Articles | Volume 10, issue 2
https://doi.org/10.5194/bg-10-1155-2013
© Author(s) 2013. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-10-1155-2013
© Author(s) 2013. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| Highlight paper
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21 Feb 2013
Research article | Highlight paper |
| 21 Feb 2013
An unknown oxidative metabolism substantially contributes to soil CO2 emissions
INRA, UR 874 UREP, 63100 Clermont-Ferrand, France
present address: Department of Biological Sciences, Macquarie University, NSW 2109, Australia
G. Alvarez
INRA, UR 874 UREP, 63100 Clermont-Ferrand, France
Clermont Université, VetAgro Sup, 63000, Clermont-Ferrand, France
J. Colombet
University of Clermont Ferrand, UMR 6023 LMGE, 63177 Aubière, France
A. Comby
INRA, UR 874 UREP, 63100 Clermont-Ferrand, France
R. Despinasse
INRA, UMR 1095 UBP, 63100 Clermont-Ferrand, France
E. Dubreucq
Montpellier SupAgro, UMR 1208 IATE, 34060 Montpellier, France
M. Joly
INRA, UR 874 UREP, 63100 Clermont-Ferrand, France
A.-C. Lehours
University of Clermont Ferrand, UMR 6023 LMGE, 63177 Aubière, France
V. Perrier
Montpellier SupAgro, UMR 1208 IATE, 34060 Montpellier, France
T. Shahzad
INRA, UR 874 UREP, 63100 Clermont-Ferrand, France
present address: Department of Environmental Sciences, Government College University Faisalabad, 38000-Allama Iqbal Road Faisalabad, Pakistan
S. Fontaine
INRA, UR 874 UREP, 63100 Clermont-Ferrand, France
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Kyle E. Smart, Daniel O. Breecker, Christopher B. Blackwood, and Timothy M. Gallagher
Biogeosciences, 22, 87–101, https://doi.org/10.5194/bg-22-87-2025, https://doi.org/10.5194/bg-22-87-2025, 2025
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When microbes consume carbon within soils, it is important to know how much carbon is respired and lost as carbon dioxide versus how much is used to make new biomass. We used a new approach of monitoring carbon dioxide and oxygen to track the fate of consumed carbon during a series of laboratory experiments where sugar was added to moistened soil. Our approach allowed us to estimate how much sugar was converted to dead microbial biomass, which is more likely to be preserved in soils.
Claudia Guidi, Sia Gosheva-Oney, Markus Didion, Roman Flury, Lorenz Walthert, Stephan Zimmermann, Brian J. Oney, Pascal A. Niklaus, Esther Thürig, Toni Viskari, Jari Liski, and Frank Hagedorn
EGUsphere, https://doi.org/10.5194/egusphere-2024-3788, https://doi.org/10.5194/egusphere-2024-3788, 2024
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Predicting soil organic carbon (SOC) stocks in forests is crucial for assessing C balance, yet drivers of SOC stocks remain uncertain at large scales. Across a broad environmental gradient in Switzerland, we compared measured SOC stocks with those modelled by Yasso20, commonly used for GHG budgets. Our results show that soil mineral properties and climate are main controls of SOC stocks, indicating that better accounting of these processes will advance accuracy of SOC stock predictions.
Jiyin Li, Yeming You, Wen Zhang, Yi Wang, Yuying Liang, Haimei Huang, Hailun Ma, Qinxia He, Angang Ming, and Xueman Huang
EGUsphere, https://doi.org/10.5194/egusphere-2024-3456, https://doi.org/10.5194/egusphere-2024-3456, 2024
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Monoculture of Eucalyptus can lead to soil degradation. In this study, we introduced nitrogen-fixing species in Eucalyptus plantations and investigated the effect of the introduction of nitrogen-fixing species on soil phosphorus transformation by soil microorganisms and their nitrogen-phosphorus cycling functional genes, which may be a promising forest management strategy to improve ecosystem phosphorus benefits.
Katherine E. Grant, Marisa N. Repasch, Kari M. Finstad, Julia D. Kerr, Maxwell Marple, Christopher J. Larson, Taylor A. B. Broek, Jennifer Pett-Ridge, and Karis J. McFarlane
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Soils store organic carbon composed of multiple compounds from plants and microbes for different lengths of time. To understand how soils store these different carbon types, we measure the time each carbon fraction is in a grassland soil profile. Our results show that the length of time each individual soil fraction is in our soil changes. Our approach allows a detailed look at the different components in soils. This study can help improve our understanding of soil dynamics.
Peter Levy, Laura Bentley, Peter Danks, Bridget Emmett, Angus Garbutt, Stephen Heming, Peter Henrys, Aidan Keith, Inma Lebron, Niall McNamara, Richard Pywell, John Redhead, David Robinson, and Alexander Wickenden
Biogeosciences, 21, 4301–4315, https://doi.org/10.5194/bg-21-4301-2024, https://doi.org/10.5194/bg-21-4301-2024, 2024
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We collated a large data set (15 790 soil cores) on soil carbon stock in different land uses. Soil carbon stocks were highest in woodlands and lowest in croplands. The variability in the effects was large. This has important implications for agri-environment schemes seeking to sequester carbon in the soil by altering land use because the effect of a given intervention is very hard to verify.
Marija Stojanova, Pierre Arbelet, François Baudin, Nicolas Bouton, Giovanni Caria, Lorenza Pacini, Nicolas Proix, Edouard Quibel, Achille Thin, and Pierre Barré
Biogeosciences, 21, 4229–4237, https://doi.org/10.5194/bg-21-4229-2024, https://doi.org/10.5194/bg-21-4229-2024, 2024
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Because of its importance for climate regulation and soil health, many studies focus on carbon dynamics in soils. However, quantifying organic and inorganic carbon remains an issue in carbonated soils. In this technical note, we propose a validated correction method to quantify organic and inorganic carbon in soils using Rock-Eval® thermal analysis. With this correction, the Rock-Eval® method has the potential to become the standard method for quantifying carbon in carbonate soils.
Armando Molina, Veerle Vanacker, Oliver Chadwick, Santiago Zhiminaicela, Marife Corre, and Edzo Veldkamp
Biogeosciences, 21, 3075–3091, https://doi.org/10.5194/bg-21-3075-2024, https://doi.org/10.5194/bg-21-3075-2024, 2024
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The tropical Andes contains unique landscapes where forest patches are surrounded by tussock grasses and cushion-forming plants. The aboveground vegetation composition informs us about belowground nutrient availability: patterns in plant-available nutrients resulted from strong biocycling of cations and removal of soil nutrients by plant uptake or leaching. Future changes in vegetation distribution will affect soil water and solute fluxes and the aquatic ecology of Andean rivers and lakes.
Sahiti Bulusu, Cristina Prieto García, Helen E. Dahlke, and Elad Levintal
Biogeosciences, 21, 3007–3013, https://doi.org/10.5194/bg-21-3007-2024, https://doi.org/10.5194/bg-21-3007-2024, 2024
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Do-it-yourself hardware is a new way to improve measurement resolution. We present a low-cost, automated system for field measurements of low nitrate concentrations in soil porewater and open water bodies. All data hardware components cost USD 1100, which is much cheaper than other available commercial solutions. We provide the complete building guide to reduce technical barriers, which we hope will allow easier reproducibility and set up new soil and environmental monitoring applications.
Violeta Mendoza-Martinez, Scott L. Collins, and Jennie R. McLaren
Biogeosciences, 21, 2655–2667, https://doi.org/10.5194/bg-21-2655-2024, https://doi.org/10.5194/bg-21-2655-2024, 2024
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We examine the impacts of multi-decadal nitrogen additions on a dryland ecosystem N budget, including the soil, microbial, and plant N pools. After 26 years, there appears to be little impact on the soil microbial or plant community and only minimal increases in N pools within the soil. While perhaps encouraging from a conservation standpoint, we calculate that greater than 95 % of the nitrogen added to the system is not retained and is instead either lost deeper in the soil or emitted as gas.
Sean Fettrow, Andrew Wozniak, Holly A. Michael, and Angelia L. Seyfferth
Biogeosciences, 21, 2367–2384, https://doi.org/10.5194/bg-21-2367-2024, https://doi.org/10.5194/bg-21-2367-2024, 2024
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Salt marshes play a big role in global carbon (C) storage, and C stock estimates are used to predict future changes. However, spatial and temporal gradients in C burial rates over the landscape exist due to variations in water inundation, dominant plant species and stage of growth, and tidal action. We quantified soil C concentrations in soil cores across time and space beside several porewater biogeochemical variables and discussed the controls on variability in soil C in salt marsh ecosystems.
Andrés Tangarife-Escobar, Georg Guggenberger, Xiaojuan Feng, Guohua Dai, Carolina Urbina-Malo, Mina Azizi-Rad, and Carlos A. Sierra
Biogeosciences, 21, 1277–1299, https://doi.org/10.5194/bg-21-1277-2024, https://doi.org/10.5194/bg-21-1277-2024, 2024
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Soil organic matter stability depends on future temperature and precipitation scenarios. We used radiocarbon (14C) data and model predictions to understand how the transit time of carbon varies under environmental change in grasslands and peatlands. Soil moisture affected the Δ14C of peatlands, while temperature did not have any influence. Our models show the correspondence between Δ14C and transit time and could allow understanding future interactions between terrestrial and atmospheric carbon
Emiko K. Stuart, Laura Castañeda-Gómez, Wolfram Buss, Jeff R. Powell, and Yolima Carrillo
Biogeosciences, 21, 1037–1059, https://doi.org/10.5194/bg-21-1037-2024, https://doi.org/10.5194/bg-21-1037-2024, 2024
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We inoculated wheat plants with various types of fungi whose impacts on soil carbon are poorly understood. After several months of growth, we examined both their impacts on soil carbon and the underlying mechanisms using multiple methods. Overall the fungi benefitted the storage of carbon in soil, mainly by improving the stability of pre-existing carbon, but several pathways were involved. This study demonstrates their importance for soil carbon storage and, therefore, climate change mitigation.
Huimin Sun, Michael W. I. Schmidt, Jintao Li, Jinquan Li, Xiang Liu, Nicholas O. E. Ofiti, Shurong Zhou, and Ming Nie
Biogeosciences, 21, 575–589, https://doi.org/10.5194/bg-21-575-2024, https://doi.org/10.5194/bg-21-575-2024, 2024
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A soil organic carbon (SOC) molecular structure suggested that the easily decomposable and stabilized SOC is similarly affected after 9-year warming and N treatments despite large changes in SOC stocks. Given the long residence time of some SOC, the similar loss of all measurable chemical forms of SOC under global change treatments could have important climate consequences.
Haoli Zhang, Doudou Chang, Zhifeng Zhu, Chunmei Meng, and Kaiyong Wang
Biogeosciences, 21, 1–11, https://doi.org/10.5194/bg-21-1-2024, https://doi.org/10.5194/bg-21-1-2024, 2024
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Soil salinity mediates microorganisms and soil processes like soil organic carbon (SOC) cycling. We observed that negative priming effects at the early stages might be due to the preferential utilization of cottonseed meal. The positive priming that followed decreased with the increase in salinity.
Joséphine Hazera, David Sebag, Isabelle Kowalewski, Eric Verrecchia, Herman Ravelojaona, and Tiphaine Chevallier
Biogeosciences, 20, 5229–5242, https://doi.org/10.5194/bg-20-5229-2023, https://doi.org/10.5194/bg-20-5229-2023, 2023
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This study adapts the Rock-Eval® protocol to quantify soil organic carbon (SOC) and soil inorganic carbon (SIC) on a non-pretreated soil aliquot. The standard protocol properly estimates SOC contents once the TOC parameter is corrected. However, it cannot complete the thermal breakdown of SIC amounts > 4 mg, leading to an underestimation of high SIC contents by the MinC parameter, even after correcting for this. Thus, the final oxidation isotherm is extended to 7 min to quantify any SIC amount.
Bo Zhao, Amin Dou, Zhiwei Zhang, Zhenyu Chen, Wenbo Sun, Yanli Feng, Xiaojuan Wang, and Qiang Wang
Biogeosciences, 20, 4761–4774, https://doi.org/10.5194/bg-20-4761-2023, https://doi.org/10.5194/bg-20-4761-2023, 2023
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This study provided a comprehensive analysis of the spatial variability and determinants of Fe-bound organic carbon (Fe-OC) among terrestrial, wetland, and marine ecosystems and its governing factors globally. We illustrated that reactive Fe was not only an important sequestration mechanism for OC in terrestrial ecosystems but also an effective “rusty sink” of OC preservation in wetland and marine ecosystems, i.e., a key factor for long-term OC storage in global ecosystems.
Han Sun, Tomoyasu Nishizawa, Hiroyuki Ohta, and Kazuhiko Narisawa
Biogeosciences, 20, 4737–4749, https://doi.org/10.5194/bg-20-4737-2023, https://doi.org/10.5194/bg-20-4737-2023, 2023
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In this research, we assessed the diversity and function of the dark septate endophytic (DSE) fungi community associated with Miscanthus condensatus root in volcanic ecosystems. Both metabarcoding and isolation were adopted in this study. We further validated effects on plant growth by inoculation of some core DSE isolates. This study helps improve our understanding of the role of Miscanthus condensatus-associated DSE fungi during the restoration of post-volcanic ecosystems.
Xianjin He, Laurent Augusto, Daniel S. Goll, Bruno Ringeval, Ying-Ping Wang, Julian Helfenstein, Yuanyuan Huang, and Enqing Hou
Biogeosciences, 20, 4147–4163, https://doi.org/10.5194/bg-20-4147-2023, https://doi.org/10.5194/bg-20-4147-2023, 2023
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We identified total soil P concentration as the most important predictor of all soil P pool concentrations, except for primary mineral P concentration, which is primarily controlled by soil pH and only secondarily by total soil P concentration. We predicted soil P pools’ distributions in natural systems, which can inform assessments of the role of natural P availability for ecosystem productivity, climate change mitigation, and the functioning of the Earth system.
Imane Slimani, Xia Zhu-Barker, Patricia Lazicki, and William Horwath
Biogeosciences, 20, 3873–3894, https://doi.org/10.5194/bg-20-3873-2023, https://doi.org/10.5194/bg-20-3873-2023, 2023
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There is a strong link between nitrogen availability and iron minerals in soils. These minerals have multiple outcomes for nitrogen availability depending on soil conditions and properties. For example, iron can limit microbial degradation of nitrogen in aerated soils but has opposing outcomes in non-aerated soils. This paper focuses on the multiple ways iron can affect nitrogen bioavailability in soils.
Shane W. Stoner, Marion Schrumpf, Alison Hoyt, Carlos A. Sierra, Sebastian Doetterl, Valier Galy, and Susan Trumbore
Biogeosciences, 20, 3151–3163, https://doi.org/10.5194/bg-20-3151-2023, https://doi.org/10.5194/bg-20-3151-2023, 2023
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Soils store more carbon (C) than any other terrestrial C reservoir, but the processes that control how much C stays in soil, and for how long, are very complex. Here, we used a recent method that involves heating soil in the lab to measure the range of C ages in soil. We found that most C in soil is decades to centuries old, while some stays for much shorter times (days to months), and some is thousands of years old. Such detail helps us to estimate how soil C may react to changing climate.
Adetunji Alex Adekanmbi, Laurence Dale, Liz Shaw, and Tom Sizmur
Biogeosciences, 20, 2207–2219, https://doi.org/10.5194/bg-20-2207-2023, https://doi.org/10.5194/bg-20-2207-2023, 2023
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The decomposition of soil organic matter and flux of carbon dioxide are expected to increase as temperatures rise. However, soil organic matter decomposition is a two-step process whereby large molecules are first broken down outside microbial cells and then respired within microbial cells. We show here that these two steps are not equally sensitive to increases in soil temperature and that global warming may cause a shift in the rate-limiting step from outside to inside the microbial cell.
Mercedes Román Dobarco, Alexandre M. J-C. Wadoux, Brendan Malone, Budiman Minasny, Alex B. McBratney, and Ross Searle
Biogeosciences, 20, 1559–1586, https://doi.org/10.5194/bg-20-1559-2023, https://doi.org/10.5194/bg-20-1559-2023, 2023
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Soil organic carbon (SOC) is of a heterogeneous nature and varies in chemistry, stabilisation mechanisms, and persistence in soil. In this study we mapped the stocks of SOC fractions with different characteristics and turnover rates (presumably PyOC >= MAOC > POC) across Australia, combining spectroscopy and digital soil mapping. The SOC stocks (0–30 cm) were estimated as 13 Pg MAOC, 2 Pg POC, and 5 Pg PyOC.
Frederick Büks
Biogeosciences, 20, 1529–1535, https://doi.org/10.5194/bg-20-1529-2023, https://doi.org/10.5194/bg-20-1529-2023, 2023
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Ultrasonication with density fractionation of soils is a commonly used method to separate soil organic matter pools, which is, e.g., important to calculate carbon turnover in landscapes. It is shown that the approach that merges soil and dense solution without mixing has a low recovery rate and causes co-extraction of parts of the retained labile pool along with the intermediate pool. An alternative method with high recovery rates and no cross-contamination was recommended.
Tino Peplau, Christopher Poeplau, Edward Gregorich, and Julia Schroeder
Biogeosciences, 20, 1063–1074, https://doi.org/10.5194/bg-20-1063-2023, https://doi.org/10.5194/bg-20-1063-2023, 2023
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We buried tea bags and temperature loggers in a paired-plot design in soils under forest and agricultural land and retrieved them after 2 years to quantify the effect of land-use change on soil temperature and litter decomposition in subarctic agricultural systems. We could show that agricultural soils were on average 2 °C warmer than forests and that litter decomposition was enhanced. The results imply that deforestation amplifies effects of climate change on soil organic matter dynamics.
Joseph Okello, Marijn Bauters, Hans Verbeeck, Samuel Bodé, John Kasenene, Astrid Françoys, Till Engelhardt, Klaus Butterbach-Bahl, Ralf Kiese, and Pascal Boeckx
Biogeosciences, 20, 719–735, https://doi.org/10.5194/bg-20-719-2023, https://doi.org/10.5194/bg-20-719-2023, 2023
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The increase in global and regional temperatures has the potential to drive accelerated soil organic carbon losses in tropical forests. We simulated climate warming by translocating intact soil cores from higher to lower elevations. The results revealed increasing temperature sensitivity and decreasing losses of soil organic carbon with increasing elevation. Our results suggest that climate warming may trigger enhanced losses of soil organic carbon from tropical montane forests.
Johanna Pihlblad, Louise C. Andresen, Catriona A. Macdonald, David S. Ellsworth, and Yolima Carrillo
Biogeosciences, 20, 505–521, https://doi.org/10.5194/bg-20-505-2023, https://doi.org/10.5194/bg-20-505-2023, 2023
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Elevated CO2 in the atmosphere increases forest biomass productivity when growth is not limited by soil nutrients. This study explores how mature trees stimulate soil availability of nitrogen and phosphorus with free-air carbon dioxide enrichment after 5 years of fumigation. We found that both nutrient availability and processes feeding available pools increased in the rhizosphere, and phosphorus increased at depth. This appears to not be by decomposition but by faster recycling of nutrients.
Rodrigo Vargas and Van Huong Le
Biogeosciences, 20, 15–26, https://doi.org/10.5194/bg-20-15-2023, https://doi.org/10.5194/bg-20-15-2023, 2023
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Quantifying the role of soils in nature-based solutions requires accurate estimates of soil greenhouse gas (GHG) fluxes. We suggest that multiple GHG fluxes should not be simultaneously measured at a few fixed time intervals, but an optimized sampling approach can reduce bias and uncertainty. Our results have implications for assessing GHG fluxes from soils and a better understanding of the role of soils in nature-based solutions.
Kristine Karstens, Benjamin Leon Bodirsky, Jan Philipp Dietrich, Marta Dondini, Jens Heinke, Matthias Kuhnert, Christoph Müller, Susanne Rolinski, Pete Smith, Isabelle Weindl, Hermann Lotze-Campen, and Alexander Popp
Biogeosciences, 19, 5125–5149, https://doi.org/10.5194/bg-19-5125-2022, https://doi.org/10.5194/bg-19-5125-2022, 2022
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Soil organic carbon (SOC) has been depleted by anthropogenic land cover change and agricultural management. While SOC models often simulate detailed biochemical processes, the management decisions are still little investigated at the global scale. We estimate that soils have lost around 26 GtC relative to a counterfactual natural state in 1975. Yet, since 1975, SOC has been increasing again by 4 GtC due to a higher productivity, recycling of crop residues and manure, and no-tillage practices.
Petri Kiuru, Marjo Palviainen, Arianna Marchionne, Tiia Grönholm, Maarit Raivonen, Lukas Kohl, and Annamari Laurén
Biogeosciences, 19, 5041–5058, https://doi.org/10.5194/bg-19-5041-2022, https://doi.org/10.5194/bg-19-5041-2022, 2022
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Peatlands are large carbon stocks. Emissions of carbon dioxide and methane from peatlands may increase due to changes in management and climate. We studied the variation in the gas diffusivity of peat with depth using pore network simulations and laboratory experiments. Gas diffusivity was found to be lower in deeper peat with smaller pores and lower pore connectivity. However, gas diffusivity was not extremely low in wet conditions, which may reflect the distinctive structure of peat.
Rachael Akinyede, Martin Taubert, Marion Schrumpf, Susan Trumbore, and Kirsten Küsel
Biogeosciences, 19, 4011–4028, https://doi.org/10.5194/bg-19-4011-2022, https://doi.org/10.5194/bg-19-4011-2022, 2022
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Soils will likely become warmer in the future, and this can increase the release of carbon dioxide (CO2) into the atmosphere. As microbes can take up soil CO2 and prevent further escape into the atmosphere, this study compares the rate of uptake and release of CO2 at two different temperatures. With warming, the rate of CO2 uptake increases less than the rate of release, indicating that the capacity to modulate soil CO2 release into the atmosphere will decrease under future warming.
Giuseppe Cipolla, Salvatore Calabrese, Amilcare Porporato, and Leonardo V. Noto
Biogeosciences, 19, 3877–3896, https://doi.org/10.5194/bg-19-3877-2022, https://doi.org/10.5194/bg-19-3877-2022, 2022
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Enhanced weathering (EW) is a promising strategy for carbon sequestration. Since models may help to characterize field EW, the present work applies a hydro-biogeochemical model to four case studies characterized by different rainfall seasonality, vegetation and soil type. Rainfall seasonality strongly affects EW dynamics, but low carbon sequestration suggests that an in-depth analysis at the global scale is required to see if EW may be effective to mitigate climate change.
Vao Fenotiana Razanamahandry, Marjolein Dewaele, Gerard Govers, Liesa Brosens, Benjamin Campforts, Liesbet Jacobs, Tantely Razafimbelo, Tovonarivo Rafolisy, and Steven Bouillon
Biogeosciences, 19, 3825–3841, https://doi.org/10.5194/bg-19-3825-2022, https://doi.org/10.5194/bg-19-3825-2022, 2022
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In order to shed light on possible past vegetation shifts in the Central Highlands of Madagascar, we measured stable isotope ratios of organic carbon in soil profiles along both forested and grassland hillslope transects in the Lake Alaotra region. Our results show that the landscape of this region was more forested in the past: soils in the C4-dominated grasslands contained a substantial fraction of C3-derived carbon, increasing with depth.
Katherine E. O. Todd-Brown, Rose Z. Abramoff, Jeffrey Beem-Miller, Hava K. Blair, Stevan Earl, Kristen J. Frederick, Daniel R. Fuka, Mario Guevara Santamaria, Jennifer W. Harden, Katherine Heckman, Lillian J. Heran, James R. Holmquist, Alison M. Hoyt, David H. Klinges, David S. LeBauer, Avni Malhotra, Shelby C. McClelland, Lucas E. Nave, Katherine S. Rocci, Sean M. Schaeffer, Shane Stoner, Natasja van Gestel, Sophie F. von Fromm, and Marisa L. Younger
Biogeosciences, 19, 3505–3522, https://doi.org/10.5194/bg-19-3505-2022, https://doi.org/10.5194/bg-19-3505-2022, 2022
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Research data are becoming increasingly available online with tantalizing possibilities for reanalysis. However harmonizing data from different sources remains challenging. Using the soils community as an example, we walked through the various strategies that researchers currently use to integrate datasets for reanalysis. We find that manual data transcription is still extremely common and that there is a critical need for community-supported informatics tools like vocabularies and ontologies.
Cited articles
Allison, S. D., Weintraub, M. N., Gartner, T. B., and Waldrop, M. P.: Evolutionary economic principles as regulators of soil enzyme production and ecosystem function, edited by: Shukla, G. and Varma, A., Soil Enzymology, Springer-Verlag, Berlin, Germany, 229–243, 2011.
Baudoin, E., Benizri, E., and Guckert, A.: Metabolic fingerprint of microbial communities from distinct maize rhizosphere compartments, Eur. J. Soil Biol., 37, 35–93, 2001.
Blagodatskaya, E. V., Blagodatsky, S. A., Anderson, T. H., and Kuzyakov, Y.: Priming effects in Chernozem induced by glucose and N in relation to microbial growth strategies, Appl. Soil Ecol., 37, 95–105, 2007.
Borken, W. and Matzner, E.: Reappraisal of drying and wetting effects on C and N mineralization and fluxes in soils, Glob. Change Biol., 15, 808–824, 2009.
Boze, H., Laborde, C., Chemardin, P., Richard, F., Venturing, C., Combarnous, Y., and Moulin, G.: High-level secretory production of recombinant porcine follicle-stimulating hormone by Pichia pastoris, Process Biochem., 36, 907–913, 2001.
Burns, R. G.: Enzyme-activity in soil – location and a possible role in microbial ecology, Soil Biol. Biochem., 14, 423–427, 1982.
Burns, R. G. and Dick, R. P.: Enzymes in the Environment: Activity, Ecology and Applications, Books in Soils, Plants, and the Environment Series, 86, CRC Press, 2002.
Casida, L. E., Klein, D. A., and Sartoro, T.: Soil dehydrogenase activity, Soil Sci., 98, 371–376, 1964.
Chróst, R. J.: Microbial Enzymes in Aquatic Environments, Brock Springer, Contemporary Bioscience Series, London, 1991.
Clare, J. J., Rayment, F. B., Ballantine, S. P., Sreekrishna, K., and Romanos, M. A.: High-level expression of tetanus toxin fragment c in Pichia pastoris strains containing multiple tandem integrations of the gene, Bio/Tech., 9, 455–460, 1991.
Colombet, J., Sime-Ngando, T., Cauchie, H. M., Fonty, G., Hoffmann, L., and Demeure, G.: Depth-related gradients of viral activity in lake Pavin, Appl. Environ. Microb., 72, 4440–4445, 2006.
Fontaine, S., Mariotti, A., and Abbadie, L.: The priming effect of organic matter: A question of microbial competition?, Soil Biol. Biochem., 35, 837–843, 2003.
Fontaine, S., Barot, S., Barre, P., Bdioui, N., Mary, B., and Rumpel, C.: Stability of organic carbon in deep soil layers controlled by fresh carbon supply, Nature, 450, 277–280, 2007.
Heimann, M. and Reichstein, M.: Terrestrial ecosystem carbon dynamics and climate feedbacks, Nature, 451, 289–292, 2008.
Henry, H. A. L.: Soil freeze-thaw cycle experiments: trends, methodological weakness and suggested improvements, Soil Biol. Biochem., 39, 977–986, 2007.
Kashefi, K. and Lovley, D. R.: Extending the upper temperature limit for Life, Science, 301, p. 934, 2003.
Kemmitt, S. J., Lanyon, C. V., Waite, I. S., Wen, Q., Addiscott, T. M., Bird, N. R. A., O'Donnell, A. G., and Brookes, P. C.: Mineralization of native soil organic matter is not regulated by the size, activity or composition of the soil microbial biomass-a new perspective, Soil Biol. Biochem., 40, 61–73, 2008.
Kim, D.-G., Vargas, R., Bond-Lamberty, B., and Turetsky, M. R.: Effects of soil rewetting and thawing on soil gas fluxes: a review of current literature and suggestions for future research, Biogeosciences, 9, 2459–2483, https://doi.org/10.5194/bg-9-2459-2012, 2012.
Koffler, H., Mallett, G. E., and Adye, J.: Molecular basis of biological stability to high temperatures, P. Natl. Acad. Sci. USA, 43, 464–477, 1957.
Krebs, H.: Introductory remarks, Philos. T. Roy. Soc. B, 293, 3–4, 1981.
Lähdesmäki, P. and Pnspanen, R.: Soil enzymology: Role of protective colloid systems in the preservation of exoenzyme activities in soil, Soil Biol. Biochem., 24, 1173–1177, 1992.
Lensi, R., Lescure, C., Steinberg, C., Savoie, J. M., and Faurie, G.: Dynamics of residual enzyme-activities, denitrification potential, and physicochemical properties in a gamma-sterilised soil, Soil Biol. Biochem., 23, 367–373, 1991.
Lopez-Garcia, P.: Habitability: the point of view of a biologist, in: Lectures in Astrobiology, edited by: Gargaud, M., Martin, H., and Claeys, P., Adv. Astrobio. Biogeo., Springer-Verlag Berlin, Berlin, 2, 221–237, 2007.
Makoi, J. H. R. and Ndakidem, P. A.: Selected soil enzymes: example of their potential roles in the ecosystem, Afr. J. Biotechnol., 7, 181–191, 2008.
McNamara, N. P., Black, H. I. J., Beresford, N. A., and Parekh, N. R.: Effects of acute gamma irradiation on chemical, physical and biological properties of soils, Appl. Soil Ecol., 24, 117–132, 2003.
Nardi, S., Muscolo, A., Vaccaro, S., Baiano, S., Spaccini, R., and Piccolo, A.: Relationship between molecular characteristics of soil humic fractions and glycolytic pathway and krebs cycle in maize seedlings, Soil Biol. Biochem., 39, 3138–3146, 2007.
Okutucu, B., Dincer, A., Habib, O., and Zihnioglu, F.: Comparison of five methods for determination of total plasma protein concentration, J. Biochem. Bioph. Meth., 70, 709–711, 2007.
Pascault, N., Ranjard, L., Kaisermann, A., Bachar, D., Christen, R., Terrat, S., Mathieu, O., Lévêque, J., Mougel, C., Henault, C, Lemanceau, P., Péan, M., Boiry, S., Fontaine, S., and Maron, P.-A.: Stimulation of different functional groups of bacteria by various plant residues as a driver of soil priming effect, Ecosystems, in press, 2013.
Paul, E. A. and Clark, F. E.: Soil Microbiology and Biochemistry. Academic Press Inc., San Diego, CA., USA, 273 pp., 1989.
Peterson, G. H.: Respiration of soil sterilized by ionizing radiations, Soil Sci., 94, 71–74, 1962.
Prescott, L., Harley, J., and Klein, D.: Microbiology, McGraw-Hill Compagnies, New York, 2002.
Quiquampoix, H.: Mechanisms of protein adsorption on surfaces and consequences for extracellular enzyme activity in soil, in: Soil Biochem., edited by: Bollag, J.-M. and Stotzky, G., Marcel Dekker, New York, 10, 171–206, 2000.
Rainey, F. A., Ray, K., Ferreira, M., Gatz, B. Z., Nobre, M. F., Bagaley, D., Rash, B. A., Park, M. J., Earl, A. M., Shank, N. C., Small, A. M., Henk, M. C., Battista, J. R., Kampfer, P., and da Costa, M. S.: Extensive diversity of ionizing-radiation-resistant bacteria recovered from Sonoran Desert soil and description of nine new species of the genus Deinococcus obtained from a single soil sample, Appl. Environ. Microb., 71, 5225–5235, 2005.
Ramsay, A. J. and Bawden, A. D.: Effects of sterilization and storage on respiration, nitrogen status and direct counts of soil bacteria using acridine-orange, Soil Biol. Biochem., 15, 263–268, 1983.
Rich, P. R.: The molecular machinery of Keilin's respiratory chain, Biochem. Soc. T., 31, 1095–1105, 2003.
Sarkar, J. M., Leonowicz, A., and Bollag, J. M.: Immobilization of enzymes on clays and soils, Soil Biol. Biochem., 21, 223–230, 1989.
Sinsabaugh, R. L., Hill, B. H., and Follstad Shah, J. J.: Ecoenzymatic stoichiometry of microbial organic nutrient acquisition in soil and sediment, Nature, 462, 795–798, 2009.
Sinsabaugh, R. L. and Follstad Shah, J. J.: Ecoenzymatic stoichiometry and ecological theory, Annual Review of Ecology, Evolution, and Systematics, Annu. Rev. Ecol., 43, 313–343, 2012.
Trevors, J. T.: Sterilization and inhibition of microbial activity in soil, J. Microbiol. Meth., 26, 53–59, 1996.
Trevors, J. T., Mayfield, C. I., and Inniss, W. E.: Measurement of electron-transport system (Ets) activity in soil, Microb. Ecol., 8, 163–168, 1982.
Vanderheiden, G. J., Fairchild, A. C., and Jago, G. R.: Construction of a laboratory press for use with the French pressure cell, Appl. Microbiol. 19, 875-877, 1970.
Wallenstein, M. D. and Weintraub, M. N.: Emerging tools for measuring and modelling the in situ activity of soil extracellular enzymes, Soil Biol. Biochem., 40, 2098–2106, 2008.
Wallenstein, M. D., Hess, A. M., Lewis, M. R., Steltzer, H., and Ayres, E.: Decomposition of aspen leaf litter results in unique metabolomes when decomposed under different tree species, Soil Biol. Biochem, 42, 484–490, 2010.
Weinbauer, M. G.: Ecology of prokaryotic viruses, FEMS Microbiol. Rev., 28, 127–181, 2004.
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