Articles | Volume 11, issue 4
https://doi.org/10.5194/bg-11-1261-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-11-1261-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
27 Feb 2014
Research article |
| 27 Feb 2014
Technical Note: Approximate Bayesian parameterization of a process-based tropical forest model
F. Hartig
UFZ – Helmholtz Centre for Environmental Research, Department of Ecological Modelling, Permoserstr. 15, 04318 Leipzig, Germany
University of Freiburg, Department of Biometry and Environmental System Analysis, Tennenbacher Str. 4, 79085 Freiburg, Germany
C. Dislich
UFZ – Helmholtz Centre for Environmental Research, Department of Ecological Modelling, Permoserstr. 15, 04318 Leipzig, Germany
University of Göttingen, Department of Ecosystem Modelling, Büsgenweg 4, 37077 Göttingen, Germany
T. Wiegand
UFZ – Helmholtz Centre for Environmental Research, Department of Ecological Modelling, Permoserstr. 15, 04318 Leipzig, Germany
A. Huth
UFZ – Helmholtz Centre for Environmental Research, Department of Ecological Modelling, Permoserstr. 15, 04318 Leipzig, Germany
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Many forest models include detailed mechanisms of forest growth and mortality, but regeneration is often simplified. Testing and improving forest regeneration models is challenging. We address this issue by exploring how forest inventories from unmanaged European forests can be used to improve such models. We find that competition for light among trees is captured by the model, unknown model components can be informed by forest inventory data, and climatic effects are challenging to capture.
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Revised manuscript not accepted
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The year 2022 was unique in that the summer heat wave and drought led to a widespread reduction in vegetation growth at high elevation in the European Alps. This impact was unprecedented in the southwestern, warm, and dry part of the Alps. Over the last 2 decades, water has become a co-dominant control of vegetation activity in areas that were, so far, primarily controlled by temperature, and the growth of mountain grasslands has become increasingly sensitive to moisture availability.
Adriana Simonetti, Raquel Fernandes Araujo, Carlos Henrique Souza Celes, Flávia Ranara da Silva e Silva, Joaquim dos Santos, Niro Higuchi, Susan Trumbore, and Daniel Magnabosco Marra
Biogeosciences, 20, 3651–3666, https://doi.org/10.5194/bg-20-3651-2023, https://doi.org/10.5194/bg-20-3651-2023, 2023
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We combined 2 years of monthly drone-acquired RGB (red–green–blue) imagery with field surveys in a central Amazon forest. Our results indicate that small gaps associated with branch fall were the most frequent. Biomass losses were partially controlled by gap area, with branch fall and snapping contributing the least and greatest relative values, respectively. Our study highlights the potential of drone images for monitoring canopy dynamics in dense tropical forests.
Silvia Caldararu, Victor Rolo, Benjamin D. Stocker, Teresa E. Gimeno, and Richard Nair
Biogeosciences, 20, 3637–3649, https://doi.org/10.5194/bg-20-3637-2023, https://doi.org/10.5194/bg-20-3637-2023, 2023
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Ecosystem manipulative experiments are large experiments in real ecosystems. They include processes such as species interactions and weather that would be omitted in more controlled settings. They offer a high level of realism but are underused in combination with vegetation models used to predict the response of ecosystems to global change. We propose a workflow using models and ecosystem experiments together, taking advantage of the benefits of both tools for Earth system understanding.
Katharina Ramskogler, Bettina Knoflach, Bernhard Elsner, Brigitta Erschbamer, Florian Haas, Tobias Heckmann, Florentin Hofmeister, Livia Piermattei, Camillo Ressl, Svenja Trautmann, Michael H. Wimmer, Clemens Geitner, Johann Stötter, and Erich Tasser
Biogeosciences, 20, 2919–2939, https://doi.org/10.5194/bg-20-2919-2023, https://doi.org/10.5194/bg-20-2919-2023, 2023
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Primary succession in proglacial areas depends on complex driving forces. To concretise the complex effects and interaction processes, 39 known explanatory variables assigned to seven spheres were analysed via principal component analysis and generalised additive models. Key results show that in addition to time- and elevation-dependent factors, also disturbances alter vegetation development. The results are useful for debates on vegetation development in a warming climate.
Zijing Li, Zhiyong Li, Xuze Tong, Lei Dong, Ying Zheng, Jinghui Zhang, Bailing Miao, Lixin Wang, Liqing Zhao, Lu Wen, Guodong Han, Frank Yonghong Li, and Cunzhu Liang
Biogeosciences, 20, 2869–2882, https://doi.org/10.5194/bg-20-2869-2023, https://doi.org/10.5194/bg-20-2869-2023, 2023
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We used random forest models and structural equation models to assess the relative importance of the present climate and paleoclimate as determinants of diversity and aboveground biomass. Results showed that paleoclimate changes and modern climate jointly determined contemporary biodiversity patterns, while community biomass was mainly affected by modern climate. These findings suggest that contemporary biodiversity patterns may be affected by processes at divergent temporal scales.
William Rupert Moore Flynn, Harry Jon Foord Owen, Stuart William David Grieve, and Emily Rebecca Lines
Biogeosciences, 20, 2769–2784, https://doi.org/10.5194/bg-20-2769-2023, https://doi.org/10.5194/bg-20-2769-2023, 2023
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Quantifying vegetation indices is crucial for ecosystem monitoring and modelling. Terrestrial laser scanning (TLS) has potential to accurately measure vegetation indices, but multiple methods exist, with little consensus on best practice. We compare three methods and extract wood-to-plant ratio, a metric used to correct for wood in leaf indices. We show corrective metrics vary with tree structure and variation among methods, highlighting the value of TLS data and importance of rigorous testing.
Haiyang Shi, Geping Luo, Olaf Hellwich, Alishir Kurban, Philippe De Maeyer, and Tim Van de Voorde
Biogeosciences, 20, 2727–2741, https://doi.org/10.5194/bg-20-2727-2023, https://doi.org/10.5194/bg-20-2727-2023, 2023
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In studies on the relationship between ecosystem functions and climate and plant traits, previously used data-driven methods such as multiple regression and random forest may be inadequate for representing causality due to limitations such as covariance between variables. Based on FLUXNET site data, we used a causal graphical model to revisit the control of climate and vegetation traits over ecosystem functions.
Josué Delgado-Balbuena, Henry W. Loescher, Carlos A. Aguirre-Gutiérrez, Teresa Alfaro-Reyna, Luis F. Pineda-Martínez, Rodrigo Vargas, and Tulio Arredondo
Biogeosciences, 20, 2369–2385, https://doi.org/10.5194/bg-20-2369-2023, https://doi.org/10.5194/bg-20-2369-2023, 2023
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In the semiarid grassland, an increase in soil moisture at shallow depths instantly enhances carbon release through respiration. In contrast, deeper soil water controls plant carbon uptake but with a delay of several days. Previous soil conditions, biological activity, and the size and timing of precipitation are factors that determine the amount of carbon released into the atmosphere. Thus, future changes in precipitation patterns could convert ecosystems from carbon sinks to carbon sources.
German Vargas Gutiérrez, Daniel Pérez-Aviles, Nanette Raczka, Damaris Pereira-Arias, Julián Tijerín-Triviño, L. David Pereira-Arias, David Medvigy, Bonnie G. Waring, Ember Morrisey, Edward Brzostek, and Jennifer S. Powers
Biogeosciences, 20, 2143–2160, https://doi.org/10.5194/bg-20-2143-2023, https://doi.org/10.5194/bg-20-2143-2023, 2023
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To study whether nutrient availability controls tropical dry forest responses to reductions in soil moisture, we established the first troughfall exclusion experiment in a tropical dry forest plantation system crossed with a fertilization scheme. We found that the effects of fertilization on net primary productivity are larger than the effects of a ~15 % reduction in soil moisture, although in many cases we observed an interaction between drought and nutrient additions, suggesting colimitation.
Alina Lucia Ludat and Simon Kübler
Biogeosciences, 20, 1991–2012, https://doi.org/10.5194/bg-20-1991-2023, https://doi.org/10.5194/bg-20-1991-2023, 2023
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Satellite-based analysis illustrates the impact of geological processes for the stability of the ecosystem in the Mara River basin (Kenya/Tanzania). Newly detected fault activity influences the course of river networks and modifies erosion–deposition patterns. Tectonic surface features and variations in rock chemistry lead to localized enhancement of clay and soil moisture values and seasonally stabilised vegetation growth patterns in this climatically vulnerable region.
Erica Jaakkola, Antje Gärtner, Anna Maria Jönsson, Karl Ljung, Per-Ola Olsson, and Thomas Holst
Biogeosciences, 20, 803–826, https://doi.org/10.5194/bg-20-803-2023, https://doi.org/10.5194/bg-20-803-2023, 2023
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Increased spruce bark beetle outbreaks were recently seen in Sweden. When Norway spruce trees are attacked, they increase their production of VOCs, attempting to kill the beetles. We provide new insights into how the Norway spruce act when infested and found the emitted volatiles to increase up to 700 times and saw a change in compound blend. We estimate that the 2020 bark beetle outbreak in Sweden could have increased the total monoterpene emissions from the forest by more than 10 %.
Georg Wohlfahrt, Albin Hammerle, Felix M. Spielmann, Florian Kitz, and Chuixiang Yi
Biogeosciences, 20, 589–596, https://doi.org/10.5194/bg-20-589-2023, https://doi.org/10.5194/bg-20-589-2023, 2023
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The trace gas carbonyl sulfide (COS), which is taken up by plant leaves in a process very similar to photosynthesis, is thought to be a promising proxy for the gross uptake of carbon dioxide by plants. Here we propose a new framework for estimating a key metric to that end, the so-called leaf relative uptake rate. The values we deduce by applying principles of plant optimality are considerably lower than published values and may help reduce the uncertainty of the global COS budget.
François Jonard, Andrew F. Feldman, Daniel J. Short Gianotti, and Dara Entekhabi
Biogeosciences, 19, 5575–5590, https://doi.org/10.5194/bg-19-5575-2022, https://doi.org/10.5194/bg-19-5575-2022, 2022
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We investigate the spatial and temporal patterns of light and water limitation in plant function at the ecosystem scale. Using satellite observations, we characterize the nonlinear relationships between sun-induced chlorophyll fluorescence (SIF) and water and light availability. This study highlights that soil moisture limitations on SIF are found primarily in drier environments, while light limitations are found in intermediately wet regions.
Nikolai Knapp, Sabine Attinger, and Andreas Huth
Biogeosciences, 19, 4929–4944, https://doi.org/10.5194/bg-19-4929-2022, https://doi.org/10.5194/bg-19-4929-2022, 2022
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The biomass of forests is determined by forest growth and mortality. These quantities can be estimated with different methods such as inventories, remote sensing and modeling. These methods are usually being applied at different spatial scales. The scales influence the obtained frequency distributions of biomass, growth and mortality. This study suggests how to transfer between scales, when using forest models of different complexity for a tropical forest.
Kai Chen, Kevin S. Burgess, Fangliang He, Xiang-Yun Yang, Lian-Ming Gao, and De-Zhu Li
Biogeosciences, 19, 4801–4810, https://doi.org/10.5194/bg-19-4801-2022, https://doi.org/10.5194/bg-19-4801-2022, 2022
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Why does plants' distributional range size vary enormously? This study provides evidence that seed mass, intraspecific seed mass variation, seed dispersal mode and phylogeny contribute to explaining species distribution variation on a geographic scale. Our study clearly shows the importance of including seed life-history traits in modeling and predicting the impact of climate change on species distribution of seed plants.
Ying Ying Chen, Huan Yang, Gen Sheng Bao, Xiao Pan Pang, and Zheng Gang Guo
Biogeosciences, 19, 4521–4532, https://doi.org/10.5194/bg-19-4521-2022, https://doi.org/10.5194/bg-19-4521-2022, 2022
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Investigating the effect of the presence of plateau pikas on ecosystem services of alpine meadows is helpful to understand the role of the presence of small mammalian herbivores in grasslands. The results of this study showed that the presence of plateau pikas led to higher biodiversity conservation, soil nitrogen and phosphorus maintenance, and carbon sequestration of alpine meadows, whereas it led to lower forage available to livestock and water conservation of alpine meadows.
Clement Jean Frédéric Delcourt and Sander Veraverbeke
Biogeosciences, 19, 4499–4520, https://doi.org/10.5194/bg-19-4499-2022, https://doi.org/10.5194/bg-19-4499-2022, 2022
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This study provides new equations that can be used to estimate aboveground tree biomass in larch-dominated forests of northeast Siberia. Applying these equations to 53 forest stands in the Republic of Sakha (Russia) resulted in significantly larger biomass stocks than when using existing equations. The data presented in this work can help refine biomass estimates in Siberian boreal forests. This is essential to assess changes in boreal vegetation and carbon dynamics.
Iris Johanna Aalto, Eduardo Eiji Maeda, Janne Heiskanen, Eljas Kullervo Aalto, and Petri Kauko Emil Pellikka
Biogeosciences, 19, 4227–4247, https://doi.org/10.5194/bg-19-4227-2022, https://doi.org/10.5194/bg-19-4227-2022, 2022
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Tree canopies are strong moderators of understory climatic conditions. In tropical areas, trees cool down the microclimates. Using remote sensing and field measurements we show how even intermediate canopy cover and agroforestry trees contributed to buffering the hottest temperatures in Kenya. The cooling effect was the greatest during hot days and in lowland areas, where the ambient temperatures were high. Adopting agroforestry practices in the area could assist in mitigating climate change.
Jing Wang and Xuefa Wen
Biogeosciences, 19, 4197–4208, https://doi.org/10.5194/bg-19-4197-2022, https://doi.org/10.5194/bg-19-4197-2022, 2022
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Excess radiation and low temperatures exacerbate drought impacts on canopy conductance (Gs) among transects. The primary determinant of drought stress on Gs was soil moisture on the Loess Plateau (LP) and the Mongolian Plateau (MP), whereas it was the vapor pressure deficit on the Tibetan Plateau (TP). Radiation exhibited a negative effect on Gs via drought stress within transects, while temperature had negative effects on stomatal conductance on the TP but no effect on the LP and MP.
Sylvain Monteux, Janine Mariën, and Eveline J. Krab
Biogeosciences, 19, 4089–4105, https://doi.org/10.5194/bg-19-4089-2022, https://doi.org/10.5194/bg-19-4089-2022, 2022
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Quantifying the feedback from the decomposition of thawing permafrost soils is crucial to establish adequate climate warming mitigation scenarios. Past efforts have focused on abiotic and to some extent microbial drivers of decomposition but not biotic drivers such as soil fauna. We added soil fauna (Collembola Folsomia candida) to permafrost, which introduced bacterial taxa without affecting bacterial communities as a whole but increased CO2 production (+12 %), presumably due to priming.
Mirjam Pfeiffer, Munir P. Hoffmann, Simon Scheiter, William Nelson, Johannes Isselstein, Kingsley Ayisi, Jude J. Odhiambo, and Reimund Rötter
Biogeosciences, 19, 3935–3958, https://doi.org/10.5194/bg-19-3935-2022, https://doi.org/10.5194/bg-19-3935-2022, 2022
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Smallholder farmers face challenges due to poor land management and climate change. We linked the APSIM crop model and the aDGVM2 vegetation model to investigate integrated management options that enhance ecosystem functions and services. Sustainable intensification moderately increased yields. Crop residue grazing reduced feed gaps but not for dry-to-wet season transitions. Measures to improve soil water and nutrient status are recommended. Landscape-level ecosystem management is essential.
Marina Corrêa Scalon, Imma Oliveras Menor, Renata Freitag, Karine S. Peixoto, Sami W. Rifai, Beatriz Schwantes Marimon, Ben Hur Marimon Junior, and Yadvinder Malhi
Biogeosciences, 19, 3649–3661, https://doi.org/10.5194/bg-19-3649-2022, https://doi.org/10.5194/bg-19-3649-2022, 2022
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We investigated dynamic nutrient flow and demand in a typical savanna and a transition forest to understand how similar soils and the same climate dominated by savanna vegetation can also support forest-like formations. Savanna relied on nutrient resorption from wood, and nutrient demand was equally partitioned between leaves, wood and fine roots. Transition forest relied on resorption from the canopy biomass and nutrient demand was predominantly driven by leaves.
Emma Bousquet, Arnaud Mialon, Nemesio Rodriguez-Fernandez, Stéphane Mermoz, and Yann Kerr
Biogeosciences, 19, 3317–3336, https://doi.org/10.5194/bg-19-3317-2022, https://doi.org/10.5194/bg-19-3317-2022, 2022
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Pre- and post-fire values of four climate variables and four vegetation variables were analysed at the global scale, in order to observe (i) the general fire likelihood factors and (ii) the vegetation recovery trends over various biomes. The main result of this study is that L-band vegetation optical depth (L-VOD) is the most impacted vegetation variable and takes the longest to recover over dense forests. L-VOD could then be useful for post-fire vegetation recovery studies.
Chen Yang, Yue Shi, Wenjuan Sun, Jiangling Zhu, Chengjun Ji, Yuhao Feng, Suhui Ma, Zhaodi Guo, and Jingyun Fang
Biogeosciences, 19, 2989–2999, https://doi.org/10.5194/bg-19-2989-2022, https://doi.org/10.5194/bg-19-2989-2022, 2022
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Quantifying China's forest biomass C pool is important in understanding C cycling in forests. However, most of studies on forest biomass C pool were limited to the period of 2004–2008. Here, we used a biomass expansion factor method to estimate C pool from 1977 to 2018. The results suggest that afforestation practices, forest growth, and environmental changes were the main drivers of increased C sink. Thus, this study provided an essential basis for achieving China's C neutrality target.
Anne Schucknecht, Bumsuk Seo, Alexander Krämer, Sarah Asam, Clement Atzberger, and Ralf Kiese
Biogeosciences, 19, 2699–2727, https://doi.org/10.5194/bg-19-2699-2022, https://doi.org/10.5194/bg-19-2699-2022, 2022
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Actual maps of grassland traits could improve local farm management and support environmental assessments. We developed, assessed, and applied models to estimate dry biomass and plant nitrogen (N) concentration in pre-Alpine grasslands with drone-based multispectral data and canopy height information. Our results indicate that machine learning algorithms are able to estimate both parameters but reach a better level of performance for biomass.
Ramona J. Heim, Andrey Yurtaev, Anna Bucharova, Wieland Heim, Valeriya Kutskir, Klaus-Holger Knorr, Christian Lampei, Alexandr Pechkin, Dora Schilling, Farid Sulkarnaev, and Norbert Hölzel
Biogeosciences, 19, 2729–2740, https://doi.org/10.5194/bg-19-2729-2022, https://doi.org/10.5194/bg-19-2729-2022, 2022
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Fires will probably increase in Arctic regions due to climate change. Yet, the long-term effects of tundra fires on carbon (C) and nitrogen (N) stocks and cycling are still unclear. We investigated the long-term fire effects on C and N stocks and cycling in soil and aboveground living biomass.
We found that tundra fires did not affect total C and N stocks because a major part of the stocks was located belowground in soils which were largely unaltered by fire.
Aileen B. Baird, Edward J. Bannister, A. Robert MacKenzie, and Francis D. Pope
Biogeosciences, 19, 2653–2669, https://doi.org/10.5194/bg-19-2653-2022, https://doi.org/10.5194/bg-19-2653-2022, 2022
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Forest environments contain a wide variety of airborne biological particles (bioaerosols) important for plant and animal health and biosphere–atmosphere interactions. Using low-cost sensors and a free-air carbon dioxide enrichment (FACE) experiment, we monitor the impact of enhanced CO2 on airborne particles. No effect of the enhanced CO2 treatment on total particle concentrations was observed, but a potential suppression of high concentration bioaerosol events was detected under enhanced CO2.
Melanie S. Verlinden, Hamada AbdElgawad, Arne Ven, Lore T. Verryckt, Sebastian Wieneke, Ivan A. Janssens, and Sara Vicca
Biogeosciences, 19, 2353–2364, https://doi.org/10.5194/bg-19-2353-2022, https://doi.org/10.5194/bg-19-2353-2022, 2022
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Zea mays grows in mesocosms with different soil nutrition levels. At low phosphorus (P) availability, leaf physiological activity initially decreased strongly. P stress decreased over the season. Arbuscular mycorrhizal fungi (AMF) symbiosis increased over the season. AMF symbiosis is most likely responsible for gradual reduction in P stress.
Guoyu Lan, Bangqian Chen, Chuan Yang, Rui Sun, Zhixiang Wu, and Xicai Zhang
Biogeosciences, 19, 1995–2005, https://doi.org/10.5194/bg-19-1995-2022, https://doi.org/10.5194/bg-19-1995-2022, 2022
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Little is known about the impact of rubber plantations on diversity of the Great Mekong Subregion. In this study, we uncovered latitudinal gradients of plant diversity of rubber plantations. Exotic species with high dominance result in loss of plant diversity of rubber plantations. Not all exotic species would reduce plant diversity of rubber plantations. Much more effort should be made to balance agricultural production with conservation goals in this region.
Ulrike Hiltner, Andreas Huth, and Rico Fischer
Biogeosciences, 19, 1891–1911, https://doi.org/10.5194/bg-19-1891-2022, https://doi.org/10.5194/bg-19-1891-2022, 2022
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Quantifying biomass loss rates due to stem mortality is important for estimating the role of tropical forests in the global carbon cycle. We analyse the consequences of long-term elevated stem mortality for tropical forest dynamics and biomass loss. Based on simulations, we developed a statistical model to estimate biomass loss rates of forests in different successional states from forest attributes. Assuming a doubling of tree mortality, biomass loss increased from 3.2 % yr-1 to 4.5 % yr-1.
Jon Cranko Page, Martin G. De Kauwe, Gab Abramowitz, Jamie Cleverly, Nina Hinko-Najera, Mark J. Hovenden, Yao Liu, Andy J. Pitman, and Kiona Ogle
Biogeosciences, 19, 1913–1932, https://doi.org/10.5194/bg-19-1913-2022, https://doi.org/10.5194/bg-19-1913-2022, 2022
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Although vegetation responds to climate at a wide range of timescales, models of the land carbon sink often ignore responses that do not occur instantly. In this study, we explore the timescales at which Australian ecosystems respond to climate. We identified that carbon and water fluxes can be modelled more accurately if we include environmental drivers from up to a year in the past. The importance of antecedent conditions is related to ecosystem aridity but is also influenced by other factors.
Qing Sun, Valentin H. Klaus, Raphaël Wittwer, Yujie Liu, Marcel G. A. van der Heijden, Anna K. Gilgen, and Nina Buchmann
Biogeosciences, 19, 1853–1869, https://doi.org/10.5194/bg-19-1853-2022, https://doi.org/10.5194/bg-19-1853-2022, 2022
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Drought is one of the biggest challenges for future food production globally. During a simulated drought, pea and barley mainly relied on water from shallow soil depths, independent of different cropping systems.
David Kienle, Anna Walentowitz, Leyla Sungur, Alessandro Chiarucci, Severin D. H. Irl, Anke Jentsch, Ole R. Vetaas, Richard Field, and Carl Beierkuhnlein
Biogeosciences, 19, 1691–1703, https://doi.org/10.5194/bg-19-1691-2022, https://doi.org/10.5194/bg-19-1691-2022, 2022
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Volcanic islands consist mainly of basaltic rocks. Additionally, there are often occurrences of small phonolite rocks differing in color and surface. On La Palma (Canary Islands), phonolites appear to be more suitable for plants than the omnipresent basalts. Therefore, we expected phonolites to be species-rich with larger plant individuals compared to the surrounding basaltic areas. Indeed, as expected, we found more species on phonolites and larger plant individuals in general.
Vera Porwollik, Susanne Rolinski, Jens Heinke, Werner von Bloh, Sibyll Schaphoff, and Christoph Müller
Biogeosciences, 19, 957–977, https://doi.org/10.5194/bg-19-957-2022, https://doi.org/10.5194/bg-19-957-2022, 2022
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The study assesses impacts of grass cover crop cultivation on cropland during main-crop off-season periods applying the global vegetation model LPJmL (V.5.0-tillage-cc). Compared to simulated bare-soil fallowing practices, cover crops led to increased soil carbon content and reduced nitrogen leaching rates on the majority of global cropland. Yield responses of main crops following cover crops vary with location, duration of altered management, crop type, water regime, and tillage practice.
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