Articles | Volume 21, issue 10
https://doi.org/10.5194/bg-21-2425-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-21-2425-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
22 May 2024
Research article |
| 22 May 2024
| 22 May 2024
Impact of canopy environmental variables on the diurnal dynamics of water and carbon dioxide exchange at leaf and canopy level
Raquel González-Armas
CORRESPONDING AUTHOR
Meteorology and Air Quality Section, Wageningen University Research, 6708 PB Wageningen, the Netherlands
Jordi Vilà-Guerau de Arellano
Meteorology and Air Quality Section, Wageningen University Research, 6708 PB Wageningen, the Netherlands
Atmospheric Chemistry Department, Max Planck Institute for Chemistry, 55128 Mainz, Germany
Mary Rose Mangan
Meteorology and Air Quality Section, Wageningen University Research, 6708 PB Wageningen, the Netherlands
Oscar Hartogensis
Meteorology and Air Quality Section, Wageningen University Research, 6708 PB Wageningen, the Netherlands
Hugo de Boer
Department of Environmental Sciences, Faculty of Geosciences, Utrecht University, 3508 TA Utrecht, the Netherlands
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Ruben B. Schulte, Margreet C. van Zanten, Bart J. H. van Stratum, and Jordi Vilà-Guerau de Arellano
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Carlos Román-Cascón, Marie Lothon, Fabienne Lohou, Oscar Hartogensis, Jordi Vila-Guerau de Arellano, David Pino, Carlos Yagüe, and Eric R. Pardyjak
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Robin Stoffer, Caspar M. van Leeuwen, Damian Podareanu, Valeriu Codreanu, Menno A. Veerman, Martin Janssens, Oscar K. Hartogensis, and Chiel C. van Heerwaarden
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Jordi Vilà-Guerau de Arellano, Patrizia Ney, Oscar Hartogensis, Hugo de Boer, Kevin van Diepen, Dzhaner Emin, Geiske de Groot, Anne Klosterhalfen, Matthias Langensiepen, Maria Matveeva, Gabriela Miranda-García, Arnold F. Moene, Uwe Rascher, Thomas Röckmann, Getachew Adnew, Nicolas Brüggemann, Youri Rothfuss, and Alexander Graf
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Pierre Gentine, Adam Massmann, Benjamin R. Lintner, Sayed Hamed Alemohammad, Rong Fu, Julia K. Green, Daniel Kennedy, and Jordi Vilà-Guerau de Arellano
Hydrol. Earth Syst. Sci., 23, 4171–4197, https://doi.org/10.5194/hess-23-4171-2019, https://doi.org/10.5194/hess-23-4171-2019, 2019
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Hendrik Wouters, Irina Y. Petrova, Chiel C. van Heerwaarden, Jordi Vilà-Guerau de Arellano, Adriaan J. Teuling, Vicky Meulenberg, Joseph A. Santanello, and Diego G. Miralles
Geosci. Model Dev., 12, 2139–2153, https://doi.org/10.5194/gmd-12-2139-2019, https://doi.org/10.5194/gmd-12-2139-2019, 2019
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Rémon M. Saaltink, Maria Barciela-Rial, Thijs van Kessel, Stefan C. Dekker, Hugo J. de Boer, Claire Chassange, Jasper Griffioen, Martin J. Wassen, and Johan C. Winterwerp
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2019-194, https://doi.org/10.5194/hess-2019-194, 2019
Revised manuscript not accepted
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This paper focusses on exploring an alternative approach that uses natural processes, rather than a technological solution, to speed up drainage of soft sediment. In a controlled column experiment, we studied how Phragmites australis can act as an ecological engineer that enhances drainage. The presented results provide information needed for predictive modelling of plants as ecological engineers to speed up soil forming processes in the construction of wetlands with soft cohesive sediment.
Jon Ander Arrillaga, Carlos Yagüe, Carlos Román-Cascón, Mariano Sastre, Maria Antonia Jiménez, Gregorio Maqueda, and Jordi Vilà-Guerau de Arellano
Atmos. Chem. Phys., 19, 4615–4635, https://doi.org/10.5194/acp-19-4615-2019, https://doi.org/10.5194/acp-19-4615-2019, 2019
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Juhi Nagori, Ruud H. H. Janssen, Juliane L. Fry, Maarten Krol, Jose L. Jimenez, Weiwei Hu, and Jordi Vilà-Guerau de Arellano
Atmos. Chem. Phys., 19, 701–729, https://doi.org/10.5194/acp-19-701-2019, https://doi.org/10.5194/acp-19-701-2019, 2019
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Secondary organic aerosol (SOA) is produced through a complex interaction of sunlight, volatile organic compounds emitted from trees, anthropogenic emissions, and atmospheric chemistry. We are able to successfully model the formation and diurnal evolution of SOA using a model that takes into consideration the surface and boundary layer dynamics (1–2 km from the surface) and photochemistry above the southeastern US with data collected during the SOAS campaign to constrain the model.
Metodija M. Shapkalijevski, Huug G. Ouwersloot, Arnold F. Moene, and Jordi Vilà-Guerau de Arrellano
Atmos. Chem. Phys., 17, 1623–1640, https://doi.org/10.5194/acp-17-1623-2017, https://doi.org/10.5194/acp-17-1623-2017, 2017
Hannah Meusel, Uwe Kuhn, Andreas Reiffs, Chinmay Mallik, Hartwig Harder, Monica Martinez, Jan Schuladen, Birger Bohn, Uwe Parchatka, John N. Crowley, Horst Fischer, Laura Tomsche, Anna Novelli, Thorsten Hoffmann, Ruud H. H. Janssen, Oscar Hartogensis, Michael Pikridas, Mihalis Vrekoussis, Efstratios Bourtsoukidis, Bettina Weber, Jos Lelieveld, Jonathan Williams, Ulrich Pöschl, Yafang Cheng, and Hang Su
Atmos. Chem. Phys., 16, 14475–14493, https://doi.org/10.5194/acp-16-14475-2016, https://doi.org/10.5194/acp-16-14475-2016, 2016
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Joan Cuxart, Burkhard Wrenger, Daniel Martínez-Villagrasa, Joachim Reuder, Marius O. Jonassen, Maria A. Jiménez, Marie Lothon, Fabienne Lohou, Oscar Hartogensis, Jens Dünnermann, Laura Conangla, and Anirban Garai
Atmos. Chem. Phys., 16, 9489–9504, https://doi.org/10.5194/acp-16-9489-2016, https://doi.org/10.5194/acp-16-9489-2016, 2016
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Estimations of the effect of thermal advection in the surface energy budget are provided. Data from the experimental campaign BLLAST, held in Southern France in summer 2011, are used, including airborne data by drones and surface-based instrumentation. Model data outputs and satellite information are also inspected. Surface heterogeneities of the order of the kilometer or larger seem to have little effect on the budget, whereas hectometer-scale structures may contribute significantly to it.
Erik Nilsson, Marie Lothon, Fabienne Lohou, Eric Pardyjak, Oscar Hartogensis, and Clara Darbieu
Atmos. Chem. Phys., 16, 8873–8898, https://doi.org/10.5194/acp-16-8873-2016, https://doi.org/10.5194/acp-16-8873-2016, 2016
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A new simple model for turbulence kinetic energy (TKE) and its budget is presented for the sheared convective atmospheric boundary layer. It is used to study effects of buoyancy and shear on TKE evolution during the afternoon transition, especially near the surface. We also find a region of weak turbulence during unstable afternoon conditions below the inversion top, which we refer to as a "pre-residual layer".
Luping Su, Edward G. Patton, Jordi Vilà-Guerau de Arellano, Alex B. Guenther, Lisa Kaser, Bin Yuan, Fulizi Xiong, Paul B. Shepson, Li Zhang, David O. Miller, William H. Brune, Karsten Baumann, Eric Edgerton, Andrew Weinheimer, Pawel K. Misztal, Jeong-Hoo Park, Allen H. Goldstein, Kate M. Skog, Frank N. Keutsch, and John E. Mak
Atmos. Chem. Phys., 16, 7725–7741, https://doi.org/10.5194/acp-16-7725-2016, https://doi.org/10.5194/acp-16-7725-2016, 2016
C. Darbieu, F. Lohou, M. Lothon, J. Vilà-Guerau de Arellano, F. Couvreux, P. Durand, D. Pino, E. G. Patton, E. Nilsson, E. Blay-Carreras, and B. Gioli
Atmos. Chem. Phys., 15, 10071–10086, https://doi.org/10.5194/acp-15-10071-2015, https://doi.org/10.5194/acp-15-10071-2015, 2015
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A case study of the BLLAST experiment is considered to explore the decay of turbulence that occurs in the convective boundary layer over land during the afternoon. Based on observations and on a large-eddy simulation, the analysis reveals two phases in the afternoon: a first quasi-stationary phase when the turbulent kinetic energy slowly decays without significant change in the turbulence structure and a second phase of more rapid decay with a change in spectral turbulence characteristics.
C. Román-Cascón, C. Yagüe, L. Mahrt, M. Sastre, G.-J. Steeneveld, E. Pardyjak, A. van de Boer, and O. Hartogensis
Atmos. Chem. Phys., 15, 9031–9047, https://doi.org/10.5194/acp-15-9031-2015, https://doi.org/10.5194/acp-15-9031-2015, 2015
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Stable-boundary-layer processes have been analysed using BLLAST data. Shallow drainage flows were formed at some locations after the near calm stage of the late afternoon. This stage ended with the arrival of a deeper wind associated with the mountain-plain circulation. At the same time, gravity waves were detected with an array of microbarometers. The interaction of these processes with turbulence was studied through multi-resolution flux decomposition at different sites and heights.
D. van Dinther, C. R. Wood, O. K. Hartogensis, A. Nordbo, and E. J. O'Connor
Atmos. Meas. Tech., 8, 1901–1911, https://doi.org/10.5194/amt-8-1901-2015, https://doi.org/10.5194/amt-8-1901-2015, 2015
H. P. Pietersen, J. Vilà-Guerau de Arellano, P. Augustin, A. van de Boer, O. de Coster, H. Delbarre, P. Durand, M. Fourmentin, B. Gioli, O. Hartogensis, F. Lohou, M. Lothon, H. G. Ouwersloot, D. Pino, and J. Reuder
Atmos. Chem. Phys., 15, 4241–4257, https://doi.org/10.5194/acp-15-4241-2015, https://doi.org/10.5194/acp-15-4241-2015, 2015
M. Combe, J. Vilà-Guerau de Arellano, H. G. Ouwersloot, C. M. J. Jacobs, and W. Peters
Biogeosciences, 12, 103–123, https://doi.org/10.5194/bg-12-103-2015, https://doi.org/10.5194/bg-12-103-2015, 2015
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This study investigates the interactions among the carbon, water and heat cycles above a maize field at the diurnal scale. We couple two land-surface schemes, corresponding to two different modelling approaches, to the same atmospheric boundary-layer (ABL) model. We find the simpler meteorological approach best reproduces the surface and upper-air observations. Finally, we show that the interaction of subsidence with ABL dynamics is key to explain the daytime atmospheric CO2 budget.
M. Lothon, F. Lohou, D. Pino, F. Couvreux, E. R. Pardyjak, J. Reuder, J. Vilà-Guerau de Arellano, P Durand, O. Hartogensis, D. Legain, P. Augustin, B. Gioli, D. H. Lenschow, I. Faloona, C. Yagüe, D. C. Alexander, W. M. Angevine, E Bargain, J. Barrié, E. Bazile, Y. Bezombes, E. Blay-Carreras, A. van de Boer, J. L. Boichard, A. Bourdon, A. Butet, B. Campistron, O. de Coster, J. Cuxart, A. Dabas, C. Darbieu, K. Deboudt, H. Delbarre, S. Derrien, P. Flament, M. Fourmentin, A. Garai, F. Gibert, A. Graf, J. Groebner, F. Guichard, M. A. Jiménez, M. Jonassen, A. van den Kroonenberg, V. Magliulo, S. Martin, D. Martinez, L. Mastrorillo, A. F. Moene, F. Molinos, E. Moulin, H. P. Pietersen, B. Piguet, E. Pique, C. Román-Cascón, C. Rufin-Soler, F. Saïd, M. Sastre-Marugán, Y. Seity, G. J. Steeneveld, P. Toscano, O. Traullé, D. Tzanos, S. Wacker, N. Wildmann, and A. Zaldei
Atmos. Chem. Phys., 14, 10931–10960, https://doi.org/10.5194/acp-14-10931-2014, https://doi.org/10.5194/acp-14-10931-2014, 2014
M. A. Gruber, G. J. Fochesatto, O. K. Hartogensis, and M. Lysy
Atmos. Meas. Tech., 7, 2361–2371, https://doi.org/10.5194/amt-7-2361-2014, https://doi.org/10.5194/amt-7-2361-2014, 2014
E. Blay-Carreras, D. Pino, J. Vilà-Guerau de Arellano, A. van de Boer, O. De Coster, C. Darbieu, O. Hartogensis, F. Lohou, M. Lothon, and H. Pietersen
Atmos. Chem. Phys., 14, 4515–4530, https://doi.org/10.5194/acp-14-4515-2014, https://doi.org/10.5194/acp-14-4515-2014, 2014
J. A. Adame, M. Martínez, M. Sorribas, P. J. Hidalgo, H. Harder, J.-M. Diesch, F. Drewnick, W. Song, J. Williams, V. Sinha, M. A. Hernández-Ceballos, J. Vilà-Guerau de Arellano, R. Sander, Z. Hosaynali-Beygi, H. Fischer, J. Lelieveld, and B. De la Morena
Atmos. Chem. Phys., 14, 2325–2342, https://doi.org/10.5194/acp-14-2325-2014, https://doi.org/10.5194/acp-14-2325-2014, 2014
Related subject area
Biogeophysics: Physical - Biological Coupling
Phytoplankton blooming mechanisms over the East China Sea during post-El Niño summers
Impact of stratiform liquid water clouds on vegetation albedo quantified by coupling an atmosphere and a vegetation radiative transfer model
Technical note: Investigating saline water uptake by roots using spectral induced polarization
Can atmospheric chemistry deposition schemes reliably simulate stomatal ozone flux across global land covers and climates?
Source-to-sink pathways of dissolved organic carbon in the river–estuary–ocean continuum: a modeling investigation
Estimating the variability of deep ocean particle flux collected by sediment traps using satellite data and machine learning
Impact of livestock activity on near-surface ground temperatures in central Mongolian grasslands
Evolution of biogeochemical Properties Inside Poleward Undercurrent Eddies in the Southeast Pacific Ocean
Unique ocean circulation pathways reshape the Indian Ocean oxygen minimum zone with warming
Contribution of the open ocean to the nutrient and phytoplankton inventory in a semi-enclosed coastal sea
The contrasted phytoplankton dynamics across a frontal system in the southwestern Mediterranean Sea
Sub-frontal niches of plankton communities driven by transport and trophic interactions at ocean fronts
Differential feeding habits of the shallow-water hydrothermal vent crab Xenograpsus testudinatus correlate with their resident vent types at a scale of meters
Satellite data reveal earlier and stronger phytoplankton blooms over fronts in the Gulf Stream region
Assimilation of multiple datasets results in large differences in regional- to global-scale NEE and GPP budgets simulated by a terrestrial biosphere model
Spatiotemporal lagging of predictors improves machine learning estimates of atmosphere–forest CO2 exchange
Phytoplankton reaction to an intense storm in the north-western Mediterranean Sea
Lagrangian and Eulerian time and length scales of mesoscale ocean chlorophyll from Bio-Argo floats and satellites
Reply to Lars Olof Björn's comment on “Fundamental molecules of life are pigments which arose and co-evolved as a response to the thermodynamic imperative of dissipating the prevailing solar spectrum” by Michaelian and Simeonov (2015)
Modelling submerged biofouled microplastics and their vertical trajectories
A Bayesian sequential updating approach to predict phenology of silage maize
Using an oceanographic model to investigate the mystery of the missing puerulus
Climate pathways behind phytoplankton-induced atmospheric warming
Impact of moderately energetic fine-scale dynamics on the phytoplankton community structure in the western Mediterranean Sea
Seasonal ecosystem vulnerability to climatic anomalies in the Mediterranean
Grazing behavior and winter phytoplankton accumulation
Episodic subduction patches in the western North Pacific identified from BGC-Argo float data
Do Loop Current eddies stimulate productivity in the Gulf of Mexico?
Quasi-tropical cyclone caused anomalous autumn coccolithophore bloom in the Black Sea
Divergent climate feedbacks on winter wheat growing and dormancy periods as affected by sowing date in the North China Plain
Microclimatic comparison of lichen heaths and shrubs: shrubification generates atmospheric heating but subsurface cooling during the growing season
Fire and vegetation dynamics in northwest Siberia during the last 60 years based on high-resolution remote sensing
Evidence of eddy-related deep-ocean current variability in the northeast tropical Pacific Ocean induced by remote gap winds
Root uptake under mismatched distributions of water and nutrients in the root zone
Interactive impacts of meteorological and hydrological conditions on the physical and biogeochemical structure of a coastal system
Protists and collembolans alter microbial community composition, C dynamics and soil aggregation in simplified consumer–prey systems
Abundance and viability of particle-attached and free-floating bacteria in dusty and nondusty air
Linking tundra vegetation, snow, soil temperature, and permafrost
Drivers of the spatial phytoplankton gradient in estuarine–coastal systems: generic implications of a case study in a Dutch tidal bay
Biological and biogeochemical methods for estimating bioirrigation: a case study in the Oosterschelde estuary
Dissolved inorganic nitrogen and particulate organic nitrogen budget in the Yucatán shelf: driving mechanisms through a physical–biogeochemical coupled model
Basal thermal regime affects the biogeochemistry of subglacial systems
Influence of oceanic conditions in the energy transfer efficiency estimation of a micronekton model
Modulation of the North Atlantic deoxygenation by the slowdown of the nutrient stream
Stand age and species composition effects on surface albedo in a mixedwood boreal forest
Assessing the peatland hummock–hollow classification framework using high-resolution elevation models: implications for appropriate complexity ecosystem modeling
Tidal and seasonal forcing of dissolved nutrient fluxes in reef communities
Ideas and perspectives: Development of nascent autotrophic carbon fixation systems in various redox conditions of the fluid degassing on early Earth
Vertical distribution of chlorophyll in dynamically distinct regions of the southern Bay of Bengal
Remote and local drivers of oxygen and nitrate variability in the shallow oxygen minimum zone off Mauritania in June 2014
Dong-Geon Lee, Ji-Hoon Oh, Jonghun Kam, and Jong-Seong Kug
Biogeosciences, 22, 3165–3180, https://doi.org/10.5194/bg-22-3165-2025, https://doi.org/10.5194/bg-22-3165-2025, 2025
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This study investigates the mechanisms driving anomalous phytoplankton blooms in the East China Sea (ECS) during El Niño decaying summers. The findings highlight three key mechanisms: increased river runoff, nutrient transport through the Taiwan Strait, and wind-driven upwelling, all linked to the western North Pacific anticyclone (WNPAC).
Kevin Wolf, Evelyn Jäkel, André Ehrlich, Michael Schäfer, Hannes Feilhauer, Andreas Huth, Alexandra Weigelt, and Manfred Wendisch
Biogeosciences, 22, 2909–2933, https://doi.org/10.5194/bg-22-2909-2025, https://doi.org/10.5194/bg-22-2909-2025, 2025
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This paper reports an investigation of the influence of clouds on vegetation albedo using a coupled atmosphere–vegetation radiative transfer model. Both models are iteratively linked to simulate cloud–vegetation–radiation interactions over canopies more realistically. Solar, spectral, and broadband irradiances have been simulated under varying cloud conditions. The simulated irradiances were used to investigate the spectral and broadband effect of clouds on vegetation albedo.
Solomon Ehosioke, Sarah Garré, Johan Alexander Huisman, Egon Zimmermann, Mathieu Javaux, and Frédéric Nguyen
Biogeosciences, 22, 2853–2869, https://doi.org/10.5194/bg-22-2853-2025, https://doi.org/10.5194/bg-22-2853-2025, 2025
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Understanding the electromagnetic properties of plant roots is useful to quantify plant properties and monitor plant physiological responses to changing environmental factors. We investigated the electrical properties of the primary roots of Brachypodium and maize plants during the uptake of fresh and saline water using spectral induced polarization. Our results indicate that salinity tolerance varies with the species and that Maize is more tolerant to salinity than Brachypodium.
Tamara Emmerichs, Abdulla Al Mamun, Lisa Emberson, Huiting Mao, Leiming Zhang, Limei Ran, Clara Betancourt, Anthony Wong, Gerbrand Koren, Giacomo Gerosa, Min Huang, and Pierluigi Guaita
EGUsphere, https://doi.org/10.5194/egusphere-2025-429, https://doi.org/10.5194/egusphere-2025-429, 2025
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The risk of ozone pollution to plants is estimated based on the flux through the plant pores which still has uncertainties. In this study, we estimate this quantity with 9 models at different land types worldwide. The input data stems from a database. The models estimated mostly reasonable summertime ozone deposition. The different results of the models varied by land cover which were mostly related to the moisture deficit. This is an important step for assessing the ozone impact on vegetation.
Jialing Yao, Zhi Chen, Jianzhong Ge, and Wenyan Zhang
Biogeosciences, 21, 5435–5455, https://doi.org/10.5194/bg-21-5435-2024, https://doi.org/10.5194/bg-21-5435-2024, 2024
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The transformation of dissolved organic carbon (DOC) in estuaries is vital for coastal carbon cycling. We studied source-to-sink pathways of DOC in the Changjiang Estuary using a physics–biogeochemistry model. Results showed a transition of DOC from a sink to a source in the plume area during summer, with a transition from terrestrial-dominant to marine-dominant DOC. Terrigenous and marine DOC exports account for about 31 % and 69 %, respectively.
Théo Picard, Chelsey A. Baker, Jonathan Gula, Ronan Fablet, Laurent Mémery, and Richard Lampitt
EGUsphere, https://doi.org/10.5194/egusphere-2024-3292, https://doi.org/10.5194/egusphere-2024-3292, 2024
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Ocean sediment traps measure the sequestrated sinking organic carbon. While sinking, the particles are affected by local currents, which presents a challenge in linking the deep flux with the surface. We present a machine learning tool that predicts the source location of the sinking particles based on satellite data. The predictions demonstrate a stronger correlation between surface and deep carbon fluxes, allowing a more comprehensive understanding of the deep carbon sequestration drivers.
Robin Benjamin Zweigel, Avirmed Dashtseren, Khurelbaatar Temuujin, Anarmaa Sharkhuu, Clare Webster, Hanna Lee, and Sebastian Westermann
Biogeosciences, 21, 5059–5077, https://doi.org/10.5194/bg-21-5059-2024, https://doi.org/10.5194/bg-21-5059-2024, 2024
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Intense grazing at grassland sites removes vegetation, reduces the snow cover, and inhibits litter layers from forming. Grazed sites generally have a larger annual ground surface temperature amplitude than ungrazed sites, but the net effect depends on effects in the transitional seasons. Our results also suggest that seasonal use of pastures can reduce ground temperatures, which can be a strategy to protect currently degrading grassland permafrost.
Lenna Oriana Ortiz-Castillo, Oscar Pizarro, Marcela Cornejo-D'Ottone, and Boris Dewitte
EGUsphere, https://doi.org/10.5194/egusphere-2024-1290, https://doi.org/10.5194/egusphere-2024-1290, 2024
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Poleward undercurrent eddies (Puddies) transport a source water mass with low oxygen hundreds of kilometers away from the coast. A simulation based on a physical-biogeochemical model was used to characterize the biogeochemical average conditions inside the Puddies during their lifetime while modifying the conditions in the open sea. Our findings show that the biological activity extends the low oxygen core conditions counteracted by advection processes that tend to ventilate the core.
Sam Ditkovsky, Laure Resplandy, and Julius Busecke
Biogeosciences, 20, 4711–4736, https://doi.org/10.5194/bg-20-4711-2023, https://doi.org/10.5194/bg-20-4711-2023, 2023
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The global ocean is losing oxygen due to warming. The Indian Ocean, however, is gaining oxygen in large parts of the basin, and its naturally occurring oxygen minimum zone is not expanding. This rather unexpected response is explained by the unique ocean circulation of the Indian Ocean, which is bounded by a continent to the north but connected to the Pacific Ocean by the Indonesian Throughflow.
Qian Leng, Xinyu Guo, Junying Zhu, and Akihiko Morimoto
Biogeosciences, 20, 4323–4338, https://doi.org/10.5194/bg-20-4323-2023, https://doi.org/10.5194/bg-20-4323-2023, 2023
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Using a numerical model, we revealed that a large proportion of nutrients in a semi-enclosed sea (Seto Inland Sea, Japan) comes from the Pacific Ocean and supports about half of the phytoplankton growth in the sea. Such results imply that the human-made management of nutrient load from land needs to consider the presence of oceanic nutrients, which act as a background concentration and are not controlled by human activities.
Roxane Tzortzis, Andrea M. Doglioli, Monique Messié, Stéphanie Barrillon, Anne A. Petrenko, Lloyd Izard, Yuan Zhao, Francesco d'Ovidio, Franck Dumas, and Gérald Gregori
Biogeosciences, 20, 3491–3508, https://doi.org/10.5194/bg-20-3491-2023, https://doi.org/10.5194/bg-20-3491-2023, 2023
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We studied a finescale frontal structure in order to highlight its influence on the dynamics and distribution of phytoplankton communities. We computed the growth rates of several phytoplankton groups identified by flow cytometry in two water masses separated by the front. We found contrasted phytoplankton dynamics on the two sides of the front, consistent with the distribution of their abundances. Our study gives new insights into the physical and biological coupling on a finescale front.
Inès Mangolte, Marina Lévy, Clément Haëck, and Mark D. Ohman
Biogeosciences, 20, 3273–3299, https://doi.org/10.5194/bg-20-3273-2023, https://doi.org/10.5194/bg-20-3273-2023, 2023
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Ocean fronts are ecological hotspots, associated with higher diversity and biomass for many marine organisms, from bacteria to whales. Using in situ data from the California Current Ecosystem, we show that far from being limited to the production of diatom blooms, fronts are the scene of complex biophysical couplings between biotic interactions (growth, competition, and predation) and transport by currents that generate planktonic communities with an original taxonomic and spatial structure.
Jing-Ying Wu, Siou-Yan Lin, Jung-Fu Huang, Chen-Tung Arthur Chen, Jia-Jang Hung, Shao-Hung Peng, and Li-Lian Liu
Biogeosciences, 20, 2693–2706, https://doi.org/10.5194/bg-20-2693-2023, https://doi.org/10.5194/bg-20-2693-2023, 2023
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The shallow-water hydrothermal vents off the Kueishan Island, Taiwan, have the most extreme records of pH values (1.52), temperatures (116 °C), and H2S concentrations (172.4 mmol mol−1) in the world. White and yellow vents differ in the color and physical and chemical characteristics of emitted plumes. We found that the feeding habits of the endemic vent crabs (Xenograpsus testudinatus) are adapted to their resident vent types at a distance of 100 m, and the trans-vent movement is uncommon.
Clément Haëck, Marina Lévy, Inès Mangolte, and Laurent Bopp
Biogeosciences, 20, 1741–1758, https://doi.org/10.5194/bg-20-1741-2023, https://doi.org/10.5194/bg-20-1741-2023, 2023
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Phytoplankton vary in abundance in the ocean over large regions and with the seasons but also because of small-scale heterogeneities in surface temperature, called fronts. Here, using satellite imagery, we found that fronts enhance phytoplankton much more where it is already growing well, but despite large local increases the enhancement for the region is modest (5 %). We also found that blooms start 1 to 2 weeks earlier over fronts. These effects may have implications for ecosystems.
Cédric Bacour, Natasha MacBean, Frédéric Chevallier, Sébastien Léonard, Ernest N. Koffi, and Philippe Peylin
Biogeosciences, 20, 1089–1111, https://doi.org/10.5194/bg-20-1089-2023, https://doi.org/10.5194/bg-20-1089-2023, 2023
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The impact of assimilating different dataset combinations on regional to global-scale C budgets is explored with the ORCHIDEE model. Assimilating simultaneously multiple datasets is preferable to optimize the values of the model parameters and avoid model overfitting. The challenges in constraining soil C disequilibrium using atmospheric CO2 data are highlighted for an accurate prediction of the land sink distribution.
Matti Kämäräinen, Juha-Pekka Tuovinen, Markku Kulmala, Ivan Mammarella, Juha Aalto, Henriikka Vekuri, Annalea Lohila, and Anna Lintunen
Biogeosciences, 20, 897–909, https://doi.org/10.5194/bg-20-897-2023, https://doi.org/10.5194/bg-20-897-2023, 2023
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In this study, we introduce a new method for modeling the exchange of carbon between the atmosphere and a study site located in a boreal forest in southern Finland. Our method yields more accurate results than previous approaches in this context. Accurately estimating carbon exchange is crucial for gaining a better understanding of the role of forests in regulating atmospheric carbon and addressing climate change.
Stéphanie Barrillon, Robin Fuchs, Anne A. Petrenko, Caroline Comby, Anthony Bosse, Christophe Yohia, Jean-Luc Fuda, Nagib Bhairy, Frédéric Cyr, Andrea M. Doglioli, Gérald Grégori, Roxane Tzortzis, Francesco d'Ovidio, and Melilotus Thyssen
Biogeosciences, 20, 141–161, https://doi.org/10.5194/bg-20-141-2023, https://doi.org/10.5194/bg-20-141-2023, 2023
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Extreme weather events can have a major impact on ocean physics and biogeochemistry, but their study is challenging. In May 2019, an intense storm occurred in the north-western Mediterranean Sea, during which in situ multi-platform measurements were performed. The results show a strong impact on the surface phytoplankton, highlighting the need for high-resolution measurements coupling physics and biology during these violent events that may become more common in the context of global change.
Darren C. McKee, Scott C. Doney, Alice Della Penna, Emmanuel S. Boss, Peter Gaube, Michael J. Behrenfeld, and David M. Glover
Biogeosciences, 19, 5927–5952, https://doi.org/10.5194/bg-19-5927-2022, https://doi.org/10.5194/bg-19-5927-2022, 2022
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As phytoplankton (small, drifting photosynthetic organisms) drift with ocean currents, biomass accumulation rates should be evaluated in a Lagrangian (observer moves with a fluid parcel) as opposed to an Eulerian (observer is stationary) framework. Here, we use profiling floats and surface drifters combined with satellite data to analyse time and length scales of chlorophyll concentrations (a proxy for biomass) and of velocity to quantify how phytoplankton variability is related to water motion.
Karo Michaelian and Aleksandar Simeonov
Biogeosciences, 19, 4029–4034, https://doi.org/10.5194/bg-19-4029-2022, https://doi.org/10.5194/bg-19-4029-2022, 2022
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We reply to Lars Björn's critique of our article concerning the importance of photon dissipation to the origin and evolution of the biosphere. Björn doubts our assertion that organic pigments, ecosystems, and the biosphere arose out of a non-equilibrium thermodynamic imperative to increase global photon dissipation. He shows that the albedo of some non-living material is less than that of living material. We point out, however, that photon dissipation involves other factors besides albedo.
Reint Fischer, Delphine Lobelle, Merel Kooi, Albert Koelmans, Victor Onink, Charlotte Laufkötter, Linda Amaral-Zettler, Andrew Yool, and Erik van Sebille
Biogeosciences, 19, 2211–2234, https://doi.org/10.5194/bg-19-2211-2022, https://doi.org/10.5194/bg-19-2211-2022, 2022
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Since current estimates show that only about 1 % of the all plastic that enters the ocean is floating at the surface, we look at subsurface processes that can cause vertical movement of (micro)plastic. We investigate how modelled algal attachment and the ocean's vertical movement can cause particles to sink and oscillate in the open ocean. Particles can sink to depths of > 5000 m in regions with high wind intensity and mainly remain close to the surface with low winds and biological activity.
Michelle Viswanathan, Tobias K. D. Weber, Sebastian Gayler, Juliane Mai, and Thilo Streck
Biogeosciences, 19, 2187–2209, https://doi.org/10.5194/bg-19-2187-2022, https://doi.org/10.5194/bg-19-2187-2022, 2022
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We analysed the evolution of model parameter uncertainty and prediction error as we updated parameters of a maize phenology model based on yearly observations, by sequentially applying Bayesian calibration. Although parameter uncertainty was reduced, prediction quality deteriorated when calibration and prediction data were from different maize ripening groups or temperature conditions. The study highlights that Bayesian methods should account for model limitations and inherent data structures.
Jessica Kolbusz, Tim Langlois, Charitha Pattiaratchi, and Simon de Lestang
Biogeosciences, 19, 517–539, https://doi.org/10.5194/bg-19-517-2022, https://doi.org/10.5194/bg-19-517-2022, 2022
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Western rock lobster larvae spend up to 11 months in offshore waters before ocean currents and their ability to swim transport them back to the coast. In 2008, there was a reduction in the number of puerulus (larvae) settling into the fishery. We use an oceanographic model to see how the environment may have contributed to the reduction. Our results show that a combination of effects from local currents and a widespread quiet period in the ocean off WA likely led to less puerulus settlement.
Rémy Asselot, Frank Lunkeit, Philip B. Holden, and Inga Hense
Biogeosciences, 19, 223–239, https://doi.org/10.5194/bg-19-223-2022, https://doi.org/10.5194/bg-19-223-2022, 2022
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Previous studies show that phytoplankton light absorption can warm the atmosphere, but how this warming occurs is still unknown. We compare the importance of air–sea heat versus CO2 flux in the phytoplankton-induced atmospheric warming and determine the main driver. To shed light on this research question, we conduct simulations with a climate model of intermediate complexity. We show that phytoplankton mainly warms the atmosphere by increasing the air–sea CO2 flux.
Roxane Tzortzis, Andrea M. Doglioli, Stéphanie Barrillon, Anne A. Petrenko, Francesco d'Ovidio, Lloyd Izard, Melilotus Thyssen, Ananda Pascual, Bàrbara Barceló-Llull, Frédéric Cyr, Marc Tedetti, Nagib Bhairy, Pierre Garreau, Franck Dumas, and Gérald Gregori
Biogeosciences, 18, 6455–6477, https://doi.org/10.5194/bg-18-6455-2021, https://doi.org/10.5194/bg-18-6455-2021, 2021
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This work analyzes an original high-resolution data set collected in the Mediterranean Sea. The major result is the impact of a fine-scale frontal structure on the distribution of phytoplankton groups, in an area of moderate energy with oligotrophic conditions. Our results provide an in situ confirmation of the findings obtained by previous modeling studies and remote sensing about the structuring effect of the fine-scale ocean dynamics on the structure of the phytoplankton community.
Johannes Vogel, Eva Paton, and Valentin Aich
Biogeosciences, 18, 5903–5927, https://doi.org/10.5194/bg-18-5903-2021, https://doi.org/10.5194/bg-18-5903-2021, 2021
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This study investigates extreme ecosystem impacts evoked by temperature and soil moisture in the Mediterranean Basin for the time span 1999–2019 with a specific focus on seasonal variations. The analysis showed that ecosystem vulnerability is caused by several varying combinations of both drivers during the yearly cycle. The approach presented here helps to provide insights on the specific phenological stage of the year in which ecosystem vulnerability to a certain climatic condition occurs.
Mara Freilich, Alexandre Mignot, Glenn Flierl, and Raffaele Ferrari
Biogeosciences, 18, 5595–5607, https://doi.org/10.5194/bg-18-5595-2021, https://doi.org/10.5194/bg-18-5595-2021, 2021
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Observations reveal that in some regions phytoplankton biomass increases during the wintertime when growth conditions are sub-optimal, which has been attributed to a release from grazing during mixed layer deepening. Measurements of grazer populations to support this theory are lacking. We demonstrate that a release from grazing when the winter mixed layer is deepening holds only for certain grazing models, extending the use of phytoplankton observations to make inferences about grazer dynamics.
Shuangling Chen, Mark L. Wells, Rui Xin Huang, Huijie Xue, Jingyuan Xi, and Fei Chai
Biogeosciences, 18, 5539–5554, https://doi.org/10.5194/bg-18-5539-2021, https://doi.org/10.5194/bg-18-5539-2021, 2021
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Subduction transports surface waters to the oceanic interior, which can supply significant amounts of carbon and oxygen to the twilight zone. Using a novel BGC-Argo dataset covering the western North Pacific, we successfully identified the imprints of episodic shallow subduction patches. These subduction patches were observed mainly in spring and summer (70.6 %), and roughly half of them extended below ~ 450 m, injecting carbon- and oxygen-enriched waters into the ocean interior.
Pierre Damien, Julio Sheinbaum, Orens Pasqueron de Fommervault, Julien Jouanno, Lorena Linacre, and Olaf Duteil
Biogeosciences, 18, 4281–4303, https://doi.org/10.5194/bg-18-4281-2021, https://doi.org/10.5194/bg-18-4281-2021, 2021
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The Gulf of Mexico deep waters are relatively poor in phytoplankton biomass due to low levels of nutrients in the upper layers. Using modeling techniques, we find that the long-living anticyclonic Loop Current eddies that are shed episodically from the Yucatan Channel strongly shape the distribution of phytoplankton and, more importantly, stimulate their growth. This results from the contribution of multiple mechanisms of physical–biogeochemical interactions discussed in this study.
Sergey V. Stanichny, Elena A. Kubryakova, and Arseny A. Kubryakov
Biogeosciences, 18, 3173–3188, https://doi.org/10.5194/bg-18-3173-2021, https://doi.org/10.5194/bg-18-3173-2021, 2021
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In this paper, we show that the short-term impact of tropical cyclones can trigger the intense, long-term bloom of coccolithophores, which are major marine calcifiers playing an important role in the balance and fluxes of inorganic carbon in the ocean. In our paper, we describe the evolution of and physical reasons for such an unusual bloom observed in autumn 2005 in the Black Sea on the basis of satellite data.
Fengshan Liu, Ying Chen, Nini Bai, Dengpan Xiao, Huizi Bai, Fulu Tao, and Quansheng Ge
Biogeosciences, 18, 2275–2287, https://doi.org/10.5194/bg-18-2275-2021, https://doi.org/10.5194/bg-18-2275-2021, 2021
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The sowing date is key to the surface biophysical processes in the winter dormancy period. The climate effect of the sowing date shift is therefore very interesting and may contribute to the mitigation of climate change. An earlier sowing date always had a higher LAI but a higher temperature in the dormancy period and a lower temperature in the growth period. The main reason was the relative contributions of the surface albedo and energy partitioning processes.
Peter Aartsma, Johan Asplund, Arvid Odland, Stefanie Reinhardt, and Hans Renssen
Biogeosciences, 18, 1577–1599, https://doi.org/10.5194/bg-18-1577-2021, https://doi.org/10.5194/bg-18-1577-2021, 2021
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In the literature, it is generally assumed that alpine lichen heaths keep their direct environment cool due to their relatively high albedo. However, we reveal that the soil temperature and soil heat flux are higher below lichens than below shrubs during the growing season, despite a lower net radiation for lichens. We also show that the differences in microclimatic conditions between these two vegetation types are more pronounced during warm and sunny days than during cold and cloudy days.
Oleg Sizov, Ekaterina Ezhova, Petr Tsymbarovich, Andrey Soromotin, Nikolay Prihod'ko, Tuukka Petäjä, Sergej Zilitinkevich, Markku Kulmala, Jaana Bäck, and Kajar Köster
Biogeosciences, 18, 207–228, https://doi.org/10.5194/bg-18-207-2021, https://doi.org/10.5194/bg-18-207-2021, 2021
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In changing climate, tundra is expected to turn into shrubs and trees, diminishing reindeer pasture and increasing risks of tick-borne diseases. However, this transition may require a disturbance. Fires in Siberia are increasingly widespread. We studied wildfire dynamics and tundra–forest transition over 60 years in northwest Siberia near the Arctic Circle. Based on satellite data analysis, we found that transition occurs in 40 %–85 % of burned tundra compared to 5 %–15 % in non-disturbed areas.
Kaveh Purkiani, André Paul, Annemiek Vink, Maren Walter, Michael Schulz, and Matthias Haeckel
Biogeosciences, 17, 6527–6544, https://doi.org/10.5194/bg-17-6527-2020, https://doi.org/10.5194/bg-17-6527-2020, 2020
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There has been a steady increase in interest in mining of deep-sea minerals in the eastern Pacific Ocean recently. The ocean state in this region is known to be highly influenced by rotating bodies of water (eddies), some of which can travel long distances in the ocean and impact the deeper layers of the ocean. Better insight into the variability of eddy activity in this region is of great help to mitigate the impact of the benthic ecosystem from future potential deep-sea mining activity.
Jing Yan, Nathaniel A. Bogie, and Teamrat A. Ghezzehei
Biogeosciences, 17, 6377–6392, https://doi.org/10.5194/bg-17-6377-2020, https://doi.org/10.5194/bg-17-6377-2020, 2020
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An uneven supply of water and nutrients in soils often drives how plants behave. We observed that plants extract all their required nutrients from dry soil patches in sufficient quantity, provided adequate water is available elsewhere in the root zone. Roots in nutrient-rich dry patches facilitate the nutrient acquisition by extensive growth, water release, and modifying water retention in their immediate environment. The findings are valuable in managing nutrient losses in agricultural systems.
Onur Kerimoglu, Yoana G. Voynova, Fatemeh Chegini, Holger Brix, Ulrich Callies, Richard Hofmeister, Knut Klingbeil, Corinna Schrum, and Justus E. E. van Beusekom
Biogeosciences, 17, 5097–5127, https://doi.org/10.5194/bg-17-5097-2020, https://doi.org/10.5194/bg-17-5097-2020, 2020
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In this study, using extensive field observations and a numerical model, we analyzed the physical and biogeochemical structure of a coastal system following an extreme flood event. Our results suggest that a number of anomalous observations were driven by a co-occurrence of peculiar meteorological conditions and increased riverine discharges. Our results call for attention to the combined effects of hydrological and meteorological extremes that are anticipated to increase in frequency.
Amandine Erktan, Matthias C. Rillig, Andrea Carminati, Alexandre Jousset, and Stefan Scheu
Biogeosciences, 17, 4961–4980, https://doi.org/10.5194/bg-17-4961-2020, https://doi.org/10.5194/bg-17-4961-2020, 2020
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Soil aggregation is crucial for soil functioning. While the role of bacteria and fungi in soil aggregation is well established, how predators feeding on microbes modify soil aggregation has hardly been investigated. We showed for the first time that protists modify soil aggregation, presumably through changes in the production of bacterial mucilage, and that collembolans reduce soil aggregation, presumably by reducing the abundance of saprotrophic fungi.
Wei Hu, Kotaro Murata, Chunlan Fan, Shu Huang, Hiromi Matsusaki, Pingqing Fu, and Daizhou Zhang
Biogeosciences, 17, 4477–4487, https://doi.org/10.5194/bg-17-4477-2020, https://doi.org/10.5194/bg-17-4477-2020, 2020
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This paper reports the first estimate of the status of bacteria in long-distance-transported Asian dust, demonstrating that airborne dust, which can carry viable and nonviable bacteria on particle surfaces, is an efficient medium for constantly spreading bacteria at regional and even global scales. Such data are essential to better model and understand the roles and activities of bioaerosols in environmental evolution and climate change and the potential risks of bioaerosols to human health.
Inge Grünberg, Evan J. Wilcox, Simon Zwieback, Philip Marsh, and Julia Boike
Biogeosciences, 17, 4261–4279, https://doi.org/10.5194/bg-17-4261-2020, https://doi.org/10.5194/bg-17-4261-2020, 2020
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Based on topsoil temperature data for different vegetation types at a low Arctic tundra site, we found large small-scale variability. Winter temperatures were strongly influenced by vegetation through its effects on snow. Summer temperatures were similar below most vegetation types and not consistently related to late summer permafrost thaw depth. Given that vegetation type defines the relationship between winter and summer soil temperature and thaw depth, it controls permafrost vulnerability.
Long Jiang, Theo Gerkema, Jacco C. Kromkamp, Daphne van der Wal, Pedro Manuel Carrasco De La Cruz, and Karline Soetaert
Biogeosciences, 17, 4135–4152, https://doi.org/10.5194/bg-17-4135-2020, https://doi.org/10.5194/bg-17-4135-2020, 2020
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A seaward increasing chlorophyll-a gradient is observed during the spring bloom in a Dutch tidal bay. Biophysical model runs indicate the roles of bivalve grazing and tidal import in shaping the gradient. Five common spatial phytoplankton patterns are summarized in global estuarine–coastal ecosystems: seaward increasing, seaward decreasing, concave with a chlorophyll maximum, weak spatial gradients, and irregular patterns.
Emil De Borger, Justin Tiano, Ulrike Braeckman, Tom Ysebaert, and Karline Soetaert
Biogeosciences, 17, 1701–1715, https://doi.org/10.5194/bg-17-1701-2020, https://doi.org/10.5194/bg-17-1701-2020, 2020
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By applying a novel technique to quantify organism-induced sediment–water column fluid exchange (bioirrigation), we show that organisms in subtidal (permanently submerged) areas have similar bioirrigation rates as those that inhabit intertidal areas (not permanently submerged), but organisms in the latter irrigate deeper burrows in this study. Our results expand on traditional methods to quantify bioirrigation rates and broaden the pool of field measurements of bioirrigation rates.
Sheila N. Estrada-Allis, Julio Sheinbaum Pardo, Joao M. Azevedo Correia de Souza, Cecilia Elizabeth Enríquez Ortiz, Ismael Mariño Tapia, and Jorge A. Herrera-Silveira
Biogeosciences, 17, 1087–1111, https://doi.org/10.5194/bg-17-1087-2020, https://doi.org/10.5194/bg-17-1087-2020, 2020
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Continental shelves are the most productive areas in the ocean and can have an important impact on the nutrient cycle as well as the climate system. The one in Yucatán is the largest shelf in the Gulf of Mexico. However, its nutrient budget remains unidentifiable. Here we propose not only a general nutrient budget for the Yucatán Shelf but also the physical processes responsible for its pathway modulation through a physical–biogeochemical coupled model of the whole Gulf of Mexico.
Ashley Dubnick, Martin Sharp, Brad Danielson, Alireza Saidi-Mehrabad, and Joel Barker
Biogeosciences, 17, 963–977, https://doi.org/10.5194/bg-17-963-2020, https://doi.org/10.5194/bg-17-963-2020, 2020
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We found that glaciers with basal temperatures near the melting point mobilize more solutes, nutrients, and microbes from the underlying substrate and are more likely to promote in situ biogeochemical activity than glaciers with basal temperatures well below the melting point. The temperature at the base of glaciers is therefore an important control on the biogeochemistry of ice near glacier beds, and, ultimately, the potential solutes, nutrients, and microbes exported from glaciated watersheds.
Audrey Delpech, Anna Conchon, Olivier Titaud, and Patrick Lehodey
Biogeosciences, 17, 833–850, https://doi.org/10.5194/bg-17-833-2020, https://doi.org/10.5194/bg-17-833-2020, 2020
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Micronekton is an important, yet poorly known, component of the trophic chain, which partly contributes to the storage of CO2 in the deep ocean thanks to biomass vertical migrations. In this study, we characterize the ideal sampling regions to estimate the amount of biomass that undergoes theses migrations. We find that observations made in warm, nondynamic and productive waters reduce the error of the estimation by 20 %. This result should likely serve for future in situ network deployment.
Filippos Tagklis, Takamitsu Ito, and Annalisa Bracco
Biogeosciences, 17, 231–244, https://doi.org/10.5194/bg-17-231-2020, https://doi.org/10.5194/bg-17-231-2020, 2020
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Deoxygenation of the oceans is potentially one of the most severe ecosystem stressors resulting from global warming given the high sensitivity of dissolved oxygen to ocean temperatures. Climate models suggest that despite the thermodynamic tendency of the oceans to lose oxygen, certain regions experience significant changes in the biologically driven O2 consumption, resulting in a resistance against deoxygenation. Overturning circulation changes are responsible for such a behavior.
Mohammad Abdul Halim, Han Y. H. Chen, and Sean C. Thomas
Biogeosciences, 16, 4357–4375, https://doi.org/10.5194/bg-16-4357-2019, https://doi.org/10.5194/bg-16-4357-2019, 2019
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Using field data collected over 4 years across a range of stand ages, we investigated how seasonal surface albedo in boreal forest varies with stand age, stand structure, and composition. Our results indicate that successional change in species composition is a key driver of age–related patterns in albedo, with hardwood species associated with higher albedo. The patterns described have important implications for both climate modeling and
climate–smartboreal forest management.
Paul A. Moore, Maxwell C. Lukenbach, Dan K. Thompson, Nick Kettridge, Gustaf Granath, and James M. Waddington
Biogeosciences, 16, 3491–3506, https://doi.org/10.5194/bg-16-3491-2019, https://doi.org/10.5194/bg-16-3491-2019, 2019
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Using very-high-resolution digital elevation models (DEMs), we assessed the basic structure and microtopographic variability of hummock–hollow plots at boreal and hemi-boreal sites primarily in North America. Using a simple model of peatland biogeochemical function, our results suggest that both surface heating and moss productivity may not be adequately resolved in models which only consider idealized hummock–hollow units.
Renee K. Gruber, Ryan J. Lowe, and James L. Falter
Biogeosciences, 16, 1921–1935, https://doi.org/10.5194/bg-16-1921-2019, https://doi.org/10.5194/bg-16-1921-2019, 2019
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Researchers from the University of Western Australia's Oceans Institute are studying large tides (up to 12 m range) that occur in the Kimberley region of Australia. These tides flush coral reefs with water rich in nutrients, which supports the growth of reef organisms. In this paper, we show how tidal cycles and seasons control nutrient availability on reefs. This study is among the first published accounts of reefs and water quality data in the remote and pristine Kimberley region.
Sergey A. Marakushev and Ol'ga V. Belonogova
Biogeosciences, 16, 1817–1828, https://doi.org/10.5194/bg-16-1817-2019, https://doi.org/10.5194/bg-16-1817-2019, 2019
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Among the existing theories of the autotrophic origin of life, CO2 is usually considered to be the carbon source for nascent autotrophic metabolism. However, ancestral carbon used in metabolism may have been derived from CH4 if the outflow of magma fluid to the surface of the Earth consisted mainly of methane. The hydrothermal system model is considered in the form of a phase diagram, which demonstrates the area of redox and P and T conditions favorable to development of primary methanotroph.
Venugopal Thushara, Puthenveettil Narayana Menon Vinayachandran, Adrian J. Matthews, Benjamin G. M. Webber, and Bastien Y. Queste
Biogeosciences, 16, 1447–1468, https://doi.org/10.5194/bg-16-1447-2019, https://doi.org/10.5194/bg-16-1447-2019, 2019
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Chlorophyll distribution in the ocean remains to be explored in detail, despite its climatic significance. Here, we document the vertical structure of chlorophyll in the Bay of Bengal using observations and a model. The shape of chlorophyll profiles, characterized by prominent deep chlorophyll maxima, varies in dynamically different regions, controlled by the monsoonal forcings. The present study provides new insights into the vertical distribution of chlorophyll, rarely observed by satellites.
Soeren Thomsen, Johannes Karstensen, Rainer Kiko, Gerd Krahmann, Marcus Dengler, and Anja Engel
Biogeosciences, 16, 979–998, https://doi.org/10.5194/bg-16-979-2019, https://doi.org/10.5194/bg-16-979-2019, 2019
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Physical and biogeochemical observations from an autonomous underwater vehicle in combination with ship-based measurements are used to investigate remote and local drivers of the oxygen and nutrient variability off Mauritania. Beside the transport of oxygen and nutrients characteristics from remote areas towards Mauritania also local remineralization of organic material close to the seabed seems to be important for the distribution of oxygen and nutrients.
Cited articles
Ball, J. T., Woodrow, I. E., and Berry, J. A.: A model predicting stomatal conductance and its contribution to the control of photosynthesis under different environmental conditions, in: Progress in photosynthesis research: volume 4 proceedings of the VIIth international congress on photosynthesis providence, Rhode Island, USA, august 10–15, 1986, 221–224, Springer, https://doi.org/10.1007/978-94-017-0519-6_48, 1987. a
Best, M. J., Abramowitz, G., Johnson, H. R., Pitman, A. J., Balsamo, G., Boone, A., Cuntz. M., Decharme, B., Dirmeyer, P. A., Dong, J., Ek, M., Guo, Z., Haverd, V., van den Hurk, B. J. J., Nearing, G. S., Pak, B., Peters-Lidard, C., Santanello JR., J. A., Stevens, L., and Vuichard, N.: The plumbing of land surface models: benchmarking model performance, J. Hydrometeorol., 16, 1425–1442, https://doi.org/10.1175/JHM-D-14-0158.1, 2015. a
Bonan, G. B., Patton, E. G., Finnigan, J. J., Baldocchi, D. D., and Harman, I. N.: Moving beyond the incorrect but useful paradigm: reevaluating big-leaf and multilayer plant canopies to model biosphere-atmosphere fluxes–a review, Agr. Forest Meteorol., 306, 108435, https://doi.org/10.1016/j.agrformet.2021.108435, 2021. a, b
Boone, A. A.: Land surface Interactions with the Atmosphere over the Iberian Semi-arid Environment (LIAISE), Gewex News, HAL Id: hal-02392949, 2019. a
Boone, A., Bellvert, J., Best, M., Brooke, J., Canut-Rocafort, G., Cuxart, J., Hartogensis, O., Le Moigne, P., Miró, J. R., Polcher, J., Price, J., Quintana-Seguí, P., and Wooster, M.: Updates on the international land surface interactions with the atmosphere over the Iberian semi-arid environment (LIAISE) field campaign, Gewex News, HAL Id: hal-03842003, 2021. a, b
Boone, A. A., Bellvert, J., Best, M., Brooke, J., Canut-Rocafort, G., Cuxart, J., Hartogensis, O., Le Moigne, P., Ramon-Miró, J., Polcher, J., Price, J., Quintana-Seguí, P., and Wooster, M.: LIAISE Field Campaign dataset, Aeris Data, https://liaise.aeris-data.fr/products/ (last access: 13 May 2024), 2023. a
Boussetta, S., Balsamo, G., Beljaars, A., Panareda, A.-A., Calvet, J.-C., Jacobs, C., van den Hurk, B., Viterbo, P., Lafont, S., Dutra, E., Jarlan, L., Balzarolo, M., Papale, D., and van der Werf, G.: Natural land carbon dioxide exchanges in the ECMWF integrated forecasting system: Implementation and offline validation, J. Geophys. Res.-Atmos., 118, 5923–5946, 2013. a
Calvet, J.-C., Noilhan, J., Roujean, J.-L., Bessemoulin, P., Cabelguenne, M., Olioso, A., and Wigneron, J.-P.: An interactive vegetation SVAT model tested against data from six contrasting sites, Agr. Forest Meteorol., 92, 73–95, 1998. a
Casso-Torralba, P., Vilà-Guerau de Arellano, J., Bosveld, F., Soler, M. R., Vermeulen, A., Werner, C., and Moors, E.: Diurnal and vertical variability of the sensible heat and carbon dioxide budgets in the atmospheric surface layer, J. Geophys. Res.-Atmos., 113, https://doi.org/10.1029/2007JD009583, 2008. a
Chen, T. H., Henderson-Sellers, A., Milly, P. C. D., Pitman, A. J., Beljaars, A. C. M., Polcher, J., Abramopoulos, F., Boone, A. A., Chang, S., Chen, F., Dai, Y., Desborough, C. E., Dickinson, R. E., Dümenil, L., Ek, M., Garratt, J. R., Gedney, N., Gusev, Y. M., Kim, J., Koster, R., Kowalczyk, E. A., Laval, K., Lean, J., Lettenmaier, D., Liang, X., Mahfouf, J.-F., Mengelkamp, H.-T., Mitchell, K., Nasonova, O. N., Noilhan, J., Robock, A., Rosenzweig, C., Schaake, J., Schlosser, C. A., Schulz, J.-P., Shao, Y., Shmakin, A. B., Verseghy, D. L., Wetzel, P., Wood, E. F., Xue, Y., Yang, Z.-L., and Zeng, Q.: Cabauw experimental results from the project for intercomparison of land-surface parameterization schemes, J. Climate, 10, 1194–1215, 1997. a
Collatz, G. J., Ball, J. T., Grivet, C., and Berry, J. A.: Physiological and environmental regulation of stomatal conductance, photosynthesis and transpiration: a model that includes a laminar boundary layer, Agr. Forest Meteorol., 54, 107–136, 1991. a
Doutriaux-Boucher, M., Webb, M., Gregory, J. M., and Boucher, O.: Carbon dioxide induced stomatal closure increases radiative forcing via a rapid reduction in low cloud, Geophys. Res. Lett., 36, https://doi.org/10.1029/2008GL036273, 2009. a
Echer, F. R. and Rosolem, C. A.: Cotton leaf gas exchange responses to irradiance and leaf aging, Biol. Plantarum, 59, 366–372, 2015. a
Farquhar, G. D., von Caemmerer, S. V., and Berry, J. A.: A biochemical model of photosynthetic CO2 assimilation in leaves of C 3 species, Planta, 149, 78–90, 1980. a
Goudriaan, J., Van Laar, H., Van Keulen, H., and Louwerse, W.: Photosynthesis, CO2 and plant production, Wheat Growth and Modelling, NATO ASI Science, vol 86. Springer, Boston, MA, 107–122, https://doi.org/10.1007/978-1-4899-3665-3_10, 1985. a, b, c, d
Helbig, M., Gerken, T., Beamesderfer, E. R., Baldocchi, D. D., Banerjee, T., Biraud, S. C., Brown, W. O. J., Brunsell, N. A., Burakowski, E. A., Burns, S. P., Butterworth, B. J., Chan, W. S., Davis, K. J., Desai, A. R., Fuentes, J. D., Hollinger, D. Y., Kljun, N., Mauder, M., Novick, K. A., Perkins, J. M., Rahn, D. A., Rey-Sánchez, C., Santanello, J. A., Scott, R. L., Seyednasrollah, B., Stoy, P. C., Sullivan, R. C., Vilà-Guerau de Arellano, J., Wharton, S., Yi, C., and Richardson, A. D.: Integrating continuous atmospheric boundary layer and tower-based flux measurements to advance understanding of land-atmosphere interactions, Agr. Forest Meteorol., 307, 108509, https://doi.org/10.1016/j.agrformet.2021.108509, 2021. a
Henderson-Sellers, A., Pitman, A., Love, P., Irannejad, P., and Chen, T.: The project for intercomparison of land surface parameterization schemes (PILPS): Phases 2 and 3, B. Am. Meteor. Soc., 76, 489–504, 1995. a
Holtslag, A., Svensson, G., Baas, P., Basu, S., Beare, B., Beljaars, A., Bosveld, F., Cuxart, J., Lindvall, J., Steeneveld, G., Tjernström, M., and van de Wiel, B. J. H.: Stable atmospheric boundary layers and diurnal cycles: challenges for weather and climate models, B. Am. Meteor. Soc., 94, 1691–1706, 2013. a
Jacobs, C. M. and de Bruin, H. A.: Predicting regional transpiration at elevated atmospheric CO2: influence of the PBL–vegetation interaction, J. Appl. Meteor. Clim., 36, 1663–1675, 1997. a
Jarvis, P. G. and McNaughton, K.: Stomatal control of transpiration: scaling up from leaf to region, in: Advances in ecological research, 15, 1–49, Elsevier, https://doi.org/10.1016/S0065-2504(08)60119-1, 1986. a, b, c
Kaimal, J. C. and Finnigan, J. J.: Atmospheric boundary layer flows: their structure and measurement, Oxford University Press, https://doi.org/10.1093/oso/9780195062397.001.0001, 1994. a
Kivalov, S. N. and Fitzjarrald, D. R.: Quantifying and modelling the effect of cloud shadows on the surface irradiance at tropical and midlatitude forests, Boundary-Lay. Meteorol., 166, 165–198, 2018. a
Knohl, A. and Baldocchi, D. D.: Effects of diffuse radiation on canopy gas exchange processes in a forest ecosystem, J. Geophys. Res.-Biogeo., 113, https://doi.org/10.1029/2007JG000663, 2008. a
Mangan, M. R., Hartogensis, O., Boone, A., Branch, O., Canut, G., Cuxart, J., de Boer, H. J., Le Page, M., Martínez-Villagrasa, D., Miró, J. R., Price, J., and Vilà-Guerau de Arellano, J.: The surface-boundary layer connection across spatial scales of irrigation-driven thermal heterogeneity: An integrated data and modeling study of the LIAISE field campaign, Agr. Forest Meteorol., 335, 109452, https://doi.org/10.1016/j.agrformet.2023.109452, 2023a. a, b, c, d, e, f, g, h
Mangan, M. R., Hartogensis, O., van Heerwaarden, C., and Vilà-Guerau de Arellano, J.: Evapotranspiration controls across spatial scales of heterogeneity, Q. J. Roy. Meteor. Soc., 149, 2696–2718, 2023b. a
Masson, V., Le Moigne, P., Martin, E., Faroux, S., Alias, A., Alkama, R., Belamari, S., Barbu, A., Boone, A., Bouyssel, F., Brousseau, P., Brun, E., Calvet, J.-C., Carrer, D., Decharme, B., Delire, C., Donier, S., Essaouini, K., Gibelin, A.-L., Giordani, H., Habets, F., Jidane, M., Kerdraon, G., Kourzeneva, E., Lafaysse, M., Lafont, S., Lebeaupin Brossier, C., Lemonsu, A., Mahfouf, J.-F., Marguinaud, P., Mokhtari, M., Morin, S., Pigeon, G., Salgado, R., Seity, Y., Taillefer, F., Tanguy, G., Tulet, P., Vincendon, B., Vionnet, V., and Voldoire, A.: The SURFEXv7.2 land and ocean surface platform for coupled or offline simulation of earth surface variables and fluxes, Geosci. Model Dev., 6, 929–960, https://doi.org/10.5194/gmd-6-929-2013, 2013. a
Mol, W. B., van Stratum, B. J., Knap, W. H., and van Heerwaarden, C. C.: Reconciling observations of solar irradiance variability with cloud size distributions, J. Geophys. Res.-Atmos., 128, e2022JD037894, https://doi.org/10.1029/2022JD037894, 2023. a, b, c
Monin, Andre\ĭ, S. and Obukhov, A. M.: Basic laws of turbulent mixing in the surface layer of the atmosphere, Contrib. Geophys. Inst. Acad. Sci. USSR, 151, e187, 1954. a
Niyogi, D., Chang, H.-I., Saxena, V., Holt, T., Alapaty, K., Booker, F., Chen, F., Davis, K. J., Holben, B., Matsui, T., Meyers, T., Oechel, W. C., Pielke Sr., R. A., Wells, R., Wilson, K., and Xue, Y.: Direct observations of the effects of aerosol loading on net ecosystem CO2 exchanges over different landscapes, Geophys. Res. Lett., 31, https://doi.org/10.1029/2004GL020915, 2004. a, b, c
Noilhan, J. and Planton, S.: A simple parameterization of land surface processes for meteorological models, Mon. Weather Rev., 117, 536–549, 1989. a
Pedruzo-Bagazgoitia, X., Patton, E., Moene, A., Ouwersloot, H., Gerken, T., Machado, L., Martin, S., Sörgel, M., Stoy, P., Yamasoe, M., and Vilà-Guerau de Arellano, J.: Investigating the Diurnal Radiative, Turbulent, and Biophysical Processes in the Amazonian Canopy-Atmosphere Interface by Combining LES Simulations and Observations, J. Adv. Model. Earth Sy., 15, e2022MS003210, https://doi.org/10.1029/2022MS003210, 2023. a
Renner, M., Brenner, C., Mallick, K., Wizemann, H.-D., Conte, L., Trebs, I., Wei, J., Wulfmeyer, V., Schulz, K., and Kleidon, A.: Using phase lags to evaluate model biases in simulating the diurnal cycle of evapotranspiration: a case study in Luxembourg, Hydrol. Earth Syst. Sci., 23, 515–535, https://doi.org/10.5194/hess-23-515-2019, 2019. a
Restrepo-Coupe, N., Levine, N. M., Christoffersen, B. O., Albert, L. P., Wu, J., Costa, M. H., Galbraith, D., Imbuzeiro, H., Martins, G., da Araujo, A. C., Malhi, Y. S., Zeng, X., Moorcroft, P., and Saleska, S. R.: Do dynamic global vegetation models capture the seasonality of carbon fluxes in the Amazon basin? A data-model intercomparison, Glob. Change Biol., 23, 191–208, 2017. a
Séférian, R., Delire, C., Decharme, B., Voldoire, A., Salas y Melia, D., Chevallier, M., Saint-Martin, D., Aumont, O., Calvet, J.-C., Carrer, D., Douville, H., Franchistéguy, L., Joetzjer, E., and Sénési, S.: Development and evaluation of CNRM Earth system model – CNRM-ESM1, Geosci. Model Dev., 9, 1423–1453, https://doi.org/10.5194/gmd-9-1423-2016, 2016. a
Sellers, P., Randall, D., Collatz, G., Berry, J., Field, C., Dazlich, D., Zhang, C., Collelo, G., and Bounoua, L.: A revised land surface parameterization (SiB2) for atmospheric GCMs. Part I: Model formulation, J. Climate, 9, 676–705, 1996. a
Sikma, M., Ouwersloot, H., Pedruzo-Bagazgoitia, X., Van Heerwaarden, C., and de Arellano, J. V.-G.: Interactions between vegetation, atmospheric turbulence and clouds under a wide range of background wind conditions, Agr. Forest Meteorol., 255, 31–43, 2018. a
Stull, R. B.: An introduction to boundary layer meteorology, vol. 13, Springer Science & Business Media, ISBN 978-90-277-2769-5, 1988. a
Tolk, J. A., Evett, S. R., and Howell, T. A.: Advection influences on evapotranspiration of alfalfa in a semiarid climate, Agron. J., 98, 1646–1654, 2006. a
van Diepen, K., Goudriaan, J., Vilà-guerau De Arellano, J., and De Boer, H.: Comparison of C3 Photosynthetic Responses to Light and CO2 Predicted by the Leaf Photosynthesis Models of Farquhar et al.(1980) and Goudriaan et al.(1985), J. Adv. Model. Earth Sy., 14, e2021MS002976, https://doi.org/10.1029/2021MS002976, 2022. a
van Heerwaarden, C. C., Vilà-Guerau de Arellano, J., Moene, A. F., and Holtslag, A. A.: Interactions between dry-air entrainment, surface evaporation and convective boundary-layer development, Quarterly Journal of the Royal Meteorological Society: A journal of the atmospheric sciences, Applied Meteorology and Physical Oceanography, 135, 1277–1291, 2009. a, b, c, d
Vico, G., Manzoni, S., Palmroth, S., and Katul, G.: Effects of stomatal delays on the economics of leaf gas exchange under intermittent light regimes, New Phytol., 192, 640–652, 2011. a
Vilà-Guerau de Arellano, J., Ouwersloot, H. G., Baldocchi, D., and Jacobs, C. M.: Shallow cumulus rooted in photosynthesis, Geophys. Res. Lett., 41, 1796–1802, 2014. a
Vilà-Guerau de Arellano, J., Ney, P., Hartogensis, O., de Boer, H., van Diepen, K., Emin, D., de Groot, G., Klosterhalfen, A., Langensiepen, M., Matveeva, M., Miranda-García, G., Moene, A. F., Rascher, U., Röckmann, T., Adnew, G., Brüggemann, N., Rothfuss, Y., and Graf, A.: CloudRoots: integration of advanced instrumental techniques and process modelling of sub-hourly and sub-kilometre land–atmosphere interactions, Biogeosciences, 17, 4375–4404, https://doi.org/10.5194/bg-17-4375-2020, 2020. a
Vilà-Guerau de Arellano, J., Hartogensis, O., Benedict, I., de Boer, H., Bosman, P. J. M., Botía, S., Cecchini, M. A., Fassen, K. A. P., González-Armas, R., van Diepen, K., Heusinkveld, B. G., Janssens, M., Lobos-Roco, F., Luijkx, I. T., Machado, L. A. T., Mangan, M. R., Moene, A. F., Mol, W. B., van der Molen, M., Moonen, R., Ouwersloot, H. G., Park, S.-W., Pedruzo-Bagazgoitia, X., Röckmann, T., Adnew, G. A., Ronda, R., Sikma, M., Schulte, R., van Stratum, B. J. H., Veerman, M. A., van Zanten, M. C., van Heerwaarden, C. C.: Advancing understanding of land–atmosphere interactions by breaking discipline and scale barriers, Ann. NY Acad. Sci., 2023. a
Short summary
This paper investigates the water and CO2 exchange for an alfalfa field with observations and a model with spatial scales ranging from the stomata to the atmospheric boundary layer. To relate the environmental factors to the leaf gas exchange, we developed three equations that quantify how many of the temporal changes of the leaf gas exchange occur due to changes in the environmental variables. The novelty of the research resides in the capacity to dissect the dynamics of the leaf gas exchange.
This paper investigates the water and CO2 exchange for an alfalfa field with observations and a...
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