Articles | Volume 17, issue 3
https://doi.org/10.5194/bg-17-771-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-17-771-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
14 Feb 2020
Research article |
| 14 Feb 2020
Localized basal area affects soil respiration temperature sensitivity in a coastal deciduous forest
Stephanie C. Pennington
CORRESPONDING AUTHOR
Joint Global Change Research Institute, Pacific Northwest National
Laboratory, 5825 University Research Ct. #3500, College Park, MD 20740,
USA
Nate G. McDowell
Pacific Northwest National Laboratory, Biological Sciences Division,
Richland, WA 99354, USA
J. Patrick Megonigal
Smithsonian Environmental Research Center, Edgewater, MD 21037, USA
James C. Stegen
Pacific Northwest National Laboratory, Biological Sciences Division,
Richland, WA 99354, USA
Ben Bond-Lamberty
Joint Global Change Research Institute, Pacific Northwest National
Laboratory, 5825 University Research Ct. #3500, College Park, MD 20740,
USA
Related authors
Jeff W. Atkins, Elizabeth Agee, Alexandra Barry, Kyla M. Dahlin, Kalyn Dorheim, Maxim S. Grigri, Lisa T. Haber, Laura J. Hickey, Aaron G. Kamoske, Kayla Mathes, Catherine McGuigan, Evan Paris, Stephanie C. Pennington, Carly Rodriguez, Autym Shafer, Alexey Shiklomanov, Jason Tallant, Christopher M. Gough, and Ben Bond-Lamberty
Earth Syst. Sci. Data, 13, 943–952, https://doi.org/10.5194/essd-13-943-2021, https://doi.org/10.5194/essd-13-943-2021, 2021
Short summary
Short summary
The fortedata R package is an open data notebook from the Forest Resilience Threshold Experiment (FoRTE) – a modeling and manipulative field experiment that tests the effects of disturbance severity and disturbance type on carbon cycling dynamics in a temperate forest. The data included help to interpret how carbon cycling processes respond over time to disturbance.
Chonggang Xu, Bradley Christoffersen, Zachary Robbins, Ryan Knox, Rosie A. Fisher, Rutuja Chitra-Tarak, Martijn Slot, Kurt Solander, Lara Kueppers, Charles Koven, and Nate McDowell
Geosci. Model Dev., 16, 6267–6283, https://doi.org/10.5194/gmd-16-6267-2023, https://doi.org/10.5194/gmd-16-6267-2023, 2023
Short summary
Short summary
We introduce a plant hydrodynamic model for the U.S. Department of Energy (DOE)-sponsored model, the Functionally Assembled Terrestrial Ecosystem Simulator (FATES). To better understand this new model system and its functionality in tropical forest ecosystems, we conducted a global parameter sensitivity analysis at Barro Colorado Island, Panama. We identified the key parameters that affect the simulated plant hydrodynamics to guide both modeling and field campaign studies.
Patrick J. Neale, J. Patrick Megonigal, Maria Tzortziou, Elizabeth A. Canuel, Christina R. Pondell, and Hannah Morrissette
EGUsphere, https://doi.org/10.5194/egusphere-2023-2329, https://doi.org/10.5194/egusphere-2023-2329, 2023
Short summary
Short summary
Adsorption/desorption incubations were conducted with tidal marsh soils to understand the differential sorption behavior of colored vs non-colored dissolved organic carbon. The wetland soils varied in organic content and a range of salinities fresh to 35 was used. Soils primarily adsorbed colored organic carbon and desorbed non-colored organic carbon. Sorption capacity increased with salinity, implying that salinity variations may shift composition of dissolved carbon in tidal marsh waters.
Kalyn Dorheim, Skylar Gering, Robert Gieseke, Corinne Hartin, Leeya Pressburger, Alexey N. Shiklomanov, Steve J. Smith, Claudia Tebaldi, Dawn Woodard, and Ben Bond-Lamberty
EGUsphere, https://doi.org/10.5194/egusphere-2023-1477, https://doi.org/10.5194/egusphere-2023-1477, 2023
Short summary
Short summary
Hector is an easy-to-use global climate-carbon cycle model. With its quick run time Hector can provide climate information from a run in a fraction of a second. Hector models global and annual basis. Here we present an updated version of the model, Hector V3. In this manuscript, we document Hector’s new features. Hector V3 is capable of reproducing historical observations and its future temperature projections are consistent with more complex models.
Emily B. Graham, Hyun-Seob Song, Samantha Grieger, Vanessa A. Garayburu-Caruso, James C. Stegen, Kevin D. Bladon, and Allison N. Myers-Pigg
Biogeosciences, 20, 3449–3457, https://doi.org/10.5194/bg-20-3449-2023, https://doi.org/10.5194/bg-20-3449-2023, 2023
Short summary
Short summary
Intensifying wildfires are increasing pyrogenic organic matter (PyOM) production and its impact on water quality. Recent work indicates that PyOM may have a greater impact on aquatic biogeochemistry than previously assumed, driven by higher bioavailability. We provide a full assessment of the potential bioavailability of PyOM across its chemical spectrum. We indicate that PyOM can be actively transformed within the river corridor and, therefore, may be a growing source of riverine C emissions.
James C. Stegen, Vanessa A. Garayburu-Caruso, Robert E. Danczak, Amy E. Goldman, Lupita Renteria, Joshua M. Torgeson, and Jacqueline Hager
Biogeosciences, 20, 2857–2867, https://doi.org/10.5194/bg-20-2857-2023, https://doi.org/10.5194/bg-20-2857-2023, 2023
Short summary
Short summary
Chemical reactions in river sediments influence how clean the water is and how much greenhouse gas comes out of a river. Our study investigates why some sediments have higher rates of chemical reactions than others. We find that to achieve high rates, sediments need to have two things: only a few different kinds of molecules, but a lot of them. This result spans about 80 rivers such that it could be a general rule, helpful for predicting the future of rivers and our planet.
Lingcheng Li, Yilin Fang, Zhonghua Zheng, Mingjie Shi, Marcos Longo, Charles D. Koven, Jennifer A. Holm, Rosie A. Fisher, Nate G. McDowell, Jeffrey Chambers, and L. Ruby Leung
Geosci. Model Dev., 16, 4017–4040, https://doi.org/10.5194/gmd-16-4017-2023, https://doi.org/10.5194/gmd-16-4017-2023, 2023
Short summary
Short summary
Accurately modeling plant coexistence in vegetation demographic models like ELM-FATES is challenging. This study proposes a repeatable method that uses machine-learning-based surrogate models to optimize plant trait parameters in ELM-FATES. Our approach significantly improves plant coexistence modeling, thus reducing errors. It has important implications for modeling ecosystem dynamics in response to climate change.
Yilin Fang, L. Ruby Leung, Charles D. Koven, Gautam Bisht, Matteo Detto, Yanyan Cheng, Nate McDowell, Helene Muller-Landau, S. Joseph Wright, and Jeffrey Q. Chambers
Geosci. Model Dev., 15, 7879–7901, https://doi.org/10.5194/gmd-15-7879-2022, https://doi.org/10.5194/gmd-15-7879-2022, 2022
Short summary
Short summary
We develop a model that integrates an Earth system model with a three-dimensional hydrology model to explicitly resolve hillslope topography and water flow underneath the land surface to understand how local-scale hydrologic processes modulate vegetation along water availability gradients. Our coupled model can be used to improve the understanding of the diverse impact of local heterogeneity and water flux on nutrient availability and plant communities.
William Kew, Allison Myers-Pigg, Christine Chang, Sean Colby, Josie Eder, Malak Tfaily, Jeffrey Hawkes, Rosalie Chu, and James Stegen
EGUsphere, https://doi.org/10.5194/egusphere-2022-1105, https://doi.org/10.5194/egusphere-2022-1105, 2022
Short summary
Short summary
Natural organic matter (OM) chemistry is often studied with mass spectrometry, but poor use of these data can lead to incorrect outcomes. We review causes of the problems, study them experimentally, and develop a model to guide the use of OM data. We show that the large amount of information from mass spectrometry can overcome technical issues underlying incorrect inferences. The model can guide proper use of mass spectrometry to study OM chemistry, thereby avoiding spurious inferences.
Yilin Fang, L. Ruby Leung, Ryan Knox, Charlie Koven, and Ben Bond-Lamberty
Geosci. Model Dev., 15, 6385–6398, https://doi.org/10.5194/gmd-15-6385-2022, https://doi.org/10.5194/gmd-15-6385-2022, 2022
Short summary
Short summary
Accounting for water movement in the soil and water transport within the plant is important for plant growth in Earth system modeling. We implemented different numerical approaches for a plant hydrodynamic model and compared their impacts on the simulated aboveground biomass (AGB) at single points and globally. We found care should be taken when discretizing the number of soil layers for numerical simulations as it can significantly affect AGB if accuracy and computational costs are of concern.
James C. Stegen, Sarah J. Fansler, Malak M. Tfaily, Vanessa A. Garayburu-Caruso, Amy E. Goldman, Robert E. Danczak, Rosalie K. Chu, Lupita Renteria, Jerry Tagestad, and Jason Toyoda
Biogeosciences, 19, 3099–3110, https://doi.org/10.5194/bg-19-3099-2022, https://doi.org/10.5194/bg-19-3099-2022, 2022
Short summary
Short summary
Rivers are vital to Earth, and in rivers, organic matter (OM) is an energy source for microbes that make greenhouse gas and remove contaminants. Predicting Earth’s future requires understanding how and why river OM is transformed. Our results help meet this need. We found that the processes influencing OM transformations diverge between river water and riverbed sediments. This can be used to build new models for predicting the future of rivers and, in turn, the Earth system.
Dong-Gill Kim, Ben Bond-Lamberty, Youngryel Ryu, Bumsuk Seo, and Dario Papale
Biogeosciences, 19, 1435–1450, https://doi.org/10.5194/bg-19-1435-2022, https://doi.org/10.5194/bg-19-1435-2022, 2022
Short summary
Short summary
As carbon (C) and greenhouse gas (GHG) research has adopted appropriate technology and approach (AT&A), low-cost instruments, open-source software, and participatory research and their results were well accepted by scientific communities. In terms of cost, feasibility, and performance, the integration of low-cost and low-technology, participatory and networking-based research approaches can be AT&A for enhancing C and GHG research in developing countries.
Jinshi Jian, Xuan Du, Juying Jiao, Xiaohua Ren, Karl Auerswald, Ryan Stewart, Zeli Tan, Jianlin Zhao, Daniel L. Evans, Guangju Zhao, Nufang Fang, Wenyi Sun, Chao Yue, and Ben Bond-Lamberty
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2022-87, https://doi.org/10.5194/essd-2022-87, 2022
Manuscript not accepted for further review
Short summary
Short summary
Field soil loss and sediment yield due to surface runoff observations were compiled into a database named AWESOME: Archive for Water Erosion and Sediment Outflow MEasurements. Annual soil erosion data from 1985 geographic sites and 75 countries have been compiled into AWESOME. This database aims to be an open framework for the scientific community to share field-based annual soil erosion measurements, enabling better understanding of the spatial and temporal variability of annual soil erosion.
Aditi Sengupta, Sarah J. Fansler, Rosalie K. Chu, Robert E. Danczak, Vanessa A. Garayburu-Caruso, Lupita Renteria, Hyun-Seob Song, Jason Toyoda, Jacqueline Hager, and James C. Stegen
Biogeosciences, 18, 4773–4789, https://doi.org/10.5194/bg-18-4773-2021, https://doi.org/10.5194/bg-18-4773-2021, 2021
Short summary
Short summary
Conceptual models link microbes with the environment but are untested. We test a recent model using riverbed sediments. We exposed sediments to disturbances, going dry and becoming wet again. As the length of dry conditions got longer, there was a sudden shift in the ecology of microbes, chemistry of organic matter, and rates of microbial metabolism. We propose a new model based on feedbacks initiated by disturbance that cascade across biological, chemical, and functional aspects of the system.
Dawn L. Woodard, Alexey N. Shiklomanov, Ben Kravitz, Corinne Hartin, and Ben Bond-Lamberty
Geosci. Model Dev., 14, 4751–4767, https://doi.org/10.5194/gmd-14-4751-2021, https://doi.org/10.5194/gmd-14-4751-2021, 2021
Short summary
Short summary
We have added a representation of the permafrost carbon feedback to the simple, open-source global carbon–climate model Hector and calibrated the results to be consistent with historical data and Earth system model projections. Our results closely match previous work, estimating around 0.2 °C of warming from permafrost this century. This capability will be useful to explore uncertainties in this feedback and for coupling with integrated assessment models for policy and economic analysis.
Eva Sinha, Kate Calvin, Ben Bond-Lamberty, Beth Drewniak, Dan Ricciuto, Khachik Sargsyan, Yanyan Cheng, Carl Bernacchi, and Caitlin Moore
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2021-244, https://doi.org/10.5194/gmd-2021-244, 2021
Preprint withdrawn
Short summary
Short summary
Perennial bioenergy crops are not well represented in global land models, despite projected increase in their production. Our study expands Energy Exascale Earth System Model (E3SM) Land Model (ELM) to include perennial bioenergy crops and calibrates the model for miscanthus and switchgrass. The calibrated model captures the seasonality and magnitude of carbon and energy fluxes. This study provides the foundation for future research examining the impact of perennial bioenergy crop expansion.
Rafael Poyatos, Víctor Granda, Víctor Flo, Mark A. Adams, Balázs Adorján, David Aguadé, Marcos P. M. Aidar, Scott Allen, M. Susana Alvarado-Barrientos, Kristina J. Anderson-Teixeira, Luiza Maria Aparecido, M. Altaf Arain, Ismael Aranda, Heidi Asbjornsen, Robert Baxter, Eric Beamesderfer, Z. Carter Berry, Daniel Berveiller, Bethany Blakely, Johnny Boggs, Gil Bohrer, Paul V. Bolstad, Damien Bonal, Rosvel Bracho, Patricia Brito, Jason Brodeur, Fernando Casanoves, Jérôme Chave, Hui Chen, Cesar Cisneros, Kenneth Clark, Edoardo Cremonese, Hongzhong Dang, Jorge S. David, Teresa S. David, Nicolas Delpierre, Ankur R. Desai, Frederic C. Do, Michal Dohnal, Jean-Christophe Domec, Sebinasi Dzikiti, Colin Edgar, Rebekka Eichstaedt, Tarek S. El-Madany, Jan Elbers, Cleiton B. Eller, Eugénie S. Euskirchen, Brent Ewers, Patrick Fonti, Alicia Forner, David I. Forrester, Helber C. Freitas, Marta Galvagno, Omar Garcia-Tejera, Chandra Prasad Ghimire, Teresa E. Gimeno, John Grace, André Granier, Anne Griebel, Yan Guangyu, Mark B. Gush, Paul J. Hanson, Niles J. Hasselquist, Ingo Heinrich, Virginia Hernandez-Santana, Valentine Herrmann, Teemu Hölttä, Friso Holwerda, James Irvine, Supat Isarangkool Na Ayutthaya, Paul G. Jarvis, Hubert Jochheim, Carlos A. Joly, Julia Kaplick, Hyun Seok Kim, Leif Klemedtsson, Heather Kropp, Fredrik Lagergren, Patrick Lane, Petra Lang, Andrei Lapenas, Víctor Lechuga, Minsu Lee, Christoph Leuschner, Jean-Marc Limousin, Juan Carlos Linares, Maj-Lena Linderson, Anders Lindroth, Pilar Llorens, Álvaro López-Bernal, Michael M. Loranty, Dietmar Lüttschwager, Cate Macinnis-Ng, Isabelle Maréchaux, Timothy A. Martin, Ashley Matheny, Nate McDowell, Sean McMahon, Patrick Meir, Ilona Mészáros, Mirco Migliavacca, Patrick Mitchell, Meelis Mölder, Leonardo Montagnani, Georgianne W. Moore, Ryogo Nakada, Furong Niu, Rachael H. Nolan, Richard Norby, Kimberly Novick, Walter Oberhuber, Nikolaus Obojes, A. Christopher Oishi, Rafael S. Oliveira, Ram Oren, Jean-Marc Ourcival, Teemu Paljakka, Oscar Perez-Priego, Pablo L. Peri, Richard L. Peters, Sebastian Pfautsch, William T. Pockman, Yakir Preisler, Katherine Rascher, George Robinson, Humberto Rocha, Alain Rocheteau, Alexander Röll, Bruno H. P. Rosado, Lucy Rowland, Alexey V. Rubtsov, Santiago Sabaté, Yann Salmon, Roberto L. Salomón, Elisenda Sánchez-Costa, Karina V. R. Schäfer, Bernhard Schuldt, Alexandr Shashkin, Clément Stahl, Marko Stojanović, Juan Carlos Suárez, Ge Sun, Justyna Szatniewska, Fyodor Tatarinov, Miroslav Tesař, Frank M. Thomas, Pantana Tor-ngern, Josef Urban, Fernando Valladares, Christiaan van der Tol, Ilja van Meerveld, Andrej Varlagin, Holm Voigt, Jeffrey Warren, Christiane Werner, Willy Werner, Gerhard Wieser, Lisa Wingate, Stan Wullschleger, Koong Yi, Roman Zweifel, Kathy Steppe, Maurizio Mencuccini, and Jordi Martínez-Vilalta
Earth Syst. Sci. Data, 13, 2607–2649, https://doi.org/10.5194/essd-13-2607-2021, https://doi.org/10.5194/essd-13-2607-2021, 2021
Short summary
Short summary
Transpiration is a key component of global water balance, but it is poorly constrained from available observations. We present SAPFLUXNET, the first global database of tree-level transpiration from sap flow measurements, containing 202 datasets and covering a wide range of ecological conditions. SAPFLUXNET and its accompanying R software package
sapfluxnetrwill facilitate new data syntheses on the ecological factors driving water use and drought responses of trees and forests.
Dong-Gill Kim, Ben Bond-Lamberty, Youngryel Ryu, Bumsuk Seo, and Dario Papale
Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-85, https://doi.org/10.5194/bg-2021-85, 2021
Manuscript not accepted for further review
Short summary
Short summary
While greenhouse gas (GHG) research has adopted highly advanced technology some have adopted appropriate technology and approach (AT&A) such as low-cost instrument, open source software and participatory research and their results were well accepted by scientific communities. In terms of cost, feasibility and performance, integration of low-cost and low-technology, participatory and networking based research approaches can be AT&A for enhancing GHG research in developing countries.
Genevieve L. Noyce and J. Patrick Megonigal
Biogeosciences, 18, 2449–2463, https://doi.org/10.5194/bg-18-2449-2021, https://doi.org/10.5194/bg-18-2449-2021, 2021
Short summary
Short summary
Methane (CH4) is a potent greenhouse gas that contributes to global radiative forcing. A mechanistic understanding of how wetland CH4 cycling will respond to global warming is crucial for improving prognostic models. We present results from the first 4 years of a novel whole-ecosystem warming experiment in a coastal wetland, showing that warming increases CH4 emissions and identifying four potential mechanisms that can be added to future modeling efforts.
Jeff W. Atkins, Elizabeth Agee, Alexandra Barry, Kyla M. Dahlin, Kalyn Dorheim, Maxim S. Grigri, Lisa T. Haber, Laura J. Hickey, Aaron G. Kamoske, Kayla Mathes, Catherine McGuigan, Evan Paris, Stephanie C. Pennington, Carly Rodriguez, Autym Shafer, Alexey Shiklomanov, Jason Tallant, Christopher M. Gough, and Ben Bond-Lamberty
Earth Syst. Sci. Data, 13, 943–952, https://doi.org/10.5194/essd-13-943-2021, https://doi.org/10.5194/essd-13-943-2021, 2021
Short summary
Short summary
The fortedata R package is an open data notebook from the Forest Resilience Threshold Experiment (FoRTE) – a modeling and manipulative field experiment that tests the effects of disturbance severity and disturbance type on carbon cycling dynamics in a temperate forest. The data included help to interpret how carbon cycling processes respond over time to disturbance.
Jinshi Jian, Rodrigo Vargas, Kristina Anderson-Teixeira, Emma Stell, Valentine Herrmann, Mercedes Horn, Nazar Kholod, Jason Manzon, Rebecca Marchesi, Darlin Paredes, and Ben Bond-Lamberty
Earth Syst. Sci. Data, 13, 255–267, https://doi.org/10.5194/essd-13-255-2021, https://doi.org/10.5194/essd-13-255-2021, 2021
Short summary
Short summary
Field soil-to-atmosphere CO2 flux (soil respiration, Rs) observations were compiled into a global database (SRDB) a decade ago. Here, we restructured and updated the database to the fifth version, SRDB-V5, with data published through 2017 included. SRDB-V5 aims to be a data framework for the scientific community to share seasonal to annual field Rs measurements, and it provides opportunities for the scientific community to better understand the spatial and temporal variability of Rs.
Kalyn Dorheim, Steven J. Smith, and Ben Bond-Lamberty
Geosci. Model Dev., 14, 365–375, https://doi.org/10.5194/gmd-14-365-2021, https://doi.org/10.5194/gmd-14-365-2021, 2021
Short summary
Short summary
Simple climate models are frequently used in research and decision-making communities because of their tractability and low computational cost. Simple climate models are diverse, including highly idealized and process-based models. Here we present a hybrid approach that combines the strength of two types of simple climate models in a flexible framework. This hybrid approach has provided insights into the climate system and opens an avenue for investigating radiative forcing uncertainties.
Jinshi Jian, Xuan Du, Ryan D. Stewart, Zeli Tan, and Ben Bond-Lamberty
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2020-283, https://doi.org/10.5194/essd-2020-283, 2020
Preprint withdrawn
Short summary
Short summary
Field soil loss due to surface runoff observations were compiled into a global database (SoilErosionDB). The database focuses on three erosion-related metrics – surface runoff, soil erosion, and nutrient leaching – and also records background information. Data from 99 geographic sites and 22 countries around the world have been compiled into SoilErosionDB. SoilErosionDB aims to be a data framework for the scientific community to share field-based soil erosion measurements.
Charles D. Koven, Ryan G. Knox, Rosie A. Fisher, Jeffrey Q. Chambers, Bradley O. Christoffersen, Stuart J. Davies, Matteo Detto, Michael C. Dietze, Boris Faybishenko, Jennifer Holm, Maoyi Huang, Marlies Kovenock, Lara M. Kueppers, Gregory Lemieux, Elias Massoud, Nathan G. McDowell, Helene C. Muller-Landau, Jessica F. Needham, Richard J. Norby, Thomas Powell, Alistair Rogers, Shawn P. Serbin, Jacquelyn K. Shuman, Abigail L. S. Swann, Charuleka Varadharajan, Anthony P. Walker, S. Joseph Wright, and Chonggang Xu
Biogeosciences, 17, 3017–3044, https://doi.org/10.5194/bg-17-3017-2020, https://doi.org/10.5194/bg-17-3017-2020, 2020
Short summary
Short summary
Tropical forests play a crucial role in governing climate feedbacks, and are incredibly diverse ecosystems, yet most Earth system models do not take into account the diversity of plant traits in these forests and how this diversity may govern feedbacks. We present an approach to represent diverse competing plant types within Earth system models, test this approach at a tropical forest site, and explore how the representation of disturbance and competition governs traits of the forest community.
Kurt C. Solander, Brent D. Newman, Alessandro Carioca de Araujo, Holly R. Barnard, Z. Carter Berry, Damien Bonal, Mario Bretfeld, Benoit Burban, Luiz Antonio Candido, Rolando Célleri, Jeffery Q. Chambers, Bradley O. Christoffersen, Matteo Detto, Wouter A. Dorigo, Brent E. Ewers, Savio José Filgueiras Ferreira, Alexander Knohl, L. Ruby Leung, Nate G. McDowell, Gretchen R. Miller, Maria Terezinha Ferreira Monteiro, Georgianne W. Moore, Robinson Negron-Juarez, Scott R. Saleska, Christian Stiegler, Javier Tomasella, and Chonggang Xu
Hydrol. Earth Syst. Sci., 24, 2303–2322, https://doi.org/10.5194/hess-24-2303-2020, https://doi.org/10.5194/hess-24-2303-2020, 2020
Short summary
Short summary
We evaluate the soil moisture response in the humid tropics to El Niño during the three most recent super El Niño events. Our estimates are compared to in situ soil moisture estimates that span five continents. We find the strongest and most consistent soil moisture decreases in the Amazon and maritime southeastern Asia, while the most consistent increases occur over eastern Africa. Our results can be used to improve estimates of soil moisture in tropical ecohydrology models at multiple scales.
Adam S. Ward, Steven M. Wondzell, Noah M. Schmadel, Skuyler Herzog, Jay P. Zarnetske, Viktor Baranov, Phillip J. Blaen, Nicolai Brekenfeld, Rosalie Chu, Romain Derelle, Jennifer Drummond, Jan H. Fleckenstein, Vanessa Garayburu-Caruso, Emily Graham, David Hannah, Ciaran J. Harman, Jase Hixson, Julia L. A. Knapp, Stefan Krause, Marie J. Kurz, Jörg Lewandowski, Angang Li, Eugènia Martí, Melinda Miller, Alexander M. Milner, Kerry Neil, Luisa Orsini, Aaron I. Packman, Stephen Plont, Lupita Renteria, Kevin Roche, Todd Royer, Catalina Segura, James Stegen, Jason Toyoda, Jacqueline Hager, and Nathan I. Wisnoski
Hydrol. Earth Syst. Sci., 23, 5199–5225, https://doi.org/10.5194/hess-23-5199-2019, https://doi.org/10.5194/hess-23-5199-2019, 2019
Short summary
Short summary
The movement of water and solutes between streams and their shallow, connected subsurface is important to many ecosystem functions. These exchanges are widely expected to vary with stream flow across space and time, but these assumptions are seldom tested across basin scales. We completed more than 60 experiments across a 5th-order river basin to document these changes, finding patterns in space but not time. We conclude space-for-time and time-for-space substitutions are not good assumptions.
Adam S. Ward, Jay P. Zarnetske, Viktor Baranov, Phillip J. Blaen, Nicolai Brekenfeld, Rosalie Chu, Romain Derelle, Jennifer Drummond, Jan H. Fleckenstein, Vanessa Garayburu-Caruso, Emily Graham, David Hannah, Ciaran J. Harman, Skuyler Herzog, Jase Hixson, Julia L. A. Knapp, Stefan Krause, Marie J. Kurz, Jörg Lewandowski, Angang Li, Eugènia Martí, Melinda Miller, Alexander M. Milner, Kerry Neil, Luisa Orsini, Aaron I. Packman, Stephen Plont, Lupita Renteria, Kevin Roche, Todd Royer, Noah M. Schmadel, Catalina Segura, James Stegen, Jason Toyoda, Jacqueline Hager, Nathan I. Wisnoski, and Steven M. Wondzell
Earth Syst. Sci. Data, 11, 1567–1581, https://doi.org/10.5194/essd-11-1567-2019, https://doi.org/10.5194/essd-11-1567-2019, 2019
Short summary
Short summary
Studies of river corridor exchange commonly focus on characterization of the physical, chemical, or biological system. As a result, complimentary systems and context are often lacking, which may limit interpretation. Here, we present a characterization of all three systems at 62 sites in a 5th-order river basin, including samples of surface water, hyporheic water, and sediment. These data will allow assessment of interacting processes in the river corridor.
Aditi Sengupta, Julia Indivero, Cailene Gunn, Malak M. Tfaily, Rosalie K. Chu, Jason Toyoda, Vanessa L. Bailey, Nicholas D. Ward, and James C. Stegen
Biogeosciences, 16, 3911–3928, https://doi.org/10.5194/bg-16-3911-2019, https://doi.org/10.5194/bg-16-3911-2019, 2019
Short summary
Short summary
Coastal terrestrial–aquatic interfaces represent dynamic yet poorly understood zones of biogeochemical cycles. We evaluated associations between the soil salinity gradient, molecular-level soil-C chemistry, and microbial community assembly processes in a coastal watershed on the Olympic Peninsula in Washington, USA. Results revealed salinity-driven gradients in molecular-level C chemistry, with little evidence of an association between C chemistry and microbial community assembly processes.
Elias C. Massoud, Chonggang Xu, Rosie A. Fisher, Ryan G. Knox, Anthony P. Walker, Shawn P. Serbin, Bradley O. Christoffersen, Jennifer A. Holm, Lara M. Kueppers, Daniel M. Ricciuto, Liang Wei, Daniel J. Johnson, Jeffrey Q. Chambers, Charlie D. Koven, Nate G. McDowell, and Jasper A. Vrugt
Geosci. Model Dev., 12, 4133–4164, https://doi.org/10.5194/gmd-12-4133-2019, https://doi.org/10.5194/gmd-12-4133-2019, 2019
Short summary
Short summary
We conducted a comprehensive sensitivity analysis to understand behaviors of a demographic vegetation model within a land surface model. By running the model 5000 times with changing input parameter values, we found that (1) the photosynthetic capacity controls carbon fluxes, (2) the allometry is important for tree growth, and (3) the targeted carbon storage is important for tree survival. These results can provide guidance on improved model parameterization for a better fit to observations.
Robert Link, Abigail Snyder, Cary Lynch, Corinne Hartin, Ben Kravitz, and Ben Bond-Lamberty
Geosci. Model Dev., 12, 1477–1489, https://doi.org/10.5194/gmd-12-1477-2019, https://doi.org/10.5194/gmd-12-1477-2019, 2019
Short summary
Short summary
Earth system models (ESMs) produce the highest-quality future climate data available, but they are costly to run, so only a few runs from each model are publicly available. What is needed are emulators that tell us what would have happened, if we had been able to perform as many ESM runs as we might have liked. Much of the existing work on emulators has focused on deterministic projections of average values. Here we present a way to imbue emulators with the variability seen in ESM runs.
Katherine Calvin, Pralit Patel, Leon Clarke, Ghassem Asrar, Ben Bond-Lamberty, Ryna Yiyun Cui, Alan Di Vittorio, Kalyn Dorheim, Jae Edmonds, Corinne Hartin, Mohamad Hejazi, Russell Horowitz, Gokul Iyer, Page Kyle, Sonny Kim, Robert Link, Haewon McJeon, Steven J. Smith, Abigail Snyder, Stephanie Waldhoff, and Marshall Wise
Geosci. Model Dev., 12, 677–698, https://doi.org/10.5194/gmd-12-677-2019, https://doi.org/10.5194/gmd-12-677-2019, 2019
Short summary
Short summary
This paper describes GCAM v5.1, an open source model that represents the linkages between energy, water, land, climate, and economic systems. GCAM examines the future evolution of these systems through the end of the 21st century. It can be used to examine, for example, how changes in population, income, or technology cost might alter crop production, energy demand, or water withdrawals, or how changes in one region’s demand for energy affect energy, water, and land in other regions.
Katrina E. Bennett, Theodore J. Bohn, Kurt Solander, Nathan G. McDowell, Chonggang Xu, Enrique Vivoni, and Richard S. Middleton
Hydrol. Earth Syst. Sci., 22, 709–725, https://doi.org/10.5194/hess-22-709-2018, https://doi.org/10.5194/hess-22-709-2018, 2018
Short summary
Short summary
We applied the Variable Infiltration Capacity hydrologic model to examine scenarios of change under climate and landscape disturbances in the San Juan River basin, a major sub-watershed of the Colorado River basin. Climate change coupled with landscape disturbance leads to reduced streamflow in the San Juan River basin. Disturbances are expected to be widespread in this region. Therefore, accounting for these changes within the context of climate change is imperative for water resource planning.
Yannick Le Page, Douglas Morton, Corinne Hartin, Ben Bond-Lamberty, José Miguel Cardoso Pereira, George Hurtt, and Ghassem Asrar
Earth Syst. Dynam., 8, 1237–1246, https://doi.org/10.5194/esd-8-1237-2017, https://doi.org/10.5194/esd-8-1237-2017, 2017
Short summary
Short summary
Fires damage large areas of eastern Amazon forests when ignitions from human activity coincide with droughts, while more humid central and western regions are less affected. Here, we use a fire model to estimate that fire activity could increase by an order of magnitude without climate mitigation. Our results show that avoiding further agricultural expansion can limit fire ignitions but that tackling climate change is essential to insulate the interior Amazon through the 21st century.
Cary Lynch, Corinne Hartin, Min Chen, and Ben Bond-Lamberty
Biogeosciences Discuss., https://doi.org/10.5194/bg-2017-405, https://doi.org/10.5194/bg-2017-405, 2017
Revised manuscript has not been submitted
Short summary
Short summary
Heterotrophic respiration (RH) is a large part of the carbon cycle, but it is poorly simulated by climate models. We examine the relationships between RH and key climate variables to understand this uncertainty in observations and from climate models. Compared to observations, models overestimate both the RH trend and climatological relationships. In the future, the relationship between RH and temperature is strong and can be used to explore a wide range of future scenarios.
James C. Stegen, Carolyn G. Anderson, Ben Bond-Lamberty, Alex R. Crump, Xingyuan Chen, and Nancy Hess
Biogeosciences, 14, 4341–4354, https://doi.org/10.5194/bg-14-4341-2017, https://doi.org/10.5194/bg-14-4341-2017, 2017
Short summary
Short summary
CO2 loss from soil to the atmosphere (
soil respiration) is a key ecosystem function, especially in systems with permafrost. We find that soil respiration shows a non-linear threshold at permafrost depths > 140 cm and that the number of large trees governs soil respiration. This suggests that remote sensing could be used to estimate spatial variation in soil respiration and (with knowledge of key thresholds) empirically constrain models that predict ecosystem responses to permafrost thaw.
Amy E. Goldman, Emily B. Graham, Alex R. Crump, David W. Kennedy, Elvira B. Romero, Carolyn G. Anderson, Karl L. Dana, Charles T. Resch, Jim K. Fredrickson, and James C. Stegen
Biogeosciences, 14, 4229–4241, https://doi.org/10.5194/bg-14-4229-2017, https://doi.org/10.5194/bg-14-4229-2017, 2017
Short summary
Short summary
The history of river inundation influences shoreline sediment biogeochemical cycling and microbial dynamics. Sediment exhibited a binary respiration response to rewetting, in which respiration from less recently saturated sediment was suppressed relative to more recently saturated sediment, likely due to inhibition of fungal metabolic activity. River shorelines should likely be integrated as a distinct environment into hydrobiogeochemical models to predict watershed biogeochemical function.
Cary Lynch, Corinne Hartin, Ben Bond-Lamberty, and Ben Kravitz
Earth Syst. Sci. Data, 9, 281–292, https://doi.org/10.5194/essd-9-281-2017, https://doi.org/10.5194/essd-9-281-2017, 2017
Short summary
Short summary
Pattern scaling climate model output is a computationally efficient way to produce a large amount of data for purposes of uncertainty quantification. Using a multi-model ensemble we explore pattern scaling methodologies across two future forcing scenarios. We find that the simple least squares approach to pattern scaling produces a close approximation of actual model output, and we use this as a justification for the creation of an open-access pattern library at multiple time increments.
Ben Kravitz, Cary Lynch, Corinne Hartin, and Ben Bond-Lamberty
Geosci. Model Dev., 10, 1889–1902, https://doi.org/10.5194/gmd-10-1889-2017, https://doi.org/10.5194/gmd-10-1889-2017, 2017
Short summary
Short summary
Pattern scaling is a way of approximating regional changes without needing to run a full, complex global climate model. We compare two methods of pattern scaling for precipitation and evaluate which methods is
betterin particular circumstances. We also decompose precipitation into a CO2 portion and a non-CO2 portion. The methodologies discussed in this paper can help provide precipitation fields for other models for a wide variety of scenarios of future climate change.
Ben Bond-Lamberty, A. Peyton Smith, and Vanessa Bailey
Biogeosciences, 13, 6669–6681, https://doi.org/10.5194/bg-13-6669-2016, https://doi.org/10.5194/bg-13-6669-2016, 2016
Short summary
Short summary
We used a laboratory experiment to examine how climate change and permafrost melting might alter soils in high-latitude regions. Soils were subjected to two temperatures and drought, and gas emissions were monitored. Carbon dioxide fluxes were influenced by temperature, water, and soil nitrogen, while methane emissions were much smaller and linked only with nitrogen. This suggests that such soils may be very sensitive to changes in moisture as discontinuous permafrost thaws in interior Alaska.
Corinne A. Hartin, Benjamin Bond-Lamberty, Pralit Patel, and Anupriya Mundra
Biogeosciences, 13, 4329–4342, https://doi.org/10.5194/bg-13-4329-2016, https://doi.org/10.5194/bg-13-4329-2016, 2016
Cary Lynch, Corinne Hartin, Ben Bond-Lamberty, and Ben Kravitz
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2016-170, https://doi.org/10.5194/gmd-2016-170, 2016
Revised manuscript not accepted
Short summary
Short summary
Pattern scaling is used to explore uncertainty in future forcing scenarios and assess local climate sensitivity to global temperature change. This paper examines the two dominant pattern scaling methods using a multi-model ensemble with two future socio-economic storylines. We find that high latitudes show the strongest sensitivity to global temperature change and that the simple least squared regression approach to generation of patterns is a better fit to projected global temperature.
W. D. Collins, A. P. Craig, J. E. Truesdale, A. V. Di Vittorio, A. D. Jones, B. Bond-Lamberty, K. V. Calvin, J. A. Edmonds, S. H. Kim, A. M. Thomson, P. Patel, Y. Zhou, J. Mao, X. Shi, P. E. Thornton, L. P. Chini, and G. C. Hurtt
Geosci. Model Dev., 8, 2203–2219, https://doi.org/10.5194/gmd-8-2203-2015, https://doi.org/10.5194/gmd-8-2203-2015, 2015
Short summary
Short summary
The integrated Earth system model (iESM) has been developed as a
new tool for projecting the joint human-climate system. The
iESM is based upon coupling an integrated assessment model (IAM)
and an Earth system model (ESM) into a common modeling
infrastructure. By introducing heretofore-omitted
feedbacks between natural and societal drivers in iESM, we can improve
scientific understanding of the human-Earth system
dynamics.
C. A. Hartin, P. Patel, A. Schwarber, R. P. Link, and B. P. Bond-Lamberty
Geosci. Model Dev., 8, 939–955, https://doi.org/10.5194/gmd-8-939-2015, https://doi.org/10.5194/gmd-8-939-2015, 2015
Short summary
Short summary
Simple climate models play an integral role in policy and scientific communities. Hector v1.0 is an open-source, object-oriented, simple global climate carbon-cycle model. Hector reproduces the global historical trends of atmospheric [CO2], radiative forcing, and surface temperatures. Hector simulates all four representative concentration pathways with equivalent rates of change of key variables over time compared to current observations and other models.
B. Bond-Lamberty, J. P. Fisk, J. A. Holm, V. Bailey, G. Bohrer, and C. M. Gough
Biogeosciences, 12, 513–526, https://doi.org/10.5194/bg-12-513-2015, https://doi.org/10.5194/bg-12-513-2015, 2015
Short summary
Short summary
How will aging forests behave as they undergo ecological transitions? Can our models, which support scientific, policy, and management analyses, accurately simulate these transitions? We tested whether three forest ecosystem models could reproduce dynamics observed in an experimentally manipulated forest in northern Michigan, USA. None of the models fully captured the post-disturbance C fluxes observed, raising doubts about their ability to simulate tree death after moderate disturbances.
M. L. Kirwan, J. A. Langley, G. R. Guntenspergen, and J. P. Megonigal
Biogeosciences, 10, 1869–1876, https://doi.org/10.5194/bg-10-1869-2013, https://doi.org/10.5194/bg-10-1869-2013, 2013
Related subject area
Biogeochemistry: Land
Gross primary productivity and the predictability of CO2: more uncertainty in what we predict than how well we predict it
Scale variance in the carbon dynamics of fragmented, mixed-use landscapes estimated using model–data fusion
Seasonal controls override forest harvesting effects on the composition of dissolved organic matter mobilized from boreal forest soil organic horizons
Leaf carbon and nitrogen stoichiometric variation along environmental gradients
Carbon cycle extremes accelerate weakening of the land carbon sink in the late 21st century
Estimating oil-palm Si storage, Si return to soils, and Si losses through harvest in smallholder oil-palm plantations of Sumatra, Indonesia
Assessing the sensitivity of multi-frequency passive microwave vegetation optical depth to vegetation properties
Long-term additions of ammonium nitrate to montane forest ecosystems may cause limited soil acidification, even in presence of soil carbonate
Seasonal variation of mercury concentration of ancient olive groves of Lebanon
Soil organic matter diagenetic state informs boreal forest ecosystem feedbacks to climate change
Upscaling dryland carbon and water fluxes with artificial neural networks of optical, thermal, and microwave satellite remote sensing
Sun-induced fluorescence as a proxy for primary productivity across vegetation types and climates
Technical note: A view from space on global flux towers by MODIS and Landsat: the FluxnetEO data set
Changing sub-Arctic tundra vegetation upon permafrost degradation: impact on foliar mineral element cycling
Land Management Contributes significantly to observed Vegetation Browning in Syria during 2001–2018
MODIS Vegetation Continuous Fields tree cover needs calibrating in tropical savannas
Assessing the representation of the Australian carbon cycle in global vegetation models
Assessing the response of soil carbon in Australia to changing inputs and climate using a consistent modelling framework
Reviews and syntheses: Ongoing and emerging opportunities to improve environmental science using observations from the Advanced Baseline Imager on the Geostationary Operational Environmental Satellites
First pan-Arctic assessment of dissolved organic carbon in lakes of the permafrost region
The impact of wildfire on biogeochemical fluxes and water quality in boreal catchments
Examining the sensitivity of the terrestrial carbon cycle to the expression of El Niño
Subalpine grassland productivity increased with warmer and drier conditions, but not with higher N deposition, in an altitudinal transplantation experiment
Reviews and syntheses: Impacts of plant-silica–herbivore interactions on terrestrial biogeochemical cycling
Implementation of nitrogen cycle in the CLASSIC land model
Combined effects of ozone and drought stress on the emission of biogenic volatile organic compounds from Quercus robur L.
A bottom-up quantification of foliar mercury uptake fluxes across Europe
Lagged effects regulate the inter-annual variability of the tropical carbon balance
Spatial variations in terrestrial net ecosystem productivity and its local indicators
Nitrogen cycling in CMIP6 land surface models: progress and limitations
Decomposing reflectance spectra to track gross primary production in a subalpine evergreen forest
Sensitivity of 21st century simulated ecosystem indicators to model parameters, prescribed climate drivers, RCP scenarios and forest management actions for two Finnish boreal forest sites
Summarizing the state of the terrestrial biosphere in few dimensions
Patterns and trends of the dominant environmental controls of net biome productivity
Dissolved organic carbon mobilized from organic horizons of mature and harvested black spruce plots in a mesic boreal region
Ideas and perspectives: Proposed best practices for collaboration at cross-disciplinary observatories
Effects of leaf length and development stage on the triple oxygen isotope signature of grass leaf water and phytoliths: insights for a proxy of continental atmospheric humidity
Response of simulated burned area to historical changes in environmental and anthropogenic factors: a comparison of seven fire models
Estimation of coarse dead wood stocks in intact and degraded forests in the Brazilian Amazon using airborne lidar
Theoretical uncertainties for global satellite-derived burned area estimates
Estimating global gross primary productivity using chlorophyll fluorescence and a data assimilation system with the BETHY-SCOPE model
How representative are FLUXNET measurements of surface fluxes during temperature extremes?
Stable carbon and nitrogen isotopic composition of leaves, litter, and soils of various ecosystems along an elevational and land-use gradient at Mount Kilimanjaro, Tanzania
Comparison of CO2 and O2 fluxes demonstrate retention of respired CO2 in tree stems from a range of tree species
Tropical climate–vegetation–fire relationships: multivariate evaluation of the land surface model JSBACH
A global spatially contiguous solar-induced fluorescence (CSIF) dataset using neural networks
Technical note: A simple theoretical model framework to describe plant stomatal “sluggishness” in response to elevated ozone concentrations
Water-stress-induced breakdown of carbon–water relations: indicators from diurnal FLUXNET patterns
Shrub type dominates the vertical distribution of leaf C : N : P stoichiometry across an extensive altitudinal gradient
Estimation of gross land-use change and its uncertainty using a Bayesian data assimilation approach
István Dunkl, Nicole Lovenduski, Alessio Collalti, Vivek K. Arora, Tatiana Ilyina, and Victor Brovkin
Biogeosciences, 20, 3523–3538, https://doi.org/10.5194/bg-20-3523-2023, https://doi.org/10.5194/bg-20-3523-2023, 2023
Short summary
Short summary
Despite differences in the reproduction of gross primary productivity (GPP) by Earth system models (ESMs), ESMs have similar predictability of the global carbon cycle. We found that, although GPP variability originates from different regions and is driven by different climatic variables across the ESMs, the ESMs rely on the same mechanisms to predict their own GPP. This shows that the predictability of the carbon cycle is limited by our understanding of variability rather than predictability.
David T. Milodowski, T. Luke Smallman, and Mathew Williams
Biogeosciences, 20, 3301–3327, https://doi.org/10.5194/bg-20-3301-2023, https://doi.org/10.5194/bg-20-3301-2023, 2023
Short summary
Short summary
Model–data fusion (MDF) allows us to combine ecosystem models with Earth observation data. Fragmented landscapes, with a mosaic of contrasting ecosystems, pose a challenge for MDF. We develop a novel MDF framework to estimate the carbon balance of fragmented landscapes and show the importance of accounting for ecosystem heterogeneity to prevent scale-dependent bias in estimated carbon fluxes, disturbance fluxes in particular, and to improve ecological fidelity of the calibrated models.
Keri L. Bowering, Kate A. Edwards, and Susan E. Ziegler
Biogeosciences, 20, 2189–2206, https://doi.org/10.5194/bg-20-2189-2023, https://doi.org/10.5194/bg-20-2189-2023, 2023
Short summary
Short summary
Dissolved organic matter (DOM) mobilized from surface soils is a source of carbon (C) for deeper mineral horizons but also a mechanism of C loss. Composition of DOM mobilized in boreal forests varied more by season than as a result of forest harvesting. Results suggest reduced snowmelt and increased fall precipitation enhance DOM properties promoting mineral soil C stores. These findings, coupled with hydrology, can inform on soil C fate and boreal forest C balance in response to climate change.
Huiying Xu, Han Wang, I. Colin Prentice, and Sandy P. Harrison
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-87, https://doi.org/10.5194/bg-2023-87, 2023
Revised manuscript accepted for BG
Short summary
Short summary
Leaf carbon (C) and nitrogen (N) are crucial elements in leaf construction and physiological processes. This study reconciled the roles of phylogeny, species identity and climate in stoichiometric traits at individual and community levels. The variations in community-level leaf N and C : N ratio were captured by optimality-based models using climate data. Our results provide another approach to improve the representation of leaf stoichiometry in vegetation models to better couple N with C cycling.
Bharat Sharma, Jitendra Kumar, Auroop R. Ganguly, and Forrest M. Hoffman
Biogeosciences, 20, 1829–1841, https://doi.org/10.5194/bg-20-1829-2023, https://doi.org/10.5194/bg-20-1829-2023, 2023
Short summary
Short summary
Rising atmospheric carbon dioxide increases vegetation growth and causes more heatwaves and droughts. The impact of such climate extremes is detrimental to terrestrial carbon uptake capacity. We found that due to overall climate warming, about 88 % of the world's regions towards the end of 2100 will show anomalous losses in net biospheric productivity (NBP) rather than gains. More than 50 % of all negative NBP extremes were driven by the compound effect of dry, hot, and fire conditions.
Britta Greenshields, Barbara von der Lühe, Felix Schwarz, Harold J. Hughes, Aiyen Tjoa, Martyna Kotowska, Fabian Brambach, and Daniela Sauer
Biogeosciences, 20, 1259–1276, https://doi.org/10.5194/bg-20-1259-2023, https://doi.org/10.5194/bg-20-1259-2023, 2023
Short summary
Short summary
Silicon (Si) can have multiple beneficial effects on crops such as oil palms. In this study, we quantified Si concentrations in various parts of an oil palm (leaflets, rachises, fruit-bunch parts) to derive Si storage estimates for the total above-ground biomass of an oil palm and 1 ha of an oil-palm plantation. We proposed a Si balance by identifying Si return (via palm fronds) and losses (via harvest) in the system and recommend management measures that enhance Si cycling.
Luisa Schmidt, Matthias Forkel, Ruxandra-Maria Zotta, Samuel Scherrer, Wouter A. Dorigo, Alexander Kuhn-Régnier, Robin van der Schalie, and Marta Yebra
Biogeosciences, 20, 1027–1046, https://doi.org/10.5194/bg-20-1027-2023, https://doi.org/10.5194/bg-20-1027-2023, 2023
Short summary
Short summary
Vegetation attenuates natural microwave emissions from the land surface. The strength of this attenuation is quantified as the vegetation optical depth (VOD) parameter and is influenced by the vegetation mass, structure, water content, and observation wavelength. Here we model the VOD signal as a multi-variate function of several descriptive vegetation variables. The results help in understanding the effects of ecosystem properties on VOD.
Thomas Baer, Gerhard Furrer, Stephan Zimmermann, and Patrick Schleppi
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-38, https://doi.org/10.5194/bg-2023-38, 2023
Revised manuscript accepted for BG
Short summary
Short summary
Nitrogen (N) deposition to forest ecosystems is a matter of concern because it affects their nutrient status and make their soil acidic. We observed an ongoing acidification in a montane forest in central Switzerland even if the sub-soil of this site contains carbonates and is thus well-buffered. We experimentally added N to simulate a higher pollution and this increased the acidification. After 25 years of study, however, we can see first signs of recovery, also in under higher N deposition.
Nagham Tabaja, David Amouroux, Lamis Chalak, François Fourel, Emmanuel Tessier, Ihab Jomaa, Milad El Riachy, and Ilham Bentaleb
Biogeosciences, 20, 619–633, https://doi.org/10.5194/bg-20-619-2023, https://doi.org/10.5194/bg-20-619-2023, 2023
Short summary
Short summary
This study investigates the seasonality of the mercury (Hg) concentration of olive trees. Hg concentrations of foliage, stems, soil surface, and litter were analyzed on a monthly basis in ancient olive trees growing in two groves in Lebanon. Our study draws an adequate baseline for the eastern Mediterranean and for the region with similar climatic inventories on Hg vegetation uptake in addition to being a baseline for new studies on olive trees in the Mediterranean.
Allison N. Myers-Pigg, Karl Kaiser, Ronald Benner, and Susan E. Ziegler
Biogeosciences, 20, 489–503, https://doi.org/10.5194/bg-20-489-2023, https://doi.org/10.5194/bg-20-489-2023, 2023
Short summary
Short summary
Boreal forests, historically a global sink for atmospheric CO2, store carbon in vast soil reservoirs. To predict how such stores will respond to climate warming we need to understand climate–ecosystem feedbacks. We find boreal forest soil carbon stores are maintained through enhanced nitrogen cycling with climate warming, providing direct evidence for a key feedback. Further application of the approach demonstrated here will improve our understanding of the limits of climate–ecosystem feedbacks.
Matthew P. Dannenberg, Mallory L. Barnes, William K. Smith, Miriam R. Johnston, Susan K. Meerdink, Xian Wang, Russell L. Scott, and Joel A. Biederman
Biogeosciences, 20, 383–404, https://doi.org/10.5194/bg-20-383-2023, https://doi.org/10.5194/bg-20-383-2023, 2023
Short summary
Short summary
Earth's drylands provide ecosystem services to many people and will likely be strongly affected by climate change, but it is quite challenging to monitor the productivity and water use of dryland plants with satellites. We developed and tested an approach for estimating dryland vegetation activity using machine learning to combine information from multiple satellite sensors. Our approach excelled at estimating photosynthesis and water use largely due to the inclusion of satellite soil moisture.
Mark Pickering, Alessandro Cescatti, and Gregory Duveiller
Biogeosciences, 19, 4833–4864, https://doi.org/10.5194/bg-19-4833-2022, https://doi.org/10.5194/bg-19-4833-2022, 2022
Short summary
Short summary
This study explores two of the most recent products in carbon productivity estimation, FLUXCOM gross primary productivity (GPP), calculated by upscaling local measurements of CO2 exchange, and remotely sensed sun-induced chlorophyll a fluorescence (SIF). High-resolution SIF data are valuable in demonstrating similarity in the SIF–GPP relationship between vegetation covers, provide an independent probe of the FLUXCOM GPP model and demonstrate the response of SIF to meteorological fluctuations.
Sophia Walther, Simon Besnard, Jacob Allen Nelson, Tarek Sebastian El-Madany, Mirco Migliavacca, Ulrich Weber, Nuno Carvalhais, Sofia Lorena Ermida, Christian Brümmer, Frederik Schrader, Anatoly Stanislavovich Prokushkin, Alexey Vasilevich Panov, and Martin Jung
Biogeosciences, 19, 2805–2840, https://doi.org/10.5194/bg-19-2805-2022, https://doi.org/10.5194/bg-19-2805-2022, 2022
Short summary
Short summary
Satellite observations help interpret station measurements of local carbon, water, and energy exchange between the land surface and the atmosphere and are indispensable for simulations of the same in land surface models and their evaluation. We propose generalisable and efficient approaches to systematically ensure high quality and to estimate values in data gaps. We apply them to satellite data of surface reflectance and temperature with different resolutions at the stations.
Elisabeth Mauclet, Yannick Agnan, Catherine Hirst, Arthur Monhonval, Benoît Pereira, Aubry Vandeuren, Maëlle Villani, Justin Ledman, Meghan Taylor, Briana L. Jasinski, Edward A. G. Schuur, and Sophie Opfergelt
Biogeosciences, 19, 2333–2351, https://doi.org/10.5194/bg-19-2333-2022, https://doi.org/10.5194/bg-19-2333-2022, 2022
Short summary
Short summary
Arctic warming and permafrost degradation largely affect tundra vegetation. Wetter lowlands show an increase in sedges, whereas drier uplands favor shrub expansion. Here, we demonstrate that the difference in the foliar elemental composition of typical tundra vegetation species controls the change in local foliar elemental stock and potential mineral element cycling through litter production upon a shift in tundra vegetation.
Tiexi Chen, Renjie Guo, Qingyun Yan, Xin Chen, Shengjie Zhou, Chuanzhuang Liang, Xueqiong Wei, and Han Dolman
Biogeosciences, 19, 1515–1525, https://doi.org/10.5194/bg-19-1515-2022, https://doi.org/10.5194/bg-19-1515-2022, 2022
Short summary
Short summary
Currently people are very concerned about vegetation changes and their driving factors, including natural and anthropogenic drivers. In this study, a general browning trend is found in Syria during 2001–2018, indicated by the vegetation index. We found that land management caused by social unrest is the main cause of this browning phenomenon. The mechanism initially reported here highlights the importance of land management impacts at the regional scale.
Rahayu Adzhar, Douglas I. Kelley, Ning Dong, Charles George, Mireia Torello Raventos, Elmar Veenendaal, Ted R. Feldpausch, Oliver L. Phillips, Simon L. Lewis, Bonaventure Sonké, Herman Taedoumg, Beatriz Schwantes Marimon, Tomas Domingues, Luzmila Arroyo, Gloria Djagbletey, Gustavo Saiz, and France Gerard
Biogeosciences, 19, 1377–1394, https://doi.org/10.5194/bg-19-1377-2022, https://doi.org/10.5194/bg-19-1377-2022, 2022
Short summary
Short summary
The MODIS Vegetation Continuous Fields (VCF) product underestimates tree cover compared to field data and could be underestimating tree cover significantly across the tropics. VCF is used to represent land cover or validate model performance in many land surface and global vegetation models and to train finer-scaled Earth observation products. Because underestimation in VCF may render it unsuitable for training data and bias model predictions, it should be calibrated before use in the tropics.
Lina Teckentrup, Martin G. De Kauwe, Andrew J. Pitman, Daniel S. Goll, Vanessa Haverd, Atul K. Jain, Emilie Joetzjer, Etsushi Kato, Sebastian Lienert, Danica Lombardozzi, Patrick C. McGuire, Joe R. Melton, Julia E. M. S. Nabel, Julia Pongratz, Stephen Sitch, Anthony P. Walker, and Sönke Zaehle
Biogeosciences, 18, 5639–5668, https://doi.org/10.5194/bg-18-5639-2021, https://doi.org/10.5194/bg-18-5639-2021, 2021
Short summary
Short summary
The Australian continent is included in global assessments of the carbon cycle such as the global carbon budget, yet the performance of dynamic global vegetation models (DGVMs) over Australia has rarely been evaluated. We assessed simulations by an ensemble of dynamic global vegetation models over Australia and highlighted a number of key areas that lead to model divergence on both short (inter-annual) and long (decadal) timescales.
Juhwan Lee, Raphael A. Viscarra Rossel, Mingxi Zhang, Zhongkui Luo, and Ying-Ping Wang
Biogeosciences, 18, 5185–5202, https://doi.org/10.5194/bg-18-5185-2021, https://doi.org/10.5194/bg-18-5185-2021, 2021
Short summary
Short summary
We performed Roth C simulations across Australia and assessed the response of soil carbon to changing inputs and future climate change using a consistent modelling framework. Site-specific initialisation of the C pools with measurements of the C fractions is essential for accurate simulations of soil organic C stocks and composition at a large scale. With further warming, Australian soils will become more vulnerable to C loss: natural environments > native grazing > cropping > modified grazing.
Anam M. Khan, Paul C. Stoy, James T. Douglas, Martha Anderson, George Diak, Jason A. Otkin, Christopher Hain, Elizabeth M. Rehbein, and Joel McCorkel
Biogeosciences, 18, 4117–4141, https://doi.org/10.5194/bg-18-4117-2021, https://doi.org/10.5194/bg-18-4117-2021, 2021
Short summary
Short summary
Remote sensing has played an important role in the study of land surface processes. Geostationary satellites, such as the GOES-R series, can observe the Earth every 5–15 min, providing us with more observations than widely used polar-orbiting satellites. Here, we outline current efforts utilizing geostationary observations in environmental science and look towards the future of GOES observations in the carbon cycle, ecosystem disturbance, and other areas of application in environmental science.
Lydia Stolpmann, Caroline Coch, Anne Morgenstern, Julia Boike, Michael Fritz, Ulrike Herzschuh, Kathleen Stoof-Leichsenring, Yury Dvornikov, Birgit Heim, Josefine Lenz, Amy Larsen, Katey Walter Anthony, Benjamin Jones, Karen Frey, and Guido Grosse
Biogeosciences, 18, 3917–3936, https://doi.org/10.5194/bg-18-3917-2021, https://doi.org/10.5194/bg-18-3917-2021, 2021
Short summary
Short summary
Our new database summarizes DOC concentrations of 2167 water samples from 1833 lakes in permafrost regions across the Arctic to provide insights into linkages between DOC and environment. We found increasing lake DOC concentration with decreasing permafrost extent and higher DOC concentrations in boreal permafrost sites compared to tundra sites. Our study shows that DOC concentration depends on the environmental properties of a lake, especially permafrost extent, ecoregion, and vegetation.
Gustaf Granath, Christopher D. Evans, Joachim Strengbom, Jens Fölster, Achim Grelle, Johan Strömqvist, and Stephan J. Köhler
Biogeosciences, 18, 3243–3261, https://doi.org/10.5194/bg-18-3243-2021, https://doi.org/10.5194/bg-18-3243-2021, 2021
Short summary
Short summary
We measured element losses and impacts on water quality following a wildfire in Sweden. We observed the largest carbon and nitrogen losses during the fire and a strong pulse of elements 1–3 months after the fire that showed a fast (weeks) and a slow (months) release from the catchments. Total carbon export through water did not increase post-fire. Overall, we observed a rapid recovery of the biogeochemical cycling of elements within 3 years but still an annual net release of carbon dioxide.
Lina Teckentrup, Martin G. De Kauwe, Andrew J. Pitman, and Benjamin Smith
Biogeosciences, 18, 2181–2203, https://doi.org/10.5194/bg-18-2181-2021, https://doi.org/10.5194/bg-18-2181-2021, 2021
Short summary
Short summary
The El Niño–Southern Oscillation (ENSO) describes changes in the sea surface temperature patterns of the Pacific Ocean. This influences the global weather, impacting vegetation on land. There are two types of El Niño: central Pacific (CP) and eastern Pacific (EP). In this study, we explored the long-term impacts on the carbon balance on land linked to the two El Niño types. Using a dynamic vegetation model, we simulated what would happen if only either CP or EP El Niño events had occurred.
Matthias Volk, Matthias Suter, Anne-Lena Wahl, and Seraina Bassin
Biogeosciences, 18, 2075–2090, https://doi.org/10.5194/bg-18-2075-2021, https://doi.org/10.5194/bg-18-2075-2021, 2021
Short summary
Short summary
Grassland ecosystem services like forage production and greenhouse gas storage in the soil depend on plant growth.
In an experiment in the mountains with warming treatments, we found that despite dwindling soil water content, the grassland growth increased with up to +1.3 °C warming (annual mean) compared to present temperatures. Even at +2.4 °C the growth was still larger than at the reference site.
This suggests that plant growth will increase due to global warming in the near future.
Bernice C. Hwang and Daniel B. Metcalfe
Biogeosciences, 18, 1259–1268, https://doi.org/10.5194/bg-18-1259-2021, https://doi.org/10.5194/bg-18-1259-2021, 2021
Short summary
Short summary
Despite growing recognition of herbivores as important ecosystem engineers, many major gaps remain in our understanding of how silicon and herbivory interact to shape biogeochemical processes. We highlight the need for more research particularly in natural settings as well as on the potential effects of herbivory on terrestrial silicon cycling to understand potentially critical animal–plant–soil feedbacks.
Ali Asaadi and Vivek K. Arora
Biogeosciences, 18, 669–706, https://doi.org/10.5194/bg-18-669-2021, https://doi.org/10.5194/bg-18-669-2021, 2021
Short summary
Short summary
More than a quarter of the current anthropogenic CO2 emissions are taken up by land, reducing the atmospheric CO2 growth rate. This is because of the CO2 fertilization effect which benefits 80 % of global vegetation. However, if nitrogen and phosphorus nutrients cannot keep up with increasing atmospheric CO2, the magnitude of this terrestrial ecosystem service may reduce in future. This paper implements nitrogen constraints on photosynthesis in a model to understand the mechanisms involved.
Arianna Peron, Lisa Kaser, Anne Charlott Fitzky, Martin Graus, Heidi Halbwirth, Jürgen Greiner, Georg Wohlfahrt, Boris Rewald, Hans Sandén, and Thomas Karl
Biogeosciences, 18, 535–556, https://doi.org/10.5194/bg-18-535-2021, https://doi.org/10.5194/bg-18-535-2021, 2021
Short summary
Short summary
Drought events are expected to become more frequent with climate change. Along with these events atmospheric ozone is also expected to increase. Both can stress plants. Here we investigate to what extent these factors modulate the emission of volatile organic compounds (VOCs) from oak plants. We find an antagonistic effect between drought stress and ozone, impacting the emission of different BVOCs, which is indirectly controlled by stomatal opening, allowing plants to control their water budget.
Lena Wohlgemuth, Stefan Osterwalder, Carl Joseph, Ansgar Kahmen, Günter Hoch, Christine Alewell, and Martin Jiskra
Biogeosciences, 17, 6441–6456, https://doi.org/10.5194/bg-17-6441-2020, https://doi.org/10.5194/bg-17-6441-2020, 2020
Short summary
Short summary
Mercury uptake by trees from the air represents an important but poorly quantified pathway in the global mercury cycle. We determined mercury uptake fluxes by leaves and needles at 10 European forests which were 4 times larger than mercury deposition via rainfall. The amount of mercury taken up by leaves and needles depends on their age and growing height on the tree. Scaling up our measurements to the forest area of Europe, we estimate that each year 20 t of mercury is taken up by trees.
A. Anthony Bloom, Kevin W. Bowman, Junjie Liu, Alexandra G. Konings, John R. Worden, Nicholas C. Parazoo, Victoria Meyer, John T. Reager, Helen M. Worden, Zhe Jiang, Gregory R. Quetin, T. Luke Smallman, Jean-François Exbrayat, Yi Yin, Sassan S. Saatchi, Mathew Williams, and David S. Schimel
Biogeosciences, 17, 6393–6422, https://doi.org/10.5194/bg-17-6393-2020, https://doi.org/10.5194/bg-17-6393-2020, 2020
Short summary
Short summary
We use a model of the 2001–2015 tropical land carbon cycle, with satellite measurements of land and atmospheric carbon, to disentangle lagged and concurrent effects (due to past and concurrent meteorological events, respectively) on annual land–atmosphere carbon exchanges. The variability of lagged effects explains most 2001–2015 inter-annual carbon flux variations. We conclude that concurrent and lagged effects need to be accurately resolved to better predict the world's land carbon sink.
Erqian Cui, Chenyu Bian, Yiqi Luo, Shuli Niu, Yingping Wang, and Jianyang Xia
Biogeosciences, 17, 6237–6246, https://doi.org/10.5194/bg-17-6237-2020, https://doi.org/10.5194/bg-17-6237-2020, 2020
Short summary
Short summary
Mean annual net ecosystem productivity (NEP) is related to the magnitude of the carbon sink of a specific ecosystem, while its inter-annual variation (IAVNEP) characterizes the stability of such a carbon sink. Thus, a better understanding of the co-varying NEP and IAVNEP is critical for locating the major and stable carbon sinks on land. Based on daily NEP observations from eddy-covariance sites, we found local indicators for the spatially varying NEP and IAVNEP, respectively.
Taraka Davies-Barnard, Johannes Meyerholt, Sönke Zaehle, Pierre Friedlingstein, Victor Brovkin, Yuanchao Fan, Rosie A. Fisher, Chris D. Jones, Hanna Lee, Daniele Peano, Benjamin Smith, David Wårlind, and Andy J. Wiltshire
Biogeosciences, 17, 5129–5148, https://doi.org/10.5194/bg-17-5129-2020, https://doi.org/10.5194/bg-17-5129-2020, 2020
Rui Cheng, Troy S. Magney, Debsunder Dutta, David R. Bowling, Barry A. Logan, Sean P. Burns, Peter D. Blanken, Katja Grossmann, Sophia Lopez, Andrew D. Richardson, Jochen Stutz, and Christian Frankenberg
Biogeosciences, 17, 4523–4544, https://doi.org/10.5194/bg-17-4523-2020, https://doi.org/10.5194/bg-17-4523-2020, 2020
Short summary
Short summary
We measured reflected sunlight from an evergreen canopy for a year to detect changes in pigments that play an important role in regulating the seasonality of photosynthesis. Results show a strong mechanistic link between spectral reflectance features and pigment content, which is validated using a biophysical model. Our results show spectrally where, why, and when spectral features change over the course of the season and show promise for estimating photosynthesis remotely.
Jarmo Mäkelä, Francesco Minunno, Tuula Aalto, Annikki Mäkelä, Tiina Markkanen, and Mikko Peltoniemi
Biogeosciences, 17, 2681–2700, https://doi.org/10.5194/bg-17-2681-2020, https://doi.org/10.5194/bg-17-2681-2020, 2020
Short summary
Short summary
We assess the relative magnitude of uncertainty sources on ecosystem indicators of the 21st century climate change on two boreal forest sites. In addition to RCP and climate model uncertainties, we included the overlooked model parameter uncertainty and management actions in our analysis. Management was the dominant uncertainty factor for the more verdant southern site, followed by RCP, climate and parameter uncertainties. The uncertainties were estimated with canonical correlation analysis.
Guido Kraemer, Gustau Camps-Valls, Markus Reichstein, and Miguel D. Mahecha
Biogeosciences, 17, 2397–2424, https://doi.org/10.5194/bg-17-2397-2020, https://doi.org/10.5194/bg-17-2397-2020, 2020
Short summary
Short summary
To closely monitor the state of our planet, we require systems that can monitor
the observation of many different properties at the same time. We create
indicators that resemble the behavior of many different simultaneous
observations. We apply the method to create indicators representing the
Earth's biosphere. The indicators show a productivity gradient and a water
gradient. The resulting indicators can detect a large number of changes and
extremes in the Earth system.
Barbara Marcolla, Mirco Migliavacca, Christian Rödenbeck, and Alessandro Cescatti
Biogeosciences, 17, 2365–2379, https://doi.org/10.5194/bg-17-2365-2020, https://doi.org/10.5194/bg-17-2365-2020, 2020
Short summary
Short summary
This work investigates the sensitivity of terrestrial CO2 fluxes to climate drivers. We observed that CO2 flux is mostly controlled by temperature during the growing season and by radiation off season. We also observe that radiation importance is increasing over time while sensitivity to temperature is decreasing in Eurasia. Ultimately this analysis shows that ecosystem response to climate is changing, with potential repercussions for future terrestrial sink and land role in climate mitigation.
Keri L. Bowering, Kate A. Edwards, Karen Prestegaard, Xinbiao Zhu, and Susan E. Ziegler
Biogeosciences, 17, 581–595, https://doi.org/10.5194/bg-17-581-2020, https://doi.org/10.5194/bg-17-581-2020, 2020
Short summary
Short summary
We examined the effects of season and tree harvesting on the flow of water and the organic carbon (OC) it carries from boreal forest soils. We found that more OC was lost from the harvested forest because more precipitation reached the soil surface but that during periods of flushing in autumn and snowmelt a limit on the amount of water-extractable OC is reached. These results contribute to an increased understanding of carbon loss from boreal forest soils.
Jason Philip Kaye, Susan L. Brantley, Jennifer Zan Williams, and the SSHCZO team
Biogeosciences, 16, 4661–4669, https://doi.org/10.5194/bg-16-4661-2019, https://doi.org/10.5194/bg-16-4661-2019, 2019
Short summary
Short summary
Interdisciplinary teams can only capitalize on innovative ideas if members work well together through collegial and efficient use of field sites, instrumentation, samples, data, and model code. Thus, biogeoscience teams may benefit from developing a set of best practices for collaboration. We present one such example from a the Susquehanna Shale Hills critical zone observatory. Many of the themes from our example are universal, and they offer insights useful to other biogeoscience teams.
Anne Alexandre, Elizabeth Webb, Amaelle Landais, Clément Piel, Sébastien Devidal, Corinne Sonzogni, Martine Couapel, Jean-Charles Mazur, Monique Pierre, Frédéric Prié, Christine Vallet-Coulomb, Clément Outrequin, and Jacques Roy
Biogeosciences, 16, 4613–4625, https://doi.org/10.5194/bg-16-4613-2019, https://doi.org/10.5194/bg-16-4613-2019, 2019
Short summary
Short summary
This calibration study shows that despite isotope heterogeneity along grass leaves, the triple oxygen isotope composition of bulk leaf phytoliths can be estimated from the Craig and Gordon model, a mixing equation and a mean leaf water–phytolith fractionation exponent (lambda) of 0.521. The results strengthen the reliability of the 17O–excess of phytoliths to be used as a proxy of atmospheric relative humidity and open tracks for its use as an imprint of leaf water 17O–excess.
Lina Teckentrup, Sandy P. Harrison, Stijn Hantson, Angelika Heil, Joe R. Melton, Matthew Forrest, Fang Li, Chao Yue, Almut Arneth, Thomas Hickler, Stephen Sitch, and Gitta Lasslop
Biogeosciences, 16, 3883–3910, https://doi.org/10.5194/bg-16-3883-2019, https://doi.org/10.5194/bg-16-3883-2019, 2019
Short summary
Short summary
This study compares simulated burned area of seven global vegetation models provided by the Fire Model Intercomparison Project (FireMIP) since 1900. We investigate the influence of five forcing factors: atmospheric CO2, population density, land–use change, lightning and climate.
We find that the anthropogenic factors lead to the largest spread between models. Trends due to climate are mostly not significant but climate strongly influences the inter-annual variability of burned area.
Marcos A. S. Scaranello, Michael Keller, Marcos Longo, Maiza N. dos-Santos, Veronika Leitold, Douglas C. Morton, Ekena R. Pinagé, and Fernando Del Bon Espírito-Santo
Biogeosciences, 16, 3457–3474, https://doi.org/10.5194/bg-16-3457-2019, https://doi.org/10.5194/bg-16-3457-2019, 2019
Short summary
Short summary
The coarse dead wood component of the tropical forest carbon pool is rarely measured. For the first time, we developed models for predicting coarse dead wood in Amazonian forests by using airborne laser scanning data. Our models produced site-based estimates similar to independent field estimates found in the literature. Our study provides an approach for estimating coarse dead wood pools from remotely sensed data and mapping those pools over large scales in intact and degraded forests.
James Brennan, Jose L. Gómez-Dans, Mathias Disney, and Philip Lewis
Biogeosciences, 16, 3147–3164, https://doi.org/10.5194/bg-16-3147-2019, https://doi.org/10.5194/bg-16-3147-2019, 2019
Short summary
Short summary
We estimate the uncertainties associated with three global satellite-derived burned area estimates. The method provides unique uncertainties for the three estimates at the global scale for 2001–2013. We find uncertainties of 4 %–5.5 % in global burned area and uncertainties of 8 %–10 % in the frequently burning regions of Africa and Australia.
Alexander J. Norton, Peter J. Rayner, Ernest N. Koffi, Marko Scholze, Jeremy D. Silver, and Ying-Ping Wang
Biogeosciences, 16, 3069–3093, https://doi.org/10.5194/bg-16-3069-2019, https://doi.org/10.5194/bg-16-3069-2019, 2019
Short summary
Short summary
This study presents an estimate of global terrestrial photosynthesis. We make use of satellite chlorophyll fluorescence measurements, a visible indicator of photosynthesis, to optimize model parameters and estimate photosynthetic carbon uptake. This new framework incorporates nonlinear, process-based understanding of the link between fluorescence and photosynthesis, an advance on past approaches. This will aid in the utility of fluorescence to quantify terrestrial carbon cycle feedbacks.
Sophie V. J. van der Horst, Andrew J. Pitman, Martin G. De Kauwe, Anna Ukkola, Gab Abramowitz, and Peter Isaac
Biogeosciences, 16, 1829–1844, https://doi.org/10.5194/bg-16-1829-2019, https://doi.org/10.5194/bg-16-1829-2019, 2019
Short summary
Short summary
Measurements of surface fluxes are taken around the world and are extremely valuable for understanding how the land and atmopshere interact, and how the land can amplify temerature extremes. However, do these measurements sample extreme temperatures, or are they biased to the average? We examine this question and highlight data that do measure surface fluxes under extreme conditions. This provides a way forward to help model developers improve their models.
Friederike Gerschlauer, Gustavo Saiz, David Schellenberger Costa, Michael Kleyer, Michael Dannenmann, and Ralf Kiese
Biogeosciences, 16, 409–424, https://doi.org/10.5194/bg-16-409-2019, https://doi.org/10.5194/bg-16-409-2019, 2019
Short summary
Short summary
Mount Kilimanjaro is an iconic environmental asset under serious threat due to increasing human pressures and climate change constraints. We studied variations in the stable isotopic composition of carbon and nitrogen in plant, litter, and soil material sampled along a strong land-use and altitudinal gradient. Our results show that, besides management, increasing temperatures in a changing climate may promote carbon and nitrogen losses, thus altering the stability of Kilimanjaro ecosystems.
Boaz Hilman, Jan Muhr, Susan E. Trumbore, Norbert Kunert, Mariah S. Carbone, Päivi Yuval, S. Joseph Wright, Gerardo Moreno, Oscar Pérez-Priego, Mirco Migliavacca, Arnaud Carrara, José M. Grünzweig, Yagil Osem, Tal Weiner, and Alon Angert
Biogeosciences, 16, 177–191, https://doi.org/10.5194/bg-16-177-2019, https://doi.org/10.5194/bg-16-177-2019, 2019
Short summary
Short summary
Combined measurement of CO2 / O2 fluxes in tree stems suggested that on average 41 % of the respired CO2 was not emitted locally to the atmosphere. This finding strengthens the recognition that CO2 efflux from tree stems is not an accurate measure of respiration. The CO2 / O2 fluxes did not vary as expected if CO2 dissolution in the xylem sap was the main driver for the CO2 retention. We suggest the examination of refixation of respired CO2 as a possible mechanism for CO2 retention.
Gitta Lasslop, Thomas Moeller, Donatella D'Onofrio, Stijn Hantson, and Silvia Kloster
Biogeosciences, 15, 5969–5989, https://doi.org/10.5194/bg-15-5969-2018, https://doi.org/10.5194/bg-15-5969-2018, 2018
Short summary
Short summary
We apply a multivariate model evaluation to the relationship between climate, vegetation and fire in the tropics using the JSBACH land surface model and two remote-sensing data sets, with the aim to identify the potential for model improvement. The overestimation of tree cover for low precipitation and a very strong relationship between tree cover and burned area indicates opportunities in the improvement of drought effects and the impact of fire on tree cover or the adaptation of trees to fire.
Yao Zhang, Joanna Joiner, Seyed Hamed Alemohammad, Sha Zhou, and Pierre Gentine
Biogeosciences, 15, 5779–5800, https://doi.org/10.5194/bg-15-5779-2018, https://doi.org/10.5194/bg-15-5779-2018, 2018
Short summary
Short summary
Using satellite reflectance measurements and a machine learning algorithm, we generated a new solar-induced chlorophyll fluorescence (SIF) dataset that is closely linked to plant photosynthesis. This new dataset has higher spatial and temporal resolutions, and lower uncertainty compared to the existing satellite retrievals. We also demonstrated its application in monitoring drought and improving the understanding of the SIF–photosynthesis relationship.
Chris Huntingford, Rebecca J. Oliver, Lina M. Mercado, and Stephen Sitch
Biogeosciences, 15, 5415–5422, https://doi.org/10.5194/bg-15-5415-2018, https://doi.org/10.5194/bg-15-5415-2018, 2018
Short summary
Short summary
Raised ozone levels impact plant stomatal opening and thus photosynthesis. Most models describe this as a suppression of stomata opening. Field evidence suggests more complexity, as ozone damage may make stomatal response
sluggish. In some circumstances, this causes stomata to be more open – a concern during drought conditions – by increasing transpiration. To guide interpretation and modelling of field measurements, we present an equation for sluggish effects, via a single tau parameter.
Jacob A. Nelson, Nuno Carvalhais, Mirco Migliavacca, Markus Reichstein, and Martin Jung
Biogeosciences, 15, 2433–2447, https://doi.org/10.5194/bg-15-2433-2018, https://doi.org/10.5194/bg-15-2433-2018, 2018
Short summary
Short summary
Plants have typical daily carbon uptake and water loss cycles. However, these cycles may change under periods of duress, such as water limitation. Here we identify two types of patterns in response to water limitations: a tendency to lose more water in the morning than afternoon and a decoupling of the carbon and water cycles. The findings show differences in responses by trees and grasses and suggest that morning shifts may be more efficient at gaining carbon per unit water used.
Wenqiang Zhao, Peter B. Reich, Qiannan Yu, Ning Zhao, Chunying Yin, Chunzhang Zhao, Dandan Li, Jun Hu, Ting Li, Huajun Yin, and Qing Liu
Biogeosciences, 15, 2033–2053, https://doi.org/10.5194/bg-15-2033-2018, https://doi.org/10.5194/bg-15-2033-2018, 2018
Short summary
Short summary
We found larger shrub leaf C, C : N and lower leaf N, N : P levels compared to other terrestrial ecosystems. Alpine shrubs exhibited the greatest leaf C at low temperatures, whereas the largest leaf N and P occurred in valley deciduous shrubs. The large heterogeneity in nutrient uptake and physiological adaptation of shrub types to environments explained the largest fraction of leaf C : N : P variations, while climate indirectly affected leaf C : N : P via its interactive effects on shrub type or soil.
Peter Levy, Marcel van Oijen, Gwen Buys, and Sam Tomlinson
Biogeosciences, 15, 1497–1513, https://doi.org/10.5194/bg-15-1497-2018, https://doi.org/10.5194/bg-15-1497-2018, 2018
Short summary
Short summary
We present a new method for estimating land-use change using a Bayesian data assimilation approach. This allows us to constrain estimates of gross land-use change with reliable national-scale census data whilst retaining the information available from several other sources. This includes detailed spatial data; further data sources, such as new satellites, could easily be added in future. Uncertainty is propagated appropriately into the output.
Cited articles
Adachi, M., Bekku, Y. S., Konuma, A., Kadir, W. R., Okuda, T., and Koizumi,
H.: Required sample size for estimating soil respiration rates in large
areas of two tropical forests and of two types of plantation in Malaysia,
Forest Ecol. Manag., 210, 455–459, 2005.
Aguilos, M., Takagi, K., Liang, N., Watanabe, Y., Goto, S., Takahashi, Y., Mukai, H., and Sasa, K.: Soil warming in a cool-temperate mixed forest with peat soil enhanced heterotrophic and basal respiration rates but Q10 remained unchanged, Biogeosciences Discuss., 8, 6415–6445, https://doi.org/10.5194/bgd-8-6415-2011, 2011.
Atkins, J. W., Bohrer, G., Fahey, R. T., Hardiman, B. S., Morin, T. H.,
Stovall, A. E. L., Zimmerman, N., and Gough, C. M.: Quantifying vegetation
and canopy structural complexity from terrestrial LiDAR data using the
forestr r package, edited by S. Goslee, Methods Ecol. Evol., 9,
2057–2066, 2018.
Barba, J., Cueva, A., Bahn, M., Barron-Gafford, G. A., Bond-Lamberty, B.,
Hanson, P. J., Jaimes, A., Kulmala, L., Pumpanen, J., Scott, R. L.,
Wohlfahrt, G., and Vargas, R.: Comparing ecosystem and soil respiration:
Review and key challenges of tower-based and soil measurements, Agr. Forest
Meteorol., 249, 434–443, 2018.
Bates, D., Mächler, M., Bolker, B., and Walker, S.: Fitting Linear
Mixed-Effects Models Using lme4, J. Stat. Softw.,
67, 1–48, 2015.
Bond-Lamberty, B.: New techniques and data for understanding the global soil
respiration flux, Earth's Future, 6, 1176–1180, https://doi.org/10.1029/2018EF000866, 2018.
Bond-Lamberty, B. and Thomson, A.: A global database of soil respiration data, Biogeosciences, 7, 1915–1926, https://doi.org/10.5194/bg-7-1915-2010, 2010.
Bond-Lamberty, B., Epron, D., Harden, J. W., Harmon, M. E., Hoffman, F. M.,
Kumar, J., McGuire, A. D., and Vargas, R.: Estimating heterotrophic
respiration at large scales: challenges, approaches, and next steps,
Ecosphere, 7, d01380, https://doi.org/10.1002/ecs2.1380, 2016.
Boone, R. D., Nadelhoffer, K. J., Canary, J. D., and Kaye, J. P.: Roots exert
a strong influence on the temperature sensitivity of soil respiration,
Nature, 396, 570–572, 1998.
Brændholt, A., Ibrom, A., Larsen, K. S., and Pilegaard, K.: Partitioning
of ecosystem respiration in a beech forest, Agr. Forest Meteorol., 252,
88–98, 2018.
Bréchet, L., Ponton, S., Alméras, T., Bonal, D., and Epron, D.: Does
spatial distribution of tree size account for spatial variation in soil
respiration in a tropical forest?, Plant Soil, 347, 293, https://doi.org/10.1007/s11104-011-0848-1, 2011.
Burgess, S. S. O., Adams, M. A., Turner, N. C., and Ong, C. K.: The
redistribution of soil water by tree root systems, Oecologia, 115,
306–311, 1998.
Cable, J. M., Ogle, K., Lucas, R. W., Huxman, T. E., Loik, M. E., Smith, S.
D., Tissue, D. T., Ewers, B. E., Pendall, E. G., Welker, J. M., Charlet, T.
N., Cleary, M., Griffith, A., Nowak, R. S., Rogers, M., Steltzer, H.,
Sullivan, P. F., and van Gestel, N. C.: The temperature responses of soil
respiration in deserts: a seven desert synthesis, Biogeochemistry, 103,
71–90, 2010.
Curiel Yuste, J., Janssens, I. A., Carrara, A., and Ceulemans, R.: Annual Q10
of soil respiration reflects plant phenological patterns as well as
temperature sensitivity, Glob. Change Biol., 10, 161–169, 2004.
Davidson, E. A., Verchot, L. V., Cattânio, J. H., Ackerman, I. L., and
Carvalho, J. E. M.: Effects of soil water content on soil respiration in
forests and cattle pastures of eastern Amazonia, Biogeochemistry, 48,
53–69, 2000.
Davidson, E. A., Savage, K. E., Verchot, L. V., and Navarro, R.: Minimizing
artifacts and biases in chamber-based measurements of soil respiration,
Agr. Forest Meteorol., 113, 21–37, 2002.
Ekblad, A. and Högberg, P.: Natural abundance of 13C in CO2 respired
from forest soils reveals speed of link between tree photosynthesis and root
respiration, Oecologia, 127, 305–308, 2001.
Epron, D., Le Dantec, V., Dufrene, E., and Granier, A.: Seasonal dynamics of
soil carbon dioxide efflux and simulated rhizosphere respiration in a beech
forest, Tree Physiol., 21, 145–152, 2001.
Epron, D., Nouvellon, Y., Roupsard, O., Mouvondy, W., Mabiala, A.,
Saint-André, L., Joffre, R., Jourdan, C., Bonnefond, J.-M., Berbigier,
P., and Hamel, O.: Spatial and temporal variations of soil respiration in a
Eucalyptus plantation in Congo, Forest Ecol. Manag., 202, 149–160, 2004.
Ezer, T. and Corlett, W. B.: Is sea level rise accelerating in the
Chesapeake Bay? A demonstration of a novel new approach for analyzing sea
level data, Geophys. Res. Lett., 39, L19605, https://doi.org/10.1029/2012GL053435, 2012.
Fang, C., Moncrieff, J. B., Gholz, H. L., and Clark, K. L.: Soil CO2 efflux and its spatial variation in a
Florida slash pine plantation, Plant Soil, 205, 135–146,
https://doi.org/10.1023/A:1004304309827, 1998.
Giasson, M.-A., Ellison, A. M., Bowden, R. D., Crill, P. M., Davidson, E.
A., Drake, J. E., Frey, S. D., Hadley, J. L., Lavine, M., Melillo, J. M.,
Munger, J. W., Nadelhoffer, K. J., Nicoll, L., Ollinger, S. V., Savage, K.
E., Steudler, P. A., Tang, J., Varner, R. K., Wofsy, S. C., Foster, D. R.,
and Finzi, A. C.: Soil respiration in a northeastern US temperate forest: a
22-year synthesis, Ecosphere, 4, 140, https://doi.org/10.1890/ES13.00183.1, 2013.
Gillman, L. N., Wright, S. D., Cusens, J., McBride, P. D., Malhi, Y., and
Whittaker, R. J.: Latitude, productivity and species richness: Latitude and
productivity, Global Ecol. Biogeogr., 24, 107–117, 2015.
Granier, A., Biron, P., and Lemoine, D.: Water balance, transpiration and
canopy conductance in two beech stands, Agr. Forest Meteorol., 100,
291–308, 2000.
Hanson, P. J., Edwards, N. T., Garten, C. T., and Andrews, J. A.: Separating
root and soil microbial contributions to soil respiration: A review of
methods and observations, Biogeochemistry, 48, 115–146, 2000.
Högberg, P., Nordgren, A., Buchmann, N., Taylor, A. F. S., Ekblad, A.,
Högberg, M. N., Nyberg, G., Ottosson-Löfvenius, M., and Read, D. J.:
Large-scale forest girdling shows that current photosynthesis drives soil
respiration, Nature, 411, 789–792, 2001.
Hopkins, F. M., Gonzalez-Meler, M. A., Flower, C. E., Lynch, D. J.,
Czimczik, C. I., Tang, J., and Subke, J.-A.: Ecosystem-level controls on
root-rhizosphere respiration, New Phytol., 199, 339–351, 2013.
Hursh, A., Ballantyne, A., Cooper, L., Maneta, M., Kimball, J., and Watts,
J.: The sensitivity of soil respiration to soil temperature, moisture, and
carbon supply at the global scale, Glob. Change Biol., 23, 2090–2103,
2017.
Lindeman, R. H., Merenda, P. F., and Gold, R. Z.: Introduction to bivariate
and multivariate analysis, Foresman and company, Glenview, IL, Scott, 1980.
Luo, Y. and Zhou, X.: Soil Respiration and the Environment,
Elsevier/Academic Press, Amsterdam, 2006.
Luyssaert, S., Inglima, I., Jung, M., Richardson, A. D., Reichstein, M.,
Papale, D., Piao, S., Schulze, E.-D., Wingate, L., Matteucci, G.,
Aragão, L. E. O. C., Aubinet, M., Beer, C., Bernhofer, C., Black, K. G.,
Bonal, D., Bonnefond, J.-M., Chambers, J. L., Ciais, P., Cook, B. D., Davis,
K. J., Dolman, A. J., Gielen, B., Goulden, M. L., Grace, J., Granier, A.,
Grelle, A., Griffis, T. J., Grünwald, T., Guidolotti, G., Hanson, P. J.,
Harding, R. B., Hollinger, D. Y., Hutyra, L. R., Kolari, P., Kruijt, B.,
Kutsch, W. L., Lagergren, F., Laurila, T., Law, B. E., Le Maire, G.,
Lindroth, A., Loustau, D., Malhi, Y., Mateus, J., Migliavacca, M., Misson,
L., Montagnani, L., Moncrieff, J. B., Moors, E. J., Munger, J. W., Nikinmaa,
E., Ollinger, S. V., Pita, G., Rebmann, C., Roupsard, O., Saigusa, N., Sanz,
M. J., Seufert, G., Sierra, C. A., Smith, M.-L., Tang, J., Valentini, R.,
Vesala, T., and Janssens, I. A.: CO2 balance of boreal, temperate, and
tropical forests derived from a global database, Glob. Change Biol., 13,
2509–2537, 2007.
Misson, L., Gershenson, A., Tang, J., McKay, M., Cheng, W., and Goldstein, A.
H.: Influences of canopy photosynthesis and summer rain pulses on root
dynamics and soil respiration in a young ponderosa pine forest, Tree
Physiol., 26, 833–844, 2006.
National Weather Service: Record Rain and Flooding of 2018, available at: https://www.weather.gov/lwx/2018floods, last access: 30 May
2019.
Pennington, S. C. and Bond-Lamberty, B.: Code and Data Supporting Manuscript, Zenodo, https://doi.org/10.5281/zenodo.3613839, 2020.
Pitz, S. and Megonigal, J. P.: Temperate forest methane sink diminished by
tree emissions, New Phytol., 214, 1432–1439, 2017.
Raich, J. W. and Schlesinger, W. H.: The global carbon dioxide flux in soil
respiration and its relationship to vegetation and climate, Tellus B, 44, 81–99, 1992.
Raich, J. W., Potter, C. S., and Bhagawati, D.: Interannual variability in
global soil respiration, 1980–94, Glob. Change Biol., 8, 800–812, 2002.
R Development Core Team: R: A language and environment for statistical
computing. Version 3.5.3, available at:
http://www.R-project.org/ (last access: 10 January 2020), 2019.
Reichstein, M., Rey, A., Freibauer, A., Tenhunen, J. D., Valentini, R.,
Banza, J., Casals, P., Cheng, Y., Grünzweig, J. M., Irvine, J., Joffre,
R., Law, B. E., Loustau, D., Miglietta, F., Oechel, W. C., Ourcival, J.-M.,
Pereira, J., Peressotti, A., Ponti, F., Qi, Y., Rambal, S., Rayment, M. B.,
Romanya, J., Rossi, F., Tedeschi, V., Tirone, G., Xu, M., and Yakir, D.:
Modeling temporal and large-scale spatial variability of soil respiration
from soil water availability, temperature and vegetation productivity
indices, Global Biochem. Cy., 17, 1104, https://doi.org/10.1029/2003GB002035, 2003.
Riveros-Iregui, D. A., Mcglynn, B. L., Emanuel, R. E., and Epstein, H. E.:
Complex Terrain Leads to Bidirectional Responses of Soil Respiration to Inter-Annual Water
Availability, Glob. Change Biol., 18, 749–756,
https://doi.org/10.1111/j.1365-2486.2011.02556.x, 2011.
Rodeghiero, M. and Cescatti, A.: Spatial variability and optimal sampling
strategy of soil respiration, Forest Ecol. Manag., 255, 106–112, 2008.
Rogers, K., Kelleway, J. J., Saintilan, N., Megonigal, J. P., Adams, J. B.,
Holmquist, J. R., Lu, M., Schile-Beers, L., Zawadzki, A., Mazumder, D., and
Woodroffe, C. D.: Wetland carbon storage controlled by millennial-scale
variation in relative sea-level rise, Nature, 567, 91–95, 2019.
Ruehr, N. K., Knohl, A., and Buchmann, N.: Environmental variables
controlling soil respiration on diurnal, seasonal and annual time-scales in
a mixed mountain forest in Switzerland, Biogeochemistry, 98, 153–170,
2010.
Saiz, G., Green, C., Butterbach-Bahl, K., Kiese, R., Avitabile, V., and
Farrell, E. P.: Seasonal and spatial variability of soil respiration in four
Sitka spruce stands, Plant Soil, 287, 161–176, 2006.
Sallenger, A., Doran, K., and Howd, P.: Hotspot of accelerated sea-level rise on the Atlantic
coast of North America, Nat. Clim. Change, 2, 884–888, 2012.
Schlesinger, W. H. and Andrews, J. A.: Soil respiration and the global
carbon cycle, Biogeochemistry, 48, 7–20, 2000.
Schwendenmann, L. and Macinnis-Ng, C.: Soil CO2 efflux in an old-growth southern conifer forest (Agathis australis) – magnitude, components and controls, SOIL, 2, 403–419, https://doi.org/10.5194/soil-2-403-2016, 2016.
Sierra, C. A., Trumbore, S. E., Davidson, E. A., Vicca, S., and Janssens, I.
A.: Sensitivity of decomposition rates of soil organic matter with respect
to simultaneous changes in temperature and moisture, J. Adv.
Model. Earth Sy., 7, 335–356, 2015.
Søe, A. R. B. and Buchmann, N.: Spatial and temporal variations in soil
respiration in relation to stand structure and soil parameters in an
unmanaged beech forest, Tree Physiol., 25, 1427–1436, 2005.
Sprugel, D. G., Ryan, M. G., Brooks, J. R., Vogt, K. A., and Martin, T. A.:
Respiration from the organ level to the stand, in: Resource Physiology of
Conifers, edited by: Smith, W. K. and Hinckley, T. M., 255–299, Academic
Press, San Diego, 1995.
Stegen, J. C., Anderson, C. G., Bond-Lamberty, B., Crump, A. R., Chen, X., and Hess, N.: Soil respiration across a permafrost transition zone: spatial structure and environmental correlates, Biogeosciences, 14, 4341–4354, https://doi.org/10.5194/bg-14-4341-2017, 2017.
Stone, E. L. and Kalisz, P. J.: On the maximum extent of tree roots, Forest
Ecol. Manag., 46, 59–102, 1991.
Subke, J.-A., Inglima, I., and Cotrufo, M. F.: Trends and methodological
impacts in soil CO2 efflux partitioning: A metaanalytical review, Glob.
Change Biol., 12, 921–943, 2006.
Suseela, V., Conant, R. T., Wallenstein, M. D., and Dukes, J. S.: Effects of
soil moisture on the temperature sensitivity of heterotrophic respiration
vary seasonally in an old-field climate change experiment, Glob. Change
Biol., 18, 336–348, 2012.
Tang, J. and Baldocchi, D. D.: Spatial-temporal variation in soil
respiration in an oak-grass savanna ecosystem in California and its
partitioning into autotrophic and heterotrophic components, Biogeochemistry,
73, 183–207, 2005.
Vose, J. M. and Ryan, M. G.: Seasonal respiration of foliage, fine roots,
and woody tissues in relation to growth, tissue N, and photosynthesis, Glob.
Change Biol., 8, 182–193, 2002.
Wei, W., Weile, C., and Shaopeng, W.: Forest soil respiration and its
heterotrophic and autotrophic components: Global patterns and responses to
temperature and precipitation, Soil Biol. Biochem., 42, 1236–1244, 2010.
Short summary
Soil respiration (Rs) is the flow of CO2 from the soil surface to the atmosphere and is one of the largest carbon fluxes on land. This study examined the effect of local basal area (tree area) on Rs in a coastal forest in eastern Maryland, USA. Rs measurements were taken as well as distance from soil collar, diameter, and species of each tree within a 15 m radius. We found that trees within 5 m of our sampling points had a positive effect on how sensitive soil respiration was to temperature.
Soil respiration (Rs) is the flow of CO2 from the soil surface to the atmosphere and is one of...
Altmetrics
Final-revised paper
Preprint