves, Ana C. Costa, Linda A. Amaral-Zettler, Laura Villanueva, and Darci Rush
Biogeosciences, 20, 2065–2098, https://doi.org/10.5194/bg-20-2065-2023, https://doi.org/10.5194/bg-20-2065-2023, 2023
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Bacteriohopanepolyols (BHPs) are a diverse class of lipids produced by bacteria across a wide range of environments. This study characterizes the diversity of BHPs in lakes and coastal lagoons in the Azores Archipelago, as well as a co-culture enriched for methanotrophs. We highlight the potential of BHPs as taxonomic markers for bacteria associated with certain ecological niches, which can be preserved in sedimentary records.
Andrea Scheibe, Carlos A. Sierra, and Marie Spohn
Biogeosciences, 20, 827–838, https://doi.org/10.5194/bg-20-827-2023, https://doi.org/10.5194/bg-20-827-2023, 2023
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We explored carbon cycling in soils in three climate zones in Chile down to a depth of 6 m, using carbon isotopes. Our results show that microbial activity several meters below the soil surface is mostly fueled by recently fixed carbon and that strong decomposition of soil organic matter only occurs in the upper decimeters of the soils. The study shows that different layers of the critical zone are tightly connected and that processes in the deep soil depend on recently fixed carbon.
Melissa Sophia Schwab, Hannah Gies, Chantal Valérie Freymond, Maarten Lupker, Negar Haghipour, and Timothy Ian Eglinton
Biogeosciences, 19, 5591–5616, https://doi.org/10.5194/bg-19-5591-2022, https://doi.org/10.5194/bg-19-5591-2022, 2022
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The majority of river studies focus on headwater or floodplain systems, while often neglecting intermediate river segments. Our study on the subalpine Sihl River bridges the gap between streams and lowlands and demonstrates that moderately steep river segments are areas of significant instream alterations, modulating the export of organic carbon over short distances.
Lisa Noll, Shasha Zhang, Qing Zheng, Yuntao Hu, Florian Hofhansl, and Wolfgang Wanek
Biogeosciences, 19, 5419–5433, https://doi.org/10.5194/bg-19-5419-2022, https://doi.org/10.5194/bg-19-5419-2022, 2022
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Cleavage of proteins to smaller nitrogen compounds allows microorganisms and plants to exploit the largest nitrogen reservoir in soils and is considered the bottleneck in soil organic nitrogen cycling. Results from soils covering a European transect show that protein turnover is constrained by soil geochemistry, shifts in climate and associated alterations in soil weathering and should be considered as a driver of soil nitrogen availability with repercussions on carbon cycle processes.
Muhammed Fatih Sert, Helge Niemann, Eoghan P. Reeves, Mats A. Granskog, Kevin P. Hand, Timo Kekäläinen, Janne Jänis, Pamela E. Rossel, Bénédicte Ferré, Anna Silyakova, and Friederike Gründger
Biogeosciences, 19, 2101–2120, https://doi.org/10.5194/bg-19-2101-2022, https://doi.org/10.5194/bg-19-2101-2022, 2022
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We investigate organic matter composition in the Arctic Ocean water column. We collected seawater samples from sea ice to deep waters at six vertical profiles near an active hydrothermal vent and its plume. In comparison to seawater, we found that the organic matter in waters directly affected by the hydrothermal plume had different chemical composition. We suggest that hydrothermal processes may influence the organic matter distribution in the deep ocean.
Charlotte Haugk, Loeka L. Jongejans, Kai Mangelsdorf, Matthias Fuchs, Olga Ogneva, Juri Palmtag, Gesine Mollenhauer, Paul J. Mann, P. Paul Overduin, Guido Grosse, Tina Sanders, Robyn E. Tuerena, Lutz Schirrmeister, Sebastian Wetterich, Alexander Kizyakov, Cornelia Karger, and Jens Strauss
Biogeosciences, 19, 2079–2094, https://doi.org/10.5194/bg-19-2079-2022, https://doi.org/10.5194/bg-19-2079-2022, 2022
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Buried animal and plant remains (carbon) from the last ice age were freeze-locked in permafrost. At an extremely fast eroding permafrost cliff in the Lena Delta (Siberia), we found this formerly frozen carbon well preserved. Our results show that ongoing degradation releases substantial amounts of this carbon, making it available for future carbon emissions. This mobilisation at the studied cliff and also similarly eroding sites bear the potential to affect rivers and oceans negatively.
Aleksandar I. Goranov, Andrew S. Wozniak, Kyle W. Bostick, Andrew R. Zimmerman, Siddhartha Mitra, and Patrick G. Hatcher
Biogeosciences, 19, 1491–1514, https://doi.org/10.5194/bg-19-1491-2022, https://doi.org/10.5194/bg-19-1491-2022, 2022
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Wildfire-derived molecules are ubiquitous in the aquatic environment, but their biological fate remains understudied. We have evaluated the compositional changes that occur to wildfire-derived molecules after incubation with soil microbes. We observe a significant degradation but also a production of numerous new labile molecules. Our results indicate that wildfire-derived molecules can be broken down and the carbon and nitrogen therein can be incorporated into microbial food webs.
Edgart Flores, Sebastian I. Cantarero, Paula Ruiz-Fernández, Nadia Dildar, Matthias Zabel, Osvaldo Ulloa, and Julio Sepúlveda
Biogeosciences, 19, 1395–1420, https://doi.org/10.5194/bg-19-1395-2022, https://doi.org/10.5194/bg-19-1395-2022, 2022
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In this study, we investigate the chemical diversity and abundance of microbial lipids as markers of organic matter sources in the deepest points of the Atacama Trench sediments and compare them to similar lipid stocks in shallower surface sediments and in the overlying water column. We evaluate possible organic matter provenance and some potential chemical adaptations of the in situ microbial community to the extreme conditions of high hydrostatic pressure in hadal realm.
Birgit Gaye, Niko Lahajnar, Natalie Harms, Sophie Anna Luise Paul, Tim Rixen, and Kay-Christian Emeis
Biogeosciences, 19, 807–830, https://doi.org/10.5194/bg-19-807-2022, https://doi.org/10.5194/bg-19-807-2022, 2022
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Amino acids were analyzed in a large number of samples of particulate and dissolved organic matter from coastal regions and the open ocean. A statistical analysis produced two new biogeochemical indicators. An indicator of sinking particle and sediment degradation (SDI) traces the degradation of organic matter from the surface waters into the sediments. A second indicator shows the residence time of suspended matter in the ocean (RTI).
Zoë R. van Kemenade, Laura Villanueva, Ellen C. Hopmans, Peter Kraal, Harry J. Witte, Jaap S. Sinninghe Damsté, and Darci Rush
Biogeosciences, 19, 201–221, https://doi.org/10.5194/bg-19-201-2022, https://doi.org/10.5194/bg-19-201-2022, 2022
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Anaerobic ammonium oxidation (anammox) is an important nitrogen-removal process in the ocean. We assess the distribution of bacteriohopanetetrol-x (BHT-x), used to trace past anammox, along a redox gradient in the water column of the Benguela upwelling system. BHT-x / BHT ratios of >0.18 correspond to the presence of living anammox bacteria and oxygen levels <50 μmol L−1. This allows for a more robust application of BHT-x to trace past marine anammox and deoxygenation in dynamic marine systems.
Jia-Jang Hung, Ching-Han Tung, Zong-Ying Lin, Yuh-ling Lee Chen, Shao-Hung Peng, Yen-Huei Lin, and Li-Shan Tsai
Biogeosciences, 18, 5141–5162, https://doi.org/10.5194/bg-18-5141-2021, https://doi.org/10.5194/bg-18-5141-2021, 2021
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We report measured active and passive fluxes and their controlling mechanisms in the northern South China Sea (NSCS). The total fluxes were higher than most reports in open oceans, indicating the significance of NSCS in atmospheric CO2 uptake and in storing that CO2 in the ocean’s interior. Winter cooling and extreme events enhanced nutrient availability and elevated fluxes. Global warming may have profound impacts on reducing ocean’s uptake and storage of CO2 in subtropical–tropical oceans.
Jens Daniel Müller, Bernd Schneider, Ulf Gräwe, Peer Fietzek, Marcus Bo Wallin, Anna Rutgersson, Norbert Wasmund, Siegfried Krüger, and Gregor Rehder
Biogeosciences, 18, 4889–4917, https://doi.org/10.5194/bg-18-4889-2021, https://doi.org/10.5194/bg-18-4889-2021, 2021
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Based on profiling pCO2 measurements from a field campaign, we quantify the biomass production of a cyanobacteria bloom in the Baltic Sea, the export of which would foster deep water deoxygenation. We further demonstrate how this biomass production can be accurately reconstructed from long-term surface measurements made on cargo vessels in combination with modelled temperature profiles. This approach enables a better understanding of a severe concern for the Baltic’s good environmental status.
Alexander Braun, Marina Spona-Friedl, Maria Avramov, Martin Elsner, Federico Baltar, Thomas Reinthaler, Gerhard J. Herndl, and Christian Griebler
Biogeosciences, 18, 3689–3700, https://doi.org/10.5194/bg-18-3689-2021, https://doi.org/10.5194/bg-18-3689-2021, 2021
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It is known that CO2 fixation by photoautotrophic organisms is the major sink from the atmosphere. While biologists are aware that CO2 fixation also occurs in heterotrophic organisms, this route of inorganic carbon, and its quantitative role, is hardly recognized in biogeochemistry. We demonstrate that a considerable amount of CO2 is fixed annually through anaplerotic reactions in heterotrophic organisms, and a significant quantity of inorganic carbon is temporally sequestered in biomass.
Jonathan H. Raberg, David J. Harning, Sarah E. Crump, Greg de Wet, Aria Blumm, Sebastian Kopf, Áslaug Geirsdóttir, Gifford H. Miller, and Julio Sepúlveda
Biogeosciences, 18, 3579–3603, https://doi.org/10.5194/bg-18-3579-2021, https://doi.org/10.5194/bg-18-3579-2021, 2021
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BrGDGT lipids are a proxy for temperature in lake sediments, but other parameters like pH can influence them, and seasonality can affect the temperatures they record. We find a warm-season bias at 43 new high-latitude sites. We also present a new method that deconvolves the effects of temperature, pH, and conductivity and generate global calibrations for these variables. Our study provides new paleoclimate tools, insight into brGDGTs at the biochemical level, and a new method for future study.
Charlotte L. Spencer-Jones, Erin L. McClymont, Nicole J. Bale, Ellen C. Hopmans, Stefan Schouten, Juliane Müller, E. Povl Abrahamsen, Claire Allen, Torsten Bickert, Claus-Dieter Hillenbrand, Elaine Mawbey, Victoria Peck, Aleksandra Svalova, and James A. Smith
Biogeosciences, 18, 3485–3504, https://doi.org/10.5194/bg-18-3485-2021, https://doi.org/10.5194/bg-18-3485-2021, 2021
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Long-term ocean temperature records are needed to fully understand the impact of West Antarctic Ice Sheet collapse. Glycerol dialkyl glycerol tetraethers (GDGTs) are powerful tools for reconstructing ocean temperature but can be difficult to apply to the Southern Ocean. Our results show active GDGT synthesis in relatively warm depths of the ocean. This research improves the application of GDGT palaeoceanographic proxies in the Southern Ocean.
Alec W. Armstrong, Leanne Powers, and Michael Gonsior
Biogeosciences, 18, 3367–3390, https://doi.org/10.5194/bg-18-3367-2021, https://doi.org/10.5194/bg-18-3367-2021, 2021
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Living things decay into organic matter, which can dissolve into water (like tea brewing). Tea receives its color by absorbing light. Similarly, this material absorbs light, which can then cause chemical reactions that change it. By measuring changes in these optical properties, we found that materials from some places are more sensitive to light than others. Comparing sensitivity to light helps us understand where these materials come from and what happens as they move through water.
Ben J. Fisher, Johan C. Faust, Oliver W. Moore, Caroline L. Peacock, and Christian März
Biogeosciences, 18, 3409–3419, https://doi.org/10.5194/bg-18-3409-2021, https://doi.org/10.5194/bg-18-3409-2021, 2021
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Organic carbon can be protected from microbial degradation in marine sediments through association with iron minerals on 1000-year timescales. Despite the importance of this carbon sink, our spatial and temporal understanding of iron-bound organic carbon interactions globally is poor. Here we show that caution must be applied when comparing quantification of iron-bound organic carbon extracted by different methods as the extraction strength and method specificity can be highly variable.
Mark A. Stevenson, Suzanne McGowan, Emma J. Pearson, George E. A. Swann, Melanie J. Leng, Vivienne J. Jones, Joseph J. Bailey, Xianyu Huang, and Erika Whiteford
Biogeosciences, 18, 2465–2485, https://doi.org/10.5194/bg-18-2465-2021, https://doi.org/10.5194/bg-18-2465-2021, 2021
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We link detailed stable isotope and biomarker analyses from the catchments of three Arctic upland lakes on Disko Island (West Greenland) to a recent dated sediment core to understand how carbon cycling has changed over the past ~500 years. We find that the carbon deposited in sediments in these upland lakes is predominately sourced from in-lake production due to the catchment's limited terrestrial vegetation and elevation and that recent increases in algal production link with climate change.
Nadine T. Smit, Laura Villanueva, Darci Rush, Fausto Grassa, Caitlyn R. Witkowski, Mira Holzheimer, Adriaan J. Minnaard, Jaap S. Sinninghe Damsté, and Stefan Schouten
Biogeosciences, 18, 1463–1479, https://doi.org/10.5194/bg-18-1463-2021, https://doi.org/10.5194/bg-18-1463-2021, 2021
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Soils from an everlasting fire (gas seep) in Sicily, Italy, reveal high relative abundances of novel uncultivated mycobacteria and unique 13C-depleted mycocerosic acids (multi-methyl branched fatty acids) close to the main gas seep. Our results imply that mycocerosic acids in combination with their depleted δ13C values offer a new biomarker tool to study the role of soil mycobacteria as hydrocarbon consumers in the modern and past global carbon cycle.
Marcus P. S. Badger
Biogeosciences, 18, 1149–1160, https://doi.org/10.5194/bg-18-1149-2021, https://doi.org/10.5194/bg-18-1149-2021, 2021
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Reconstructing ancient atmospheric CO2 is an important aim of palaeoclimate science in order to understand the Earth's climate system. One method, the alkenone proxy based on molecular fossils of coccolithophores, has been recently shown to be ineffective at low-to-moderate CO2 levels. In this paper I show that this is likely due to changes in the biogeochemistry of the coccolithophores when there is low carbon availability, but for much of the Cenozoic the alkenone proxy should have utility.
Loes G. J. van Bree, Francien Peterse, Allix J. Baxter, Wannes De Crop, Sigrid van Grinsven, Laura Villanueva, Dirk Verschuren, and Jaap S. Sinninghe Damsté
Biogeosciences, 17, 5443–5463, https://doi.org/10.5194/bg-17-5443-2020, https://doi.org/10.5194/bg-17-5443-2020, 2020
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Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are used as a paleothermometer based on their temperature dependence in global soils, but aquatic production complicates their use in lakes. BrGDGTs in the water column of Lake Chala, East Africa, respond to oxygen conditions and mixing. Changes in their signal can be linked to bacterial community composition rather than membrane adaptation to changing conditions. Their integrated signal in the sediment reflects mean air temperature.
Alexandra N. Loginova, Andrew W. Dale, Frédéric A. C. Le Moigne, Sören Thomsen, Stefan Sommer, David Clemens, Klaus Wallmann, and Anja Engel
Biogeosciences, 17, 4663–4679, https://doi.org/10.5194/bg-17-4663-2020, https://doi.org/10.5194/bg-17-4663-2020, 2020
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We measured dissolved organic carbon (DOC), nitrogen (DON) and matter (DOM) optical properties in pore waters and near-bottom waters of the eastern tropical South Pacific off Peru. The difference between diffusion-driven and net fluxes of DOC and DON and qualitative changes in DOM optical properties suggested active microbial utilisation of the released DOM at the sediment–water interface. Our results suggest that the sediment release of DOM contributes to microbial processes in the area.
Gerard J. M. Versteegh, Alexander J. P. Houben, and Karin A. F. Zonneveld
Biogeosciences, 17, 3545–3561, https://doi.org/10.5194/bg-17-3545-2020, https://doi.org/10.5194/bg-17-3545-2020, 2020
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Anoxic sediments mostly contain much more organic matter than oxic ones, and therefore organic matter in anoxic settings is often considered to be preserved better than in oxic settings. However, through the analysis of the same fossil dinoflagellate cyst species from both oxic and anoxic settings, we show that at a molecular level the preservation in the oxic sediments may be better since in the anoxic setting the cyst macromolecule has been altered by postdepositional modification.
Jingjing Guo, Miriam Glendell, Jeroen Meersmans, Frédérique Kirkels, Jack J. Middelburg, and Francien Peterse
Biogeosciences, 17, 3183–3201, https://doi.org/10.5194/bg-17-3183-2020, https://doi.org/10.5194/bg-17-3183-2020, 2020
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The fluxes of soil organic carbon (OC) transport from land to sea are poorly constrained, mostly due to the lack of a specific tracer for soil OC. Here we evaluate the use of specific molecules derived from soil bacteria as a tracer for soil OC in a small river catchment. We find that the initial soil signal is lost upon entering the aquatic environment. However, the local environmental history of the catchment is reflected by these molecules in the lake sediments that act as their sink.
Zhuo-Yi Zhu, Joanne Oakes, Bradley Eyre, Youyou Hao, Edwin Sien Aun Sia, Shan Jiang, Moritz Müller, and Jing Zhang
Biogeosciences, 17, 2473–2485, https://doi.org/10.5194/bg-17-2473-2020, https://doi.org/10.5194/bg-17-2473-2020, 2020
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Samples were collected in August 2016 in the Rajang River and its estuary, with tropical forest in the river basin and peatland in the estuary. Organic matter composition was influenced by transportation in the river basin, whereas peatland added clear biodegraded parts to the fluvial organic matter, which implies modification of the initial lability and/or starting points in the subsequent degradation and alternation processes after the organic matter enters the sea.
Wenjie Xiao, Yasong Wang, Yongsheng Liu, Xi Zhang, Linlin Shi, and Yunping Xu
Biogeosciences, 17, 2135–2148, https://doi.org/10.5194/bg-17-2135-2020, https://doi.org/10.5194/bg-17-2135-2020, 2020
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The hadal zone (6–11 km depth) is the least explored habitat on Earth. We studied microbial branched glycerol dialkyl glycerol tetraethers (brGDGTs) in the Challenger Deep, Mariana Trench. One unique feature is the strong predominance of 6-methyl brGDGT, which likely reflects an adaption of brGDGT-producing bacteria to alkaline seawater and low temperature. BrGDGTs, with elemental and isotopic data, suggest an autochthonous product for brGDGT. A new approach is proposed for brGDGT sourcing.
Yuge Bai, Edisson Subdiaga, Stefan B. Haderlein, Heike Knicker, and Andreas Kappler
Biogeosciences, 17, 683–698, https://doi.org/10.5194/bg-17-683-2020, https://doi.org/10.5194/bg-17-683-2020, 2020
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Biogeochemical processes of SOM are key for greenhouse gas emission and water quality. We extracted SOM by water or by NaOH–HCl under oxic–anoxic conditions. Chemical and anoxic extractions lead to higher SOM electron exchange capacities, resulting in stimulation of microbial Fe(III) reduction. Therefore, aqueous pH-neutral SOM extracts should be used to reflect environmental SOM redox processes, and artifacts of chemical extractions need to be considered when evaluating SOM redox processes.
Yan Shen, Volker Thiel, Pablo Suarez-Gonzalez, Sebastiaan W. Rampen, and Joachim Reitner
Biogeosciences, 17, 649–666, https://doi.org/10.5194/bg-17-649-2020, https://doi.org/10.5194/bg-17-649-2020, 2020
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Today, sterols are widespread in plants, animals, and fungi but are almost absent in the oldest rocks. Microbial mats, representing the earliest complex ecosystems on Earth, were omnipresent in Precambrian marine environments and may have degraded the sterols at that time. Here we analyze the distribution of sterols through a microbial mat. This provides insight into how variations in biological and nonbiological factors affect the preservation of sterols in modern and ancient microbial mats.
Cited articles
Adler, E.: Lignin chemistry – past, present and future, Wood Sci. Technol., 11, 169–218, 1977.
Alriksson, A. and Eriksson, H. M.: Variations in mineral nutrient and C distribution in the soil and vegetation compartments of five temperate tree species in NE Sweden, Forest Ecol. Manag., 108, 261–273, 1998.
Armstrong, D., Cook, H., and Thomas, B.: The lignin and cellulose contents of certain grassland species at different stages of growth, J. Agr. Sci., 40, 93–99, 1950.
Barros, R. S., Finger, F. L., and Magalhães, M. M.: Changes in non-structural carbohydrates in developing fruit of Myrciaria jaboticaba, Sci. Hortic., 66, 209–215, 1996.
Bert, D. and Danjon, F.: Carbon concentration variations in the roots, stem and crown of mature Pinus pinaster (Ait.), Forest Ecol. Manag., 222, 279–295, 2006.
Cao, Y. and Chen, Y. M.: Biomass, Carbon and nutrient storage in a 30-year-old Chinese cork oak (Quercus Variabilis) forest on the south slope of the qinling mountains, China, Forests, 6, 1239–1255, 2015.
De Vries, W., Reinds, G. J., Gundersen, P., and Sterba, H.: The impact of nitrogen deposition on carbon sequestration in European forests and forest soils, Glob. Change Biol., 12, 1151–1173, 2006.
Dietze, M. C., Sala, A., Carbone, M. S., Czimczik, C. I., Mantooth, J. A., Richardson, A. D., and Vargas, R.: Nonstructural carbon in woody plants, Annu. Rev. Plant Biol., 65, 667–687, 2014.
Dixon, R. K., Solomon, A. M., Brown, S., Houghton, R. A., Trexier, M. C., and Wisniewski, J.: Carbon pools and flux of global forest ecosystems, Science, 263, 185–190, 1994.
Elias, M. and Potvin, C.: Assessing inter-and intra-specific variation in trunk carbon concentration for 32 neotropical tree species, Can. J. Forest Res., 33, 1039–1045, 2003.
Fang, S. Z., Li, H. L., Sun, Q. X., and Chen, L. B.: Biomass production and carbon stocks in poplar-crop intercropping systems: a case study in northwestern Jiangsu, China, Agroforest Syst., 79, 213–222, 2010.
Fyllas, N. M., Patiño, S., Baker, T. R., Bielefeld Nardoto, G., Martinelli, L. A., Quesada, C. A., Paiva, R., Schwarz, M., Horna, V., Mercado, L. M., Santos, A., Arroyo, L., Jiménez, E. M., Luizão, F. J., Neill, D. A., Silva, N., Prieto, A., Rudas, A., Silviera, M., Vieira, I. C. G., Lopez-Gonzalez, G., Malhi, Y., Phillips, O. L., and Lloyd, J.: Basin-wide variations in foliar properties of Amazonian forest: phylogeny, soils and climate, Biogeosciences, 6, 2677–2708, https://doi.org/10.5194/bg-6-2677-2009, 2009.
Han, W. H., Fang, J. Y., Reich, P. B., Ian Woodward, F., and Wang, Z. H.: Biogeography and variability of eleven mineral elements in plant leaves across gradients of climate, soil and plant functional type in China, Ecol. Lett., 14, 788–796, 2011.
He, J. S., Fang, J. Y., Wang, Z. H., Guo, D. L., Flynn, D. F., and Geng, Z.: Stoichiometry and large-scale patterns of leaf carbon and nitrogen in the grassland biomes of China, Oecologia, 149, 115–122, 2006.
Hessen, D. O., Ågren, G. I., Anderson, T. R., Elser, J. J., and de Ruiter, P. C.: Carbon sequestration in ecosystems: the role of stoichiometry, Ecology, 85, 1179–1192, 2004.
Hijmans, R. J., Cameron, S. E., Parra, J. L., Jones, P. G., and Jarvis, A.: Very high resolution interpolated climate surfaces for global land areas, Int. J. Climatol., 25, 1965–1978, 2005.
IPCC: Forest lands, Intergovernmental Panel on Climate Change Guidelines for National Greenhouse Gas Inventories, Institute for Global Environmental Strategies (IGES), Hayama, Japan, 2006.
Johnson, J. M. F., Barbour, N. W., and Weyers, S. L.: Chemical composition of crop biomass impacts its decomposition, Soil Sci. Soc. Am. J., 71, 155–162, 2007.
Jones, D. A. and O'Hara, K. L.: Carbon density in managed coast redwood stands: implications for forest carbon estimation, Forestry, 85, 99–110, 2012.
Jones, D. A. and O'Hara, K. L.: The influence of preparation method on measured carbon fractions in tree tissues, Tree Physiol., 36, 1177–1189, https://doi.org/10.1093/treephys/tpw051, 2016.
Kattge, J., Diaz, S., Lavorel, S., et al.: TRY–a global database of plant traits, Glob. Change Biol., 17, 2905–2935, 2011.
Keith, H., Mackey, B. G., and Lindenmayer, D. B.: Re-evaluation of forest biomass carbon stocks and lessons from the world's most carbon-dense forests, P. Natl. Acad. Sci. USA, 106, 11635–11640, 2009.
Lamlom, S. H. and Savidge, R. A.: A reassessment of carbon content in wood: variation within and between 41 North American species, Biomass Bioenerg., 25, 381–388, 2003.
Lewis, S. L., Lopez-Gonzalez, G., Sonke, B., Affum-Baffoe, K., Baker, T. R., Ojo, L. O., Phillips, O. L., Reitsma, J. M., White, L., Comiskey, J. A., Djuikouo, M. N., Ewango, C. E. N., Feldpausch, T. R., Hamilton, A. C., Gloor, M., Hart, T., Hladik, A., Lloyd, J., Lovett, J. C., Makana, J. R., Malhi, Y., Mbago, F. M., Ndangalasi, H. J., Peacock, J., Peh, K. S. H., Sheil, D., Sunderland, T., Swaine, M. D., Taplin, J., Taylor, D., Thomas, S. C., Votere, R., and Woll, H.: Increasing carbon storage in intact African tropical forests, Nature, 457, 1003–1006, 2009.
Martin, A. R. and Thomas, S. C.: A reassessment of carbon content in tropical trees, Plos One, 6, e23533, https://doi.org/10.1371/journal.pone.0023533, 2011.
Martin, A. R., Thomas, S. C., and Zhao, Y.: Size-dependent changes in wood chemical traits: a comparison of neotropical saplings and large trees, AOB Plants, 5, plt039, https://doi.org/10.1093/aobpla/plt039, 2013.
Martin, A. R., Gezahegn, S., and Thomas, S. C.: Variation in carbon and nitrogen concentration among major woody tissue types in temperate trees, Can. J. Forest Res., 45, 744–757, 2015.
Martínez-Vilalta, J., Sala, A., Asensio, D., Galiano, L., Hoch, G., Palacio, S., Piper, F. I., and Lloret, F.: Dynamics of non-structural carbohydrates in terrestrial plants: a global synthesis, Ecol. Monogr., 86, 495–516, 2016.
Niinemets, Ü., Ellsworth, D. S., Lukjanova, A., and Tobias, M.: Dependence of needle architecture and chemical composition on canopy light availability in three North American Pinus species with contrasting needle length, Tree Physiol., 22, 747–761, 2002.
Northup, B., Zitzer, S., Archer, S., McMurtry, C., and Boutton, T.: Above-ground biomass and carbon and nitrogen content of woody species in a subtropical thornscrub parkland, J. Arid Environ., 62, 23–43, 2005.
Ordoñez, J. C., Bodegom, P. M. V., Witte, J. P. M., Wright, I. J., Reich, P. B., and Aerts, R.: A global study of relationships between leaf traits, climate and soil measures of nutrient fertility, Global Ecol. Biogeogr., 18, 137–149, 2009.
Pettersen, R. C.: The chemical composition of wood, in: The Chemistry of Wood. Advances in Chemistry Series 207, edited by: Rowel, R. M., ACS Publications, Washington, DC, USA, 57–126, 1984.
Poorter, H. and Bergkotte, M.: Chemical composition of 24 wild species differing in relative growth rate, Plant Cell Environ., 15, 221–229, 1992.
R Core Team: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria, https://www.R-project.org/, 2016.
Reich, P. B.: Global biogeography of plant chemistry: filling in the blanks, New Phytol., 168, 263–266, 2005.
Reich, P. B. and Oleksyn, J.: Global patterns of plant leaf N and P in relation to temperature and latitude, P. Natl. Acad. Sci. USA, 101, 11001–11006, 2004.
Rodrigues, D. P., Hamacher, C., Estrada, G. C. D., and Soares, M. L. G.: Variability of carbon content in mangrove species: Effect of species, compartments and tidal frequency, Aquat. Bot., 120, 346–351, 2015.
Rouwenhorst, R. J., Jzn, J. F., Scheffers, W. A., and van Dijken, J. P.: Determination of protein concentration by total organic carbon analysis, J. Biochem. Bioph. Meth., 22, 119–128, 1991.
Saatchi, S. S., Harris, N. L., Brown, S., Lefsky, M., Mitchard, E. T., Salas, W., Zutta, B. R., Buermann, W., Lewis, S. L., and Hagen, S.: Benchmark map of forest carbon stocks in tropical regions across three continents, P. Natl. Acad. Sci. USA, 108, 9899–9904, 2011.
Savidge, R.: Biochemistry of seasonal cambial growth and wood formation-an overview of the challenges, in: Cell and molecular biology of wood formation. Experimental Biology Reviews, edited by: Savidge, R., Barnett, J. R., and Napier, R., BIOS Scientific Publishers Ltd., Oxford, UK, 1–30, 2000.
Schlesinger, W. H. and Bernhardt, E. S.: Chapter 5 – The Biosphere: The Carbon Cycle of Terrestrial Ecosystems, in: Biogeochemistry: An Analysis of Global Change, 3rd Edition, Academic Press, Boston, MA, USA, 135–171, 2013.
Thomas, S. C. and Martin, A. R.: Carbon content of tree tissues: a synthesis, Forests, 3, 332–352, 2012.
Tian, D., Yan, Z. B., Niklas K. J., Han, W. X., Kattge, J., Reich, P. B., Luo, Y. K., Chen, Y. H., Tang, Z. Y., Hu, H. F., Wright, I. J., Schmid, B., and Fang, J. Y.: 2017. Global leaf nitrogen and phosphorus stoichiometry and their scaling exponent, Natl. Sci. Rev., nwx142, https://doi.org/10.1093/nsr/nwx142, 2017.
Tolunay, D.: Carbon concentrations of tree components, forest floor and understorey in young Pinus sylvestris stands in north-western Turkey, Scand. J. Forest Res., 24, 394–402, 2009.
Uri, V., Varik, M., Aosaar, J., Kanal, A., Kukumägi, M., and Lõhmus, K.: Biomass production and carbon sequestration in a fertile silver birch (Betula pendula Roth) forest chronosequence, Forest Ecol. Manag., 267, 117–126, 2012.
Whittaker, R. H.: Communities and Ecosystems, 2nd Revise Edition, MacMillan Publishing Co., New York, USA, 1975.
Wu, H. L., Xiang, W. H, Fang, X., Lei, P. F., Ouyang, S., and Deng, X. W.: Tree functional types simplify forest carbon stock estimates induced by carbon concentration variations among species in a subtropical area, Sci. Rep., 7, 4992, https://doi.org/10.1038/s41598-017-05306-z, 2017.
Yao, F. Y,, Chen, Y. H, Yan, Z. B, Li, P., Han, W. X, and Fang, J. Y.: Biogeographic patterns of structural traits and C : N : P stoichiometry of tree twigs in China's forests, Plos One, 10, e0116391, https://doi.org/10.1371/journal.pone.0116391, 2015.
Yuan, Z. Y., Chen, H. Y. H., and Reich, P. B.: Global-scale latitudinal patterns of plant fine-root nitrogen and phosphorus, Nat. Commun., 2, 344, https://doi.org/10.1038/ncomms1346, 2011.
Zhang, Q. Z., Wang, C. K., Wang, X. C., and Quan, X. K.: Carbon concentration variability of 10 Chinese temperate tree species, Forest Ecol. Manag., 258, 722–727, https://doi.org/10.1016/j.foreco.2009.05.009, 2009.
Zhao, N., Yu, G. R., He, N. P., Wang, Q. F., Guo, D. L., Zhang, X. Y., Wang, R. L., Xu, Z. W., Jiao, C. C., Li, N. N., and Jia, Y. L.: Coordinated pattern of multi-element variability in leaves and roots across Chinese forest biomes, Global Ecol. Biogeogr., 25, 359–367, 2016.
Zhu, J. X., Hu, X. Y., Yao, H., Liu, G. H., Ji, C. J., and Fang, J. Y.: A significant carbon sink in temperate forests in Beijing: based on 20-year field measurements in three stands, Sci. China Life Sci., 58, 1135–1141, 2015.
Zhu, J. X., Hu, H. F., Tao, S. L., Chi, X. L., L, P., Jiang, L., Zhu, J. L., Tang, Z. Y., Pan, Y. D., Birdsey R. A., He, X. H., and Fang, J. Y.: Carbon stocks and changes of dead organic matter in China's forests, Nat. Commun., 8, 151, https://doi.org/10.1038/s41467-017-00207-1, 2017.
Short summary
Plant carbon (C) content is critical to the assessment of the global C cycle. Our results showed that the global average C contents in organs were significantly lower than a canonical value of 50 %. Plant C content tended to decrease with increasing latitude, and life form explained more variation than climate. Our findings suggest that specific C content values of different organs and life forms should be incorporated into the estimations of regional and global vegetation biomass C stocks.
Plant carbon (C) content is critical to the assessment of the global C cycle. Our results showed...
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