Articles | Volume 14, issue 6
https://doi.org/10.5194/bg-14-1445-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-14-1445-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
21 Mar 2017
Research article |
| 21 Mar 2017
Viable cold-tolerant iron-reducing microorganisms in geographically diverse subglacial environments
Sophie L. Nixon
CORRESPONDING AUTHOR
School of Earth and Environmental Sciences, University of Manchester,
Manchester, M13 9PL, UK
Jon P. Telling
Department of Civil Engineering and Geosciences, Newcastle University,
Newcastle, NE1 7RU, UK
Jemma L. Wadham
School of Geographical Sciences, University of Bristol, Bristol, BS8
1SS, UK
Charles S. Cockell
UK Centre for Astrobiology, School of Physics and Astronomy,
University of Edinburgh, Edinburgh, EH9 3FD, UK
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Beatriz Gill-Olivas, Jon Telling, Mark Skidmore, and Martyn Tranter
Biogeosciences, 20, 929–943, https://doi.org/10.5194/bg-20-929-2023, https://doi.org/10.5194/bg-20-929-2023, 2023
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Microbial ecosystems have been found in all subglacial environments sampled to date. Yet, little is known of the sources of energy and nutrients that sustain these microbial populations. This study shows that crushing of sedimentary rocks, which contain organic carbon, carbonate and sulfide minerals, along with previously weathered silicate minerals, produces a range of compounds and nutrients which can be utilised by the diverse suite of microbes that inhabit glacier beds.
William D. Smith, Stuart A. Dunning, Stephen Brough, Neil Ross, and Jon Telling
Earth Surf. Dynam., 8, 1053–1065, https://doi.org/10.5194/esurf-8-1053-2020, https://doi.org/10.5194/esurf-8-1053-2020, 2020
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Glacial landslides are difficult to detect and likely underestimated due to rapid covering or dispersal. Without improved detection rates we cannot constrain their impact on glacial dynamics or their potential climatically driven increases in occurrence. Here we present a new open-access tool (GERALDINE) that helps a user detect 92 % of these events over the past 38 years on a global scale. We demonstrate its ability by identifying two new, large glacial landslides in the Hayes Range, Alaska.
Moya L. Macdonald, Jemma L. Wadham, Dickon Young, Chris R. Lunder, Ove Hermansen, Guillaume Lamarche-Gagnon, and Simon O'Doherty
Atmos. Chem. Phys., 20, 7243–7258, https://doi.org/10.5194/acp-20-7243-2020, https://doi.org/10.5194/acp-20-7243-2020, 2020
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Climate change has caused glaciers in the Arctic to shrink, uncovering new soils. We used field measurements to study the exchange of a group of gases involved in ozone destruction, called halocarbons, between these new soils and the atmosphere. We found that mats of cyanobacteria, early colonisers of soils, are linked to a larger-than-expected exchange of halocarbons with the atmosphere. We also found that gases which are commonly thought to be marine in origin were released from these soils.
Jemma Louise Wadham, Jonathan Hawkings, Jon Telling, Dave Chandler, Jon Alcock, Emily O'Donnell, Preeti Kaur, Elizabeth Bagshaw, Martyn Tranter, Andre Tedstone, and Peter Nienow
Biogeosciences, 13, 6339–6352, https://doi.org/10.5194/bg-13-6339-2016, https://doi.org/10.5194/bg-13-6339-2016, 2016
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Fjord and continental shelf environments in the polar regions are host to some of the planet's most productive ecosystems and support economically important fisheries. A key limiting nutrient for many of these marine phytoplankton is nitrogen. Here we evaluate the potential for a melting Greenland Ice Sheet to supply nitrogen to Arctic coastal ecosystems. We show nitrogen fluxes of a similar order of magnitude to one large Arctic river but yields that are double those typical of Arctic rivers.
James A. Bradley, Sandra Arndt, Marie Šabacká, Liane G. Benning, Gary L. Barker, Joshua J. Blacker, Marian L. Yallop, Katherine E. Wright, Christopher M. Bellas, Jonathan Telling, Martyn Tranter, and Alexandre M. Anesio
Biogeosciences, 13, 5677–5696, https://doi.org/10.5194/bg-13-5677-2016, https://doi.org/10.5194/bg-13-5677-2016, 2016
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Soil development following glacier retreat was characterized using a novel integrated field, laboratory and modelling approach in Svalbard. We found community shifts in bacteria, which were responsible for driving cycles in carbon and nutrients. Allochthonous inputs were also important in sustaining bacterial production. This study shows how an integrated model–data approach can improve understanding and obtain a more holistic picture of soil development in an increasingly ice-free future world.
Emily C. O'Donnell, Jemma L. Wadham, Grzegorz P. Lis, Martyn Tranter, Amy E. Pickard, Marek Stibal, Paul Dewsbury, and Sean Fitzsimons
Biogeosciences, 13, 3833–3846, https://doi.org/10.5194/bg-13-3833-2016, https://doi.org/10.5194/bg-13-3833-2016, 2016
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We use a novel ion chromatographic analysis that provides the first identification and quantification of major low-molecular-weight dissolved organic carbon (LMW-DOC) compounds in basal ice. LMW-DOC concentrations were dependent on the bioavailability of the overridden organic carbon, which in turn was influenced by the type of overridden material. The overridden material may thus act as a direct (abiotic leaching) and indirect (microbial cycling) source of DOC to the subglacial environment.
D. M. Chandler, J. D. Alcock, J. L. Wadham, S. L. Mackie, and J. Telling
The Cryosphere, 9, 487–504, https://doi.org/10.5194/tc-9-487-2015, https://doi.org/10.5194/tc-9-487-2015, 2015
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The Greenland Ice Sheet surface shows a diverse range of characteristics, and hosts active microbial communities in debris-rich ''cryoconite holes'' (CHs). Field and satellite data for a complete melt season revealed significant links between surface albedo, CH coverage and biological activity. This suggests satellites may be able to monitor CH biological processes. Nevertheless, caution is needed when extrapolating point measurements of biological processes to larger space and time scales.
E. C. Lawson, J. L. Wadham, M. Tranter, M. Stibal, G. P. Lis, C. E. H. Butler, J. Laybourn-Parry, P. Nienow, D. Chandler, and P. Dewsbury
Biogeosciences, 11, 4015–4028, https://doi.org/10.5194/bg-11-4015-2014, https://doi.org/10.5194/bg-11-4015-2014, 2014
R. Death, J. L. Wadham, F. Monteiro, A. M. Le Brocq, M. Tranter, A. Ridgwell, S. Dutkiewicz, and R. Raiswell
Biogeosciences, 11, 2635–2643, https://doi.org/10.5194/bg-11-2635-2014, https://doi.org/10.5194/bg-11-2635-2014, 2014
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Alexander Savvichev, Igor Rusanov, Yury Dvornikov, Vitaly Kadnikov, Anna Kallistova, Elena Veslopolova, Antonina Chetverova, Marina Leibman, Pavel A. Sigalevich, Nikolay Pimenov, Nikolai Ravin, and Artem Khomutov
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Martin Vohník
Biogeosciences, 18, 2777–2790, https://doi.org/10.5194/bg-18-2777-2021, https://doi.org/10.5194/bg-18-2777-2021, 2021
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Amphistegina lobifera (Foraminifera) has colonized the Mediterranean through the Suez Canal, often forming thick sediments altering the invaded environments. Little is known about postmortem fate of its shells, so I investigated their turnover in the rhizosphere of the dominant Mediterranean seagrass. Most were bioeroded, likely by cyanobacteria and algae but not fungi occurring in the seagrass roots. Bioerosion may counterbalance accumulation of A. lobifera shells in the seabed substrate.
Carolina Oliveira de Santana, Pieter Spealman, Vânia Maria Maciel Melo, David Gresham, Taíse Bomfim de Jesus, and Fabio Alexandre Chinalia
Biogeosciences, 18, 2259–2273, https://doi.org/10.5194/bg-18-2259-2021, https://doi.org/10.5194/bg-18-2259-2021, 2021
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This study highlights the influence of
tidal zonationon the prokaryotic sediment communities of a pristine mangrove forest. We observed that the variability in environmental factors between tidal zones results in differences in structure, diversity, and the potential function of prokaryotic populations. This suggests that further work is needed in determining the role tidal microhabitat biodiversity has in mangroves.
Emilio Marañón, France Van Wambeke, Julia Uitz, Emmanuel S. Boss, Céline Dimier, Julie Dinasquet, Anja Engel, Nils Haëntjens, María Pérez-Lorenzo, Vincent Taillandier, and Birthe Zäncker
Biogeosciences, 18, 1749–1767, https://doi.org/10.5194/bg-18-1749-2021, https://doi.org/10.5194/bg-18-1749-2021, 2021
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The concentration of chlorophyll is commonly used as an indicator of the abundance of photosynthetic plankton (phytoplankton) in lakes and oceans. Our study investigates why a deep chlorophyll maximum, located near the bottom of the upper, illuminated layer develops in the Mediterranean Sea. We find that the acclimation of cells to low light is the main mechanism involved and that this deep maximum represents also a maximum in the biomass and carbon fixation activity of phytoplankton.
Joost de Vries, Fanny Monteiro, Glen Wheeler, Alex Poulton, Jelena Godrijan, Federica Cerino, Elisa Malinverno, Gerald Langer, and Colin Brownlee
Biogeosciences, 18, 1161–1184, https://doi.org/10.5194/bg-18-1161-2021, https://doi.org/10.5194/bg-18-1161-2021, 2021
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Coccolithophores are important calcifying phytoplankton with an overlooked life cycle. We compile a global dataset of marine coccolithophore abundance to investigate the environmental characteristics of each life cycle phase. We find that both phases contribute to coccolithophore abundance and that their different environmental preference increases coccolithophore habitat. Accounting for the life cycle of coccolithophores is thus crucial for understanding their ecology and biogeochemical impact.
María Cristina Casero, Victoria Meslier, Jocelyne DiRuggiero, Antonio Quesada, Carmen Ascaso, Octavio Artieda, Tomasz Kowaluk, and Jacek Wierzchos
Biogeosciences, 18, 993–1007, https://doi.org/10.5194/bg-18-993-2021, https://doi.org/10.5194/bg-18-993-2021, 2021
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Endolithic microhabitats have been described as the last refuge for life in arid and hyper-arid deserts where life has to deal with harsh environmental conditions, such as those in the Atacama Desert. In this work, three different endolithic microhabitats occurring in gypcrete rocks of the Atacama Desert are characterized, using both microscopy and molecular techniques, to show if the architecture of each microhabitat has an influence on the microbial communities inhabiting each of them.
Jeffrey M. Dick, Miao Yu, and Jingqiang Tan
Biogeosciences, 17, 6145–6162, https://doi.org/10.5194/bg-17-6145-2020, https://doi.org/10.5194/bg-17-6145-2020, 2020
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Many natural environments differ in their range of salt concentration (salinity). We developed a metric for the number of water molecules in formation reactions of different proteins and found that it decreases between freshwater and marine systems and also in laboratory experiments with increasing salinity. These results demonstrate a new type of link between geochemical conditions and the chemical composition of microbial communities that can be useful for models of microbial adaptation.
Subhrangshu Mandal, Sabyasachi Bhattacharya, Chayan Roy, Moidu Jameela Rameez, Jagannath Sarkar, Tarunendu Mapder, Svetlana Fernandes, Aditya Peketi, Aninda Mazumdar, and Wriddhiman Ghosh
Biogeosciences, 17, 4611–4631, https://doi.org/10.5194/bg-17-4611-2020, https://doi.org/10.5194/bg-17-4611-2020, 2020
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Potential roles of polythionates as key sulfur cycle intermediates are less appreciated, apparently because, in most of the natural environments, they do not accumulate to easily detectable levels. Our exploration of the eastern Arabian Sea sediment horizons revealed microbe-mediated production and redox transformations of tetrathionate to be important modules of the in situ sulfur cycle, even as high biotic and abiotic reactivity of this polythionate keeps it hidden from geochemical detection.
Magdalena J. Mayr, Matthias Zimmermann, Jason Dey, Bernhard Wehrli, and Helmut Bürgmann
Biogeosciences, 17, 4247–4259, https://doi.org/10.5194/bg-17-4247-2020, https://doi.org/10.5194/bg-17-4247-2020, 2020
Massimiliano Molari, Felix Janssen, Tobias R. Vonnahme, Frank Wenzhöfer, and Antje Boetius
Biogeosciences, 17, 3203–3222, https://doi.org/10.5194/bg-17-3203-2020, https://doi.org/10.5194/bg-17-3203-2020, 2020
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Industrial-scale mining of deep-sea polymetallic nodules will remove nodules in large areas of the sea floor. We describe community composition of microbes associated with nodules of the Peru Basin. Our results show that nodules provide a unique ecological niche, playing an important role in shaping the diversity of the benthic deep-sea microbiome and potentially in element fluxes. We believe that our findings are highly relevant to expanding our knowledge of the impact associated with mining.
Jun Zhao, Yuanfeng Cai, and Zhongjun Jia
Biogeosciences, 17, 1451–1462, https://doi.org/10.5194/bg-17-1451-2020, https://doi.org/10.5194/bg-17-1451-2020, 2020
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We show that soil pH is a key factor in selecting distinct phylotypes of methanotrophs in paddy soils. Type II methanotrophs dominated the methane oxidation in low-pH soils, while type I methanotrophs were more active in high-pH soils. This pH-based niche differentiation of active methanotrophs appeared to be independent of nitrogen fertilization, but the inhibition of type II methanotrophic rate in low-pH soils by the fertilization might aggravate the emission of methane from paddy soils.
Edwin Sien Aun Sia, Zhuoyi Zhu, Jing Zhang, Wee Cheah, Shan Jiang, Faddrine Holt Jang, Aazani Mujahid, Fuh-Kwo Shiah, and Moritz Müller
Biogeosciences, 16, 4243–4260, https://doi.org/10.5194/bg-16-4243-2019, https://doi.org/10.5194/bg-16-4243-2019, 2019
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Microbial community composition and diversity in freshwater habitats are much less studied compared to marine and soil communities. This study presents the first assessment of microbial communities of the Rajang River, the longest river in Malaysia, expanding our knowledge of microbial ecology in tropical regions. Areas surrounded by oil palm plantations showed the lowest diversity and other signs of anthropogenic impacts included the presence of CFB groups as well as probable algal blooms.
Julia Mitzscherling, Fabian Horn, Maria Winterfeld, Linda Mahler, Jens Kallmeyer, Pier P. Overduin, Lutz Schirrmeister, Matthias Winkel, Mikhail N. Grigoriev, Dirk Wagner, and Susanne Liebner
Biogeosciences, 16, 3941–3958, https://doi.org/10.5194/bg-16-3941-2019, https://doi.org/10.5194/bg-16-3941-2019, 2019
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Permafrost temperatures increased substantially at a global scale, potentially altering microbial assemblages involved in carbon mobilization before permafrost thaws. We used Arctic Shelf submarine permafrost as a natural laboratory to investigate the microbial response to long-term permafrost warming. Our work shows that millennia after permafrost warming by > 10 °C, microbial community composition and population size reflect the paleoenvironment rather than a direct effect through warming.
Blanca Rincón-Tomás, Jan-Peter Duda, Luis Somoza, Francisco Javier González, Dominik Schneider, Teresa Medialdea, Esther Santofimia, Enrique López-Pamo, Pedro Madureira, Michael Hoppert, and Joachim Reitner
Biogeosciences, 16, 1607–1627, https://doi.org/10.5194/bg-16-1607-2019, https://doi.org/10.5194/bg-16-1607-2019, 2019
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Cold-water corals were found at active sites in Pompeia Province (Gulf of Cádiz). Since seeped fluids are harmful for the corals, we approached the environmental conditions that allow corals to colonize carbonates while seepage occurs. As a result, we propose that chemosynthetic microorganisms (i.e. sulfide-oxidizing bacteria and AOM-related microorganisms) play an important role in the colonization of the corals at these sites by feeding on the seeped fluids and avoiding coral damage.
Sylwia Śliwińska-Wilczewska, Agata Cieszyńska, Jakub Maculewicz, and Adam Latała
Biogeosciences, 15, 6257–6276, https://doi.org/10.5194/bg-15-6257-2018, https://doi.org/10.5194/bg-15-6257-2018, 2018
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The present study describes responses of picocyanobacteria (PCY) physiology to different environmental conditions. The cultures were grown under 64 combinations of temperature, irradiance in a photosynthetically active spectrum (PAR), and salinity. The results show that each strain of Baltic Synechococcus sp. behaves differently in respective environmental scenarios. The study develops the knowledge on bloom-forming PCY and reasons further research on the smallest size fraction of phytoplankton.
Jose Luis Otero-Ferrer, Pedro Cermeño, Antonio Bode, Bieito Fernández-Castro, Josep M. Gasol, Xosé Anxelu G. Morán, Emilio Marañon, Victor Moreira-Coello, Marta M. Varela, Marina Villamaña, and Beatriz Mouriño-Carballido
Biogeosciences, 15, 6199–6220, https://doi.org/10.5194/bg-15-6199-2018, https://doi.org/10.5194/bg-15-6199-2018, 2018
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The effect of inorganic nutrients on planktonic assemblages has been traditionally assessed by looking at concentrations rather than fluxes of nutrient supply. However, in near-steady-state systems such as subtropical gyres, nitrate concentrations are kept close to the detection limit due to phytoplankton uptake. Our results, based on direct measurements of nitrate diffusive fluxes, support the key role of nitrate supply in controlling the structure of marine picoplankton communities.
Jörn Wehking, Daniel A. Pickersgill, Robert M. Bowers, David Teschner, Ulrich Pöschl, Janine Fröhlich-Nowoisky, and Viviane R. Després
Biogeosciences, 15, 4205–4214, https://doi.org/10.5194/bg-15-4205-2018, https://doi.org/10.5194/bg-15-4205-2018, 2018
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Archaea as a third domain of life play an important role in soils and marine environments. Although archaea have been found in air as a part of the atmospheric bioaerosol, little is known about their atmospheric dynamics due to their low number and challenging analysis.
Here we present a DNA-based study of airborne archaea, show seasonal dynamics, and discuss anthropogenic influences on the diversity, composition, and abundances of airborne archaea.
Nicholas Bock, France Van Wambeke, Moïra Dion, and Solange Duhamel
Biogeosciences, 15, 3909–3925, https://doi.org/10.5194/bg-15-3909-2018, https://doi.org/10.5194/bg-15-3909-2018, 2018
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We report the distribution of major nano- and pico-plankton groups in the western tropical South Pacific. We found microbial community structure to be typical of highly stratified regions of the open ocean, with significant contributions to total biomass by picophytoeukaryotes, and N2 fixation playing a central role in regulating ecosystem processes. Our results also suggest a reduction in the importance of predation in regulating bacteria populations under nutrient-limited conditions.
Michelle Szyja, Burkhard Büdel, and Claudia Colesie
Biogeosciences, 15, 1919–1931, https://doi.org/10.5194/bg-15-1919-2018, https://doi.org/10.5194/bg-15-1919-2018, 2018
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Ongoing human impact transforms habitats into surfaces lacking higher vegetation. Here, biological soil crusts (BSCs) provide ecosystem services like soil creation and carbon uptake. To understand the functioning of these areas, we examined the physiological capability of early successional BSCs. We found features enabling BSCs to cope with varying climatic stresses. BSCs are important carbon fixers independent of the dominating organism. We provide baseline data for modeling carbon fluxes.
Petr Kotas, Hana Šantrůčková, Josef Elster, and Eva Kaštovská
Biogeosciences, 15, 1879–1894, https://doi.org/10.5194/bg-15-1879-2018, https://doi.org/10.5194/bg-15-1879-2018, 2018
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The soil microbial properties were investigated along altitudinal gradients in the Arctic. Systematic altitudinal shift in MCS resulting in high F / B ratios at the most elevated sites was observed. The changes in composition, size and activity of microbial communities were mainly controlled through the effect of vegetation on edaphic properties and by bedrock chemistry. The upward migration of vegetation due to global warming will likely diminish the spatial variability in microbial properties.
Tung-Yi Huang, Bing-Mu Hsu, Wei-Chun Chao, and Cheng-Wei Fan
Biogeosciences, 15, 1815–1826, https://doi.org/10.5194/bg-15-1815-2018, https://doi.org/10.5194/bg-15-1815-2018, 2018
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The n-alkane in litterfall and the microbial community in litter layer in different habitats of lowland subtropical rainforest were studied. We revealed that the plant vegetation of forest not only dominated the n-alkane input of habitats but also governed the diversity of microbial community of litter layer. In this study, we found that the habitat which had high n-alkane input induced a shift of relative abundance toward phylum of Actinobacteria and the growth of alkB gene contained bacteria.
Jennifer Caesar, Alexandra Tamm, Nina Ruckteschler, Anna Lena Leifke, and Bettina Weber
Biogeosciences, 15, 1415–1424, https://doi.org/10.5194/bg-15-1415-2018, https://doi.org/10.5194/bg-15-1415-2018, 2018
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In our study we analyzed the efficiency of different chlorophyll extraction solvents and investigated the effect of different preparatory steps to determine the optimal extraction method for biological soil crusts. Based on our results we confirm a DMSO-based chlorophyll extraction method without grinding pretreatment and suggest to insert an intermediate shaking step for complete chlorophyll extraction.
Zhiwei Xu, Guirui Yu, Xinyu Zhang, Nianpeng He, Qiufeng Wang, Shengzhong Wang, Xiaofeng Xu, Ruili Wang, and Ning Zhao
Biogeosciences, 15, 1217–1228, https://doi.org/10.5194/bg-15-1217-2018, https://doi.org/10.5194/bg-15-1217-2018, 2018
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Forest types with specific soil conditions supported the development of distinct soil microbial communities with variable functions. Our results indicate that the main controls on soil microbes and functions vary across forest ecosystems in different climatic zones. This information will add value to the modeling of microbial processes and will contribute to carbon cycling on a large scale.
Patrick Jung, Laura Briegel-Williams, Anika Simon, Anne Thyssen, and Burkhard Büdel
Biogeosciences, 15, 1149–1160, https://doi.org/10.5194/bg-15-1149-2018, https://doi.org/10.5194/bg-15-1149-2018, 2018
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Arctic, Antarctic and alpine biological soil crusts (BSCs) are formed by adhesion of soil particles to cyanobacteria. BSCs influence ecosystems services like soil erodibility and chemical cycles. In cold environments degradation rates are low and BSCs increase soil organic carbon through photosynthesis, whereby these soils are considered as CO2 sinks. This work provides a novel method to visualize BSCs with a focus on cyanobacteria and their contribution to soil organic carbon.
Rongliang Jia, Yun Zhao, Yanhong Gao, Rong Hui, Haotian Yang, Zenru Wang, and Yixuan Li
Biogeosciences, 15, 1161–1172, https://doi.org/10.5194/bg-15-1161-2018, https://doi.org/10.5194/bg-15-1161-2018, 2018
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Why can biocrust moss survive and flourish in these habitats when stressed simultaneously by drought and sand burial? A field experiment was conducted to assess the combined effects of the two stressors on Bryum argenteum within biocrust. The two stressors did not exacerbate the single negative effects; their mutually antagonistic effect on the physiological vigor of B. argenteum was found, and it provided an opportunity for it to overcome the two co-occurring stressors in arid sandy ecosystems.
Johanna Maltby, Lea Steinle, Carolin R. Löscher, Hermann W. Bange, Martin A. Fischer, Mark Schmidt, and Tina Treude
Biogeosciences, 15, 137–157, https://doi.org/10.5194/bg-15-137-2018, https://doi.org/10.5194/bg-15-137-2018, 2018
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The activity and environmental controls of methanogenesis (MG) within the sulfate-reducing zone (0–30 cm below the seafloor) were investigated in organic-rich sediments of the seasonally hypoxic Eckernförde Bay, SW Baltic Sea. MG activity was mostly linked to non-competitive substrates. The major controls identified were organic matter availability, C / N, temperature, and O2 in the water column, revealing higher rates in warm, stratified, hypoxic seasons compared to colder, oxygenated seasons.
Rebecca Elizabeth Cooper, Karin Eusterhues, Carl-Eric Wegner, Kai Uwe Totsche, and Kirsten Küsel
Biogeosciences, 14, 5171–5188, https://doi.org/10.5194/bg-14-5171-2017, https://doi.org/10.5194/bg-14-5171-2017, 2017
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In this study we show increasing organic matter (OM) content on ferrihydrite surfaces enhances Fe reduction by the model Fe reducer S. oneidensis and a microbial consortia extracted from peat. Similarities in reduction rates between S. oneidensis and the consortia suggest electron shuttling dominates in OM-rich soils. Community profile analyses showed enrichment of fermenters with pure ferrihydrite, whereas OM–mineral complexes favored enrichment of Fe-reducing Desulfobacteria and Pelosinus sp.
Yu-Te Lin, Zhongjun Jia, Dongmei Wang, and Chih-Yu Chiu
Biogeosciences, 14, 4879–4889, https://doi.org/10.5194/bg-14-4879-2017, https://doi.org/10.5194/bg-14-4879-2017, 2017
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We evaluated the bacterial composition and diversity of bamboo soils sampled at different elevations and incubated at different temperatures. Soil respiration was greater at higher elevation and temperature. Soil bacterial structure and diversity showed variable under different incubation times and temperatures. Increases in temperature increased soil respiration and consumption of soil soluble carbon and nitrogen, thus influencing the bacterial diversity and structure at different elevations.
Lichao Liu, Yubing Liu, Peng Zhang, Guang Song, Rong Hui, Zengru Wang, and Jin Wang
Biogeosciences, 14, 3801–3814, https://doi.org/10.5194/bg-14-3801-2017, https://doi.org/10.5194/bg-14-3801-2017, 2017
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We studied the development process of bacterial community structure of biological soil crusts (BSCs) along a revegetation chronosequence by Illumina MiSeq sequencing in the Tengger Desert. Our results indicated (1) a shift of bacterial composition related to their function in the crust development process; (2) bacterial diversity and richness consistent with the recovery phase of soil properties; and (3) bacteria as key contributors to the BSC succession process.
Estelle Couradeau, Daniel Roush, Brandon Scott Guida, and Ferran Garcia-Pichel
Biogeosciences, 14, 311–324, https://doi.org/10.5194/bg-14-311-2017, https://doi.org/10.5194/bg-14-311-2017, 2017
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Endoliths are a prominent bioerosive component of intertidal marine habitats, traditionally thought to be formed by a few cyanobacteria, algae and fungi. Using molecular techniques, however, we found that endoliths from Mona Island, Puerto Rico, were of high diversity, well beyond that reported in traditional studies. We also found evidence for substrate specialization, in that closely related cyanobacteria seem to have diversified to specialize recurrently to excavate various mineral substrates
Yong Wang, Tie Gang Li, Meng Ying Wang, Qi Liang Lai, Jiang Tao Li, Zhao Ming Gao, Zong Ze Shao, and Pei-Yuan Qian
Biogeosciences, 13, 6405–6417, https://doi.org/10.5194/bg-13-6405-2016, https://doi.org/10.5194/bg-13-6405-2016, 2016
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Mild eruption of hydrothermal solutions on deep-sea benthic floor can produce anhydrite crystal layers, where microbes are trapped and preserved for a long period of time. These embedded original inhabitants will be biomarkers for the environment when the hydrothermal eruption occurred. This study discovered a thick anhydrite layer in a deep-sea brine pool in the Red Sea. Oil-degrading bacteria were revealed in the crystals with genomic and microscopic evidence.
Dina Spungin, Ulrike Pfreundt, Hugo Berthelot, Sophie Bonnet, Dina AlRoumi, Frank Natale, Wolfgang R. Hess, Kay D. Bidle, and Ilana Berman-Frank
Biogeosciences, 13, 4187–4203, https://doi.org/10.5194/bg-13-4187-2016, https://doi.org/10.5194/bg-13-4187-2016, 2016
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The marine cyanobacterium Trichodesmium spp. forms massive blooms important to carbon and nitrogen cycling in the oceans that often collapse abruptly. We investigated a Trichodesmium bloom in the lagoon waters of New Caledonia to specifically elucidate the cellular processes mediating the bloom decline. We demonstrate physiological, biochemical, and genetic evidence for nutrient and oxidative stress that induced a genetically controlled programmed cell death (PCD) pathway leading to bloom demise.
Lotta Purkamo, Malin Bomberg, Riikka Kietäväinen, Heikki Salavirta, Mari Nyyssönen, Maija Nuppunen-Puputti, Lasse Ahonen, Ilmo Kukkonen, and Merja Itävaara
Biogeosciences, 13, 3091–3108, https://doi.org/10.5194/bg-13-3091-2016, https://doi.org/10.5194/bg-13-3091-2016, 2016
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The microbial communities of up to 2.3 km depth of Precambrian crystalline bedrock fractures share features with serpenization-driven microbial communities in alkaline springs and subsurface aquifers. This study suggests that phylotypes belonging to Burkholderiales and Clostridia are possible "keystone microbial species" in Outokumpu deep biosphere. Many of the keystone species belong to the rare biosphere with low abundance but a wide range of carbon substrates and a capacity for H2 oxidation.
Thierry Jauffrais, Bruno Jesus, Edouard Metzger, Jean-Luc Mouget, Frans Jorissen, and Emmanuelle Geslin
Biogeosciences, 13, 2715–2726, https://doi.org/10.5194/bg-13-2715-2016, https://doi.org/10.5194/bg-13-2715-2016, 2016
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Some benthic foraminifera can incorporate chloroplasts from microalgae. We investigated chloroplast functionality of two benthic foraminifera (Haynesina germanica & Ammonia tepida) exposed to different light levels. Only H. germanica was capable of using the kleptoplasts, showing net oxygen production. Chloroplast functionality time was longer in darkness (2 weeks) than at high light (1 week). Kleptoplasts are unlikely to be completely functional, thus requiring continuous chloroplast resupply.
L. Zhou, Y. Tan, L. Huang, Z. Hu, and Z. Ke
Biogeosciences, 12, 6809–6822, https://doi.org/10.5194/bg-12-6809-2015, https://doi.org/10.5194/bg-12-6809-2015, 2015
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We observed that phytoplankton biomass and growth rate (μ), microzooplankton grazing rate (m), and coupling (correlation) between the μ and m significantly varied between the summer and winter, and microzooplankton selectively grazed more on the larger-sized phytoplankton, and a low grazing impact on phytoplankton (m/μ < 50%) in the SSCS. The salient seasonal variations in μ and m, and their coupling were closely related to environmental variables under the influence of the East Asian monsoon.
A. M. Womack, P. E. Artaxo, F. Y. Ishida, R. C. Mueller, S. R. Saleska, K. T. Wiedemann, B. J. M. Bohannan, and J. L. Green
Biogeosciences, 12, 6337–6349, https://doi.org/10.5194/bg-12-6337-2015, https://doi.org/10.5194/bg-12-6337-2015, 2015
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Fungi in the atmosphere can affect precipitation by nucleating the formation of clouds and ice. This process is important over the Amazon rainforest where precipitation is limited by the types and amount of airborne particles. We found that the total and metabolically active fungi communities were dominated by different taxonomic groups, and the active community unexpectedly contained many lichen fungi, which are effective at nucleating ice.
W. Y. Dong, X. Y. Zhang, X. Y. Liu, X. L. Fu, F. S. Chen, H. M. Wang, X. M. Sun, and X. F. Wen
Biogeosciences, 12, 5537–5546, https://doi.org/10.5194/bg-12-5537-2015, https://doi.org/10.5194/bg-12-5537-2015, 2015
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We examined how N and P addition influenced soil microbial community composition and enzyme activities in subtropical China. The results showed that C and N cycling enzymes were more sensitive to nutrient additions than P cycling enzymes and Gram-positive bacteria were most closely related to soil nutrient cycling enzymes. Combined additions of N and P fertilizer are recommended to promote soil fertility and microbial activity in this kind of plantation.
T. Bush, I. B. Butler, A. Free, and R. J. Allen
Biogeosciences, 12, 3713–3724, https://doi.org/10.5194/bg-12-3713-2015, https://doi.org/10.5194/bg-12-3713-2015, 2015
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Despite their global importance, redox reactions mediated by microorganisms are often crudely represented in biogeochemical models. We show that including the dynamics of microbial growth in such a model can cause sudden shifts between redox states in response to an environmental change. We identify the conditions required for these redox regime shifts, and predict that they are likely in the modern day sulfur and nitrogen cycles, and potentially the iron cycle in the ancient ocean.
P. K. Gao, G. Q. Li, H. M. Tian, Y. S. Wang, H. W. Sun, and T. Ma
Biogeosciences, 12, 3403–3414, https://doi.org/10.5194/bg-12-3403-2015, https://doi.org/10.5194/bg-12-3403-2015, 2015
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Microbial communities in injected water are expected to have a significant influence on those of reservoir strata in long-term water-flooding petroleum reservoirs. We thereby investigated the similarities and differences in microbial communities in water samples collected from the wellhead and downhole of injection wells, and from production wells in a homogeneous reservoir and a heterogeneous reservoir using high-throughput sequencing.
V. Marteinsson, A. Klonowski, E. Reynisson, P. Vannier, B. D. Sigurdsson, and M. Ólafsson
Biogeosciences, 12, 1191–1203, https://doi.org/10.5194/bg-12-1191-2015, https://doi.org/10.5194/bg-12-1191-2015, 2015
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Colonization of life on Surtsey has been observed systematically since the formation of the island. Microbial colonization and the influence of associate vegetation and birds on viable counts of environmental bacteria at the surface of the Surtsey was explored for the first time in diverse surface soils. Also, hot subsurface samples deep in the centre of this volcanic island were collected. Both uncultivated bacteria and archaea were found in the subsurface samples collected below 145 m.
J. Fröhlich-Nowoisky, C. Ruzene Nespoli, D. A. Pickersgill, P. E. Galand, I. Müller-Germann, T. Nunes, J. Gomes Cardoso, S. M. Almeida, C. Pio, M. O. Andreae, R. Conrad, U. Pöschl, and V. R. Després
Biogeosciences, 11, 6067–6079, https://doi.org/10.5194/bg-11-6067-2014, https://doi.org/10.5194/bg-11-6067-2014, 2014
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We have investigated the presence of archaea as well as their amoA gene diversity in aerosol particles collected over 1 year in central Europe and found that, within the 16S and amoA gene, Thaumarchaeota prevail and experience a diversity peak in fall, while only few Euryarchaeota were detected primarily in spring. We also compared the results with airborne archaea from Cape Verde and observe that the proportions of Euryarchaeota seem to be enhanced in coastal air compared to continental air.
A. L. Gagliano, W. D'Alessandro, M. Tagliavia, F. Parello, and P. Quatrini
Biogeosciences, 11, 5865–5875, https://doi.org/10.5194/bg-11-5865-2014, https://doi.org/10.5194/bg-11-5865-2014, 2014
Cited articles
Bhatia, M., Sharp, M., and Foght, J.: Distinct bacterial communities exist beneath a High Arctic polythermal glacier, Appl. Environ. Microbiol., 72, 5838–5845, 2006.
Bottrell, S. H. and Tranter, M.: Sulphide oxidation under partially anoxic conditions at the bed of the Haut Glacier d'Arolla, Switzerland, Hydrol. Process., 16, 2363–2368, 2002.
Boyd, E. S., Lange, R. K., Mitchell, A. C., Havig, J. R., Hamilton, T. L., Lafrenière, M. J., Shock, E. L., Peters, J. W., and Skidmore, M.: Diversity, abundance, and potential activity of nitrifying and nitrate-reducing microbial assemblages in a subglacial ecosystem, Appl. Environ. Microbiol., 77, 4778–4787, 2011.
Boyd, E. S., Hamilton, T. L., Havig, J. R., Skidmore, M. L., and Shock, E. L.: Chemolithotrophic primary production in a subglacial ecosystem, Appl. Environ. Microbiol., 80, 6146–6153, 2014.
Buzzini, P., Turchetti, B., Diolaiuti, G., D'Agata, C., Martini, A., and Smiraglia, C.: Culturable yeasts in the meltwaters draining from two glaciers in the Italian Alps, Ann. Glaciol., 40, 119–122, 2005.
Cameron, K. A., Stibal, M., Hawkings, J. R., Mikkelsen, A. B., Telling, J., Kohler, T. J., Gözdereliler, E., Zarsky, J. D., Wadham, J. L., and Jacobsen, C. S.: Meltwater export of prokaryotic cells from the Greenand ice sheet, Environ. Microbiol., 19, https://doi.org/10.1111/1462-2920, 2016.
Christner, B. C., Skidmore, M. L., Priscu, J. C., Tranter, M., and Foreman, C. M.: Bacteria in subglacial environments, in Psychrophiles: from Biodiversity to Biotechnology, edited by: Margesin, R., Schinner, F., Marx, J.-C., and Gerday, C., Springer-Verlag, Berlin, 51–71, 2008.
Christner, B. C., Priscu, J. C., Achberger, A. M., Barbante, C., Carter, S. P., Christianson, K., Michaud, A. B., Mikucki, J. A., Mitchell, A. C., Skidmore, M. L., and Vick-Majors, T. J.: A microbial ecosystem beneath the West Antarctic ice sheet, Nature, 512, 310–313, 2014.
Cutting, R. S., Coker, V. S., Fellowes, J. W., Lloyd, J. R., and Vaughan, D. J.: Mineralogical and morphological constraints on the reduction of Fe(III) minerals by Geobacter sulfurreducens, Geochim. Cosmochim. Acta, 73, 4004–4022, 2009.
Dallmann, W. K., Hjelle, A., Ohta, Y., Salvigsen, O., Bjornerud, M. G., Hauser, E. C., Maher, H. D., and Craddock, C.: Geological map of Svalbard 1:100 000: Sheet B11G Van Keulenfjorden, Norsk Polarinstitutt, Oslo, 1990.
Death, R., Wadham, J. L., Monteiro, F., Le Brocq, A. M., Tranter, M., Ridgwell, A., Dutkiewicz, S., and Raiswell, R.: Antarctic ice sheet fertilises the Southern Ocean, Biogeosciences, 11, 2635–2643, https://doi.org/10.5194/bg-11-2635-2014, 2014.
Direito, S. O. L., Marees, A., and Röling, F. M.: Sensitive life detection strategies for low-biomass environments: optimizing extraction of nucleic acids adsorbing to terrestrial and Mars analogue minerals, FEMS Microbial Ecol., 81, 111–123, 2012.
Edgar, R. C.: Search and clustering orders of magnitude faster than BLAST, Bioinformatics, 26, 2460–2461, 2010.
Edgar, R. C.: UPARSE: highly accurate OUT sequences from microbial amplicon reads, Nature Methods, 10, 996–998, 2011.
Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C., and Knight, R.: UCHIME improves sensitivity and speed of chimera detection, Bioinformatics, 27, 2194–2200, 2011.
Fisher, T. M. and Schulze-Makuch, D.: Nutrient and population dynamics in a subglacial reservoir: a simulation case study of the Blood Falls ecosystem with implications for astrobiology, Int. J. Astrobiol., 12, 304–311, 2013.
Foght, J., Aislabie, J., Turner, S., Brown, C. E., Ryburn, J., Saul, D. J., and Lawson, W.: Culturable bacteria in subglacial sediments ad ice from two southern hemisphere glaciers, Microbial Ecol., 47, 329–340, 2004.
Gaidos, E., Lanoil, B., Thorsteinsson, T., Graham, A., Skidmore, M., Han, S.-K., Rust, T., and Popp, B.: A viable microbial community in a subglacial volcanic crater lake, Iceland, Astrobiology, 4, 327–344, 2004.
Gunnars, A., Blomqvist, S., Johansson, P., and Andersson, C.: Formation of Fe(III) oxyhydroxide colloids in freshwater and brackish seawater, with incorporation of phosphate and calcium, Geochim. Cosmochim. Acta, 66, 745–758, 2002.
Hall, B. L. and Denton, G. H.: Holocene history of the Wilson Piedmont Glacier along the southern Scott Coast, Antarctica, The Holocene, 12, 619–627, 2002.
Hamilton, T. L., Peters, J. W., Skidmore, M. L., and Boyd, E. S.: Molecular evidence for an active endogenous microbiome beneath glacial ice, ISME, 7, 1402–1412, 2013.
Harrold, Z. R., Skidmore, M. L., Hamilton, T. L., Desch, L., Amada, K., van Gelder, W., Glover, K., Roden, E. R., and Boyd, E. S.: Aerobic and anaerobic thiosulfate oxidation by a cold-adapted, subglacial chemoautotroph, Appl. Environ. Microbiol., 82, 1486–1495, 2016.
Hawkings, J. R., Wadham, J. L., Tranter, M., Raiswell, R., Benning, L. G., Statham, P. J., Tedstone, A., Nienow, P., Lee, K., and Telling, J.: Ice sheets as a significant source of highly reactive nanoparticulate iron to the oceans, Nature Comm., 5, 3929, https://doi.org/10.1038/ncomms4929, 2014.
Henrikson, N., Higgins, A. K., Kalsbeek, F., and Pulvertaft, T. C. R.: Greenland from Archaean to Quaternary: descriptive text to the geological map of Greenland, 1:2 500 000, Geology of Greenland Survey Bulletin, 185, 2000.
Hodson, A. J. and Ferguson, R. I.: Fluvial suspended sediment transport from cold and warm-based glaciers in Svalbard, Earth Surf. Process. Landforms, 24, 957–974, 1999.
Hodson, A., Anesio, A. M., Tranter, M., Fountain, A., Osborn, M., Priscu, J., Laybourn-Parru, J., and Sattler, B.: Glacial ecosystems, Ecol. Monogr., 78, 41–67, 2008.
Jansson, P., Kohler, J., and Pohjola, V. A.: Characteristics of basal ice at Engabreen, northern Norway, Ann. Glaciol., 22, 114–120, 1996.
Kaštovská, K., Stibal, M., Šabacká, M., Černá, B., Šantrůčková, H., and Elster, J.: Microbial community structure and ecology of subglacial sediments in two polythermal Svalbard glaciers characterized by epifluorescence microscopy and PLFA, Polar Biol., 30, 277–287, 2007.
Knoblauch, C., Sahm, K., and Jørgensen, B. B.: Psychrophilic sulfate-reducing bacteria isolated from permanently cold Arctic marine sediments: description of Desulfofrigus oceanense gen. nov., sp. nov., Desulfofrigus fragile sp. nov., Desulfofaba gelida gen. nov., sp. nov., Desulfotalea psychrophila gen. nov., sp. nov. and Desulfotalea arctica sp. nov., International Journal of Systematic and Evolutionary Microbiology, 49, 1631–1643, 1999.
Kosta, J. E. and Nealson, K. H.: Dissolution and reduction of magnetite by bacteria, Environ. Sci. Technol., 29, 2535–2540, 1995.
Lane, D. J.: 16S/23S rRNA sequencing, in: Nucleic Acid Techniques in Bacterial Systematics, edited by: Stackenbradt, E. and Goodfellow, M., Wiley, Chichester, 115–175, 1991.
Lanoil, B., Skidmore, M., Priscu, J. C., Han, S., Foo, W., Vogel, S. W., Tulaczyk, S., and Engelhardt, H.: Bacteria beneath the West Antarctic Ice Sheet, Environ. Microbiol., 11, 609–615, 2009.
Liesack, W. and Finster, K.: Phylogenetic analysis of five strains of gram-negative, obligately anaerobic, sulphur-reducing bacteria and description of Desulfuromusa gen. nov., including Desulfuromusa kysingii sp. nov., Desulfuromusa bakii sp. nov., and Desulfuromusa succinoxidans sp. nov., International Journal of Systematic Bacteriology, 44, 753–758, 1994.
Lloyd, J. R.: Microbial reduction of metals and radionuclides, FEMS Microbiol. Rev., 27, 411–425, 2003.
Lonergan, D. J., Jenter, H. J., Coates, J. D., Phillips, E. J. P., Schmidt, T. M., and Lovley, D. R.: Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria, J. Bacteriol., 178, 2402–2408, 1996.
Lovley, D. R. and Phillips, E. J. P.: Availability of ferric iron for microbial reduction in bottom sediments of the freshwater tidal Potomac River, Appl. Environ. Microbiol., 52, 751–757, 1986a.
Lovley, D. R. and Phillips, E. J. P.: Organic-matter mineralization with reduction of ferric iron in anaerobic sediments, Appl. Environ. Microbiol., 51, 683–689, 1986b.
Marteinsson, V. T., Rúnarsson, Á., Stefánsson, A., Thorsteinsson, T., Jóhannesson, T., Magnússon, S. H., Reynisson, E., Einarsson, B., Wade, N., Morrison, H. G., and Gaidos, E.: Microbial communities in the subglacial waters of the Vatnajökull ice cap, Iceland, The International Society for Microbial Ecology Journal, 7, 427–437, 2013.
Mikucki, J. A. and Priscu, J. C.: Bacterial diversity associated with Blood Falls, a subglacial outflow from the Taylor Glacier, Antarctica, Appl. Environ. Microbiol., 73, 4029–4039, 2007.
Miller, T. L. and Wolin, M. J.: A serum bottle modification of the Hungate technique for cultivating obligate anaerobes, Appl. Microbiol., 27, 985–987, 1974.
Mitchell, A., Brown, G. H., and Fuge, R.: Minor and trace element export from glacierized Alpine headwater catchment (Haut Glacier d'Arolla, Switzerland), Hydrol. Process., 15, 3499–3524, 2001.
Mitchell, A. C., Lafrenière, M. J., Skidmore, M. L., and Boyd, E. S.: Influence of bedrock mineral composition on microbial diversity in a subglacial environment, Geology, 41, 855–858, 2013.
Montross, S. N., Skidmore, M., Tranter, M., Kivimäki, A.-L., and Parkes, R. J.: A microbial driver of chemical weathering in glaciated systems, Geology, 41, 215–218, 2012.
Muyzer, G., de Waal, E. C., and Uitterlinder, A. G.: Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA, Appl. Environ. Microbiol., 59, 695–700, 1993.
Neal, A. L., Rosso, K. M., Geesey, G. G., Gorby, Y. A., and Little, B. J.: Surface structure effects on direct reduction of iron oxides by Shewanella oneidensis, Geochim. Cosmochim. Acta, 67, 4489–4503, 2003.
Nevin, K. P., Holmes, D. E., Woodard, T. L., Hinlein, E. S., Ostendorf, D. W., and Lovley, D. R.: Geobacter bemidjiensis sp. nov. and Geobacter psychrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates, International Journal of Systematic and Evolutionary Microbiology, 55, 1667–1674, 2005.
Nixon, S. L., Cockell, C. S., and Tranter, M.: Limitations to a microbial iron cycle on Mars, Planet. Space Sci., 72, 116–128, 2012.
Nixon, S. L., Telling, J. P., Wadham, J. L., and Cockell, C. S.: Uncultured Environmental Isolate, available at: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA374495, 2017.
O'Donnell, E. C., Wadham, J. L., Lis, G. P., Tranter, M., Pickard, A. E., Stibal, M., Dewsbury, P., and Fitzsimons, S.: Identification and analysis of low-molecular-weight dissolved organic carbon in subglacial basal ice ecosystems by ion chromatography, Biogeosciences, 13, 3833–3846, https://doi.org/10.5194/bg-13-3833-2016, 2016.
Priscu, J. C., Adams, E. E., Lyons, W. B., Voytek, M. A., Mogk, D. W., Brown, R. L., McKay, C. P., Takacs, C. D., Welch, K. A., Wolf, C. F., Kirshtein, J. D., and Avci, R.: Geomicrobiology of subglacial ice above Lake Vostok, Antarctica, Science, 286, 2141–2144, 1999.
Raiswell, R., Benning, L. G., Davidson, L., Tranter, M., and Tulaczyk, S.: Schwertmannite in wet, acid, and oxic microenvironments beneath polar and polythermal glaciers, Geology, 37, 431–434, 2009.
Ramamoorthy, S., Sass, H., Langner, H., Schumann, P., Kroppenstedt, R. M., Spring, S., Overmann, J., and Rosenzweig, R. F.: Desulfosporosinus lacus sp. nov., a sulfate-reducing bacterium isolated from pristine freshwater lake sediments, International Journal of Systematic and Evolutionary Microbiology, 56, 2729–2736, 2006.
Roden, E. E. and Zachara, J. M.: Microbial reduction of crystalline iron(III) oxides: Influence of oxide surface area and potential for cell growth, Environ. Sci. Technol., 30, 1618–1628, 1996.
Sass, H., Overmann, J., Rütters, H., Babenzien, H.-D., and Cypionka, H.: Desulfosporomusa polytropa gen. nov., sp. nov., a novel sulfate-reducing bacterium from sediments of an oligotrophic lake, Arch. Microbiol., 182, 204–211, 2004.
Schink, B.: Fermentation of 2,3-butanediol by Pelobacter carbinolicus sp. nov. and Pelobacter propionicus sp. nov., and evidence for propionate formation from C2 compounds, Arch. Microbiol., 137, 33–41, 1984.
Sharp, M., Parkes, J., Cragg, B., Fairchild, I. J., Lamb, H., and Tranter, M.: Widespread bacterial populations at glacier beds and their relationship to rock weathering and carbon cycling, Geology, 27, 107–110, 1999.
Shelobolina, E. S., Nevin, K. P., Blakeney-Hayward, J. D., Johnsen, C. V., Plaia, T. W., Krader, P., Woodard, T., Holmes, D. E., Gaw Van Praagh, C. V., and Lovley, D. R.: Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses, International Journal of Systematic and Evolutionary Microbiology, 57, 126–135, 2007.
Shelobolina, E. S., Vrionis, H. A., Findlay, R. H., and Lovley, D. R.: Geobacter uraniireducens sp. nov., isolated from subsurface sediment undergoing uranium bioremediation, International Journal of Systematic and Evolutionary Microbiology, 58, 1075–1078, 2008.
Sheridan, P. P., Miteva, V. I., and Brenchley, J. E.: Phylogenetic analysis of anaerobic psychrophilic enrichment cultures obtained from a Greenland glacier ice core, Appl. Environ. Microbiol., 69, 2153–2160, 2003.
Skidmore, M. L., Foght, J. M., and Sharp, M. J.: Microbial life beneath a high Arctic glacier, Appl. Environ. Microbiol., 66, 3214–3220, 2000.
Skidmore, M., Anderson, S. P., Sharp, M., Foght, J., and Lanoil, B. D.: Comparison of microbial community compositions of two subglacial environments reveals a possible role for microbes in chemical weathering processes, Appl. Environ. Microbiol., 71, 6986–6997, 2005.
Statham, P. J., Skidmore, M., and Tranter, M.: Inputs of glacially derived dissolved and colloidal iron to the coastal ocean and implications for primary productivity, Global Biogeochem. Cy., 22, GB3032, https://doi.org/10.1029/2007GB003106, 2008.
Stibal, M., Wdham, J. L., Lis, G. P., Telling, J. P., Pancost, R. D., Dubnick, A., Sharp, M. J., Lawson, E. C., Butler, C. E., Hasan, F., Tranter, M., and Anesio, A. M. B.: Methanogenic potential of Arctic and Antarctic subglacial environments with contrasting organic carbon sources, Glob. Change Biol., 18, 3332–3345, https://doi.org/10.1111/j.1365-2486.2012.02763.x, 2012.
Stibal, M., Wadham, J. L., Lis, G. P., Telling, J., Pancost, R. D., Dubnick, A., Sharp, M. J., Lawson, E. C., Butler, C. E. H., Hasan, F., Tranter, M., and Anesio, A. M.: Methanogenic potential of Arctic and Antarctic subglacial environments with contrasting organic carbon sources, Glob. Change Biol., 18, 3332–3345, 2016.
Stookey, L. L.: Ferrozine – a new spectrophotometric reagent for iron, Anal. Chem., 42, 779–781, 1970.
Sundal, A. V., Shepherd, A., Nienow, P., Hanna, E., Palmer, S., and Huybrechts, P.: Melt-induced speed-up of Greenland ice sheet offset by efficient subglacial drainage, Nature, 469, 521–524, 2011.
Sung, Y., Fletcher, K. E., Ritalahti, K. M., Apkarian, R. P., Ramos-HernÃ!`ndez, N., Sanford, R. A., Mesbah, N. M., and Löffler, F. E.: Geobacter lovleyi sp. nov. Strain SZ, a novel metal-reducing and tetrachloroethene-dechlorinating bacterium, Appl. Environ. Microbiol., 72, 2775–2782, 2006.
Telling, J., Boyd, E. S., Bone, N., Jones, E. L., Tranter, M., MacFarlane, J. W., Martin, P. G., Wadham, J. L., Lamarche-Gagnon, G., Skidmore, M. L., Hamilton, T. L., Hill, E., Jackson, M., and Hodgson, D. A.: Rock communition as a source of hydrogen for subglacial ecosystems, Nature Geosci., 8, 851–855, 2015.
Ten Brink, N. W. and Weidick, A.: Greenland ice sheet history since the last glaciation, Quaternary Res., 4, 429–440, 1974.
Tranter, M., Skidmore, M., and Wadham, J.: Hydrological controls on microbial communities in subglacial environments, Hydrol. Process., 19, 995–998, 2005.
Vandieken, V., Mußmann, M., Niemann, H., and Jørgensen, B. B.: Desulfuromonas svalbardensis sp. nov. and Desulfuromusa ferrireducens sp. nov., psychrophilic, Fe(III)-reducing bacteria isolated from Arctic sediments, Svalbard, International Journal of Systematic and Evolutionary Microbiology, 56, 1133–1139, 2006.
Wadham, J. L. and Nuttall, A.-M.: Multiphase formation of superimposed ice during a mass-balance year at a maritime high-Arctic glacier, J. Glaciol., 48, 545–555, 2002.
Wadham, J. L., Arndt, S., Tulaczyk, S., Stibal, M., Tranter, M., Telling, J., Lis, G. P., Lawson, E., Ridgwell, A., Dubnick, A., Sharp, M. J., Anesio, A. M., and Butler, C. E. H.: Potential methane reservoirs beneath Antarctica, Nature, 488, 633–637, 2012.
Wynn, P. M., Hodson, A., and Heaton, T.: Chemical and isotopic switching within the subglacial environment of a High Arctic glacier, Biogeochemistry, 78, 173–193, 2006.
Yde, J. C., Finster, K. W., Raiswell, R., Steffensen, J. P., Heinemeier, J. Olsen, J., Gunnlaugsson, H. P., and Nielson, O. B.: Basal ice microbiology at the margin of the Greenland ice sheet, Ann. Glaciol., 51, 71–79, 2010.
Short summary
Despite their permanently cold and dark characteristics, subglacial environments (glacier ice–sediment interface) are known to harbour active microbial communities. However, the role of microbial iron cycling in these environments is poorly understood. Here we show that subglacial sediments harbour active iron-reducing microorganisms, and they appear to be cold-adapted. These results may have important implications for global biogeochemical iron cycling and export to marine ecosystems.
Despite their permanently cold and dark characteristics, subglacial environments (glacier...
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