Articles | Volume 17, issue 4
https://doi.org/10.5194/bg-17-1133-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-17-1133-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
28 Feb 2020
Research article |
| 28 Feb 2020
| 28 Feb 2020
Distribution and behaviour of dissolved selenium in tropical peatland-draining rivers and estuaries of Malaysia
Yan Chang
CORRESPONDING AUTHOR
State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200062, China
Moritz Müller
Faculty of Engineering, Computing and Science Swinburne, University of Technology, Kuching 93350, Malaysia
Ying Wu
State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200062, China
Shan Jiang
State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200062, China
Wan Wan Cao
State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200062, China
Jian Guo Qu
State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200062, China
Jing Ling Ren
Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education, Ocean University of China, Qingdao 266100, China
Xiao Na Wang
State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200062, China
En Ming Rao
Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education, Ocean University of China, Qingdao 266100, China
Xiao Lu Wang
State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200062, China
Aazani Mujahid
Faculty of Resource Science and Technology, Universiti Malaysia Sarawak, Kuching 93350, Malaysia
Mohd Fakharuddin Muhamad
Faculty of Engineering, Computing and Science Swinburne, University of Technology, Kuching 93350, Malaysia
Edwin Sien Aun Sia
Faculty of Engineering, Computing and Science Swinburne, University of Technology, Kuching 93350, Malaysia
Faddrine Holt Ajon Jang
Faculty of Engineering, Computing and Science Swinburne, University of Technology, Kuching 93350, Malaysia
Jing Zhang
State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200062, China
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Shujin Guo, Mingliang Zhu, Wenlong Xu, Shan Zheng, Sumei Liu, Ying Wu, Juan Du, Chenhao Zhao, and Xiaoxia Sun
EGUsphere, https://doi.org/10.5194/egusphere-2025-2034, https://doi.org/10.5194/egusphere-2025-2034, 2025
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We studied how tiny particles in the ocean help move carbon from surface waters to the deep sea along the South China Sea slope. Using underwater cameras, we found that large particles, although fewer in number, carry most of the carbon downward. Ocean eddies strongly influenced this process. Our research helps explain how the ocean naturally stores carbon and why this process varies across regions and depths.
Johnathan Daniel Maxey, Neil D. Hartstein, Hermann W. Bange, and Moritz Müller
Biogeosciences, 21, 5613–5637, https://doi.org/10.5194/bg-21-5613-2024, https://doi.org/10.5194/bg-21-5613-2024, 2024
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The distribution of N2O in fjord-like estuaries is poorly described in the Southern Hemisphere. Our study describes N2O distribution and its drivers in one such system in Macquarie Harbour, Tasmania. Water samples were collected seasonally in 2022 and 2023. Results show the system removes atmospheric N2O when river flow is high, whereas the system emits N2O when the river flow is low. N2O generated in basins is intercepted by the surface water and exported to the ocean during high river flow.
Jenny Choo, Nagur Cherukuru, Eric Lehmann, Matt Paget, Aazani Mujahid, Patrick Martin, and Moritz Müller
Biogeosciences, 19, 5837–5857, https://doi.org/10.5194/bg-19-5837-2022, https://doi.org/10.5194/bg-19-5837-2022, 2022
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This study presents the first observation of water quality changes over space and time in the coastal systems of Sarawak, Malaysian Borneo, using remote sensing technologies. While our findings demonstrate that the southwestern coast of Sarawak is within local water quality standards, historical patterns of water quality degradation that were detected can help to alert local authorities and enhance management and monitoring strategies of coastal waters in this region.
Johnathan Daniel Maxey, Neil David Hartstein, Aazani Mujahid, and Moritz Müller
Biogeosciences, 19, 3131–3150, https://doi.org/10.5194/bg-19-3131-2022, https://doi.org/10.5194/bg-19-3131-2022, 2022
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Deep coastal inlets are important sites for regulating land-based organic pollution before it enters coastal oceans. This study focused on how large climate forces, rainfall, and river flow impact organic loading and oxygen conditions in a coastal inlet in Tasmania. Increases in rainfall were linked to higher organic loading and lower oxygen in basin waters. Finally we observed a significant correlation between the Southern Annular Mode and oxygen concentrations in the system's basin waters.
Alexandra Klemme, Tim Rixen, Denise Müller-Dum, Moritz Müller, Justus Notholt, and Thorsten Warneke
Biogeosciences, 19, 2855–2880, https://doi.org/10.5194/bg-19-2855-2022, https://doi.org/10.5194/bg-19-2855-2022, 2022
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Tropical peat-draining rivers contain high amounts of carbon. Surprisingly, measured carbon dioxide (CO2) emissions from those rivers are comparatively moderate. We compiled data from 10 Southeast Asian rivers and found that CO2 production within these rivers is hampered by low water pH, providing a natural threshold for CO2 emissions. Furthermore, we find that enhanced carbonate input, e.g. caused by human activities, suspends this natural threshold and causes increased CO2 emissions.
Zhuo-Yi Zhu, Joanne Oakes, Bradley Eyre, Youyou Hao, Edwin Sien Aun Sia, Shan Jiang, Moritz Müller, and Jing Zhang
Biogeosciences, 17, 2473–2485, https://doi.org/10.5194/bg-17-2473-2020, https://doi.org/10.5194/bg-17-2473-2020, 2020
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Samples were collected in August 2016 in the Rajang River and its estuary, with tropical forest in the river basin and peatland in the estuary. Organic matter composition was influenced by transportation in the river basin, whereas peatland added clear biodegraded parts to the fluvial organic matter, which implies modification of the initial lability and/or starting points in the subsequent degradation and alternation processes after the organic matter enters the sea.
Xiaohui Zhang, Moritz Müller, Shan Jiang, Ying Wu, Xunchi Zhu, Aazani Mujahid, Zhuoyi Zhu, Mohd Fakharuddin Muhamad, Edwin Sien Aun Sia, Faddrine Holt Ajon Jang, and Jing Zhang
Biogeosciences, 17, 1805–1819, https://doi.org/10.5194/bg-17-1805-2020, https://doi.org/10.5194/bg-17-1805-2020, 2020
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This study offered detailed information on dFe concentrations, distribution and the magnitude of yield in the Rajang River, the largest river in Malaysia. Three blackwater rivers, draining from peatlands, were also included in our study. Compared with the Rajang River, the dFe concentrations and yield from three blackwater rivers were much higher. The precipitation and agricultural activities, such as palm oil plantations, may markedly increase the concentration dFe in these tropical rivers.
Ying Wu, Kun Zhu, Jing Zhang, Moritz Müller, Shan Jiang, Aazani Mujahid, Mohd Fakharuddin Muhamad, and Edwin Sien Aun Sia
Biogeosciences, 16, 4517–4533, https://doi.org/10.5194/bg-16-4517-2019, https://doi.org/10.5194/bg-16-4517-2019, 2019
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Our understanding of terrestrial organic matter (TOM) in tropical peat-draining rivers remains limited, especially in Southeast Asia. We explored the characteristics of TOM via bulk parameters and lignin phenols of sediment in Malaysia. This showed that the most important plant source of the organic matter in these rivers is woody angiosperm C3 plants with limited diagenetic alteration. This slower degradation of TOM may be a link to higher total nitrogen content, especially for the small river.
Hermann W. Bange, Chun Hock Sim, Daniel Bastian, Jennifer Kallert, Annette Kock, Aazani Mujahid, and Moritz Müller
Biogeosciences, 16, 4321–4335, https://doi.org/10.5194/bg-16-4321-2019, https://doi.org/10.5194/bg-16-4321-2019, 2019
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Nitrous oxide (N2O) and methane (CH4) are atmospheric trace gases which play important roles in the climate and atmospheric chemistry of the Earth. However, little is known about their emissions from rivers and estuaries. To this end, concentrations of N2O and CH4 were measured during a seasonal study in six rivers and estuaries in northwestern Borneo. The concentrations of both gases were mainly driven by rainfall. The rivers and estuaries were an overall net source of atmospheric N2O and CH4.
Edwin Sien Aun Sia, Zhuoyi Zhu, Jing Zhang, Wee Cheah, Shan Jiang, Faddrine Holt Jang, Aazani Mujahid, Fuh-Kwo Shiah, and Moritz Müller
Biogeosciences, 16, 4243–4260, https://doi.org/10.5194/bg-16-4243-2019, https://doi.org/10.5194/bg-16-4243-2019, 2019
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Microbial community composition and diversity in freshwater habitats are much less studied compared to marine and soil communities. This study presents the first assessment of microbial communities of the Rajang River, the longest river in Malaysia, expanding our knowledge of microbial ecology in tropical regions. Areas surrounded by oil palm plantations showed the lowest diversity and other signs of anthropogenic impacts included the presence of CFB groups as well as probable algal blooms.
Shan Jiang, Moritz Müller, Jie Jin, Ying Wu, Kun Zhu, Guosen Zhang, Aazani Mujahid, Tim Rixen, Mohd Fakharuddin Muhamad, Edwin Sien Aun Sia, Faddrine Holt Ajon Jang, and Jing Zhang
Biogeosciences, 16, 2821–2836, https://doi.org/10.5194/bg-16-2821-2019, https://doi.org/10.5194/bg-16-2821-2019, 2019
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Three cruises were conducted in the Rajang River estuary, Malaysia. The results revealed that the decomposition of terrestrial organic matter and the subsequent soil leaching were the main sources of dissolved inorganic nitrogen (DIN) in the fresh river water. Porewater exchange and ammonification enhanced DIN concentrations in the estuary water, while intensities of DIN addition varied between seasons. The riverine DIN flux could reach 101.5 ton(N) / d, supporting the coastal primary producers.
Yongli Zhou, Patrick Martin, and Moritz Müller
Biogeosciences, 16, 2733–2749, https://doi.org/10.5194/bg-16-2733-2019, https://doi.org/10.5194/bg-16-2733-2019, 2019
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We found that peatlands in coastal Sarawak, Borneo, export extremely humified organic matter, which dominates the riverine organic matter pool and conservatively mixes with seawater, while the freshly produced fraction is low and stable in concentration at all salinities. We estimated that terrigenous fractions, which showed high photolability, still account for 20 % of the coastal dissolved organic carbon pool, implying the importance of peat-derived organic matter in the coastal carbon cycle.
Edwin Sien Aun Sia, Jing Zhang, Shan Jiang, Zhuoyi Zhu, Gonzalo Carrasco, Faddrine Holt Jang, Aazani Mujahid, and Moritz Müller
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-219, https://doi.org/10.5194/bg-2019-219, 2019
Revised manuscript not accepted
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Nutrient loads carried by large rivers and discharged into the continental shelf and coastal waters are vital to support primary production. Our knowledge of tropical river systems is fragmented with very few seasonal studies available for Southeast Asia (SEA). We present data from three sampling campaigns on the longest river in Malaysia, the Rajang river. Our results show the generalization of SEA as a nutrient hotspot might not hold true for all regions and requires further investigation.
Denise Müller-Dum, Thorsten Warneke, Tim Rixen, Moritz Müller, Antje Baum, Aliki Christodoulou, Joanne Oakes, Bradley D. Eyre, and Justus Notholt
Biogeosciences, 16, 17–32, https://doi.org/10.5194/bg-16-17-2019, https://doi.org/10.5194/bg-16-17-2019, 2019
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Southeast Asian peat-draining rivers are potentially strong sources of carbon to the atmosphere due to the large amounts of organic carbon stored in those ecosystems. We present the first assessment of CO2 emissions from the Rajang River, the largest peat-draining river in Malaysia. The peatlands’ influence on the CO2 emissions from the Rajang River was smaller than expected, probably due to their proximity to the coast. Therefore, the Rajang was only a moderate source of CO2 to the atmosphere.
Patrick Martin, Nagur Cherukuru, Ashleen S. Y. Tan, Nivedita Sanwlani, Aazani Mujahid, and Moritz Müller
Biogeosciences, 15, 6847–6865, https://doi.org/10.5194/bg-15-6847-2018, https://doi.org/10.5194/bg-15-6847-2018, 2018
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The carbon cycle is a key control for the Earth's climate. Every year rivers deliver a lot of organic carbon to coastal seas, but we do not know what happens to this carbon, particularly in the tropics. We show that rivers in Borneo deliver carbon from peat swamps to the sea with at most minimal biological or chemical alteration in estuaries, but sunlight can rapidly oxidise this carbon to CO2. This means that south-east Asian seas are likely hotspots of terrestrial carbon decomposition.
Zhuo-Yi Zhu, Ying Wu, Su-Mei Liu, Fred Wenger, Jun Hu, Jing Zhang, and Rui-Feng Zhang
Biogeosciences, 13, 975–987, https://doi.org/10.5194/bg-13-975-2016, https://doi.org/10.5194/bg-13-975-2016, 2016
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Svalbard archipelago has lots of valley glaciers, and its position in organic carbon flux to ocean remains unclear. In this work, we found that these valley glaciers have a much higher area-weighted and discharge-weighted organic carbon flux, relative to Greenland Ice Sheet, and are comparable to other valley glaciers like those in the Alaska region. Hence Svalbard glaciers are an important source for terrestrial carbon.
R. H. Li, S. M. Liu, Y. W. Li, G. L. Zhang, J. L. Ren, and J. Zhang
Biogeosciences, 11, 481–506, https://doi.org/10.5194/bg-11-481-2014, https://doi.org/10.5194/bg-11-481-2014, 2014
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Feifei Liu, Ute Daewel, Jan Kossack, Kubilay Timur Demir, Helmuth Thomas, and Corinna Schrum
Biogeosciences, 22, 3699–3719, https://doi.org/10.5194/bg-22-3699-2025, https://doi.org/10.5194/bg-22-3699-2025, 2025
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Vlad A. Macovei, Louise C. V. Rewrie, Rüdiger Röttgers, and Yoana G. Voynova
Biogeosciences, 22, 3375–3396, https://doi.org/10.5194/bg-22-3375-2025, https://doi.org/10.5194/bg-22-3375-2025, 2025
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We found that biogeochemical variability at the land–sea interface (LSI) in two major temperate estuaries is modulated by the 14 d spring–neap tidal cycle, with large effects on dissolved inorganic and organic carbon concentrations and distribution. As this effect increases the strength of the carbon source to the atmosphere by up to 74 % during spring tide, it should be accounted for in regional models, which aim to resolve biogeochemical processing at the LSI.
David Curbelo-Hernández, David González-Santana, Aridane G. González, J. Magdalena Santana-Casiano, and Melchor González-Dávila
Biogeosciences, 22, 3329–3356, https://doi.org/10.5194/bg-22-3329-2025, https://doi.org/10.5194/bg-22-3329-2025, 2025
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Darren J. Pilcher, Jessica N. Cross, Natalie Monacci, Linquan Mu, Kelly A. Kearney, Albert J. Hermann, and Wei Cheng
Biogeosciences, 22, 3103–3125, https://doi.org/10.5194/bg-22-3103-2025, https://doi.org/10.5194/bg-22-3103-2025, 2025
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Daniel Müller, Bo Liu, Walter Geibert, Moritz Holtappels, Lasse Sander, Elda Miramontes, Heidi Taubner, Susann Henkel, Kai-Uwe Hinrichs, Denise Bethke, Ingrid Dohrmann, and Sabine Kasten
Biogeosciences, 22, 2541–2567, https://doi.org/10.5194/bg-22-2541-2025, https://doi.org/10.5194/bg-22-2541-2025, 2025
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Coastal and shelf sediments are the most important sinks for organic carbon (OC) on Earth. We produced a new high-resolution sediment and porewater data set from the Helgoland Mud Area (HMA), North Sea, to determine which depositional factors control the preservation of OC. The burial efficiency is highest in an area of high sedimentation and terrigenous OC. The HMA covers 0.09 % of the North Sea but accounts for 0.76 % of its OC accumulation, highlighting the importance of the depocentre.
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Biogeosciences, 22, 2383–2402, https://doi.org/10.5194/bg-22-2383-2025, https://doi.org/10.5194/bg-22-2383-2025, 2025
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Biogeosciences, 22, 2309–2325, https://doi.org/10.5194/bg-22-2309-2025, https://doi.org/10.5194/bg-22-2309-2025, 2025
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This study explores how microbial dynamics influence the dissolved organic matter (DOM) pool in the Patagonian Shelf. Despite high phytoplankton biomass, selective grazing on fast-growing bacteria led to DOM accumulation, likely due to reduced DOM-consuming bacteria and added egestion compounds. Experiments showed that bacteria not only acted as a carbon sink through mineralization but also transferred assimilated carbon dioxide (CO2) to higher trophic levels.
Librada Ramírez, Leonardo J. Pozzo-Pirotta, Aja Trebec, Víctor Manzanares-Vázquez, José L. Díez, Javier Arístegui, Ulf Riebesell, Stephen D. Archer, and María Segovia
Biogeosciences, 22, 1865–1886, https://doi.org/10.5194/bg-22-1865-2025, https://doi.org/10.5194/bg-22-1865-2025, 2025
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We studied the potential effects of increasing ocean alkalinity on a natural plankton community in subtropical waters of the Atlantic near Gran Canaria, Spain. Alkalinity is the capacity of water to resist acidification, and plankton are usually microscopic plants (phytoplankton) and animals (zooplankton), often less than 2.5 cm in length. This study suggests that increasing ocean alkalinity did not have a significant negative impact on the plankton community studied.
Leissing Frederick, Mauricio A. Urbina, and Ruben Escribano
Biogeosciences, 22, 1839–1852, https://doi.org/10.5194/bg-22-1839-2025, https://doi.org/10.5194/bg-22-1839-2025, 2025
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Evidence shows that due to global warming, zooplankton inhabiting the coastal upwelling zone are exposed to increasing hypoxia affecting their physiology, metabolism, and population dynamics. The adaptive responses of zooplankton to cope with mild/severe hypoxia may depend on trade-offs with other metabolic/energy demands, implying less energy for growth, feeding, and reproduction, with ecological consequences for the zooplankton population and the marine food web.
Riss M. Kell, Adam V. Subhas, Nicole L. Schanke, Lauren E. Lees, Rebecca J. Chmiel, Deepa Rao, Margaret M. Brisbin, Dawn M. Moran, Matthew R. McIlvin, Francesco Bolinesi, Olga Mangoni, Raffaella Casotti, Cecilia Balestra, Tristan Horner, Robert B. Dunbar, Andrew E. Allen, Giacomo R. DiTullio, and Mak A. Saito
EGUsphere, https://doi.org/10.1101/2023.11.05.565706, https://doi.org/10.1101/2023.11.05.565706, 2025
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Photosynthetic productivity is strongly influenced by water column nutrient availability. Despite the importance of zinc, definitive evidence for oceanic zinc limitation of photosynthesis has been scarce. We applied multiple biogeochemical measurements to a field site in Terra Nova Bay, Antarctica, to demonstrate that the phytoplankton community was experiencing zinc limitation. This field evidence paves the way for future experimental studies to consider Zn as a limiting oceanic micronutrient.
Sören Iwe, Oliver Schmale, and Bernd Schneider
Biogeosciences, 22, 1767–1779, https://doi.org/10.5194/bg-22-1767-2025, https://doi.org/10.5194/bg-22-1767-2025, 2025
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We present a novel method for quantifying N2 fixation by cyanobacteria, which is crucial in Baltic Sea eutrophication. Our Gas Equilibrium – Membrane-Inlet Mass Spectrometer (GE-MIMS), designed for operation on voluntary observing ships (VOSs), enables large-scale monitoring of surface water N2 depletion caused by N2 fixation. Laboratory tests confirm the device’s accuracy and precision, ensuring that it can complement current methods and contribute valuable data for better understanding N2 fixation in the Baltic Sea.
Caroline P. Slomp, Martijn Hermans, Niels A. G. M. van Helmond, Silke Severmann, James McManus, Marit R. van Erk, and Sairah Malkin
EGUsphere, https://doi.org/10.5194/egusphere-2025-817, https://doi.org/10.5194/egusphere-2025-817, 2025
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Cable bacteria couple oxidation of sulfide at depth in sediments with reduction of oxygen, nitrate or nitrite near the sediment surface, thereby preventing release of toxic hydrogen sulfide to the overlying water. We show evidence for a diversity of cable bacteria in sediments from hypoxic and anoxic basins along the continental margin of California and Mexico. Cable bacteria activity in this setting is likely periodic and dependent on the supply of organic matter and/or oxygen.
Jenna Alyson Lee, Joseph H. Vineis, Mathieu A. Poupon, Laure Resplandy, and Bess B. Ward
EGUsphere, https://doi.org/10.5194/egusphere-2025-871, https://doi.org/10.5194/egusphere-2025-871, 2025
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Concurrent sampling of environmental parameters, productivity rates, photopigments, and DNA were used to analyze a 24–L estuarine diatom bloom microcosm. Biogeochemical data and an ecological model indicated that the bloom was terminated by grazing. Comparisons to previous studies revealed (1) additional community and diversity complexity using 18S amplicon vs. traditional pigment–based analyses, and (2) a potential global productivity–diversity relationship using 18S and carbon transport rates.
Yong-Woo Lee, Mi-Ok Park, Seong-Gil Kim, Tae-Hoon Kim, Yong Hwa Oh, Sang Heon Lee, and DongJoo Joung
Biogeosciences, 22, 675–690, https://doi.org/10.5194/bg-22-675-2025, https://doi.org/10.5194/bg-22-675-2025, 2025
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Long-term pH variation in coastal waters along the Korean Peninsula was assessed for the first time, and it exhibited no significant pH change over an 11-year period. This contrasts with the ongoing pH decline in open oceans and other coastal areas. Analysis of environmental data showed that pH is mainly controlled by dissolved oxygen in bottom waters. This suggests that ocean warming could cause a pH decline in Korean coastal waters, affecting many fish and seaweed aquaculture operations.
Kadir Biçe, Tristen Myers Stewart, George G. Waldbusser, and Christof Meile
Biogeosciences, 22, 641–657, https://doi.org/10.5194/bg-22-641-2025, https://doi.org/10.5194/bg-22-641-2025, 2025
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We studied the effect of addition of carbonate minerals on coastal sediments. We carried out laboratory experiments to quantify the dissolution kinetics and integrated these observations into a numerical model that describes biogeochemical cycling in surficial sediments. Using the model, we demonstrate the buffering effect of the mineral additions and their duration. We quantify the effect under different environmental conditions and assess the potential for increased atmospheric CO2 uptake.
Mariche Bandibas Natividad, Jian-Jhih Chen, Hsin-Yu Chou, Lan-Feng Fan, Yi-Le Shen, and Wen-Chen Chou
EGUsphere, https://doi.org/10.5194/egusphere-2024-4000, https://doi.org/10.5194/egusphere-2024-4000, 2025
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Seagrass restoration serves as a nature-based solution for CO2 removal. We examined the organic carbon and carbonate dynamics of restored seagrasses (SG) and bare sediments (BS) using ex situ core incubations. SG exhibited higher net ecosystem metabolism compared to BS, while no significant difference was observed in net ecosystem calcification. Consequently, SG demonstrated a significantly enhanced overall capacity for carbon uptake.
Jessica L. Oberlander, Mackenzie E. Burke, Cat A. London, and Hugh L. MacIntyre
Biogeosciences, 22, 499–512, https://doi.org/10.5194/bg-22-499-2025, https://doi.org/10.5194/bg-22-499-2025, 2025
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Ocean alkalinity enhancement (OAE) is a promising negative emission technology that results in the net sequestration of atmospheric carbon. In this paper, we assess the potential impact of OAE on phytoplankton through an analysis of prior studies and the effects of simulated OAE on photosynthetic competence. Our findings suggest that there may be little if any significant impact on most phytoplankton studied to date if OAE is conducted in well-flushed, nearshore environments.
Yue Nan, Zheng Chen, Bin Wang, Bo Liang, and Jiatang Hu
EGUsphere, https://doi.org/10.5194/egusphere-2024-4013, https://doi.org/10.5194/egusphere-2024-4013, 2025
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Human activities are changing the coastal water environment, but the role of suspended sediments in oxygen loss is not well understood. We used a model to compare dissolved oxygen levels and related factors in the 1990s and 2010s in the Pearl River Estuary. Reduced suspended sediments and increased pollution have expanded low-oxygen areas by 1.5 times. It highlights that declining suspended sediments increase hypoxia in estuaries, especially with rising nutrients, which need urgent attention.
Yayla Sezginer, Kate Schuler, Emily Speciale, Adrian Marchetti, Claire Till, Ralph Till, and Philippe Tortell
EGUsphere, https://doi.org/10.5194/egusphere-2024-3812, https://doi.org/10.5194/egusphere-2024-3812, 2025
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We recorded three metrics of photosynthesis in the California Current. Real-time observations of microalgae physiology and productivity revealed signs of iron limitation where the continental shelf rapidly dropped off. Iron limitation influenced how efficiently light was absorbed and used for carbon fixation but did not appear to affect net photosynthetic oxygen production. Our results offer useful insights towards efforts to model carbon fixation rates from microalgae optical properties.
Laura Marín-Samper, Javier Arístegui, Nauzet Hernández-Hernández, and Ulf Riebesell
Biogeosciences, 21, 5707–5724, https://doi.org/10.5194/bg-21-5707-2024, https://doi.org/10.5194/bg-21-5707-2024, 2024
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This study exposed a natural community to two non-CO2-equilibrated ocean alkalinity enhancement (OAE) deployments using different minerals. Adding alkalinity in this manner decreases dissolved CO2, essential for photosynthesis. While photosynthesis was not suppressed, bloom formation was mildly delayed, potentially impacting marine food webs. The study emphasizes the need for further research on OAE without prior equilibration and on its ecological implications.
Riss M. Kell, Rebecca J. Chmiel, Deepa Rao, Dawn M. Moran, Matthew R. McIlvin, Tristan J. Horner, Nicole L. Schanke, Ichiko Sugiyama, Robert B. Dunbar, Giacomo R. DiTullio, and Mak A. Saito
Biogeosciences, 21, 5685–5706, https://doi.org/10.5194/bg-21-5685-2024, https://doi.org/10.5194/bg-21-5685-2024, 2024
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Despite interest in modeling the biogeochemical uptake and cycling of the trace metal zinc (Zn), measurements of Zn uptake in natural marine phytoplankton communities have not been conducted previously. To fill this gap, we employed a stable isotope uptake rate measurement method to quantify Zn uptake into natural phytoplankton assemblages within the Southern Ocean. Zn demand was high and rapid enough to depress the inventory of Zn available to phytoplankton on seasonal timescales.
Luisa Chiara Meiritz, Tim Rixen, Anja Karin van der Plas, Tarron Lamont, and Niko Lahajnar
Biogeosciences, 21, 5261–5276, https://doi.org/10.5194/bg-21-5261-2024, https://doi.org/10.5194/bg-21-5261-2024, 2024
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Moored and drifting sediment trap experiments in the northern (nBUS) and southern (sBUS) Benguela Upwelling System showed that active carbon fluxes by vertically migrating zooplankton were about 3 times higher in the sBUS than in the nBUS. Despite these large variabilities, the mean passive particulate organic carbon (POC) fluxes were almost equal in the two subsystems. The more intense near-bottom oxygen minimum layer seems to lead to higher POC fluxes and accumulation rates in the nBUS.
Michael R. Roman, Andrew H. Altieri, Denise Breitburg, Erica M. Ferrer, Natalya D. Gallo, Shin-ichi Ito, Karin Limburg, Kenneth Rose, Moriaki Yasuhara, and Lisa A. Levin
Biogeosciences, 21, 4975–5004, https://doi.org/10.5194/bg-21-4975-2024, https://doi.org/10.5194/bg-21-4975-2024, 2024
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Oxygen-depleted ocean waters have increased worldwide. In order to improve our understanding of the impacts of this oxygen loss on marine life it is essential that we develop reliable indicators that track the negative impacts of low oxygen. We review various indicators of low-oxygen stress for marine animals including their use, research needs, and application to confront the challenges of ocean oxygen loss.
Charlotte Eich, Mathijs van Manen, J. Scott P. McCain, Loay J. Jabre, Willem H. van de Poll, Jinyoung Jung, Sven B. E. H. Pont, Hung-An Tian, Indah Ardiningsih, Gert-Jan Reichart, Erin M. Bertrand, Corina P. D. Brussaard, and Rob Middag
Biogeosciences, 21, 4637–4663, https://doi.org/10.5194/bg-21-4637-2024, https://doi.org/10.5194/bg-21-4637-2024, 2024
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Phytoplankton growth in the Southern Ocean (SO) is often limited by low iron (Fe) concentrations. Sea surface warming impacts Fe availability and can affect phytoplankton growth. We used shipboard Fe clean incubations to test how changes in Fe and temperature affect SO phytoplankton. Their abundances usually increased with Fe addition and temperature increase, with Fe being the major factor. These findings imply potential shifts in ecosystem structure, impacting food webs and elemental cycling.
Miriam Tivig, David P. Keller, and Andreas Oschlies
Biogeosciences, 21, 4469–4493, https://doi.org/10.5194/bg-21-4469-2024, https://doi.org/10.5194/bg-21-4469-2024, 2024
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Marine biological production is highly dependent on the availability of nitrogen and phosphorus. Rivers are the main source of phosphorus to the oceans but poorly represented in global model oceans. We include dissolved nitrogen and phosphorus from river export in a global model ocean and find that the addition of riverine phosphorus affects marine biology on millennial timescales more than riverine nitrogen alone. Globally, riverine phosphorus input increases primary production rates.
Esdoorn Willcox, Marcos Lemes, Thomas Juul-Pedersen, Mikael Kristian Sejr, Johnna Marchiano Holding, and Søren Rysgaard
Biogeosciences, 21, 4037–4050, https://doi.org/10.5194/bg-21-4037-2024, https://doi.org/10.5194/bg-21-4037-2024, 2024
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In this work, we measured the chemistry of seawater from samples obtained from different depths and locations off the east coast of the Northeast Greenland National Park to determine what is influencing concentrations of dissolved CO2. Historically, the region has always been thought to take up CO2 from the atmosphere, but we show that it is possible for the region to become a source in late summer. We discuss the variables that may be related to such changes.
Lennart Thomas Bach, Aaron James Ferderer, Julie LaRoche, and Kai Georg Schulz
Biogeosciences, 21, 3665–3676, https://doi.org/10.5194/bg-21-3665-2024, https://doi.org/10.5194/bg-21-3665-2024, 2024
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Ocean alkalinity enhancement (OAE) is an emerging marine CO2 removal method, but its environmental effects are insufficiently understood. The OAE Pelagic Impact Intercomparison Project (OAEPIIP) provides funding for a standardized and globally replicated microcosm experiment to study the effects of OAE on plankton communities. Here, we provide a detailed manual for the OAEPIIP experiment. We expect OAEPIIP to help build scientific consensus on the effects of OAE on plankton.
Marlena Szeligowska, Déborah Benkort, Anna Przyborska, Mateusz Moskalik, Bernabé Moreno, Emilia Trudnowska, and Katarzyna Błachowiak-Samołyk
Biogeosciences, 21, 3617–3639, https://doi.org/10.5194/bg-21-3617-2024, https://doi.org/10.5194/bg-21-3617-2024, 2024
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The European Arctic is experiencing rapid regional warming, causing glaciers that terminate in the sea to retreat onto land. Due to this process, the area of a well-studied fjord, Hornsund, has increased by around 100 km2 (40%) since 1976. Combining satellite and in situ data with a mathematical model, we estimated that, despite some negative consequences of glacial meltwater release, such emerging coastal waters could mitigate climate change by increasing carbon uptake and storage by sediments.
Mallory C. Ringham, Nathan Hirtle, Cody Shaw, Xi Lu, Julian Herndon, Brendan R. Carter, and Matthew D. Eisaman
Biogeosciences, 21, 3551–3570, https://doi.org/10.5194/bg-21-3551-2024, https://doi.org/10.5194/bg-21-3551-2024, 2024
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Ocean alkalinity enhancement leverages the large surface area and carbon storage capacity of the oceans to store atmospheric CO2 as dissolved bicarbonate. We monitored CO2 uptake in seawater treated with NaOH to establish operational boundaries for carbon removal experiments. Results show that CO2 equilibration occurred on the order of weeks to months, was consistent with values expected from equilibration calculations, and was limited by mineral precipitation at high pH and CaCO3 saturation.
Riel Carlo O. Ingeniero, Gesa Schulz, and Hermann W. Bange
Biogeosciences, 21, 3425–3440, https://doi.org/10.5194/bg-21-3425-2024, https://doi.org/10.5194/bg-21-3425-2024, 2024
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Our research is the first to measure dissolved NO concentrations in temperate estuarine waters, providing insights into its distribution under varying conditions and enhancing our understanding of its production processes. Dissolved NO was supersaturated in the Elbe Estuary, indicating that it is a source of atmospheric NO. The observed distribution of dissolved NO most likely resulted from nitrification.
Weiyi Tang, Jeff Talbott, Timothy Jones, and Bess B. Ward
Biogeosciences, 21, 3239–3250, https://doi.org/10.5194/bg-21-3239-2024, https://doi.org/10.5194/bg-21-3239-2024, 2024
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Wastewater treatment plants (WWTPs) are known to be hotspots of greenhouse gas emissions. However, the impact of WWTPs on the emission of the greenhouse gas N2O in downstream aquatic environments is less constrained. We found spatially and temporally variable but overall higher N2O concentrations and fluxes in waters downstream of WWTPs, pointing to the need for efficient N2O removal in addition to the treatment of nitrogen in WWTPs.
Amanda Y. L. Cheong, Kogila Vani Annammala, Ee Ling Yong, Yongli Zhou, Robert S. Nichols, and Patrick Martin
Biogeosciences, 21, 2955–2971, https://doi.org/10.5194/bg-21-2955-2024, https://doi.org/10.5194/bg-21-2955-2024, 2024
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We measured nutrients and dissolved organic matter for 1 year in a eutrophic tropical estuary to understand their sources and cycling. Our data show that the dissolved organic matter originates partly from land and partly from microbial processes in the water. Internal recycling is likely important for maintaining high nutrient concentrations, and we found that there is often excess nitrogen compared to silicon and phosphorus. Our data help to explain how eutrophication persists in this system.
Aaron Ferderer, Kai G. Schulz, Ulf Riebesell, Kirralee G. Baker, Zanna Chase, and Lennart T. Bach
Biogeosciences, 21, 2777–2794, https://doi.org/10.5194/bg-21-2777-2024, https://doi.org/10.5194/bg-21-2777-2024, 2024
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Ocean alkalinity enhancement (OAE) is a promising method of atmospheric carbon removal; however, its ecological impacts remain largely unknown. We assessed the effects of simulated silicate- and calcium-based mineral OAE on diatom silicification. We found that increased silicate concentrations from silicate-based OAE increased diatom silicification. In contrast, the enhancement of alkalinity had no effect on community silicification and minimal effects on the silicification of different genera.
David González-Santana, María Segovia, Melchor González-Dávila, Librada Ramírez, Aridane G. González, Leonardo J. Pozzo-Pirotta, Veronica Arnone, Victor Vázquez, Ulf Riebesell, and J. Magdalena Santana-Casiano
Biogeosciences, 21, 2705–2715, https://doi.org/10.5194/bg-21-2705-2024, https://doi.org/10.5194/bg-21-2705-2024, 2024
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In a recent experiment off the coast of Gran Canaria (Spain), scientists explored a method called ocean alkalinization enhancement (OAE), where carbonate minerals were added to seawater. This process changed the levels of certain ions in the water, affecting its pH and buffering capacity. The researchers were particularly interested in how this could impact the levels of essential trace metals in the water.
Lucas Porz, Wenyan Zhang, Nils Christiansen, Jan Kossack, Ute Daewel, and Corinna Schrum
Biogeosciences, 21, 2547–2570, https://doi.org/10.5194/bg-21-2547-2024, https://doi.org/10.5194/bg-21-2547-2024, 2024
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Seafloor sediments store a large amount of carbon, helping to naturally regulate Earth's climate. If disturbed, some sediment particles can turn into CO2, but this effect is not well understood. Using computer simulations, we found that bottom-contacting fishing gears release about 1 million tons of CO2 per year in the North Sea, one of the most heavily fished regions globally. We show how protecting certain areas could reduce these emissions while also benefitting seafloor-living animals.
Jiaying A. Guo, Robert F. Strzepek, Kerrie M. Swadling, Ashley T. Townsend, and Lennart T. Bach
Biogeosciences, 21, 2335–2354, https://doi.org/10.5194/bg-21-2335-2024, https://doi.org/10.5194/bg-21-2335-2024, 2024
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Ocean alkalinity enhancement aims to increase atmospheric CO2 sequestration by adding alkaline materials to the ocean. We assessed the environmental effects of olivine and steel slag powder on coastal plankton. Overall, slag is more efficient than olivine in releasing total alkalinity and, thus, in its ability to sequester CO2. Slag also had less environmental effect on the enclosed plankton communities when considering its higher CO2 removal potential based on this 3-week experiment.
Giovanni Galli, Sarah Wakelin, James Harle, Jason Holt, and Yuri Artioli
Biogeosciences, 21, 2143–2158, https://doi.org/10.5194/bg-21-2143-2024, https://doi.org/10.5194/bg-21-2143-2024, 2024
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This work shows that, under a high-emission scenario, oxygen concentration in deep water of parts of the North Sea and Celtic Sea can become critically low (hypoxia) towards the end of this century. The extent and frequency of hypoxia depends on the intensity of climate change projected by different climate models. This is the result of a complex combination of factors like warming, increase in stratification, changes in the currents and changes in biological processes.
Sandy E. Tenorio and Laura Farías
Biogeosciences, 21, 2029–2050, https://doi.org/10.5194/bg-21-2029-2024, https://doi.org/10.5194/bg-21-2029-2024, 2024
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Time series studies show that CH4 is highly dynamic on the coastal ocean surface and planktonic communities are linked to CH4 accumulation, as found in coastal upwelling off Chile. We have identified the crucial role of picoplankton (> 3 µm) in CH4 recycling, especially with the addition of methylated substrates (trimethylamine and methylphosphonic acid) during upwelling and non-upwelling periods. These insights improve understanding of surface ocean CH4 recycling, aiding CH4 emission estimates.
Charlotte A. J. Williams, Tom Hull, Jan Kaiser, Claire Mahaffey, Naomi Greenwood, Matthew Toberman, and Matthew R. Palmer
Biogeosciences, 21, 1961–1971, https://doi.org/10.5194/bg-21-1961-2024, https://doi.org/10.5194/bg-21-1961-2024, 2024
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Oxygen (O2) is a key indicator of ocean health. The risk of O2 loss in the productive coastal/continental slope regions is increasing. Autonomous underwater vehicles equipped with O2 optodes provide lots of data but have problems resolving strong vertical O2 changes. Here we show how to overcome this and calculate how much O2 is supplied to the low-O2 bottom waters via mixing. Bursts in mixing supply nearly all of the O2 to bottom waters in autumn, stopping them reaching ecologically low levels.
Sabine Schmidt and Ibrahima Iris Diallo
Biogeosciences, 21, 1785–1800, https://doi.org/10.5194/bg-21-1785-2024, https://doi.org/10.5194/bg-21-1785-2024, 2024
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Along the French coast facing the Bay of Biscay, the large Gironde and Loire estuaries suffer from hypoxia. This prompted a study of the small Charente estuary located between them. This work reveals a minimum oxygen zone in the Charente estuary, which extends for about 25 km. Temperature is the main factor controlling the hypoxia. This calls for the monitoring of small turbid macrotidal estuaries that are vulnerable to hypoxia, a risk expected to increase with global warming.
Simone R. Alin, Jan A. Newton, Richard A. Feely, Samantha Siedlecki, and Dana Greeley
Biogeosciences, 21, 1639–1673, https://doi.org/10.5194/bg-21-1639-2024, https://doi.org/10.5194/bg-21-1639-2024, 2024
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We provide a new multi-stressor data product that allows us to characterize the seasonality of temperature, O2, and CO2 in the southern Salish Sea and delivers insights into the impacts of major marine heatwave and precipitation anomalies on regional ocean acidification and hypoxia. We also describe the present-day frequencies of temperature, O2, and ocean acidification conditions that cross thresholds of sensitive regional species that are economically or ecologically important.
Pamela Linford, Iván Pérez-Santos, Paulina Montero, Patricio A. Díaz, Claudia Aracena, Elías Pinilla, Facundo Barrera, Manuel Castillo, Aida Alvera-Azcárate, Mónica Alvarado, Gabriel Soto, Cécile Pujol, Camila Schwerter, Sara Arenas-Uribe, Pilar Navarro, Guido Mancilla-Gutiérrez, Robinson Altamirano, Javiera San Martín, and Camila Soto-Riquelme
Biogeosciences, 21, 1433–1459, https://doi.org/10.5194/bg-21-1433-2024, https://doi.org/10.5194/bg-21-1433-2024, 2024
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The Patagonian fjords comprise a world region where low-oxygen water and hypoxia conditions are observed. An in situ dataset was used to quantify the mechanism involved in the presence of these conditions in northern Patagonian fjords. Water mass analysis confirmed the contribution of Equatorial Subsurface Water in the advection of the low-oxygen water, and hypoxic conditions occurred when the community respiration rate exceeded the gross primary production.
Ting Wang, Buyun Du, Inke Forbrich, Jun Zhou, Joshua Polen, Elsie M. Sunderland, Prentiss H. Balcom, Celia Chen, and Daniel Obrist
Biogeosciences, 21, 1461–1476, https://doi.org/10.5194/bg-21-1461-2024, https://doi.org/10.5194/bg-21-1461-2024, 2024
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The strong seasonal increases of Hg in aboveground biomass during the growing season and the lack of changes observed after senescence in this salt marsh ecosystem suggest physiologically controlled Hg uptake pathways. The Hg sources found in marsh aboveground tissues originate from a mix of sources, unlike terrestrial ecosystems, where atmospheric GEM is the main source. Belowground plant tissues mostly take up Hg from soils. Overall, the salt marsh currently serves as a small net Hg sink.
Eleanor Simpson, Debby Ianson, Karen E. Kohfeld, Ana C. Franco, Paul A. Covert, Marty Davelaar, and Yves Perreault
Biogeosciences, 21, 1323–1353, https://doi.org/10.5194/bg-21-1323-2024, https://doi.org/10.5194/bg-21-1323-2024, 2024
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Shellfish aquaculture operates in nearshore areas where data on ocean acidification parameters are limited. We show daily and seasonal variability in pH and saturation states of calcium carbonate at nearshore aquaculture sites in British Columbia, Canada, and determine the contributing drivers of this variability. We find that nearshore locations have greater variability than open waters and that the uptake of carbon by phytoplankton is the major driver of pH and saturation state variability.
S. Alejandra Castillo Cieza, Rachel H. R. Stanley, Pierre Marrec, Diana N. Fontaine, E. Taylor Crockford, Dennis J. McGillicuddy Jr., Arshia Mehta, Susanne Menden-Deuer, Emily E. Peacock, Tatiana A. Rynearson, Zoe O. Sandwith, Weifeng Zhang, and Heidi M. Sosik
Biogeosciences, 21, 1235–1257, https://doi.org/10.5194/bg-21-1235-2024, https://doi.org/10.5194/bg-21-1235-2024, 2024
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The coastal ocean in the northeastern USA provides many services, including fisheries and habitats for threatened species. In summer 2019, a bloom occurred of a large unusual phytoplankton, the diatom Hemiaulus, with nitrogen-fixing symbionts. This led to vast changes in productivity and grazing rates in the ecosystem. This work shows that the emergence of one species can have profound effects on ecosystem function. Such changes may become more prevalent as the ocean warms due to climate change.
Claudine Hauri, Brita Irving, Sam Dupont, Rémi Pagés, Donna D. W. Hauser, and Seth L. Danielson
Biogeosciences, 21, 1135–1159, https://doi.org/10.5194/bg-21-1135-2024, https://doi.org/10.5194/bg-21-1135-2024, 2024
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Arctic marine ecosystems are highly susceptible to impacts of climate change and ocean acidification. We present pH and pCO2 time series (2016–2020) from the Chukchi Ecosystem Observatory and analyze the drivers of the current conditions to get a better understanding of how climate change and ocean acidification could affect the ecological niches of organisms.
William Hiles, Lucy C. Miller, Craig Smeaton, and William E. N. Austin
Biogeosciences, 21, 929–948, https://doi.org/10.5194/bg-21-929-2024, https://doi.org/10.5194/bg-21-929-2024, 2024
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Saltmarsh soils may help to limit the rate of climate change by storing carbon. To understand their impacts, they must be accurately mapped. We use drone data to estimate the size of three saltmarshes in NE Scotland. We find that drone imagery, combined with tidal data, can reliably inform our understanding of saltmarsh size. When compared with previous work using vegetation communities, we find that our most reliable new estimates of stored carbon are 15–20 % smaller than previously estimated.
De'Marcus Robinson, Anh L. D. Pham, David J. Yousavich, Felix Janssen, Frank Wenzhöfer, Eleanor C. Arrington, Kelsey M. Gosselin, Marco Sandoval-Belmar, Matthew Mar, David L. Valentine, Daniele Bianchi, and Tina Treude
Biogeosciences, 21, 773–788, https://doi.org/10.5194/bg-21-773-2024, https://doi.org/10.5194/bg-21-773-2024, 2024
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The present study suggests that high release of ferrous iron from the seafloor of the oxygen-deficient Santa Barabara Basin (California) supports surface primary productivity, creating positive feedback on seafloor iron release by enhancing low-oxygen conditions in the basin.
David J. Yousavich, De'Marcus Robinson, Xuefeng Peng, Sebastian J. E. Krause, Frank Wenzhöfer, Felix Janssen, Na Liu, Jonathan Tarn, Franklin Kinnaman, David L. Valentine, and Tina Treude
Biogeosciences, 21, 789–809, https://doi.org/10.5194/bg-21-789-2024, https://doi.org/10.5194/bg-21-789-2024, 2024
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Declining oxygen (O2) concentrations in coastal oceans can threaten people’s ways of life and food supplies. Here, we investigate how mats of bacteria that proliferate on the seafloor of the Santa Barbara Basin sustain and potentially worsen these O2 depletion events through their unique chemoautotrophic metabolism. Our study shows how changes in seafloor microbiology and geochemistry brought on by declining O2 concentrations can help these mats grow as well as how that growth affects the basin.
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Short summary
Selenium (Se) is an essential micronutrient for many organisms. Our knowledge of dissolved Se biogeochemical cycling in tropical estuaries is limited. We have found that dissolved organic Se (DOSe) was the major speciation in the peat-draining rivers and estuaries. The DOSe fractions may be associated with high molecular weight peatland-derived carbon compounds and may photodegrade to more bioavailable forms once transported to oligotrophic coastal water, where they may promote productivity.
Selenium (Se) is an essential micronutrient for many organisms. Our knowledge of dissolved Se...
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