Articles | Volume 19, issue 3
Biogeosciences, 19, 831–843, 2022
https://doi.org/10.5194/bg-19-831-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Biogeosciences, 19, 831–843, 2022
https://doi.org/10.5194/bg-19-831-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
10 Feb 2022
Research article
| 10 Feb 2022
The biogeographic pattern of microbial communities inhabiting terrestrial mud volcanoes across the Eurasian continent
Tzu-Hsuan Tu et al.
Related authors
No articles found.
Alessandro Gattuso, Francesco Italiano, Giorgio Capasso, Antonino D'Alessandro, Fausto Grassa, Antonino Fabio Pisciotta, and Davide Romano
Nat. Hazards Earth Syst. Sci., 21, 3407–3419, https://doi.org/10.5194/nhess-21-3407-2021, https://doi.org/10.5194/nhess-21-3407-2021, 2021
Short summary
Short summary
Santa Barbara and Aragona are affected by mud volcanism with episodic hazardous paroxysm events. Two potentially hazardous paroxysm exposed surfaces of 0.12 and 0.20 km2 were elaborated with DSMs and with historical information on the paroxysms that occurred in the past. This paper, in the end, could be a useful tool for civil protection authorities in order to take appropriate risk mitigation measurements for exposed people and for monitoring activities.
Marco Cuffaro, Andrea Billi, Sabina Bigi, Alessandro Bosman, Cinzia G. Caruso, Alessia Conti, Andrea Corbo, Antonio Costanza, Giuseppe D'Anna, Carlo Doglioni, Paolo Esestime, Gioacchino Fertitta, Luca Gasperini, Francesco Italiano, Gianluca Lazzaro, Marco Ligi, Manfredi Longo, Eleonora Martorelli, Lorenzo Petracchini, Patrizio Petricca, Alina Polonia, and Tiziana Sgroi
Solid Earth, 10, 741–763, https://doi.org/10.5194/se-10-741-2019, https://doi.org/10.5194/se-10-741-2019, 2019
Short summary
Short summary
The Ionian Sea in southern Italy is at the center of active convergence between the Eurasian and African plates, with many known
Mw > 7.0 earthquakes. Here, a recently discovered mud volcano (called the Bortoluzzi Mud Volcano or BMV) was surveyed during the Seismofaults 2017 cruise (May 2017). The BMV is the active emergence of crustal fluids probably squeezed up during the seismic cycle. As such, the BMV may potentially be used to track the seismic cycle of active faults.
T. L. Kieft, T. C. Onstott, L. Ahonen, V. Aloisi, F. S. Colwell, B. Engelen, S. Fendrihan, E. Gaidos, U. Harms, I. Head, J. Kallmeyer, B. Kiel Reese, L.-H. Lin, P. E. Long, D. P. Moser, H. Mills, P. Sar, D. Schulze-Makuch, H. Stan-Lotter, D. Wagner, P.-L. Wang, F. Westall, and M. J. Wilkins
Sci. Dril., 19, 43–53, https://doi.org/10.5194/sd-19-43-2015, https://doi.org/10.5194/sd-19-43-2015, 2015
C. Xu, J. B. H. Shyu, and X. Xu
Nat. Hazards Earth Syst. Sci., 14, 1789–1818, https://doi.org/10.5194/nhess-14-1789-2014, https://doi.org/10.5194/nhess-14-1789-2014, 2014
Related subject area
Biodiversity and Ecosystem Function: Terrestrial
Observed water and light limitation across global ecosystems
A question of scale: modeling biomass, gain and mortality distributions of a tropical forest
Seed traits and phylogeny explain plants' geographic distribution
Effect of the presence of plateau pikas on the ecosystem services of alpine meadows
Allometric equations and wood density parameters for estimating aboveground and woody debris biomass in Cajander larch (Larix cajanderi) forests of northeast Siberia
Strong influence of trees outside forest in regulating microclimate of intensively modified Afromontane landscapes
Excess radiation exacerbates drought stress impacts on canopy conductance along aridity gradients
Dispersal of bacteria and stimulation of permafrost decomposition by Collembola
Modeling the effects of alternative crop–livestock management scenarios on important ecosystem services for smallholder farming from a landscape perspective
Contrasting strategies of nutrient demand and use between savanna and forest ecosystems in a neotropical transition zone
Monitoring post-fire recovery of various vegetation biomes using multi-wavelength satellite remote sensing
Updated estimation of forest biomass carbon pools in China, 1977–2018
Estimating dry biomass and plant nitrogen concentration in pre-Alpine grasslands with low-cost UAS-borne multispectral data – a comparison of sensors, algorithms, and predictor sets
Fire in lichen-rich subarctic tundra changes carbon and nitrogen cycling between ecosystem compartments but has minor effects on stocks
Mass concentration measurements of autumn bioaerosol using low-cost sensors in a mature temperate woodland free-air carbon dioxide enrichment (FACE) experiment: investigating the role of meteorology and carbon dioxide levels
Phosphorus stress strongly reduced plant physiological activity, but only temporarily, in a mesocosm experiment with Zea mays colonized by arbuscular mycorrhizal fungi
Main drivers of plant diversity patterns of rubber plantations in the Greater Mekong Subregion
Importance of the forest state in estimating biomass losses from tropical forests: combining dynamic forest models and remote sensing
Examining the role of environmental memory in the predictability of carbon and water fluxes across Australian ecosystems
Water uptake patterns of pea and barley responded to drought but not to cropping systems
Geodiversity and biodiversity on a volcanic island: the role of scattered phonolites for plant diversity and performance
The role of cover crops for cropland soil carbon, nitrogen leaching, and agricultural yields – a global simulation study with LPJmL (V. 5.0-tillage-cc)
Thirty-eight years of CO2 fertilization has outpaced growing aridity to drive greening of Australian woody ecosystems
Net soil carbon balance in afforested peatlands and separating autotrophic and heterotrophic soil CO2 effluxes
Bioaerosols and atmospheric ice nuclei in a Mediterranean dryland: community changes related to rainfall
Strong temporal variation in treefall and branchfall rates in a tropical forest is related to extreme rainfall: results from 5 years of monthly drone data for a 50 ha plot
Nitrogen restricts future sub-arctic treeline advance in an individual-based dynamic vegetation model
Spatial patterns of aboveground phytogenic Si stocks in a grass-dominated catchment – results from UAS-based high-resolution remote sensing
Patterns in recent and Holocene pollen accumulation rates across Europe – the Pollen Monitoring Programme Database as a tool for vegetation reconstruction
Capturing functional strategies and compositional dynamics in vegetation demographic models
Drought effects on leaf fall, leaf flushing and stem growth in the Amazon forest: reconciling remote sensing data and field observations
Variable tree rooting strategies are key for modelling the distribution, productivity and evapotranspiration of tropical evergreen forests
The motion of trees in the wind: a data synthesis
The importance of antecedent vegetation and drought conditions as global drivers of burnt area
Evaluating the potential for Haloarchaea to serve as ice nucleating particles
A survey of proximal methods for monitoring leaf phenology in temperate deciduous forests
Recent above-ground biomass changes in central Chukotka (Russian Far East) using field sampling and Landsat satellite data
Climate change and elevated CO2 favor forest over savanna under different future scenarios in South Asia
Functional convergence of biosphere–atmosphere interactions in response to meteorological conditions
Multi-scale assessment of a grassland productivity model
Improving the monitoring of deciduous broadleaf phenology using the Geostationary Operational Environmental Satellite (GOES) 16 and 17
Factors controlling the productivity of tropical Andean forests: climate and soil are more important than tree diversity
Drought years in peatland rewetting: rapid vegetation succession can maintain the net CO2 sink function
Shift of seed mass and fruit type spectra along longitudinal gradient: high water availability and growth allometry
Retrieval and validation of forest background reflectivity from daily Moderate Resolution Imaging Spectroradiometer (MODIS) bidirectional reflectance distribution function (BRDF) data across European forests
Unraveling the physical and physiological basis for the solar- induced chlorophyll fluorescence and photosynthesis relationship using continuous leaf and canopy measurements of a corn crop
Machine learning estimates of eddy covariance carbon flux in a scrub in the Mexican highland
Variability of the surface energy balance in permafrost-underlain boreal forest
Vegetation modulates the impact of climate extremes on gross primary production
Landsat near-infrared (NIR) band and ELM-FATES sensitivity to forest disturbances and regrowth in the Central Amazon
François Jonard, Andrew F. Feldman, Daniel J. Short Gianotti, and Dara Entekhabi
Biogeosciences, 19, 5575–5590, https://doi.org/10.5194/bg-19-5575-2022, https://doi.org/10.5194/bg-19-5575-2022, 2022
Short summary
Short summary
We investigate the spatial and temporal patterns of light and water limitation in plant function at the ecosystem scale. Using satellite observations, we characterize the nonlinear relationships between sun-induced chlorophyll fluorescence (SIF) and water and light availability. This study highlights that soil moisture limitations on SIF are found primarily in drier environments, while light limitations are found in intermediately wet regions.
Nikolai Knapp, Sabine Attinger, and Andreas Huth
Biogeosciences, 19, 4929–4944, https://doi.org/10.5194/bg-19-4929-2022, https://doi.org/10.5194/bg-19-4929-2022, 2022
Short summary
Short summary
The biomass of forests is determined by forest growth and mortality. These quantities can be estimated with different methods such as inventories, remote sensing and modeling. These methods are usually being applied at different spatial scales. The scales influence the obtained frequency distributions of biomass, growth and mortality. This study suggests how to transfer between scales, when using forest models of different complexity for a tropical forest.
Kai Chen, Kevin S. Burgess, Fangliang He, Xiang-Yun Yang, Lian-Ming Gao, and De-Zhu Li
Biogeosciences, 19, 4801–4810, https://doi.org/10.5194/bg-19-4801-2022, https://doi.org/10.5194/bg-19-4801-2022, 2022
Short summary
Short summary
Why does plants' distributional range size vary enormously? This study provides evidence that seed mass, intraspecific seed mass variation, seed dispersal mode and phylogeny contribute to explaining species distribution variation on a geographic scale. Our study clearly shows the importance of including seed life-history traits in modeling and predicting the impact of climate change on species distribution of seed plants.
Ying Ying Chen, Huan Yang, Gen Sheng Bao, Xiao Pan Pang, and Zheng Gang Guo
Biogeosciences, 19, 4521–4532, https://doi.org/10.5194/bg-19-4521-2022, https://doi.org/10.5194/bg-19-4521-2022, 2022
Short summary
Short summary
Investigating the effect of the presence of plateau pikas on ecosystem services of alpine meadows is helpful to understand the role of the presence of small mammalian herbivores in grasslands. The results of this study showed that the presence of plateau pikas led to higher biodiversity conservation, soil nitrogen and phosphorus maintenance, and carbon sequestration of alpine meadows, whereas it led to lower forage available to livestock and water conservation of alpine meadows.
Clement Jean Frédéric Delcourt and Sander Veraverbeke
Biogeosciences, 19, 4499–4520, https://doi.org/10.5194/bg-19-4499-2022, https://doi.org/10.5194/bg-19-4499-2022, 2022
Short summary
Short summary
This study provides new equations that can be used to estimate aboveground tree biomass in larch-dominated forests of northeast Siberia. Applying these equations to 53 forest stands in the Republic of Sakha (Russia) resulted in significantly larger biomass stocks than when using existing equations. The data presented in this work can help refine biomass estimates in Siberian boreal forests. This is essential to assess changes in boreal vegetation and carbon dynamics.
Iris Johanna Aalto, Eduardo Eiji Maeda, Janne Heiskanen, Eljas Kullervo Aalto, and Petri Kauko Emil Pellikka
Biogeosciences, 19, 4227–4247, https://doi.org/10.5194/bg-19-4227-2022, https://doi.org/10.5194/bg-19-4227-2022, 2022
Short summary
Short summary
Tree canopies are strong moderators of understory climatic conditions. In tropical areas, trees cool down the microclimates. Using remote sensing and field measurements we show how even intermediate canopy cover and agroforestry trees contributed to buffering the hottest temperatures in Kenya. The cooling effect was the greatest during hot days and in lowland areas, where the ambient temperatures were high. Adopting agroforestry practices in the area could assist in mitigating climate change.
Jing Wang and Xuefa Wen
Biogeosciences, 19, 4197–4208, https://doi.org/10.5194/bg-19-4197-2022, https://doi.org/10.5194/bg-19-4197-2022, 2022
Short summary
Short summary
Excess radiation and low temperatures exacerbate drought impacts on canopy conductance (Gs) among transects. The primary determinant of drought stress on Gs was soil moisture on the Loess Plateau (LP) and the Mongolian Plateau (MP), whereas it was the vapor pressure deficit on the Tibetan Plateau (TP). Radiation exhibited a negative effect on Gs via drought stress within transects, while temperature had negative effects on stomatal conductance on the TP but no effect on the LP and MP.
Sylvain Monteux, Janine Mariën, and Eveline J. Krab
Biogeosciences, 19, 4089–4105, https://doi.org/10.5194/bg-19-4089-2022, https://doi.org/10.5194/bg-19-4089-2022, 2022
Short summary
Short summary
Quantifying the feedback from the decomposition of thawing permafrost soils is crucial to establish adequate climate warming mitigation scenarios. Past efforts have focused on abiotic and to some extent microbial drivers of decomposition but not biotic drivers such as soil fauna. We added soil fauna (Collembola Folsomia candida) to permafrost, which introduced bacterial taxa without affecting bacterial communities as a whole but increased CO2 production (+12 %), presumably due to priming.
Mirjam Pfeiffer, Munir P. Hoffmann, Simon Scheiter, William Nelson, Johannes Isselstein, Kingsley Ayisi, Jude J. Odhiambo, and Reimund Rötter
Biogeosciences, 19, 3935–3958, https://doi.org/10.5194/bg-19-3935-2022, https://doi.org/10.5194/bg-19-3935-2022, 2022
Short summary
Short summary
Smallholder farmers face challenges due to poor land management and climate change. We linked the APSIM crop model and the aDGVM2 vegetation model to investigate integrated management options that enhance ecosystem functions and services. Sustainable intensification moderately increased yields. Crop residue grazing reduced feed gaps but not for dry-to-wet season transitions. Measures to improve soil water and nutrient status are recommended. Landscape-level ecosystem management is essential.
Marina Corrêa Scalon, Imma Oliveras Menor, Renata Freitag, Karine S. Peixoto, Sami W. Rifai, Beatriz Schwantes Marimon, Ben Hur Marimon Junior, and Yadvinder Malhi
Biogeosciences, 19, 3649–3661, https://doi.org/10.5194/bg-19-3649-2022, https://doi.org/10.5194/bg-19-3649-2022, 2022
Short summary
Short summary
We investigated dynamic nutrient flow and demand in a typical savanna and a transition forest to understand how similar soils and the same climate dominated by savanna vegetation can also support forest-like formations. Savanna relied on nutrient resorption from wood, and nutrient demand was equally partitioned between leaves, wood and fine roots. Transition forest relied on resorption from the canopy biomass and nutrient demand was predominantly driven by leaves.
Emma Bousquet, Arnaud Mialon, Nemesio Rodriguez-Fernandez, Stéphane Mermoz, and Yann Kerr
Biogeosciences, 19, 3317–3336, https://doi.org/10.5194/bg-19-3317-2022, https://doi.org/10.5194/bg-19-3317-2022, 2022
Short summary
Short summary
Pre- and post-fire values of four climate variables and four vegetation variables were analysed at the global scale, in order to observe (i) the general fire likelihood factors and (ii) the vegetation recovery trends over various biomes. The main result of this study is that L-band vegetation optical depth (L-VOD) is the most impacted vegetation variable and takes the longest to recover over dense forests. L-VOD could then be useful for post-fire vegetation recovery studies.
Chen Yang, Yue Shi, Wenjuan Sun, Jiangling Zhu, Chengjun Ji, Yuhao Feng, Suhui Ma, Zhaodi Guo, and Jingyun Fang
Biogeosciences, 19, 2989–2999, https://doi.org/10.5194/bg-19-2989-2022, https://doi.org/10.5194/bg-19-2989-2022, 2022
Short summary
Short summary
Quantifying China's forest biomass C pool is important in understanding C cycling in forests. However, most of studies on forest biomass C pool were limited to the period of 2004–2008. Here, we used a biomass expansion factor method to estimate C pool from 1977 to 2018. The results suggest that afforestation practices, forest growth, and environmental changes were the main drivers of increased C sink. Thus, this study provided an essential basis for achieving China's C neutrality target.
Anne Schucknecht, Bumsuk Seo, Alexander Krämer, Sarah Asam, Clement Atzberger, and Ralf Kiese
Biogeosciences, 19, 2699–2727, https://doi.org/10.5194/bg-19-2699-2022, https://doi.org/10.5194/bg-19-2699-2022, 2022
Short summary
Short summary
Actual maps of grassland traits could improve local farm management and support environmental assessments. We developed, assessed, and applied models to estimate dry biomass and plant nitrogen (N) concentration in pre-Alpine grasslands with drone-based multispectral data and canopy height information. Our results indicate that machine learning algorithms are able to estimate both parameters but reach a better level of performance for biomass.
Ramona J. Heim, Andrey Yurtaev, Anna Bucharova, Wieland Heim, Valeriya Kutskir, Klaus-Holger Knorr, Christian Lampei, Alexandr Pechkin, Dora Schilling, Farid Sulkarnaev, and Norbert Hölzel
Biogeosciences, 19, 2729–2740, https://doi.org/10.5194/bg-19-2729-2022, https://doi.org/10.5194/bg-19-2729-2022, 2022
Short summary
Short summary
Fires will probably increase in Arctic regions due to climate change. Yet, the long-term effects of tundra fires on carbon (C) and nitrogen (N) stocks and cycling are still unclear. We investigated the long-term fire effects on C and N stocks and cycling in soil and aboveground living biomass.
We found that tundra fires did not affect total C and N stocks because a major part of the stocks was located belowground in soils which were largely unaltered by fire.
Aileen B. Baird, Edward J. Bannister, A. Robert MacKenzie, and Francis D. Pope
Biogeosciences, 19, 2653–2669, https://doi.org/10.5194/bg-19-2653-2022, https://doi.org/10.5194/bg-19-2653-2022, 2022
Short summary
Short summary
Forest environments contain a wide variety of airborne biological particles (bioaerosols) important for plant and animal health and biosphere–atmosphere interactions. Using low-cost sensors and a free-air carbon dioxide enrichment (FACE) experiment, we monitor the impact of enhanced CO2 on airborne particles. No effect of the enhanced CO2 treatment on total particle concentrations was observed, but a potential suppression of high concentration bioaerosol events was detected under enhanced CO2.
Melanie S. Verlinden, Hamada AbdElgawad, Arne Ven, Lore T. Verryckt, Sebastian Wieneke, Ivan A. Janssens, and Sara Vicca
Biogeosciences, 19, 2353–2364, https://doi.org/10.5194/bg-19-2353-2022, https://doi.org/10.5194/bg-19-2353-2022, 2022
Short summary
Short summary
Zea mays grows in mesocosms with different soil nutrition levels. At low phosphorus (P) availability, leaf physiological activity initially decreased strongly. P stress decreased over the season. Arbuscular mycorrhizal fungi (AMF) symbiosis increased over the season. AMF symbiosis is most likely responsible for gradual reduction in P stress.
Guoyu Lan, Bangqian Chen, Chuan Yang, Rui Sun, Zhixiang Wu, and Xicai Zhang
Biogeosciences, 19, 1995–2005, https://doi.org/10.5194/bg-19-1995-2022, https://doi.org/10.5194/bg-19-1995-2022, 2022
Short summary
Short summary
Little is known about the impact of rubber plantations on diversity of the Great Mekong Subregion. In this study, we uncovered latitudinal gradients of plant diversity of rubber plantations. Exotic species with high dominance result in loss of plant diversity of rubber plantations. Not all exotic species would reduce plant diversity of rubber plantations. Much more effort should be made to balance agricultural production with conservation goals in this region.
Ulrike Hiltner, Andreas Huth, and Rico Fischer
Biogeosciences, 19, 1891–1911, https://doi.org/10.5194/bg-19-1891-2022, https://doi.org/10.5194/bg-19-1891-2022, 2022
Short summary
Short summary
Quantifying biomass loss rates due to stem mortality is important for estimating the role of tropical forests in the global carbon cycle. We analyse the consequences of long-term elevated stem mortality for tropical forest dynamics and biomass loss. Based on simulations, we developed a statistical model to estimate biomass loss rates of forests in different successional states from forest attributes. Assuming a doubling of tree mortality, biomass loss increased from 3.2 % yr-1 to 4.5 % yr-1.
Jon Cranko Page, Martin G. De Kauwe, Gab Abramowitz, Jamie Cleverly, Nina Hinko-Najera, Mark J. Hovenden, Yao Liu, Andy J. Pitman, and Kiona Ogle
Biogeosciences, 19, 1913–1932, https://doi.org/10.5194/bg-19-1913-2022, https://doi.org/10.5194/bg-19-1913-2022, 2022
Short summary
Short summary
Although vegetation responds to climate at a wide range of timescales, models of the land carbon sink often ignore responses that do not occur instantly. In this study, we explore the timescales at which Australian ecosystems respond to climate. We identified that carbon and water fluxes can be modelled more accurately if we include environmental drivers from up to a year in the past. The importance of antecedent conditions is related to ecosystem aridity but is also influenced by other factors.
Qing Sun, Valentin H. Klaus, Raphaël Wittwer, Yujie Liu, Marcel G. A. van der Heijden, Anna K. Gilgen, and Nina Buchmann
Biogeosciences, 19, 1853–1869, https://doi.org/10.5194/bg-19-1853-2022, https://doi.org/10.5194/bg-19-1853-2022, 2022
Short summary
Short summary
Drought is one of the biggest challenges for future food production globally. During a simulated drought, pea and barley mainly relied on water from shallow soil depths, independent of different cropping systems.
David Kienle, Anna Walentowitz, Leyla Sungur, Alessandro Chiarucci, Severin D. H. Irl, Anke Jentsch, Ole R. Vetaas, Richard Field, and Carl Beierkuhnlein
Biogeosciences, 19, 1691–1703, https://doi.org/10.5194/bg-19-1691-2022, https://doi.org/10.5194/bg-19-1691-2022, 2022
Short summary
Short summary
Volcanic islands consist mainly of basaltic rocks. Additionally, there are often occurrences of small phonolite rocks differing in color and surface. On La Palma (Canary Islands), phonolites appear to be more suitable for plants than the omnipresent basalts. Therefore, we expected phonolites to be species-rich with larger plant individuals compared to the surrounding basaltic areas. Indeed, as expected, we found more species on phonolites and larger plant individuals in general.
Vera Porwollik, Susanne Rolinski, Jens Heinke, Werner von Bloh, Sibyll Schaphoff, and Christoph Müller
Biogeosciences, 19, 957–977, https://doi.org/10.5194/bg-19-957-2022, https://doi.org/10.5194/bg-19-957-2022, 2022
Short summary
Short summary
The study assesses impacts of grass cover crop cultivation on cropland during main-crop off-season periods applying the global vegetation model LPJmL (V.5.0-tillage-cc). Compared to simulated bare-soil fallowing practices, cover crops led to increased soil carbon content and reduced nitrogen leaching rates on the majority of global cropland. Yield responses of main crops following cover crops vary with location, duration of altered management, crop type, water regime, and tillage practice.
Sami W. Rifai, Martin G. De Kauwe, Anna M. Ukkola, Lucas A. Cernusak, Patrick Meir, Belinda E. Medlyn, and Andy J. Pitman
Biogeosciences, 19, 491–515, https://doi.org/10.5194/bg-19-491-2022, https://doi.org/10.5194/bg-19-491-2022, 2022
Short summary
Short summary
Australia's woody ecosystems have experienced widespread greening despite a warming climate and repeated record-breaking droughts and heat waves. Increasing atmospheric CO2 increases plant water use efficiency, yet quantifying the CO2 effect is complicated due to co-occurring effects of global change. Here we harmonized a 38-year satellite record to separate the effects of climate change, land use change, and disturbance to quantify the CO2 fertilization effect on the greening phenomenon.
Renée Hermans, Rebecca McKenzie, Roxane Andersen, Yit Arn Teh, Neil Cowie, and Jens-Arne Subke
Biogeosciences, 19, 313–327, https://doi.org/10.5194/bg-19-313-2022, https://doi.org/10.5194/bg-19-313-2022, 2022
Short summary
Short summary
Peatlands are a significant global carbon store, which can be compromised by drainage and afforestation. We measured the peat decomposition under a 30-year-old drained forest plantation: 115 ± 16 g C m−2 yr−1, ca. 40 % of total soil respiration. Considering input of litter from trees, our results indicate that the soils in these 30-year-old drained and afforested peatlands are a net sink for C, since substantially more C enters the soil as organic matter than is decomposed heterotrophically.
Kai Tang, Beatriz Sánchez-Parra, Petya Yordanova, Jörn Wehking, Anna T. Backes, Daniel A. Pickersgill, Stefanie Maier, Jean Sciare, Ulrich Pöschl, Bettina Weber, and Janine Fröhlich-Nowoisky
Biogeosciences, 19, 71–91, https://doi.org/10.5194/bg-19-71-2022, https://doi.org/10.5194/bg-19-71-2022, 2022
Short summary
Short summary
Metagenomic sequencing and freezing experiments of aerosol samples collected on Cyprus revealed rain-related short-term changes of bioaerosol and ice nuclei composition. Filtration experiments showed a rain-related enhancement of biological ice nuclei > 5 µm and < 0.1 µm. The observed effects of rainfall on the composition of atmospheric bioaerosols and ice nuclei may influence the hydrological cycle as well as the health effects of air particulate matter (pathogens, allergens).
Raquel Fernandes Araujo, Samuel Grubinger, Carlos Henrique Souza Celes, Robinson I. Negrón-Juárez, Milton Garcia, Jonathan P. Dandois, and Helene C. Muller-Landau
Biogeosciences, 18, 6517–6531, https://doi.org/10.5194/bg-18-6517-2021, https://doi.org/10.5194/bg-18-6517-2021, 2021
Short summary
Short summary
Our study contributed to improving the understanding of temporal variation and climate correlates of canopy disturbances mainly caused by treefalls and branchfalls. We used a unique dataset of 5 years of approximately monthly drone-acquired RGB (red–green–blue) imagery for 50 ha of mature tropical forest on Barro Colorado Island, Panama. We found that canopy disturbance rates were highly temporally variable, were higher in the wet season, and were related to extreme rainfall events.
Adrian Gustafson, Paul A. Miller, Robert G. Björk, Stefan Olin, and Benjamin Smith
Biogeosciences, 18, 6329–6347, https://doi.org/10.5194/bg-18-6329-2021, https://doi.org/10.5194/bg-18-6329-2021, 2021
Short summary
Short summary
We performed model simulations of vegetation change for a historic period and a range of climate change scenarios at a high spatial resolution. Projected treeline advance continued at the same or increased rates compared to our historic simulation. Temperature isotherms advanced faster than treelines, revealing a lag in potential vegetation shifts that was modulated by nitrogen availability. At the year 2100 projected treelines had advanced by 45–195 elevational metres depending on the scenario.
Marc Wehrhan, Daniel Puppe, Danuta Kaczorek, and Michael Sommer
Biogeosciences, 18, 5163–5183, https://doi.org/10.5194/bg-18-5163-2021, https://doi.org/10.5194/bg-18-5163-2021, 2021
Short summary
Short summary
UAS remote sensing provides a promising tool for new insights into Si biogeochemistry at catchment scale. Our study on an artificial catchment shows surprisingly high silicon stocks in the biomass of two grass species (C. epigejos, 7 g m−2; P. australis, 27 g m−2). The distribution of initial sediment properties (clay, Tiron-extractable Si, nitrogen, plant-available potassium) controlled the spatial distribution of C. epigejos. Soil wetness determined the occurrence of P. australis.
Vojtěch Abraham, Sheila Hicks, Helena Svobodová-Svitavská, Elissaveta Bozilova, Sampson Panajiotidis, Mariana Filipova-Marinova, Christin Eldegard Jensen, Spassimir Tonkov, Irena Agnieszka Pidek, Joanna Święta-Musznicka, Marcelina Zimny, Eliso Kvavadze, Anna Filbrandt-Czaja, Martina Hättestrand, Nurgül Karlıoğlu Kılıç, Jana Kosenko, Maria Nosova, Elena Severova, Olga Volkova, Margrét Hallsdóttir, Laimdota Kalniņa, Agnieszka M. Noryśkiewicz, Bożena Noryśkiewicz, Heather Pardoe, Areti Christodoulou, Tiiu Koff, Sonia L. Fontana, Teija Alenius, Elisabeth Isaksson, Heikki Seppä, Siim Veski, Anna Pędziszewska, Martin Weiser, and Thomas Giesecke
Biogeosciences, 18, 4511–4534, https://doi.org/10.5194/bg-18-4511-2021, https://doi.org/10.5194/bg-18-4511-2021, 2021
Short summary
Short summary
We present a continental dataset of pollen accumulation rates (PARs) collected by pollen traps. This absolute measure of pollen rain (grains cm−2 yr−1) has a positive relationship to current vegetation and latitude. Trap and fossil PARs have similar values within one region, so it opens up possibilities for using fossil PARs to reconstruct past changes in plant biomass and primary productivity. The dataset is available in the Neotoma Paleoecology Database.
Polly C. Buotte, Charles D. Koven, Chonggang Xu, Jacquelyn K. Shuman, Michael L. Goulden, Samuel Levis, Jessica Katz, Junyan Ding, Wu Ma, Zachary Robbins, and Lara M. Kueppers
Biogeosciences, 18, 4473–4490, https://doi.org/10.5194/bg-18-4473-2021, https://doi.org/10.5194/bg-18-4473-2021, 2021
Short summary
Short summary
We present an approach for ensuring the definitions of plant types in dynamic vegetation models are connected to the underlying ecological processes controlling community composition. Our approach can be applied regionally or globally. Robust resolution of community composition will allow us to use these models to address important questions related to future climate and management effects on plant community composition, structure, carbon storage, and feedbacks within the Earth system.
Thomas Janssen, Ype van der Velde, Florian Hofhansl, Sebastiaan Luyssaert, Kim Naudts, Bart Driessen, Katrin Fleischer, and Han Dolman
Biogeosciences, 18, 4445–4472, https://doi.org/10.5194/bg-18-4445-2021, https://doi.org/10.5194/bg-18-4445-2021, 2021
Short summary
Short summary
Satellite images show that the Amazon forest has greened up during past droughts. Measurements of tree stem growth and leaf litterfall upscaled using machine-learning algorithms show that leaf flushing at the onset of a drought results in canopy rejuvenation and green-up during drought while simultaneously trees excessively shed older leaves and tree stem growth declines. Canopy green-up during drought therefore does not necessarily point to enhanced tree growth and improved forest health.
Boris Sakschewski, Werner von Bloh, Markus Drüke, Anna Amelia Sörensson, Romina Ruscica, Fanny Langerwisch, Maik Billing, Sarah Bereswill, Marina Hirota, Rafael Silva Oliveira, Jens Heinke, and Kirsten Thonicke
Biogeosciences, 18, 4091–4116, https://doi.org/10.5194/bg-18-4091-2021, https://doi.org/10.5194/bg-18-4091-2021, 2021
Short summary
Short summary
This study shows how local adaptations of tree roots across tropical and sub-tropical South America explain patterns of biome distribution, productivity and evapotranspiration on this continent. By allowing for high diversity of tree rooting strategies in a dynamic global vegetation model (DGVM), we are able to mechanistically explain patterns of mean rooting depth and the effects on ecosystem functions. The approach can advance DGVMs and Earth system models.
Toby D. Jackson, Sarab Sethi, Ebba Dellwik, Nikolas Angelou, Amanda Bunce, Tim van Emmerik, Marine Duperat, Jean-Claude Ruel, Axel Wellpott, Skip Van Bloem, Alexis Achim, Brian Kane, Dominick M. Ciruzzi, Steven P. Loheide II, Ken James, Daniel Burcham, John Moore, Dirk Schindler, Sven Kolbe, Kilian Wiegmann, Mark Rudnicki, Victor J. Lieffers, John Selker, Andrew V. Gougherty, Tim Newson, Andrew Koeser, Jason Miesbauer, Roger Samelson, Jim Wagner, Anthony R. Ambrose, Andreas Detter, Steffen Rust, David Coomes, and Barry Gardiner
Biogeosciences, 18, 4059–4072, https://doi.org/10.5194/bg-18-4059-2021, https://doi.org/10.5194/bg-18-4059-2021, 2021
Short summary
Short summary
We have all seen trees swaying in the wind, but did you know that this motion can teach us about ecology? We summarized tree motion data from many different studies and looked for similarities between trees. We found that the motion of trees in conifer forests is quite similar to each other, whereas open-grown trees and broadleaf forests show more variation. It has been suggested that additional damping or amplification of tree motion occurs at high wind speeds, but we found no evidence of this.
Alexander Kuhn-Régnier, Apostolos Voulgarakis, Peer Nowack, Matthias Forkel, I. Colin Prentice, and Sandy P. Harrison
Biogeosciences, 18, 3861–3879, https://doi.org/10.5194/bg-18-3861-2021, https://doi.org/10.5194/bg-18-3861-2021, 2021
Short summary
Short summary
Along with current climate, vegetation, and human influences, long-term accumulation of biomass affects fires. Here, we find that including the influence of antecedent vegetation and moisture improves our ability to predict global burnt area. Additionally, the length of the preceding period which needs to be considered for accurate predictions varies across regions.
Jessie M. Creamean, Julio E. Ceniceros, Lilyanna Newman, Allyson D. Pace, Thomas C. J. Hill, Paul J. DeMott, and Matthew E. Rhodes
Biogeosciences, 18, 3751–3762, https://doi.org/10.5194/bg-18-3751-2021, https://doi.org/10.5194/bg-18-3751-2021, 2021
Short summary
Short summary
Microorganisms have the unique ability to form ice in clouds at relatively warm temperatures, especially specific types of plant bacteria. However, to date, members of the domain Archaea have not been evaluated for their cloud-forming capabilities. Here, we show the first results of Haloarchaea that have the ability to form cloud ice at moderate supercooled temperatures that are found in hypersaline environments on Earth.
Kamel Soudani, Nicolas Delpierre, Daniel Berveiller, Gabriel Hmimina, Jean-Yves Pontailler, Lou Seureau, Gaëlle Vincent, and Éric Dufrêne
Biogeosciences, 18, 3391–3408, https://doi.org/10.5194/bg-18-3391-2021, https://doi.org/10.5194/bg-18-3391-2021, 2021
Short summary
Short summary
We present an exhaustive comparative survey of eight proximal methods to estimate forest phenology. We focused on methodological aspects and thoroughly assessed deviations between predicted and observed phenological dates and pointed out their main causes. We show that proximal methods provide robust phenological metrics. They can be used to retrieve long-term phenological series at flux measurement sites and help interpret the interannual variability and trends of mass and energy exchanges.
Iuliia Shevtsova, Ulrike Herzschuh, Birgit Heim, Luise Schulte, Simone Stünzi, Luidmila A. Pestryakova, Evgeniy S. Zakharov, and Stefan Kruse
Biogeosciences, 18, 3343–3366, https://doi.org/10.5194/bg-18-3343-2021, https://doi.org/10.5194/bg-18-3343-2021, 2021
Short summary
Short summary
In the light of climate changes in subarctic regions, notable general increase in above-ground biomass for the past 15 years (2000 to 2017) was estimated along a tundra–taiga gradient of central Chukotka (Russian Far East). The greatest increase occurred in the northern taiga in the areas of larch closed-canopy forest expansion with Cajander larch as a main contributor. For the estimations, we used field data (taxa-separated plant biomass, 2018) and upscaled it based on Landsat satellite data.
Dushyant Kumar, Mirjam Pfeiffer, Camille Gaillard, Liam Langan, and Simon Scheiter
Biogeosciences, 18, 2957–2979, https://doi.org/10.5194/bg-18-2957-2021, https://doi.org/10.5194/bg-18-2957-2021, 2021
Short summary
Short summary
In this paper, we investigated the impact of climate change and rising CO2 on biomes using a vegetation model in South Asia, an often neglected region in global modeling studies. Understanding these impacts guides ecosystem management and biodiversity conservation. Our results indicate that savanna regions are at high risk of woody encroachment and transitioning into the forest, and the bioclimatic envelopes of biomes need adjustments to account for shifts caused by climate change and CO2.
Christopher Krich, Mirco Migliavacca, Diego G. Miralles, Guido Kraemer, Tarek S. El-Madany, Markus Reichstein, Jakob Runge, and Miguel D. Mahecha
Biogeosciences, 18, 2379–2404, https://doi.org/10.5194/bg-18-2379-2021, https://doi.org/10.5194/bg-18-2379-2021, 2021
Short summary
Short summary
Ecosystems and the atmosphere interact with each other. These interactions determine e.g. the water and carbon fluxes and thus are crucial to understand climate change effects. We analysed the interactions for many ecosystems across the globe, showing that very different ecosystems can have similar interactions with the atmosphere. Meteorological conditions seem to be the strongest interaction-shaping factor. This means that common principles can be identified to describe ecosystem behaviour.
Shawn D. Taylor and Dawn M. Browning
Biogeosciences, 18, 2213–2220, https://doi.org/10.5194/bg-18-2213-2021, https://doi.org/10.5194/bg-18-2213-2021, 2021
Short summary
Short summary
Grasslands in North America provide multiple ecosystem services and drive the production of a lot of grain, beef, and other staples. We evaluated a grassland productivity model using nearly 500 years of grassland camera data and found the areas where the model worked well and locations where it did not. Long-term productivity projections for the suitable locations can be made immediately with the current model, while other areas, such as the southwest, will need further model development.
Kathryn I. Wheeler and Michael C. Dietze
Biogeosciences, 18, 1971–1985, https://doi.org/10.5194/bg-18-1971-2021, https://doi.org/10.5194/bg-18-1971-2021, 2021
Short summary
Short summary
Monitoring leaf phenology (i.e., seasonality) allows for tracking the progression of climate change and seasonal variations in a variety of organismal and ecosystem processes. Recent versions of the Geostationary Operational Environmental Satellites allow for the monitoring of a phenological-sensitive index at a high temporal frequency (5–10 min) throughout most of the western hemisphere. Here we show the high potential of these new data to measure the phenology of deciduous forests.
Jürgen Homeier and Christoph Leuschner
Biogeosciences, 18, 1525–1541, https://doi.org/10.5194/bg-18-1525-2021, https://doi.org/10.5194/bg-18-1525-2021, 2021
Short summary
Short summary
We studied aboveground productivity in humid tropical montane old-growth forests in two highly diverse Andean regions with large geological and topographic heterogeneity and related productivity to tree diversity and climatic, edaphic and stand structural factors. From our results we conclude that the productivity of highly diverse Neotropical montane forests is primarily controlled by thermal and edaphic factors and stand structural properties, while tree diversity is of minor importance.
Florian Beyer, Florian Jansen, Gerald Jurasinski, Marian Koch, Birgit Schröder, and Franziska Koebsch
Biogeosciences, 18, 917–935, https://doi.org/10.5194/bg-18-917-2021, https://doi.org/10.5194/bg-18-917-2021, 2021
Short summary
Short summary
Increasing drought frequency can jeopardize the restoration of the CO2 sink function in degraded peatlands. We explored the effect of the summer drought in 2018 on vegetation development and CO2 exchange in a rewetted fen. Drought triggered a rapid spread of new vegetation whose CO2 assimilation could partially outweigh the drought-related rise in respiratory CO2 loss. Our study shows important regulatory mechanisms of a rewetted fen to maintain its net CO2 sink function even in a very dry year.
Shunli Yu, Guoxun Wang, Ofir Katz, Danfeng Li, Qibing Wang, Ming Yue, and Canran Liu
Biogeosciences, 18, 655–667, https://doi.org/10.5194/bg-18-655-2021, https://doi.org/10.5194/bg-18-655-2021, 2021
Short summary
Short summary
As key traits of plants, the mechanisms of diversity of fruit sizes and seed sizes have not been solved completely until now. Therefore, the research related to them will continue to be done in the future. Our research, combined with future works, will provide a profound basis for solving the origin of fleshy-fruited species and seed size diversity.
Jan Pisek, Angela Erb, Lauri Korhonen, Tobias Biermann, Arnaud Carrara, Edoardo Cremonese, Matthias Cuntz, Silvano Fares, Giacomo Gerosa, Thomas Grünwald, Niklas Hase, Michal Heliasz, Andreas Ibrom, Alexander Knohl, Johannes Kobler, Bart Kruijt, Holger Lange, Leena Leppänen, Jean-Marc Limousin, Francisco Ramon Lopez Serrano, Denis Loustau, Petr Lukeš, Lars Lundin, Riccardo Marzuoli, Meelis Mölder, Leonardo Montagnani, Johan Neirynck, Matthias Peichl, Corinna Rebmann, Eva Rubio, Margarida Santos-Reis, Crystal Schaaf, Marius Schmidt, Guillaume Simioni, Kamel Soudani, and Caroline Vincke
Biogeosciences, 18, 621–635, https://doi.org/10.5194/bg-18-621-2021, https://doi.org/10.5194/bg-18-621-2021, 2021
Short summary
Short summary
Understory vegetation is the most diverse, least understood component of forests worldwide. Understory communities are important drivers of overstory succession and nutrient cycling. Multi-angle remote sensing enables us to describe surface properties by means that are not possible when using mono-angle data. Evaluated over an extensive set of forest ecosystem experimental sites in Europe, our reported method can deliver good retrievals, especially over different forest types with open canopies.
Peiqi Yang, Christiaan van der Tol, Petya K. E. Campbell, and Elizabeth M. Middleton
Biogeosciences, 18, 441–465, https://doi.org/10.5194/bg-18-441-2021, https://doi.org/10.5194/bg-18-441-2021, 2021
Short summary
Short summary
Solar-induced chlorophyll fluorescence (SIF) has the potential to facilitate the monitoring of photosynthesis from space. This study presents a systematic analysis of the physical and physiological meaning of the relationship between fluorescence and photosynthesis at both leaf and canopy levels. We unravel the individual effects of incoming light, vegetation structure and leaf physiology and highlight their joint effects on the relationship between canopy fluorescence and photosynthesis.
Aurelio Guevara-Escobar, Enrique González-Sosa, Mónica Cervantes-Jiménez, Humberto Suzán-Azpiri, Mónica Elisa Queijeiro-Bolaños, Israel Carrillo-Ángeles, and Víctor Hugo Cambrón-Sandoval
Biogeosciences, 18, 367–392, https://doi.org/10.5194/bg-18-367-2021, https://doi.org/10.5194/bg-18-367-2021, 2021
Short summary
Short summary
All vegetation types can sequester carbon dioxide. We compared ground measurements (eddy covariance) with remotely sensed data (Moderate Resolution Imaging Spectroradiometer, MODIS) and machine learning ensembles of primary production in a semiarid scrub in Mexico. The annual carbon sink for this vegetation type was −283.5 g C m−2 y−1; MODIS underestimated the primary productivity, and the machine learning modeling was better locally.
Simone Maria Stuenzi, Julia Boike, William Cable, Ulrike Herzschuh, Stefan Kruse, Luidmila A. Pestryakova, Thomas Schneider von Deimling, Sebastian Westermann, Evgenii S. Zakharov, and Moritz Langer
Biogeosciences, 18, 343–365, https://doi.org/10.5194/bg-18-343-2021, https://doi.org/10.5194/bg-18-343-2021, 2021
Short summary
Short summary
Boreal forests in eastern Siberia are an essential component of global climate patterns. We use a physically based model and field measurements to study the interactions between forests, permanently frozen ground and the atmosphere. We find that forests exert a strong control on the thermal state of permafrost through changing snow cover dynamics and altering the surface energy balance, through absorbing most of the incoming solar radiation and suppressing below-canopy turbulent fluxes.
Milan Flach, Alexander Brenning, Fabian Gans, Markus Reichstein, Sebastian Sippel, and Miguel D. Mahecha
Biogeosciences, 18, 39–53, https://doi.org/10.5194/bg-18-39-2021, https://doi.org/10.5194/bg-18-39-2021, 2021
Short summary
Short summary
Drought and heat events affect the uptake and sequestration of carbon in terrestrial ecosystems. We study the impact of droughts and heatwaves on the uptake of CO2 of different vegetation types at the global scale. We find that agricultural areas are generally strongly affected. Forests instead are not particularly sensitive to the events under scrutiny. This implies different water management strategies of forests but also a lack of sensitivity to remote-sensing-derived vegetation activity.
Robinson I. Negrón-Juárez, Jennifer A. Holm, Boris Faybishenko, Daniel Magnabosco-Marra, Rosie A. Fisher, Jacquelyn K. Shuman, Alessandro C. de Araujo, William J. Riley, and Jeffrey Q. Chambers
Biogeosciences, 17, 6185–6205, https://doi.org/10.5194/bg-17-6185-2020, https://doi.org/10.5194/bg-17-6185-2020, 2020
Short summary
Short summary
The temporal variability in the Landsat satellite near-infrared (NIR) band captured the dynamics of forest regrowth after disturbances in Central Amazon. This variability was represented by the dynamics of forest regrowth after disturbances were properly represented by the ELM-FATES model (Functionally Assembled Terrestrial Ecosystem Simulator (FATES) in the Energy Exascale Earth System Model (E3SM) Land Model (ELM)).
Cited articles
Allison, P. A. and Pye, K.: Early diagenetic mineralization and fossil
Preservation in modern carbonate concretions, Palaios, 9, 561–575,
https://doi.org/10.2307/3515128, 1994.
Astorga, A., Oksanen, J., Luoto, M., Soininen, J., Virtanen, R., and Muotka,
T.: Distance decay of similarity in freshwater communities: Do macro- and
microorganisms follow the same rules?, Global Ecol. Biogeogr., 21, 365–375,
https://doi.org/10.1111/j.1466-8238.2011.00681.x, 2012.
Beal, E. J., House, C. H., and Orphan, V. J.: Manganese- and iron-dependent
marine methane oxidation, Science, 325, 184–187,
https://doi.org/10.1126/science.1169984, 2009.
Bolyen, E., Rideout, J. R., Dillon, M. R., et al.: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2, Nat. Biotechnol., 37, 852–857, https://doi.org/10.1038/s41587-019-0209-9, 2019.
Borrel, G., Adam, P. S., McKay, L. J., Chen, L.-X., Sierra-García, I.
N., Sieber, C. M. K., Letourneur, Q., Ghozlane, A., Andersen, G. L., Li,
W.-J., Hallam, S. J., Muyzer, G., Oliveira, V. M. de, Inskeep, W. P.,
Banfield, J. F., and Gribaldo, S.: Wide diversity of methane and short-chain
alkane metabolisms in uncultured archaea, Nat. Microbiol., 4, 603–613,
https://doi.org/10.1038/s41564-019-0363-3, 2019.
Bray, J. R. and Curtis, J. T.: An ordination of the upland forest
communities of southern Wisconsin, Ecol. Monogr., 27, 325–349, 1957.
Canfield, D. E.: Reactive iron in marine sediments, Geochim. Cosmochim. Ac.,
53, 619–632, https://doi.org/10.1016/0016-7037(89)90005-7, 1989.
Chang, Y.-H., Cheng, T.-W., Lai, W.-J., Tsai, W.-Y., Sun, C.-H., Lin, L.-H.,
and Wang, P.-L.: Microbial methane cycling in a terrestrial mud volcano in
eastern Taiwan, Environ. Microbiol., 14, 895–908,
https://doi.org/10.1111/j.1462-2920.2011.02658.x, 2012.
Chen, N.-C., Yang, T. F., Hong, W.-L., Yu, T.-L., Lin, I.-T., Wang, P.-L.,
Lin, S., Su, C.-C., Shen, C.-C., Wang, Y., and Lin, L.-H.: Discharge of
deeply rooted fluids from submarine mud volcanism in the Taiwan accretionary
prism, Sci. Rep.-UK, 10, 381, https://doi.org/10.1038/s41598-019-57250-9, 2020.
Cheng, T.-W., Chang, Y.-H., Tang, S.-L., Tseng, C.-H., Chiang, P.-W., Chang,
K.-T., Sun, C.-H., Chen, Y.-G., Kuo, H.-C., Wang, C.-H., Chu, P.-H., Song,
S.-R., Wang, P.-L., and Lin, L.-H.: Metabolic stratification driven by
surface and subsurface interactions in a terrestrial mud volcano, ISME J.,
6, 2280–2290, https://doi.org/10.1038/ismej.2012.61, 2012.
Chiu, Y.-P.: Microbial community structure and methane cycling in mud
volcanoes of Sicily, Italy, MS thesis, National Taiwan University, Taiwan,
137 pp., https://hdl.handle.net/11296/9j6jqr (last access: 5 February 2022), 2015.
Claypool, G. E. and Kvenvolden, K. A.: Methane and other hydrocarbon gases
in marine sediment, Annu. Rev. Earth Pl. Sc., 11, 299–327,
https://doi.org/10.1146/annurev.ea.11.050183.001503, 1983.
Comte, J., Monier, A., Crevecoeur, S., Lovejoy, C., and Vincent, W. F.:
Microbial biogeography of permafrost thaw ponds across the changing northern
landscape, Ecography, 39, 609–618, https://doi.org/10.1111/ecog.01667, 2016.
Condit, R., Pitman, N., Leigh, E. G., Chave, J., Terborgh, J., Foster, R.
B., Núñez, P., Aguilar, S., Valencia, R., Villa, G., Muller-Landau,
H. C., Losos, E., and Hubbell, S. P.: Beta-diversity in tropical forest
trees, Science, 295, 666–669, https://doi.org/10.1126/science.1066854,
2002.
DasSarma, S. and DasSarma, P.: Halophiles, in: eLS, John Wiley & Sons, Ltd, 1–13,
https://doi.org/10.1002/9780470015902.a0000394.pub4, 2001.
Dice, L. R.: Measures of the amount of ecologic association between species,
Ecology, 26, 297–302, https://doi.org/10.2307/1932409, 1945.
Dimitrov, L. I.: Mud volcanoes – the most important pathway for degassing
deeply buried sediments, Earth-Sci. Rev., 59, 49–76, 2002.
Etiope, G., Ciotoli, G., Schwietzke, S., and Schoell, M.: Gridded maps of geological methane emissions and their isotopic signature, Earth Syst. Sci. Data, 11, 1–22, https://doi.org/10.5194/essd-11-1-2019, 2019.
Ettwig, K. F., Zhu, B., Speth, D., Keltjens, J. T., Jetten, M. S. M., and
Kartal, B.: Archaea catalyze iron-dependent anaerobic oxidation of methane,
P. Natl. Acad. Sci. USA, 113, 12792–12796, https://doi.org/10.1073/pnas.1609534113, 2016.
Grant, W. D.: Life at low water activity, Philos. T. R. Soc. Lon. B, 359, 1249–1267,
https://doi.org/10.1098/rstb.2004.1502, 2004.
Halevy, I., Peters, S. E., and Fischer, W. W.: Sulfate Burial Constraints on
the Phanerozoic Sulfur Cycle, Science, 337, 331–334,
https://doi.org/10.1126/science.1220224, 2012.
Hanson, C. A., Fuhrman, J. A., Horner-Devine, M. C., and Martiny, J. B. H.:
Beyond biogeographic patterns: processes shaping the microbial landscape,
Nat. Rev. Microbiol, 10, 497–506, https://doi.org/10.1038/nrmicro2795, 2012.
Haroon, M. F., Hu, S., Shi, Y., Imelfort, M., Keller, J., Hugenholtz, P.,
Yuan, Z., and Tyson, G. W.: Anaerobic oxidation of methane coupled to
nitrate reduction in a novel archaeal lineage, Nature, 500, 567–570, 2013.
Hill, M. O.: Diversity and evenness: a unifying notation and its
consequences, Ecology, 54, 427–432, 1973.
Hutchison, D. W. and Templeton, A. R.: Correlation of pairwise genetic and
geographic distance measures: inferring the relative influences of gene flow
and drift on the distribution of genetic variability, Evolution, 53,
1898–1914, 1999.
Inagaki, F., Nunoura, T., Nakagawa, S., Teske, A., Lever, M., Lauer, A.,
Suzuki, M., Takai, K., Delwiche, M., Colwell, F. S., Nealson, K. H.,
Horikoshi, K., D'Hondt, S., and Jørgensen, B. B.: Biogeographical
distribution and diversity of microbes in methane hydrate-bearing deep
marine sediments on the Pacific Ocean Margin, P. Natl. Acad. Sci. USA, 103, 2815–2820,
https://doi.org/10.1073/pnas.0511033103, 2006.
Jørgensen, S. L., Hannisdal, B., Lanzen, A., Baumberger, T., Flesland,
K., Fonseca, R., Ovreås, L., Steen, I. H., Thorseth, I. H., Pedersen, R.
B., and Schleper, C.: Correlating microbial community profiles with
geochemical data in highly stratified sediments from the Arctic Mid-Ocean
Ridge, P. Natl. Acad. Sci. USA, 109, E2846–E2855, https://doi.org/10.1073/pnas.1207574109, 2012.
Kahle, D. and Wickham, H.: ggmap: Spatial visualization with ggplot2, R J.,
5, 144–161, https://doi.org/10.32614/rj-2013-014, 2013.
Knittel, K. and Boetius, A.: Anaerobic oxidation of methane: progress with
an unknown process, Annu. Rev. Microbiol., 63, 311–334,
https://doi.org/10.1146/annurev.micro.61.080706.093130, 2009.
Kuever, J.: The family Desulfobulbaceae, in: The Prokaryotes, edited by: Rosenberg, E., DeLong, E., Lory, S., Stackebrandt E., and Thompson, F., Springer, Berlin, Heidelberg, Germany, 75–86, https://doi.org/10.1007/978-3-642-39044-9_270, 2014.
Lin, Y.-T., Tu, T.-H., Wei, C.-L., Rumble, D., Lin, L.-H., and Wang, P.-L.:
Steep redox gradient and biogeochemical cycling driven by deeply sourced
fluids and gases in a terrestrial mud volcano, FEMS Microbiol. Ecol., 94,
3796, https://doi.org/10.1093/femsec/fiy171, 2018.
Liu, X., Li, M., Castelle, C. J., Probst, A. J., Zhou, Z., Pan, J., Liu, Y.,
Banfield, J. F., and Gu, J.-D.: Insights into the ecology, evolution, and
metabolism of the widespread Woesearchaeotal lineages, Microbiome, 6, 102,
https://doi.org/10.1186/s40168-018-0488-2, 2018.
Lomolino, M. V., Riddle, B. R., and Brown, J. H. (Eds.): Biogeography, 3rd Edn., Sinauer
Associates, Inc., ISBN 10-08-7893-486-3, 2006.
Martiny, J. B. H., Eisen, J. A., Penn, K., Allison, S. D., and
Horner-Devine, M. C.: Drivers of bacterial beta-diversity depend on spatial
scale, P. Natl. Acad. Sci. USA, 108, 7850–7854, https://doi.org/10.1073/pnas.1016308108,
2011.
Mazzini, A. and Etiope, G.: Mud volcanism: An updated review, Earth-Sci.
Rev., 168, 81–112, https://doi.org/10.1016/j.earscirev.2017.03.001, 2017.
McGenity, T. J.: Halophilic hydrocarbon degraders, in: Handbook of hydrocarbon and lipid microbiology, edited by: Timmis, K. N., Springer, Berlin, Heidelberg, Germany, 1939–1951, https://doi.org/10.1007/978-3-540-77587-4_142, 2010.
McIlroy, S. J. and Nielsen, P. H.: The family Saprospiraceae, in: The Prokaryotes, edited by: Rosenberg, E., DeLong, E. F., Lory, S., Stackebrandt, E., and Thompson F., Springer, Berlin, Heidelberg, Germany, 863–889, https://doi.org/10.1007/978-3-642-38954-2_138, 2014.
Mori, J. F., Chen, L.-X., Jessen, G. L., Rudderham, S. B., McBeth, J. M.,
Lindsay, M. B. J., Slater, G. F., Banfield, J. F., and Warren, L. A.:
Putative mixotrophic nitrifying-denitrifying Gammaproteobacteria implicated
in nitrogen cycling within the ammonia/oxygen transition zone of an oil
sands pit lake, Front. Microbiol., 10, 2435,
https://doi.org/10.3389/fmicb.2019.02435, 2019.
Müller, A. L., Rezende, J. R. de, Hubert, C. R. J., Kjeldsen, K. U.,
Lagkouvardos, I., Berry, D., Jørgensen, B. B., and Loy, A.: Endospores of
thermophilic bacteria as tracers of microbial dispersal by ocean currents.,
ISME J., 8, 1153–1165, https://doi.org/10.1038/ismej.2013.225, 2014.
Nekola, J. C. and White, P. S.: The distance decay of similarity in
biogeography and ecology, J. Biogeogr., 26, 867–878, 1999.
Ning, D., Deng, Y., Tiedje, J. M., and Zhou, J.: A general framework for
quantitatively assessing ecological stochasticity, P. Natl. Acad. Sci. USA, 116, 16892–16898,
https://doi.org/10.1073/pnas.1904623116, 2019.
Or, D., Smets, B. F., Wraith, J. M., Dechesne, A., and Friedman, S. P.:
Physical constraints affecting bacterial habitats and activity in
unsaturated porous media – a review, Adv. Water Resour., 30, 1505–1527,
https://doi.org/10.1016/j.advwatres.2006.05.025, 2007.
Orcutt, B. N., Sylvan, J. B., Knab, N. J., and Edwards, K. J.: Microbial
ecology of the dark ocean above, at, and below the seafloor, Microbiol.
Mol. Biol. R., 75, 361–422, https://doi.org/10.1128/mmbr.00039-10, 2011.
Oren, A.: The family Halobacteriaceae, in: The Prokaryotes, edited by: Rosenberg, E., DeLong, E. F., Lory, S., Stackebrandt, E., and Thompson, F., Springer, Berlin, Heidelberg, Germany, 41–121, https://doi.org/10.1007/978-3-642-38954-2_313, 2014.
Orphan, V. J., Hinrichs, K.-U., Ussler, W., Paull, C. K., Taylor, L. T.,
Sylva, S. P., Hayes, J. M., and DeLong, E. F.: Comparative analysis of
methane-oxidizing archaea and sulfate-reducing bacteria in anoxic marine
sediments, Appl. Environ. Microb., 67, 1922–1934, 2001.
Paulson, J. N., Stine, O. C., Bravo, H. C., and Pop, M.: Differential
abundance analysis for microbial marker-gene surveys, Nat. Methods, 10,
1200–1222, https://doi.org/10.1038/nmeth.2658, 2013.
Petro, C., Starnawski, P., Schramm, A., and Kjeldsen, K. U.: Microbial
community assembly in marine sediments, Aquat. Microb. Ecol., 79, 177–195,
https://doi.org/10.3354/ame01826, 2017.
Power, J. F., Carere, C. R., Lee, C. K., Wakerley, G. L. J., Evans, D. W.,
Button, M., White, D., Climo, M. D., Hinze, A. M., Morgan, X. C., McDonald,
I. R., Cary, S. C., and Stott, M. B.: Microbial biogeography of 925
geothermal springs in New Zealand, Nat. Commun., 9, 3152,
https://doi.org/10.1038/s41467-018-05020-y, 2018.
Ranjard, L., Dequiedt, S., Prévost-Bouré, N. C., Thioulouse, J.,
Saby, N. P. A., Lelievre, M., Maron, P. A., Morin, F. E. R., Bispo, A.,
Jolivet, C., Arrouays, D., and Lemanceau, P.: Turnover of soil bacterial
diversity driven by wide-scale environmental heterogeneity, Nat. Commun.,
4, 1434, https://doi.org/10.1038/ncomms2431, 2013.
Ruff, S. E., Biddle, J. F., Teske, A. P., Knittel, K., Boetius, A., and
Ramette, A.: Global dispersion and local diversification of the methane seep
microbiome, P. Natl. Acad. Sci. USA, 112, 4015–4020, https://doi.org/10.1073/pnas.1421865112,
2015.
Scheller, S., Yu, H., Chadwick, G. L., McGlynn, S. E., and Orphan, V. J.:
Artificial electron acceptors decouple archaeal methane oxidation from
sulfate reduction, Science, 351, 703–707,
https://doi.org/10.1126/science.aad7154, 2016.
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M.,
Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., and
Robinson, C. J.: Introducing mothur: open-source, platform-independent,
community-supported software for describing and comparing microbial
communities, Appl. Environ. Microb., 75, 7537–7541, 2009.
Slatkin, M.: Isolation by distance in eqilibrium and non-equilibrium
populations, Evolution, 47, 264–279,
https://doi.org/10.1111/j.1558-5646.1993.tb01215.x, 1993.
Sorokin, D. Y., Merkel, A. Y., and Muyzer, G.: Thiohalorhabdus, in Bergey's manual of systematics of archaea and bacteria (1–6), edited by: Trujillo, M. E., Dedysh, S., DeVos, P., Hedlund, B., Kämpfer, P., Rainey, F. A., and Whitman, W. B., John Wiley & Sons, New York, New Jersey, United States, https://doi.org/10.1002/9781118960608.gbm01940, 2020.
Tu, T.-H., Wu, L.-W., Lin, Y.-S., Imachi, H., Lin, L.-H., and Wang, P.-L.:
Microbial community composition and functional capacity in a terrestrial
ferruginous, sulfate-depleted mud volcano, Front. Microbiol., 8, 2137,
https://doi.org/10.3389/fmicb.2017.02137, 2017.
Tu, T.-H., Chen, L.-L., Chiu, Y.-P., Lin, L.-H., Wu, L.-W., Italiano, F., Shyu, J. B. H., Raisossadat, S. N., and Wang, P.-L.: The biogeographic pattern of microbial communities inhabiting
terrestrial mud volcanoes across the Eurasian continent, Zenodo [data set, code], https://doi.org/10.5281/zenodo.5973870, 2022a.
Tu, T.-H., Chen, L.-L., Chiu, Y.-P., Lin, L.-H., Wu, L.-W., Italiano, F., Shyu, J. B. H., Raisossadat, S. N., and Wang, P.-L.: The biogeographic pattern of microbial communities inhabiting terrestrial mud volcanoes across the Eurasian continent, NCBI [data set], https://www.ncbi.nlm.nih.gov/bioproject/PRJNA560274, last access: 8 February 2022b.
Wang, P.-L., Chiu, Y.-P., Cheng, T.-W., Chang, Y.-H., Tu, W.-X., and Lin,
L.-H.: Spatial variations of community structures and methane cycling across
a transect of Lei-Gong-Hou mud volcanoes in eastern Taiwan, Front.
Microbiol., 5, 2946, https://doi.org/10.3389/fmicb.2014.00121, 2014.
Weber, L., DeForce, E., and Apprill, A.: Optimization of DNA extraction for
advancing coral microbiota investigations, Microbiome, 5, 18,
https://doi.org/10.1186/s40168-017-0229-y, 2017.
Whiticar, M. J.: Carbon and hydrogen isotope systematics of bacterial
formation and oxidation of methane, Chem. Geol., 161, 291–314,
https://doi.org/10.1016/s0009-2541(99)00092-3, 1999.
Yamada, T. and Sekiguchi, Y.: Cultivation of Uncultured Chloroflexi
Subphyla: Significance and Ecophysiology of Formerly Uncultured Chloroflexi
“Subphylum I” with Natural and Biotechnological Relevance, Microbes
Environment, 24, 205–216, https://doi.org/10.1264/jsme2.me09151s, 2009.
Yao, W. and Millero, F. J.: Oxidation of hydrogen sulfide by hydrous Fe(III)
oxides in seawater, Mar. Chem., 52, 1–16,
https://doi.org/10.1016/0304-4203(95)00072-0, 1996.
Zheng, G., Xu, S., Liang, M., Dermatas, D., and Xu, X.: Transformations of
organic carbon and its impact on lead weathering in shooting range soils,
Environ. Earth Sci., 64, 2241–2246,
https://doi.org/10.1007/s12665-011-1052-6, 2011.
Zinger, L., Boetius, A., and Ramette, A.: Bacterial taxa-area and
distance-decay relationships in marine environments, Mol. Ecol., 23,
954–964, https://doi.org/10.1111/mec.12640, 2014.
Short summary
This investigation of microbial biogeography in terrestrial mud volcanoes (MVs) covers study sites over a geographic distance of up to 10 000 km across the Eurasian continent. It compares microbial community compositions' coupling with geochemical data across a 3D space. We demonstrate that stochastic processes operating at continental scales and environmental filtering at local scales drive the formation of patchy habitats and the pattern of diversification for microbes in terrestrial MVs.
This investigation of microbial biogeography in terrestrial mud volcanoes (MVs) covers study...
Altmetrics
Final-revised paper
Preprint