Articles | Volume 21, issue 11
https://doi.org/10.5194/bg-21-2909-2024
https://doi.org/10.5194/bg-21-2909-2024
Research article
 | 
14 Jun 2024
Research article |  | 14 Jun 2024

From simple labels to semantic image segmentation: leveraging citizen science plant photographs for tree species mapping in drone imagery

Salim Soltani, Olga Ferlian, Nico Eisenhauer, Hannes Feilhauer, and Teja Kattenborn

Related authors

The ECOSENSE forest: a distributed sensor and data management system for real-time monitoring of ecosystem processes and stresses
Jasmin Tesch, Kathrin Kühnhammer, Delon Wagner, Andreas Christen, Carsten Dormann, Julian Frey, Rüdiger Grote, Teja Kattenborn, Markus Sulzer, Ulrike Wallrabe, Markus Weiler, Christiane Werner, Samaneh Baghbani, Julian Brzozon, Laura Maria Comella, Lea Dedden, Stefanie Dumberger, Yasmina Frey, Matthias Gassilloud, Timo Gerach, Anna Göritz, Simon Haberstroh, Johannes Klüppel, Luis Kremer, Jürgen Kreuzwieser, Hojin Lee, Joachim Maack, Julian Müller, Oswald Prucker, Sanam K. Rajak, Jürgen Rühe, Stefan J. Rupitsch, Helmer Schack-Kirchner, Christian Scharinger, Uttunga Shinde, Till Steinmann, Clara Stock, and Josef Strack
Geosci. Instrum. Method. Data Syst., 15, 253–272, https://doi.org/10.5194/gi-15-253-2026,https://doi.org/10.5194/gi-15-253-2026, 2026
Short summary
Trait-based mapping of functionally diverse tundra types using hyperspectral EnMap data
Antonia Dorea Ludwig, Birgit Heim, and Hannes Feilhauer
EGUsphere, https://doi.org/10.5194/egusphere-2026-5451,https://doi.org/10.5194/egusphere-2026-5451, 2026
This preprint is open for discussion and under review for Biogeosciences (BG).
Short summary
AngleCam V2: Predicting leaf inclination angles across taxa from daytime and nighttime photos
Luis Kremer, Jan Pisek, Ronny Richter, Julian Frey, Daniel Lusk, Christiane Werner, Christian Wirth, and Teja Kattenborn
Biogeosciences, 23, 5607–5624, https://doi.org/10.5194/bg-23-5607-2026,https://doi.org/10.5194/bg-23-5607-2026, 2026
Short summary
Uncertainty Assessment in Deep Learning-based Plant Trait Retrievals from Hyperspectral data
Eya Cherif, Teja Kattenborn, Luke A. Brown, Michael Ewald, Katja Berger, Phuong D. Dao, Tobias B. Hank, Etienne Laliberté, Bing Lu, and Hannes Feilhauer
Biogeosciences, 23, 2235–2259, https://doi.org/10.5194/bg-23-2235-2026,https://doi.org/10.5194/bg-23-2235-2026, 2026
Short summary
Litter vs. Lens: Evaluating LAI from Litter Traps and Hemispherical Photos Across View Zenith Angles and Leaf Fall Phases
Simon Lotz, Teja Kattenborn, Julian Frey, Salim Soltani, Anna Göritz, Tom Jaksztat, and Negin Katal
Biogeosciences, 23, 1949–1963, https://doi.org/10.5194/bg-23-1949-2026,https://doi.org/10.5194/bg-23-1949-2026, 2026
Short summary

Cited articles

Affouard, A., Goëau, H., Bonnet, P., Lombardo, J.-C., and Joly, A.: Pl@ntnet app in the era of deep learning, in: ICLR: International Conference on Learning Representations, April 2017, Toulon, France, ffhal-01629195f, 2017. a, b
Bayraktar, E., Basarkan, M. E., and Celebi, N.: A low-cost UAV framework towards ornamental plant detection and counting in the wild, ISPRS J. Photogramm., 167, 1–11, https://doi.org/10.1016/j.isprsjprs.2020.06.012, 2020. a
Boone, M. E. and Basille, M.: Using iNaturalist to contribute your nature observations to science, EDIS, 2019, 5–5, 2019. a, b, c
Bouguettaya, A., Zarzour, H., Kechida, A., and Taberkit, A. M.: Deep learning techniques to classify agricultural crops through UAV imagery: A review, Neural Comput. Appl., 34, 9511–9536, 2022. a
Braga, G., J. R., Peripato, V., Dalagnol, R., P. Ferreira, M., Tarabalka, Y., OC Aragão, L. E., F. de Campos Velho, H., Shiguemori, E. H., and Wagner, F. H.: Tree crown delineation algorithm based on a convolutional neural network, Remote Sens., 12, 1288, https://doi.org/10.3390/rs12081288, 2020. a
Short summary
In this research, we developed a novel method using citizen science data as alternative training data for computer vision models to map plant species in unoccupied aerial vehicle (UAV) images. We use citizen science plant photographs to train models and apply them to UAV images. We tested our approach on UAV images of a test site with 10 different tree species, yielding accurate results. This research shows the potential of citizen science data to advance our ability to monitor plant species.
Share
Altmetrics
Final-revised paper
Preprint