Articles | Volume 12, issue 19
https://doi.org/10.5194/bg-12-5735-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-12-5735-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Evaluation of stem rot in 339 Bornean tree species: implications of size, taxonomy, and soil-related variation for aboveground biomass estimates
K. D. Heineman
CORRESPONDING AUTHOR
Program for Ecology, Evolution, and Conservation Biology, University of Illinois-Urbana Champaign, USA
S. E. Russo
School of Biological Sciences, University of Nebraska–Lincoln, Nebraska, USA
I. C. Baillie
National Soil Resources Institute, Cranfield University, UK
Forest Department, Kuching, Sarawak, Malaysia
J. D. Mamit
Forest Department, Kuching, Sarawak, Malaysia
Datuk Menteri Yang Berhormat, Federal Parliament of Malaysia, Kuala Lumpur, Malaysia
P. P.-K. Chai
Forest Department, Kuching, Sarawak, Malaysia
L. Chai
Forest Department, Kuching, Sarawak, Malaysia
E. W. Hindley
02 591 57 W Avenue, Vancouver, British Columbia, Canada
B.-T. Lau
Forest Department, Kuching, Sarawak, Malaysia
S. Tan
Center for Tropical Forest Science, Smithsonian Institution, Washington DC, USA
P. S. Ashton
Organismic and Evolutionary Biology, Harvard University, USA and Royal Botanic Gardens, Kew, UK
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Cecilia M. Prada, Katherine D. Heineman, Maria J. Pardo, Camille Piponiot, and James W. Dalling
EGUsphere, https://doi.org/10.5194/egusphere-2024-2738, https://doi.org/10.5194/egusphere-2024-2738, 2024
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The influence of elevation and soil nutrient availability on carbon stocks has not been evaluated for ectomycorrhizal forests in the tropics. In western Panama we calculated C pools in ten plots in an elevational gradient varying in relative abundance of EM-trees. We found exceptionally high aboveground soil C in high elevation EM-forest, in contrast to arbuscular mycorrhizal-dominated Andean forests.
Related subject area
Biodiversity and Ecosystem Function: Terrestrial
Crowd-sourced trait data can be used to delimit global biomes
Biomass yield potential, feedstock quality, and nutrient removal of perennial buffer strips under continuous zero fertilizer application
Leaf habit drives leaf nutrient resorption globally alongside nutrient availability and climate
Linking geomorphological processes and wildlife microhabitat selection: nesting birds select refuges generated by permafrost degradation in the Arctic
Distinguishing mature and immature trees allows estimating forest carbon uptake from stand structure
Enhancing environmental models with a new downscaling method for global radiation in complex terrain
“Blooming” of litter-mixing effects: the role of flower and leaf litter interactions on decomposition in terrestrial and aquatic ecosystems
From simple labels to semantic image segmentation: leveraging citizen science plant photographs for tree species mapping in drone imagery
Plant functional traits modulate the effects of soil acidification on above- and belowground biomass
Regional effects and local climate jointly shape the global distribution of sexual systems in woody flowering plants
Ideas and perspectives: Sensing energy and matter fluxes in a biota-dominated Patagonian landscape through environmental seismology – introducing the Pumalín Critical Zone Observatory
Comparison of carbon and water fluxes and the drivers of ecosystem water use efficiency in a temperate rainforest and a peatland in southern South America
Kilometre-scale simulations over Fennoscandia reveal a large loss of tundra due to climate warming
Microclimate mapping using novel radiative transfer modelling
On the predictability of turbulent fluxes from land: PLUMBER2 MIP experimental description and preliminary results
Root distributions predict shrub–steppe responses to precipitation intensity
Thermophilisation of Afromontane forest stands demonstrated in an elevation gradient experiment
Soil smoldering in temperate forests: A neglected contributor to fire carbon emissions revealed by atmospheric mixing ratios
Above-treeline ecosystems facing drought: lessons from the 2022 European summer heat wave
Canopy gaps and associated losses of biomass – combining UAV imagery and field data in a central Amazon forest
Ideas and perspectives: Beyond model evaluation – combining experiments and models to advance terrestrial ecosystem science
Primary succession and its driving variables – a sphere-spanning approach applied in proglacial areas in the upper Martell Valley (Eastern Italian Alps)
Contemporary biodiversity pattern is affected by climate change at multiple temporal scales in steppes on the Mongolian Plateau
Quantifying vegetation indices using terrestrial laser scanning: methodological complexities and ecological insights from a Mediterranean forest
Revisiting and attributing the global controls over terrestrial ecosystem functions of climate and plant traits at FLUXNET sites via causal graphical models
Dynamics of short-term ecosystem carbon fluxes induced by precipitation events in a semiarid grassland
Throughfall exclusion and fertilization effects on tropical dry forest tree plantations, a large-scale experiment
Tectonic controls on the ecosystem of the Mara River basin, East Africa, from geomorphological and spectral index analysis
Spruce bark beetles (Ips typographus) cause up to 700 times higher bark BVOC emission rates compared to healthy Norway spruce (Picea abies)
Technical note: Novel estimates of the leaf relative uptake rate of carbonyl sulfide from optimality theory
Observed water and light limitation across global ecosystems
A question of scale: modeling biomass, gain and mortality distributions of a tropical forest
Seed traits and phylogeny explain plants' geographic distribution
Effect of the presence of plateau pikas on the ecosystem services of alpine meadows
Allometric equations and wood density parameters for estimating aboveground and woody debris biomass in Cajander larch (Larix cajanderi) forests of northeast Siberia
Strong influence of trees outside forest in regulating microclimate of intensively modified Afromontane landscapes
Excess radiation exacerbates drought stress impacts on canopy conductance along aridity gradients
Dispersal of bacteria and stimulation of permafrost decomposition by Collembola
Modeling the effects of alternative crop–livestock management scenarios on important ecosystem services for smallholder farming from a landscape perspective
Contrasting strategies of nutrient demand and use between savanna and forest ecosystems in a neotropical transition zone
Monitoring post-fire recovery of various vegetation biomes using multi-wavelength satellite remote sensing
Updated estimation of forest biomass carbon pools in China, 1977–2018
Estimating dry biomass and plant nitrogen concentration in pre-Alpine grasslands with low-cost UAS-borne multispectral data – a comparison of sensors, algorithms, and predictor sets
Fire in lichen-rich subarctic tundra changes carbon and nitrogen cycling between ecosystem compartments but has minor effects on stocks
Mass concentration measurements of autumn bioaerosol using low-cost sensors in a mature temperate woodland free-air carbon dioxide enrichment (FACE) experiment: investigating the role of meteorology and carbon dioxide levels
Phosphorus stress strongly reduced plant physiological activity, but only temporarily, in a mesocosm experiment with Zea mays colonized by arbuscular mycorrhizal fungi
Main drivers of plant diversity patterns of rubber plantations in the Greater Mekong Subregion
Importance of the forest state in estimating biomass losses from tropical forests: combining dynamic forest models and remote sensing
Examining the role of environmental memory in the predictability of carbon and water fluxes across Australian ecosystems
Water uptake patterns of pea and barley responded to drought but not to cropping systems
Simon Scheiter, Sophie Wolf, and Teja Kattenborn
Biogeosciences, 21, 4909–4926, https://doi.org/10.5194/bg-21-4909-2024, https://doi.org/10.5194/bg-21-4909-2024, 2024
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Biomes are widely used to map vegetation patterns at large spatial scales and to assess impacts of climate change, yet there is no consensus on a generally valid biome classification scheme. We used crowd-sourced species distribution data and trait data to assess whether trait information is suitable for delimiting biomes. Although the trait data were heterogeneous and had large gaps with respect to the spatial distribution, we found that a global trait-based biome classification was possible.
Cheng-Hsien Lin, Colleen Zumpf, Chunhwa Jang, Thomas Voigt, Guanglong Tian, Olawale Oladeji, Albert Cox, Rehnuma Mehzabin, and DoKyoung Lee
Biogeosciences, 21, 4765–4784, https://doi.org/10.5194/bg-21-4765-2024, https://doi.org/10.5194/bg-21-4765-2024, 2024
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Riparian areas are subject to environmental issues (nutrient leaching) associated with low productivity. Perennial grasses can improve ecosystem services from riparian zones while producing forage/bioenergy feedstock biomass as potential income for farmers. The forage-type buffer can be an ideal short-term candidate due to its great efficiency of nutrient scavenging; the bioenergy-type buffer showed better sustainability than the forage buffer and a continuous yield supply potential.
Gabriela Sophia, Silvia Caldararu, Benjamin David Stocker, and Sönke Zaehle
Biogeosciences, 21, 4169–4193, https://doi.org/10.5194/bg-21-4169-2024, https://doi.org/10.5194/bg-21-4169-2024, 2024
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Through an extensive global dataset of leaf nutrient resorption and a multifactorial analysis, we show that the majority of spatial variation in nutrient resorption may be driven by leaf habit and type, with thicker, longer-lived leaves having lower resorption efficiencies. Climate, soil fertility and soil-related factors emerge as strong drivers with an additional effect on its role. These results are essential for comprehending plant nutrient status, plant productivity and nutrient cycling.
Madeleine-Zoé Corbeil-Robitaille, Éliane Duchesne, Daniel Fortier, Christophe Kinnard, and Joël Bêty
Biogeosciences, 21, 3401–3423, https://doi.org/10.5194/bg-21-3401-2024, https://doi.org/10.5194/bg-21-3401-2024, 2024
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In the Arctic tundra, climate change is transforming the landscape, and this may impact wildlife. We focus on three nesting bird species and the islets they select as refuges from their main predator, the Arctic fox. A geomorphological process, ice-wedge polygon degradation, was found to play a key role in creating these refuges. This process is likely to affect predator–prey dynamics in the Arctic tundra, highlighting the connections between nature's physical and ecological systems.
Samuel M. Fischer, Xugao Wang, and Andreas Huth
Biogeosciences, 21, 3305–3319, https://doi.org/10.5194/bg-21-3305-2024, https://doi.org/10.5194/bg-21-3305-2024, 2024
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Understanding the drivers of forest productivity is key for accurately assessing forests’ role in the global carbon cycle. Yet, despite significant research effort, it is not fully understood how the productivity of a forest can be deduced from its stand structure. We suggest tackling this problem by identifying the share and structure of immature trees within forests and show that this approach could significantly improve estimates of forests’ net productivity and carbon uptake.
Arsène Druel, Julien Ruffault, Hendrik Davi, André Chanzy, Olivier Marloie, Miquel De Cáceres, Florent Mouillot, Christophe François, Kamel Soudani, and Nicolas K. Martin-StPaul
EGUsphere, https://doi.org/10.5194/egusphere-2024-1800, https://doi.org/10.5194/egusphere-2024-1800, 2024
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Accurate radiation data are essential for understanding ecosystem growth. Traditional large-scale data lack the precision needed for complex terrains, e.g. mountainous regions. This study introduces a new model to enhance radiation data resolution using elevation maps, which accounts for sub-daily direct and diffuse radiation effects caused by terrain features. Tested on Mont Ventoux, this method significantly improves radiation estimates, benefiting forest growth and climate risk models.
Mery Ingrid Guimarães de Alencar, Rafael D. Guariento, Bertrand Guenet, Luciana S. Carneiro, Eduardo L. Voigt, and Adriano Caliman
Biogeosciences, 21, 3165–3182, https://doi.org/10.5194/bg-21-3165-2024, https://doi.org/10.5194/bg-21-3165-2024, 2024
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Flowers are ephemeral organs for reproduction, and their litter is functionally different from leaf litter. Flowers can affect decomposition and interact with leaf litter, influencing decomposition non-additively. We show that mixing flower and leaf litter from the Tabebuia aurea tree creates reciprocal synergistic effects on decomposition in both terrestrial and aquatic environments. We highlight that flower litter input can generate biogeochemical hotspots in terrestrial ecosystems.
Salim Soltani, Olga Ferlian, Nico Eisenhauer, Hannes Feilhauer, and Teja Kattenborn
Biogeosciences, 21, 2909–2935, https://doi.org/10.5194/bg-21-2909-2024, https://doi.org/10.5194/bg-21-2909-2024, 2024
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In this research, we developed a novel method using citizen science data as alternative training data for computer vision models to map plant species in unoccupied aerial vehicle (UAV) images. We use citizen science plant photographs to train models and apply them to UAV images. We tested our approach on UAV images of a test site with 10 different tree species, yielding accurate results. This research shows the potential of citizen science data to advance our ability to monitor plant species.
Xue Feng, Ruzhen Wang, Tianpeng Li, Jiangping Cai, Heyong Liu, Hui Li, and Yong Jiang
Biogeosciences, 21, 2641–2653, https://doi.org/10.5194/bg-21-2641-2024, https://doi.org/10.5194/bg-21-2641-2024, 2024
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Plant functional traits have been considered as reflecting adaptations to environmental variations, indirectly affecting ecosystem productivity. How soil acidification affects above- and belowground biomass by altering leaf and root traits remains poorly understood. We found divergent trait responses driven by soil environmental conditions in two dominant species, resulting in a decrease in aboveground biomass and an increase in belowground biomass.
Minhua Zhang, Xiaoqing Hu, and Fangliang He
Biogeosciences, 21, 2133–2142, https://doi.org/10.5194/bg-21-2133-2024, https://doi.org/10.5194/bg-21-2133-2024, 2024
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Plant sexual systems are important to understanding the evolution and maintenance of plant diversity. We quantified region effects on their proportions while incorporating local climate factors and evolutionary history. We found regional processes and climate effects both play important roles in shaping the geographic distribution of sexual systems, providing a baseline for predicting future changes in forest communities in the context of global change.
Christian H. Mohr, Michael Dietze, Violeta Tolorza, Erwin Gonzalez, Benjamin Sotomayor, Andres Iroume, Sten Gilfert, and Frieder Tautz
Biogeosciences, 21, 1583–1599, https://doi.org/10.5194/bg-21-1583-2024, https://doi.org/10.5194/bg-21-1583-2024, 2024
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Coastal temperate rainforests, among Earth’s carbon richest biomes, are systematically underrepresented in the global network of critical zone observatories (CZOs). Introducing here a first CZO in the heart of the Patagonian rainforest, Chile, we investigate carbon sink functioning, biota-driven landscape evolution, fluxes of matter and energy, and disturbance regimes. We invite the community to join us in cross-disciplinary collaboration to advance science in this particular environment.
Jorge F. Perez-Quezada, David Trejo, Javier Lopatin, David Aguilera, Bruce Osborne, Mauricio Galleguillos, Luca Zattera, Juan L. Celis-Diez, and Juan J. Armesto
Biogeosciences, 21, 1371–1389, https://doi.org/10.5194/bg-21-1371-2024, https://doi.org/10.5194/bg-21-1371-2024, 2024
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For 8 years we sampled a temperate rainforest and a peatland in Chile to estimate their efficiency to capture carbon per unit of water lost. The efficiency is more related to the water lost than to the carbon captured and is mainly driven by evaporation instead of transpiration. This is the first report from southern South America and highlights that ecosystems might behave differently in this area, likely explained by the high annual precipitation (~ 2100 mm) and light-limited conditions.
Fredrik Lagergren, Robert G. Björk, Camilla Andersson, Danijel Belušić, Mats P. Björkman, Erik Kjellström, Petter Lind, David Lindstedt, Tinja Olenius, Håkan Pleijel, Gunhild Rosqvist, and Paul A. Miller
Biogeosciences, 21, 1093–1116, https://doi.org/10.5194/bg-21-1093-2024, https://doi.org/10.5194/bg-21-1093-2024, 2024
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The Fennoscandian boreal and mountain regions harbour a wide range of ecosystems sensitive to climate change. A new, highly resolved high-emission climate scenario enabled modelling of the vegetation development in this region at high resolution for the 21st century. The results show dramatic south to north and low- to high-altitude shifts of vegetation zones, especially for the open tundra environments, which will have large implications for nature conservation, reindeer husbandry and forestry.
Florian Zellweger, Eric Sulmoni, Johanna T. Malle, Andri Baltensweiler, Tobias Jonas, Niklaus E. Zimmermann, Christian Ginzler, Dirk Nikolaus Karger, Pieter De Frenne, David Frey, and Clare Webster
Biogeosciences, 21, 605–623, https://doi.org/10.5194/bg-21-605-2024, https://doi.org/10.5194/bg-21-605-2024, 2024
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The microclimatic conditions experienced by organisms living close to the ground are not well represented in currently used climate datasets derived from weather stations. Therefore, we measured and mapped ground microclimate temperatures at 10 m spatial resolution across Switzerland using a novel radiation model. Our results reveal a high variability in microclimates across different habitats and will help to better understand climate and land use impacts on biodiversity and ecosystems.
Gab Abramowitz, Anna Ukkola, Sanaa Hobeichi, Jon Cranko Page, Mathew Lipson, Martin De Kauwe, Sam Green, Claire Brenner, Jonathan Frame, Grey Nearing, Martyn Clark, Martin Best, Peter Anthoni, Gabriele Arduini, Souhail Boussetta, Silvia Caldararu, Kyeungwoo Cho, Matthias Cuntz, David Fairbairn, Craig Ferguson, Hyungjun Kim, Yeonjoo Kim, Jürgen Knauer, David Lawrence, Xiangzhong Luo, Sergey Malyshev, Tomoko Nitta, Jerome Ogee, Keith Oleson, Catherine Ottlé, Phillipe Peylin, Patricia de Rosnay, Heather Rumbold, Bob Su, Nicolas Vuichard, Anthony Walker, Xiaoni Wang-Faivre, Yunfei Wang, and Yijian Zeng
EGUsphere, https://doi.org/10.5194/egusphere-2023-3084, https://doi.org/10.5194/egusphere-2023-3084, 2024
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This paper evaluates land models – computer based models that simulate ecosystem dynamics, the land carbon, water and energy cycles and the role of land in the climate system. It uses machine learning / AI approaches to show that despite the complexity of land models, they do not perform nearly as well as they could, given the amount of information they are provided with about the prediction problem.
Andrew Kulmatiski, Martin C. Holdrege, Cristina Chirvasă, and Karen H. Beard
Biogeosciences, 21, 131–143, https://doi.org/10.5194/bg-21-131-2024, https://doi.org/10.5194/bg-21-131-2024, 2024
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Warmer air and larger precipitation events are changing the way water moves through the soil and into plants. Here we show that detailed descriptions of root distributions can predict plant growth responses to changing precipitation patterns. Shrubs and forbs increased growth, while grasses showed no response to increased precipitation intensity, and these responses were predicted by plant rooting distributions.
Bonaventure Ntirugulirwa, Etienne Zibera, Nkuba Epaphrodite, Aloysie Manishimwe, Donat Nsabimana, Johan Uddling, and Göran Wallin
Biogeosciences, 20, 5125–5149, https://doi.org/10.5194/bg-20-5125-2023, https://doi.org/10.5194/bg-20-5125-2023, 2023
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Twenty tropical tree species native to Africa were planted along an elevation gradient (1100 m, 5.4 °C difference). We found that early-successional (ES) species, especially from lower elevations, grew faster at warmer sites, while several of the late-successional (LS) species, especially from higher elevations, did not respond or grew slower. Moreover, a warmer climate increased tree mortality in LS species, but not much in ES species.
Lilian Vallet, Charbel Abdallah, Thomas Lauvaux, Lilian Joly, Michel Ramonet, Philippe Ciais, Morgan Lopez, Irène Xueref-Remy, and Florent Mouillot
EGUsphere, https://doi.org/10.5194/egusphere-2023-2421, https://doi.org/10.5194/egusphere-2023-2421, 2023
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2022 fire season had a huge impact on European temperate forest, with several large fires exhibiting prolonged soil combustion reported. We analyzed CO and CO2 concentration recorded at nearby atmospheric towers, revealing intense smoldering combustion. We refined a fire emission model to incorporate this process. We estimated 7.95 MteqCO2 fire emission, twice the global estimate. Fires contributed to 1.97 % of the country's annual carbon footprint, reducing forest carbon sink by 30 % this year.
Philippe Choler
Biogeosciences, 20, 4259–4272, https://doi.org/10.5194/bg-20-4259-2023, https://doi.org/10.5194/bg-20-4259-2023, 2023
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The year 2022 was unique in that the summer heat wave and drought led to a widespread reduction in vegetation growth at high elevation in the European Alps. This impact was unprecedented in the southwestern, warm, and dry part of the Alps. Over the last 2 decades, water has become a co-dominant control of vegetation activity in areas that were, so far, primarily controlled by temperature, and the growth of mountain grasslands has become increasingly sensitive to moisture availability.
Adriana Simonetti, Raquel Fernandes Araujo, Carlos Henrique Souza Celes, Flávia Ranara da Silva e Silva, Joaquim dos Santos, Niro Higuchi, Susan Trumbore, and Daniel Magnabosco Marra
Biogeosciences, 20, 3651–3666, https://doi.org/10.5194/bg-20-3651-2023, https://doi.org/10.5194/bg-20-3651-2023, 2023
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We combined 2 years of monthly drone-acquired RGB (red–green–blue) imagery with field surveys in a central Amazon forest. Our results indicate that small gaps associated with branch fall were the most frequent. Biomass losses were partially controlled by gap area, with branch fall and snapping contributing the least and greatest relative values, respectively. Our study highlights the potential of drone images for monitoring canopy dynamics in dense tropical forests.
Silvia Caldararu, Victor Rolo, Benjamin D. Stocker, Teresa E. Gimeno, and Richard Nair
Biogeosciences, 20, 3637–3649, https://doi.org/10.5194/bg-20-3637-2023, https://doi.org/10.5194/bg-20-3637-2023, 2023
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Ecosystem manipulative experiments are large experiments in real ecosystems. They include processes such as species interactions and weather that would be omitted in more controlled settings. They offer a high level of realism but are underused in combination with vegetation models used to predict the response of ecosystems to global change. We propose a workflow using models and ecosystem experiments together, taking advantage of the benefits of both tools for Earth system understanding.
Katharina Ramskogler, Bettina Knoflach, Bernhard Elsner, Brigitta Erschbamer, Florian Haas, Tobias Heckmann, Florentin Hofmeister, Livia Piermattei, Camillo Ressl, Svenja Trautmann, Michael H. Wimmer, Clemens Geitner, Johann Stötter, and Erich Tasser
Biogeosciences, 20, 2919–2939, https://doi.org/10.5194/bg-20-2919-2023, https://doi.org/10.5194/bg-20-2919-2023, 2023
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Primary succession in proglacial areas depends on complex driving forces. To concretise the complex effects and interaction processes, 39 known explanatory variables assigned to seven spheres were analysed via principal component analysis and generalised additive models. Key results show that in addition to time- and elevation-dependent factors, also disturbances alter vegetation development. The results are useful for debates on vegetation development in a warming climate.
Zijing Li, Zhiyong Li, Xuze Tong, Lei Dong, Ying Zheng, Jinghui Zhang, Bailing Miao, Lixin Wang, Liqing Zhao, Lu Wen, Guodong Han, Frank Yonghong Li, and Cunzhu Liang
Biogeosciences, 20, 2869–2882, https://doi.org/10.5194/bg-20-2869-2023, https://doi.org/10.5194/bg-20-2869-2023, 2023
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We used random forest models and structural equation models to assess the relative importance of the present climate and paleoclimate as determinants of diversity and aboveground biomass. Results showed that paleoclimate changes and modern climate jointly determined contemporary biodiversity patterns, while community biomass was mainly affected by modern climate. These findings suggest that contemporary biodiversity patterns may be affected by processes at divergent temporal scales.
William Rupert Moore Flynn, Harry Jon Foord Owen, Stuart William David Grieve, and Emily Rebecca Lines
Biogeosciences, 20, 2769–2784, https://doi.org/10.5194/bg-20-2769-2023, https://doi.org/10.5194/bg-20-2769-2023, 2023
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Quantifying vegetation indices is crucial for ecosystem monitoring and modelling. Terrestrial laser scanning (TLS) has potential to accurately measure vegetation indices, but multiple methods exist, with little consensus on best practice. We compare three methods and extract wood-to-plant ratio, a metric used to correct for wood in leaf indices. We show corrective metrics vary with tree structure and variation among methods, highlighting the value of TLS data and importance of rigorous testing.
Haiyang Shi, Geping Luo, Olaf Hellwich, Alishir Kurban, Philippe De Maeyer, and Tim Van de Voorde
Biogeosciences, 20, 2727–2741, https://doi.org/10.5194/bg-20-2727-2023, https://doi.org/10.5194/bg-20-2727-2023, 2023
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In studies on the relationship between ecosystem functions and climate and plant traits, previously used data-driven methods such as multiple regression and random forest may be inadequate for representing causality due to limitations such as covariance between variables. Based on FLUXNET site data, we used a causal graphical model to revisit the control of climate and vegetation traits over ecosystem functions.
Josué Delgado-Balbuena, Henry W. Loescher, Carlos A. Aguirre-Gutiérrez, Teresa Alfaro-Reyna, Luis F. Pineda-Martínez, Rodrigo Vargas, and Tulio Arredondo
Biogeosciences, 20, 2369–2385, https://doi.org/10.5194/bg-20-2369-2023, https://doi.org/10.5194/bg-20-2369-2023, 2023
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In the semiarid grassland, an increase in soil moisture at shallow depths instantly enhances carbon release through respiration. In contrast, deeper soil water controls plant carbon uptake but with a delay of several days. Previous soil conditions, biological activity, and the size and timing of precipitation are factors that determine the amount of carbon released into the atmosphere. Thus, future changes in precipitation patterns could convert ecosystems from carbon sinks to carbon sources.
German Vargas Gutiérrez, Daniel Pérez-Aviles, Nanette Raczka, Damaris Pereira-Arias, Julián Tijerín-Triviño, L. David Pereira-Arias, David Medvigy, Bonnie G. Waring, Ember Morrisey, Edward Brzostek, and Jennifer S. Powers
Biogeosciences, 20, 2143–2160, https://doi.org/10.5194/bg-20-2143-2023, https://doi.org/10.5194/bg-20-2143-2023, 2023
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To study whether nutrient availability controls tropical dry forest responses to reductions in soil moisture, we established the first troughfall exclusion experiment in a tropical dry forest plantation system crossed with a fertilization scheme. We found that the effects of fertilization on net primary productivity are larger than the effects of a ~15 % reduction in soil moisture, although in many cases we observed an interaction between drought and nutrient additions, suggesting colimitation.
Alina Lucia Ludat and Simon Kübler
Biogeosciences, 20, 1991–2012, https://doi.org/10.5194/bg-20-1991-2023, https://doi.org/10.5194/bg-20-1991-2023, 2023
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Satellite-based analysis illustrates the impact of geological processes for the stability of the ecosystem in the Mara River basin (Kenya/Tanzania). Newly detected fault activity influences the course of river networks and modifies erosion–deposition patterns. Tectonic surface features and variations in rock chemistry lead to localized enhancement of clay and soil moisture values and seasonally stabilised vegetation growth patterns in this climatically vulnerable region.
Erica Jaakkola, Antje Gärtner, Anna Maria Jönsson, Karl Ljung, Per-Ola Olsson, and Thomas Holst
Biogeosciences, 20, 803–826, https://doi.org/10.5194/bg-20-803-2023, https://doi.org/10.5194/bg-20-803-2023, 2023
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Increased spruce bark beetle outbreaks were recently seen in Sweden. When Norway spruce trees are attacked, they increase their production of VOCs, attempting to kill the beetles. We provide new insights into how the Norway spruce act when infested and found the emitted volatiles to increase up to 700 times and saw a change in compound blend. We estimate that the 2020 bark beetle outbreak in Sweden could have increased the total monoterpene emissions from the forest by more than 10 %.
Georg Wohlfahrt, Albin Hammerle, Felix M. Spielmann, Florian Kitz, and Chuixiang Yi
Biogeosciences, 20, 589–596, https://doi.org/10.5194/bg-20-589-2023, https://doi.org/10.5194/bg-20-589-2023, 2023
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The trace gas carbonyl sulfide (COS), which is taken up by plant leaves in a process very similar to photosynthesis, is thought to be a promising proxy for the gross uptake of carbon dioxide by plants. Here we propose a new framework for estimating a key metric to that end, the so-called leaf relative uptake rate. The values we deduce by applying principles of plant optimality are considerably lower than published values and may help reduce the uncertainty of the global COS budget.
François Jonard, Andrew F. Feldman, Daniel J. Short Gianotti, and Dara Entekhabi
Biogeosciences, 19, 5575–5590, https://doi.org/10.5194/bg-19-5575-2022, https://doi.org/10.5194/bg-19-5575-2022, 2022
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We investigate the spatial and temporal patterns of light and water limitation in plant function at the ecosystem scale. Using satellite observations, we characterize the nonlinear relationships between sun-induced chlorophyll fluorescence (SIF) and water and light availability. This study highlights that soil moisture limitations on SIF are found primarily in drier environments, while light limitations are found in intermediately wet regions.
Nikolai Knapp, Sabine Attinger, and Andreas Huth
Biogeosciences, 19, 4929–4944, https://doi.org/10.5194/bg-19-4929-2022, https://doi.org/10.5194/bg-19-4929-2022, 2022
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The biomass of forests is determined by forest growth and mortality. These quantities can be estimated with different methods such as inventories, remote sensing and modeling. These methods are usually being applied at different spatial scales. The scales influence the obtained frequency distributions of biomass, growth and mortality. This study suggests how to transfer between scales, when using forest models of different complexity for a tropical forest.
Kai Chen, Kevin S. Burgess, Fangliang He, Xiang-Yun Yang, Lian-Ming Gao, and De-Zhu Li
Biogeosciences, 19, 4801–4810, https://doi.org/10.5194/bg-19-4801-2022, https://doi.org/10.5194/bg-19-4801-2022, 2022
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Why does plants' distributional range size vary enormously? This study provides evidence that seed mass, intraspecific seed mass variation, seed dispersal mode and phylogeny contribute to explaining species distribution variation on a geographic scale. Our study clearly shows the importance of including seed life-history traits in modeling and predicting the impact of climate change on species distribution of seed plants.
Ying Ying Chen, Huan Yang, Gen Sheng Bao, Xiao Pan Pang, and Zheng Gang Guo
Biogeosciences, 19, 4521–4532, https://doi.org/10.5194/bg-19-4521-2022, https://doi.org/10.5194/bg-19-4521-2022, 2022
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Investigating the effect of the presence of plateau pikas on ecosystem services of alpine meadows is helpful to understand the role of the presence of small mammalian herbivores in grasslands. The results of this study showed that the presence of plateau pikas led to higher biodiversity conservation, soil nitrogen and phosphorus maintenance, and carbon sequestration of alpine meadows, whereas it led to lower forage available to livestock and water conservation of alpine meadows.
Clement Jean Frédéric Delcourt and Sander Veraverbeke
Biogeosciences, 19, 4499–4520, https://doi.org/10.5194/bg-19-4499-2022, https://doi.org/10.5194/bg-19-4499-2022, 2022
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This study provides new equations that can be used to estimate aboveground tree biomass in larch-dominated forests of northeast Siberia. Applying these equations to 53 forest stands in the Republic of Sakha (Russia) resulted in significantly larger biomass stocks than when using existing equations. The data presented in this work can help refine biomass estimates in Siberian boreal forests. This is essential to assess changes in boreal vegetation and carbon dynamics.
Iris Johanna Aalto, Eduardo Eiji Maeda, Janne Heiskanen, Eljas Kullervo Aalto, and Petri Kauko Emil Pellikka
Biogeosciences, 19, 4227–4247, https://doi.org/10.5194/bg-19-4227-2022, https://doi.org/10.5194/bg-19-4227-2022, 2022
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Tree canopies are strong moderators of understory climatic conditions. In tropical areas, trees cool down the microclimates. Using remote sensing and field measurements we show how even intermediate canopy cover and agroforestry trees contributed to buffering the hottest temperatures in Kenya. The cooling effect was the greatest during hot days and in lowland areas, where the ambient temperatures were high. Adopting agroforestry practices in the area could assist in mitigating climate change.
Jing Wang and Xuefa Wen
Biogeosciences, 19, 4197–4208, https://doi.org/10.5194/bg-19-4197-2022, https://doi.org/10.5194/bg-19-4197-2022, 2022
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Excess radiation and low temperatures exacerbate drought impacts on canopy conductance (Gs) among transects. The primary determinant of drought stress on Gs was soil moisture on the Loess Plateau (LP) and the Mongolian Plateau (MP), whereas it was the vapor pressure deficit on the Tibetan Plateau (TP). Radiation exhibited a negative effect on Gs via drought stress within transects, while temperature had negative effects on stomatal conductance on the TP but no effect on the LP and MP.
Sylvain Monteux, Janine Mariën, and Eveline J. Krab
Biogeosciences, 19, 4089–4105, https://doi.org/10.5194/bg-19-4089-2022, https://doi.org/10.5194/bg-19-4089-2022, 2022
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Quantifying the feedback from the decomposition of thawing permafrost soils is crucial to establish adequate climate warming mitigation scenarios. Past efforts have focused on abiotic and to some extent microbial drivers of decomposition but not biotic drivers such as soil fauna. We added soil fauna (Collembola Folsomia candida) to permafrost, which introduced bacterial taxa without affecting bacterial communities as a whole but increased CO2 production (+12 %), presumably due to priming.
Mirjam Pfeiffer, Munir P. Hoffmann, Simon Scheiter, William Nelson, Johannes Isselstein, Kingsley Ayisi, Jude J. Odhiambo, and Reimund Rötter
Biogeosciences, 19, 3935–3958, https://doi.org/10.5194/bg-19-3935-2022, https://doi.org/10.5194/bg-19-3935-2022, 2022
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Smallholder farmers face challenges due to poor land management and climate change. We linked the APSIM crop model and the aDGVM2 vegetation model to investigate integrated management options that enhance ecosystem functions and services. Sustainable intensification moderately increased yields. Crop residue grazing reduced feed gaps but not for dry-to-wet season transitions. Measures to improve soil water and nutrient status are recommended. Landscape-level ecosystem management is essential.
Marina Corrêa Scalon, Imma Oliveras Menor, Renata Freitag, Karine S. Peixoto, Sami W. Rifai, Beatriz Schwantes Marimon, Ben Hur Marimon Junior, and Yadvinder Malhi
Biogeosciences, 19, 3649–3661, https://doi.org/10.5194/bg-19-3649-2022, https://doi.org/10.5194/bg-19-3649-2022, 2022
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We investigated dynamic nutrient flow and demand in a typical savanna and a transition forest to understand how similar soils and the same climate dominated by savanna vegetation can also support forest-like formations. Savanna relied on nutrient resorption from wood, and nutrient demand was equally partitioned between leaves, wood and fine roots. Transition forest relied on resorption from the canopy biomass and nutrient demand was predominantly driven by leaves.
Emma Bousquet, Arnaud Mialon, Nemesio Rodriguez-Fernandez, Stéphane Mermoz, and Yann Kerr
Biogeosciences, 19, 3317–3336, https://doi.org/10.5194/bg-19-3317-2022, https://doi.org/10.5194/bg-19-3317-2022, 2022
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Pre- and post-fire values of four climate variables and four vegetation variables were analysed at the global scale, in order to observe (i) the general fire likelihood factors and (ii) the vegetation recovery trends over various biomes. The main result of this study is that L-band vegetation optical depth (L-VOD) is the most impacted vegetation variable and takes the longest to recover over dense forests. L-VOD could then be useful for post-fire vegetation recovery studies.
Chen Yang, Yue Shi, Wenjuan Sun, Jiangling Zhu, Chengjun Ji, Yuhao Feng, Suhui Ma, Zhaodi Guo, and Jingyun Fang
Biogeosciences, 19, 2989–2999, https://doi.org/10.5194/bg-19-2989-2022, https://doi.org/10.5194/bg-19-2989-2022, 2022
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Quantifying China's forest biomass C pool is important in understanding C cycling in forests. However, most of studies on forest biomass C pool were limited to the period of 2004–2008. Here, we used a biomass expansion factor method to estimate C pool from 1977 to 2018. The results suggest that afforestation practices, forest growth, and environmental changes were the main drivers of increased C sink. Thus, this study provided an essential basis for achieving China's C neutrality target.
Anne Schucknecht, Bumsuk Seo, Alexander Krämer, Sarah Asam, Clement Atzberger, and Ralf Kiese
Biogeosciences, 19, 2699–2727, https://doi.org/10.5194/bg-19-2699-2022, https://doi.org/10.5194/bg-19-2699-2022, 2022
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Actual maps of grassland traits could improve local farm management and support environmental assessments. We developed, assessed, and applied models to estimate dry biomass and plant nitrogen (N) concentration in pre-Alpine grasslands with drone-based multispectral data and canopy height information. Our results indicate that machine learning algorithms are able to estimate both parameters but reach a better level of performance for biomass.
Ramona J. Heim, Andrey Yurtaev, Anna Bucharova, Wieland Heim, Valeriya Kutskir, Klaus-Holger Knorr, Christian Lampei, Alexandr Pechkin, Dora Schilling, Farid Sulkarnaev, and Norbert Hölzel
Biogeosciences, 19, 2729–2740, https://doi.org/10.5194/bg-19-2729-2022, https://doi.org/10.5194/bg-19-2729-2022, 2022
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Fires will probably increase in Arctic regions due to climate change. Yet, the long-term effects of tundra fires on carbon (C) and nitrogen (N) stocks and cycling are still unclear. We investigated the long-term fire effects on C and N stocks and cycling in soil and aboveground living biomass.
We found that tundra fires did not affect total C and N stocks because a major part of the stocks was located belowground in soils which were largely unaltered by fire.
Aileen B. Baird, Edward J. Bannister, A. Robert MacKenzie, and Francis D. Pope
Biogeosciences, 19, 2653–2669, https://doi.org/10.5194/bg-19-2653-2022, https://doi.org/10.5194/bg-19-2653-2022, 2022
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Forest environments contain a wide variety of airborne biological particles (bioaerosols) important for plant and animal health and biosphere–atmosphere interactions. Using low-cost sensors and a free-air carbon dioxide enrichment (FACE) experiment, we monitor the impact of enhanced CO2 on airborne particles. No effect of the enhanced CO2 treatment on total particle concentrations was observed, but a potential suppression of high concentration bioaerosol events was detected under enhanced CO2.
Melanie S. Verlinden, Hamada AbdElgawad, Arne Ven, Lore T. Verryckt, Sebastian Wieneke, Ivan A. Janssens, and Sara Vicca
Biogeosciences, 19, 2353–2364, https://doi.org/10.5194/bg-19-2353-2022, https://doi.org/10.5194/bg-19-2353-2022, 2022
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Zea mays grows in mesocosms with different soil nutrition levels. At low phosphorus (P) availability, leaf physiological activity initially decreased strongly. P stress decreased over the season. Arbuscular mycorrhizal fungi (AMF) symbiosis increased over the season. AMF symbiosis is most likely responsible for gradual reduction in P stress.
Guoyu Lan, Bangqian Chen, Chuan Yang, Rui Sun, Zhixiang Wu, and Xicai Zhang
Biogeosciences, 19, 1995–2005, https://doi.org/10.5194/bg-19-1995-2022, https://doi.org/10.5194/bg-19-1995-2022, 2022
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Little is known about the impact of rubber plantations on diversity of the Great Mekong Subregion. In this study, we uncovered latitudinal gradients of plant diversity of rubber plantations. Exotic species with high dominance result in loss of plant diversity of rubber plantations. Not all exotic species would reduce plant diversity of rubber plantations. Much more effort should be made to balance agricultural production with conservation goals in this region.
Ulrike Hiltner, Andreas Huth, and Rico Fischer
Biogeosciences, 19, 1891–1911, https://doi.org/10.5194/bg-19-1891-2022, https://doi.org/10.5194/bg-19-1891-2022, 2022
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Quantifying biomass loss rates due to stem mortality is important for estimating the role of tropical forests in the global carbon cycle. We analyse the consequences of long-term elevated stem mortality for tropical forest dynamics and biomass loss. Based on simulations, we developed a statistical model to estimate biomass loss rates of forests in different successional states from forest attributes. Assuming a doubling of tree mortality, biomass loss increased from 3.2 % yr-1 to 4.5 % yr-1.
Jon Cranko Page, Martin G. De Kauwe, Gab Abramowitz, Jamie Cleverly, Nina Hinko-Najera, Mark J. Hovenden, Yao Liu, Andy J. Pitman, and Kiona Ogle
Biogeosciences, 19, 1913–1932, https://doi.org/10.5194/bg-19-1913-2022, https://doi.org/10.5194/bg-19-1913-2022, 2022
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Although vegetation responds to climate at a wide range of timescales, models of the land carbon sink often ignore responses that do not occur instantly. In this study, we explore the timescales at which Australian ecosystems respond to climate. We identified that carbon and water fluxes can be modelled more accurately if we include environmental drivers from up to a year in the past. The importance of antecedent conditions is related to ecosystem aridity but is also influenced by other factors.
Qing Sun, Valentin H. Klaus, Raphaël Wittwer, Yujie Liu, Marcel G. A. van der Heijden, Anna K. Gilgen, and Nina Buchmann
Biogeosciences, 19, 1853–1869, https://doi.org/10.5194/bg-19-1853-2022, https://doi.org/10.5194/bg-19-1853-2022, 2022
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Drought is one of the biggest challenges for future food production globally. During a simulated drought, pea and barley mainly relied on water from shallow soil depths, independent of different cropping systems.
Cited articles
Anderson, J. A. R.: The structure and development of the peat swamps of Sarawak, J. Trop. Geogr., 18, 7–16, 1964.
Apolinário, F. E. and Martius, C.: Ecological role of termites (Insecta, Isoptera) in tree trunks in central Amazonian rain forests, For. Ecol. Manage., 194, 23–28, 2004.
Appanah, S., and Turnbull, J. M.: A Review of Dipterocarps: Taxonomy, ecology and silviculture, Center for International Forestry Research, Bogor, Indonesia, 220 pp., 1998.
Ashton, P. S.: Ecological studies in the mixed dipterocarp forests of Brunei state, Oxford Forest. Memoirs, 25, 1–75, 1964.
Ashton, P. S.: Report on research undertaken during the years 1963-1967 on the ecology of Mixed Dipterocarp Forest in Sarawak, University of Aberdeen and Ministry of Overseas Development, London, 1973.
Ashton, P. S.: On the Forests of Tropical Asia: Lest the Memory Fade, The University of Chicago Press, Chicago, 670 pp., 2015.
Ashton, P. S. and Hall, P.: Comparisons of structure among mixed dipterocarp forests of north-western Borneo, J. Ecol., 80, 459–481, 1992.
Augspurger, C. K. and Kelly, C. K.: Pathogen mortality of tropical tree seedlings: experimental studies of the effects of dispersal distance, seedling density, and light conditions, Oecologia, 61, 211–217, 1984.
Avery, T. E., and Burkhart, H. E.: Forest measurements, McGraw-Hill, 2002.
Bagchee, K.: Fungal diseases of sal (Shores robusta Gaertn.) IV Fomes caraphylli (Rac.) Bres, A destructive heartrot of sal, Indian Forest Records, Mycology, 2, 25–59, 1961.
Baillie, I. C., Ashton, P. S., Court, M. N., Anderson, J. A. R., Fitzpatrick, E. A., and Tinsley, J.: Site characteristics and the distribution of tree species in mixed dipterocarp forest on Tertiary sediments in Central Sarawak, Malaysia, J. Trop. Ecol., 3, 201–220, 1987.
Baillie, I. C., Ashton, P. S., Chin, S. P., Davies, S. J., Palmiotto, P. A., Russo, S. E., and Tan, S.: Spatial associations of humus, nutrients, and soils in mixed dipterocarp forest at Lambir, Sarawak, Malaysian Borneo, J. Trop. Ecol., 22, 543–553, 2006.
Baker, P. J., Bunyavejchewin, S., Oliver, C. D., and Ashton, P. S.: Disturbance history and historical stand dynamics of a seasonal tropical forest in Western Thailand, Ecol. Monogr., 75, 317–343, 2005.
Bakshi, B. K.: Heart rot of Sal in India, Phytopathological News, 6, 45–46, 1960.
Banin, L., Lewis, S. L., Lopez-Gonzalez, G., Baker, T. R., Quesada, C. A., Chao, K.-J., Burslem, D. F. R. P., Nilus, R., Abu Salim, K., Keeling, H. C., Tan, S., Davies, S. J., Monteagudo Mendoza, A., Vásquez, R., Lloyd, J., Neill, D. A., Pitman, N., and Phillips, O. L.: Tropical forest wood production: a cross-continental comparison, J. Ecol., 102, 1025–1037, 2014.
Bastin, J. F., Barbier, N., Réjou-Méchain, M., Fayolle, A., Gourlet-Fleury, S., Maniatis, D., de Haulleville, T., Baya, F., Beeckman, H., Beina, D., Couteron, P., Chuyong, G., Dauby, G., Doucet, J. L., Droissart, V., Dufrêne, M., Ewango, C., Gillet, J. F., Gonmadje, C. H., Hart, T., Kavali, T., Kenfack, D., Libalah, M., Malhi, Y., Makana, J. R., Pélissier, R., Ploton, P., Serckx, A., Sonké, B., Stevart, T., Thomas, D. W., De Cannière, C., and Bogaert, J.: Seeing Central African forests through their largest trees, Scientific Reports, 5, 13156, https://doi.org/10.1038/srep13156, 2015.
Bates, D., Maechler, M., Bolker, B., and Walker, S.: lme4: Linear mixed-effects models using Eigen and S4. R package version 1.1–7, http://CRAN.R-project.org/package=lme4, 2014.
Bisset, N. G., Diaz, M. A., Ehret, C., Ourisson, G., Palmade, M., Patil, F., Pesnelle, P., and Streith, J.: Etudes chimio-taxonomiques dans la famille des diptérocarpacées-II.: Constituants du genre Diptérocarpus gaertn. F. Essai de classification chimio-taxonomique, Phytochemistry, 5, 865–880, 1966.
Bisset, N. G., Chavanel, V., Lantz, J.-P., and Wolff, R. E.: Constituants sesquiterpéniques et triterpéniques des résines du genre Shorea, Phytochemistry, 10, 2451–2463, 1971.
Bjurman, J. and Viitanen, H.: Effect of wet storage on subsequent colonisation and decay by Coniophora puteana at different moisture contents, Mater. Organis., 30, 259–277, 1996.
Boddy, L.: Fungal community ecology and wood decomposition processes in Angiosperms: From standing tree to complete decay of coarse woody debris, Ecol. Bullet., 43–56, 2001.
Boddy, L. and Rayner, A. D. M.: Orings of decay in living deciduous trees; the role of moisture content and a re-appraisal of the expanded concept of decay, New Phytol., 94, 623–641, 1983.
Boddy, L. and Watkinson, S. C.: Wood decomposition, higher fungi, and their role in nutrient redistribution, Can. J. Botany, 73, 1377–1383, 1995.
Bolker, B. M., Brooks, M. E., Clark, C. J., Geange, S. W., Poulsen, J. R., Stevens, M. H. H., and White, J.-S. S.: Generalized linear mixed models: a practical guide for ecology and evolution, Trends Ecol. Evol., 24, 127–135, 2009.
Brienen, R. J. W. and Zuidema, P. A.: Lifetime growth patterns and ages of Bolivian rain forest trees obtained by tree ring analysis, J. Ecol., 94, 481–493, 2006.
Brown, I. F., Martinelli, L. A., Thomas, W. W., Moreira, M. Z., Cid Ferreira, C. A., and Victoria, R. A.: Uncertainty in the biomass of Amazonian forests: An example from Rondônia, Brazil, For. Ecol. Manage., 75, 175–189, 1995.
Bryant, J. P., Chapin, F. S., III, and Klein, D. R.: Carbon/nutrient balance of boreal plants in relation to vertebrate herbivory, Oikos, 40, 357–368, 1983.
Bultman, J. D. and Southwell, C. R.: Natural resistance of tropical American woods to terrestrial wood-destroying organisms, Biotropica, 8, 71–95, 1976.
Bürgi, A., Rinchen, G. F., and Dorji, T.: Structure, productivity, regeneration and possible utilisation of the Fir (Abies densa Griff.) forests in central Chumi Valley, Central Bhutan, 1992.
Burnham, K. P. and Anderson, D. R.: Model Selection and Multimodel Inference: a Practical Information-Theoretic Approach, Springer Science & Business Media, New York, 2002.
Chave, J., Andalo, C., Brown, S., Cairns, M. A., Chambers, J. Q., Eamus, D., Folster, H., Fromard, F., Higuchi, N., Kira, T., Lescure, J. P., Nelson, B. W., Ogawa, H., Puig, H., Riera, B., and Yamakura, T.: Tree allometry and improved estimation of carbon stocks and balance in tropical forests, Oecologia, 145, 87–99, 2005.
Chin, S. P.: Soil test methods, Agriculture Research Centre, Department of Agriculture, Semongok, Kuching, Malaysia, p. 73, 2002.
Clark, D. B. and Clark, D. A.: Landscape-scale variation in forest structure and biomass in a tropical rain forest, For. Ecol. Manage., 137, 185–198, 2000.
Cockle, K. L., Martin, K., and Robledo, G.: Linking fungi, trees, and hole-using birds in a neotropical tree-cavity network: Pathways of cavity production and implications for conservation, For. Ecol. Manage., 264, 210–219, 2012.
Comita, L. S., Muller-Landau, H. C., Aguilar, S., and Hubbell, S. P.: Asymmetric Density Dependence Shapes Species Abundances in a Tropical Tree Community, Science, 329, 330–332, 2010.
Coomes, D. A. and Grubb, P. J.: Impacts of root competition in forests and woodlands: A theoretical framework and review of experiments, Ecol. Monogr., 70, 171–207, 2000.
Cornwell, W. K., Cornelissen, J. H. C., Allison, S. D., Bauhus, J., Eggleton, P., Preston, C. M., Scarff, F., Weedon, J. T., Wirth, C., and Zanne, A. E.: Plant traits and wood fates across the globe: rotted, burned, or consumed?, Global Change Biol., 15, 2431–2449, 2009.
Davies, S. J., Tan, S., LaFrankie, J. V., and Potts, M. D.: Soil-related floristic variation in the hyperdiverse dipterocarp forest in Lambir Hills, Sarawak, in: Pollination Ecology and Rain Forest Diversity, Sarawak Studies, edited by: Roubik, D. W., Sakai, S., and Hamid, A., Ecological Studies, Springer-Verlag, New York, New York, 22–34, 2005.
Deflorio, G., Fink, S., and Schwarze, F. M. R.: Detection of incipient decay in tree stems with sonic tomography after wounding and fungal inoculation, Wood Sci. Technol., 42, 117–132, 2008.
Dickinson, T. A. and Tanner, E. V. J.: Exploitation of hollow trunks by tropical trees, Biotropica, 10, 231–233, 1978.
Donnelly, D. P. and Boddy, L.: Developmental and morphological responses of mycelial systems of Stropharia caerulea and Phanerochaete velutina to soil nutrient enrichment, New Phytol., 138, 519–531, 1998.
Duchesne, L. C., Hubbes, M., and Jeng, R. S.: Biochemistry and molecular biology of defense reactions in the xylem of Angiosperm trees, in: Defense Mechanisms of Woody Plants against Fungi, edited by: Blanchette, R. A., and Biggs, A. R., Springer, 133–146, 1992.
Edman, M., Möller, R., and Ericson, L.: Effects of enhanced tree growth rate on the decay capacities of three saprotrophic wood-fungi, For. Ecol. Manage., 232, 12–18, 2006.
Eleuterio, A. A.: Wood Decay in Living Trees in Eastern Amazonia, Brazil, Ph.D., University of Florida, 102 pp., 2011.
FAO: World reference base for soil resources, World Soil Resources Report 103, Food & Agriculture Organisation of United Nations, Rome, 2006.
FIDP: An Inventory of the Mixed Dipterocarp Forest of Sarawak 1969–1972, FIDP Technical Report 2, Forest Industries Development Project, Kuala Lumpur, 1974a.
FIDP: A description of methodology and techniques used in the inventory of selected areas of Mixed Dipterocarp Forest in Sarawak, Working Paper 24, Forest Industries Development Project, Kuala Lumpur, 1974b.
Fine, P. V. A., Miller, Z. J., Mesones, I., Irazuzta, S., Appel, H. M., Stevens, M. H. H., Saksjarvi, I., Schultz, J. C., and Coley, P. D.: The growth-defense trade-off and habitat specialization by plants in Amazonian forests, Ecology, 87, 150–162, 2006.
Franklin, J. F., Shugart, H. H., and Harmon, M. E.: Tree death as an ecological process, Bioscience, 37, 550–556, 1987.
Freschet, G. T., Weedon, J. T., Aerts, R., van Hal, J. R., and Cornelissen, J. H. C.: Interspecific differences in wood decay rates: insights from a new short-term method to study long-term wood decomposition, J. Ecol., 100, 161–170, 2012.
Gale, N. and Hall, P.: Factors Determining the Modes of Tree Death in Three Bornean Rain Forests, J. Vegetat. Sci., 12, 337–346, 2001.
Gilbert, G. S.: Evolutionary ecology of plant diseases in natural ecosystems, Annu. Rev. Phytopathol., 40, 13–43, 2002.
Goldstein, H., Browne, W., and Rasbash, J.: Partitioning variation in multilevel models, in: Understanding Statistics: Statistical Issues in Psychology, Educat. Soc. Sci., 223–231, 2002.
Gratzer, G., Rai, P. B., and Glatzel, G.: Ecology of Abies densa Forests of the IFMP–Ura, Bhutan: Research Report in the Framework of IFMP, Integrated Forest Management Project, 1997.
Guariguata, M. R. and Gilbert, G. S.: Interspecific variation in rates of trunk wound closure in a Panamanian lowland forest, Biotropica, 28, 23–29, 1996.
Harmon, M. E., Franklin, J. F., Swanson, F. J., Sollins, P., Gregory, S. V., Lattin, J. D., Anderson, N. H., Cline, S. P., Aumen, N. G., Sedell, J. R., Lienkaemper, G. W., Cromack, K. J., and Cummins, K. W.: Ecology of coarse woody debris in temperate ecosystems, Adv. Ecol. Res., 15, 133–302, 1986.
Heineman, K. D., Jensen, E., Shapland, A., Bogenrief, B., Tan, S., Rebarber, R., and Russo, S. E.: The effects of belowground resources on aboveground allometric growth in Bornean tree species, For. Ecol. Manage., 261, 1820–1832, 2011.
Hooper, R. G.: Longleaf pines used for cavities by red-cockaded woodpeckers, The Journal of Wildlife Management, 52, 392–398, 1988.
Janzen, D. H.: Why tropical trees have rotten cores, Biotropica, 8, p. 110, 1976.
King, D. A., Davies, S. J., Tan, S., and Noor, N. S. M.: The role of wood density and stem support costs in the growth and mortality of tropical trees, J. Ecol., 94, 670–680, 2006.
Kirker, G. T., Blodgett, A. B., Arango, R. A., Lebow, P. K., and Clausen, C. A.: The role of extractives in naturally durable wood species, Int. Biodeterior. Biodegrad., 82, 53–58, 2013.
Kochsiek, A., Tan, S., and Russo, S. E.: Fine root dynamics in relation to nutrients in oligotrophic Bornean rain forest soils, Plant Ecol., 214, 869–882, 2013.
Kovalchuk, A., Keriö, S., Oghenekaro, A. O., Jaber, E., Raffaello, T., and Asiegbu, F. O.: Antimicrobial defenses and resistance in forest trees: Challenges and perspectives in a genomic era, Annu. Rev. Phytopathol., 51, 221–244, 2013.
Lee, H. S., Davies, S. J., LaFrankie, J. V., Tan, S., Yamakura, T., Itoh, A., Ohkubo, T., and Ashton, P. S.: Floristic and structural diversity of mixed dipterocarp forests in Lambir Hills National Park, Sarawak, Malaysia, J. Trop. For. Sci., 14, 379–400, 2002.
Little, R. J. A., and Rubin, D. B.: Statistical Analysis with Missing Data, J. Wiley & Sons, New York, 1987.
Loehle, C.: Tree life history strategies: the role of defenses, Can. J. Forest Res., 18, 209–222, 1988.
Mangan, S. A., Schnitzer, S. A., Herre, E. A., Mack, K. M. L., Valencia, M. C., Sanchez, E. I., and Bever, J. D.: Negative plant-soil feedback predicts tree-species relative abundance in a tropical forest, Nature, 466, 752–755, 2010.
Mattheck, C., Bethge, K., and Tesari, I.: Shear effects on failure of hollow trees, Trees, 20, 329–333, 2006.
Merrill, W., and Cowling, E. B.: Role of nitrogen in wood deterioration: amounts and distribution of nitrogen in tree stems, Can. J. Botany, 44, 1555–1580, 1966.
Mori, S., Itoh, A., Nanami, S., Tan, S., Chong, L., and Yamakura, T.: Effect of wood density and water permeability on wood decomposition rates of 32 Bornean rainforest trees, J. of Plant Ecol., 7, 356–7363, 2013.
Nakagawa, S. and Schielzeth, H.: A general and simple method for obtaining R2 from generalized linear mixed-effects models, Method. Ecol. Evolut., 4, 133–142, 2013.
Nicolotti, G., Socco, L., Martinis, R., Godio, A., and Sambuelli, L.: Application and comparison of three tomographic techniques for detection of decay in trees, J. Arboricul., 29, 66–78, 2003.
Nogueira, E. M., Nelson, B. W., and Fearnside, P. M.: Volume and biomass of trees in central Amazonia: influence of irregularly shaped and hollow trunks, For. Ecol. Manage., 227, 14–21, 2006.
Norhayati, M., Nazlima, N., Nor-Azah, A., Laily, D., Zuraiati, Z., Wan-Ahmad, J., and Noramly, M.: Chemical composition, antioxidant and antibacterial properties of the essential oils of Shorea acuminata (Dipterocarpaceae), J. Essent. Oil-Bear. Plants, 14, 708–716, 2013.
Ohkubo, T.: Spatial and topographic patterns of canopy gap formation in a mixed dipterocarp forest in Sarawak, Malaysia., Tropics, 16, 152–153, 2007.
Panzer, K. F.: Quantification of decay and related volume loss in tropical forest inventories, Mitt. Bundesforsch, 109, 117–128, 1975.
Paoli, G., Curran, L., and Slik, J.: Soil nutrients affect spatial patterns of aboveground biomass and emergent tree density in southwestern Borneo, Oecologia, 155, 287–299, 2008a.
Paoli, G. D., Curran, L. M., and Slik, J. W. F.: Soil nutrients affect spatial patterns of aboveground biomass and emergent tree density in southwestern Borneo, Oecologia, 155, 287–299, 2008b.
Pearce, R. B.: Tansley Review No. 87. Antimicrobial defences in the wood of living trees, New Phytol., 132, 203–233, 1996.
Peay, K. G. and Bruns, T. D.: Spore dispersal of basidiomycete fungi at the landscape scale is driven by stochastic and deterministic processes and generates variability in plant–fungal interactions, New Phytol., 204, 180–191, 2014.
Peay, K. G., Kennedy, P. G., Davies, S. J., Tan, S., and Bruns, T. D.: Potential link between plant and fungal distributions in a dipterocarp rainforest: community and phylogenetic structure of tropical ectomycorrhizal fungi across a plant and soil ecotone, New Phytol., 185, 529–542, 2009.
Potts, M. D., Ashton, P. S., Kaufman, L. S., and Plotkin, J. B.: Habitat patterns in tropical rain forests: A comparison of 105 plots in northwest Borneo, Ecology, 83, 2782–2797, 2002.
Putz, F. E., Coley, P. D., Lu, K., Montalvo, A., and Aiello, A.: Uprooting and snapping of trees – structural determinants and ecological consequences, Can. J. Forest Res., 13, 1011–1020, 1983.
R Core Development Team: R: a language and environment for statistical computing, Vienna, Austria, available at: http://www.R-project.org/ (last access: 1 April 2015), 2014.
Ranius, T., Niklasson, M., and Berg, N.: Development of tree hollows in pedunculate oak (Quercus robur), For. Ecol. Manage., 257, 303–310, 2009.
Romero, C. and Bolker, B. M.: Effects of stem anatomical and structural traits on responses to stem damage: an experimental study in the Bolivian Amazon, Can. J. Forest Res., 38, 611–618, 2008.
Russo, S. E., Davies, S. J., King, D. A., and Tan, S.: Soil-related performance variation and distributions of tree species in a Bornean rain forest, J. Ecol., 93, 879–889, 2005.
Russo, S. E., Brown, P., Tan, S., and Davies, S. J.: Interspecific demographic trade-offs and soil-related habitat associations of tree species along resource gradients, J. Ecol., 96, 192–203, 2008.
Russo, S. E., Legge, R., Weber, K. A., Brodie, E. L., Goldfarb, K. C., Benson, A. K., and Tan, S.: Bacterial community structure of contrasting soils underlying Bornean rain forests: Inferences from microarray and next-generation sequencing methods, Soil Biol. Biochem., 55, 48–59, 2012.
Ruxton, G. D.: Why are so many trees hollow?, Biol. Lett., 10, 20140555, https://doi.org/10.1098/rsbl.2014.0555, 2014.
Saatchi, S. S., Harris, N. L., Brown, S., Lefsky, M., Mitchard, E. T. A., Salas, W., Zutta, B. R., Buermann, W., Lewis, S. L., Hagen, S., Petrova, S., White, L., Silman, M., and Morel, A.: Benchmark map of forest carbon stocks in tropical regions across three continents, P. Natl. Acad. Sci. USA, 108, 9899–9904, 2011.
Schafer, J. L.: Analysis of Incomplete Multivariate Data, Chapman & Hall, London, 1997.
Schilling, J. S., Ayres, A., Kaffenberger, J. T., and Powers, J. S.: Initial white rot type dominance of wood decomposition and its functional consequences in a regenerating tropical dry forest, Soil Biol. Biochem., 88, 58–68, 2015.
Schwarze, F. W. M. R., Engels, J., and Mattheck, C.: Fungal Strategies of Wood Decay in Trees, Springer, 2000.
Shigo, A. L.: Compartmentalization: A conceptual framework for understanding how trees grow and defend themselves, Annu. Rev. Phytopathol., 22, 189–214, 1984.
Slik, J. W. F., Paoli, G., McGuire, K., Amaral, I., Barroso, J., Bastian, M., Blanc, L., Bongers, F., Boundja, P., Clark, C., Collins, M., Dauby, G., Ding, Y., Doucet, J.-L., Eler, E., Ferreira, L., Forshed, O., Fredriksson, G., Gillet, J.-F., Harris, D., Leal, M., Laumonier, Y., Malhi, Y., Mansor, A., Martin, E., Miyamoto, K., Araujo-Murakami, A., Nagamasu, H., Nilus, R., Nurtjahya, E., Oliveira, Á., Onrizal, O., Parada-Gutierrez, A., Permana, A., Poorter, L., Poulsen, J., Ramirez-Angulo, H., Reitsma, J., Rovero, F., Rozak, A., Sheil, D., Silva-Espejo, J., Silveira, M., Spironelo, W., ter Steege, H., Stevart, T., Navarro-Aguilar, G. E., Sunderland, T., Suzuki, E., Tang, J., Theilade, I., van der Heijden, G., van Valkenburg, J., Van Do, T., Vilanova, E., Vos, V., Wich, S., Wöll, H., Yoneda, T., Zang, R., Zhang, M.-G., and Zweifel, N.: Large trees drive forest aboveground biomass variation in moist lowland forests across the tropics, Global Ecol. Biogeogr., 22, 1261–1271, 2013.
Stockland, J. N., Siitonen, J., and Jonsson, B. G.: Biodiversity in Dead Wood, Cambridge University Press, Cambridge, 509 pp., 2012.
Tan, S., Yamakura, T., Tani, M., Palmiotto, P., Mamit, J. D., Pin, C. S., Davies, S., Ashton, P., and Baillie, I.: Review of soils on the 52-ha long term ecological research plot in mixed dipterocarp forest at Lambir, Sarawak, Malaysian Borneo, Tropics, 18, 61–86, 2009.
Taylor, A. M., Gartner, B. L., and Morrell, J. J.: Heartwood formation and natural durability – a review, Wood and Fiber Science, 34, 587–611, 2002.
van Geffen, K. G., Poorter, L., Sass-Klaassen, U., van Logtestijn, R. S. P., and Cornelissen, J. H. C.: The trait contribution to wood decomposition rates of 15 Neotropical tree species, Ecology, 91, 3686–3697, 2010.
Wagener, W. W. and Davidson, R. W.: Heart rots in living trees, Bot. Rev., 20, 61–134, 1954.
Wang, B. and Qiu, Y. L.: Phylogenetic distribution and evolution of mycorrhizas in land plants, Mycorrhiza, 16, 299–363, 2006.
Weedon, J. T., William, K. C., Johannes, H. C. C., Amy, E. Z., Christian, W., and David, A. C.: Global meta-analysis of wood decomposition rates: a role for trait variation among tree species?, Ecol. Lett., 12, 45–56, 2009.
Whitmore, T. C.: Tropical Rain Forests of the Far East, Clarendon Press, Oxford, 1984.
Wunder, J., Manusch, C., Queloz, V., Brang, P., Ringwald, V., and Bugmann, H.: Does increment coring enhance tree decay? New insights from tomography assessments, Can. J. Forest Res., 43, 711–718, 2013.
Yamada, T.: Defense mechanisms in the sapwood of living trees against microbial infection, J. Forest Res., 6, 127–137, 2001.
Yamakura, T., Hagihara, A., Sukardjo, S., and Ogawa, H.: Aboveground biomass of tropical rain forest stands in Indonesian Borneo, Vegetatio, 68, 71–82, 1986.
Yamakura, T., Kanzaki, M., Itoh, A., Ohkubo, T., Ogino, K., Chai O.K., E., Lee, H. S., and Ashton, P. S.: Forest structure of a tropical rain forest at Lambir, Sarawak with special reference to the dependency of its physiognomic dimensions of topography, Tropics, 6, 1–18, 1996.
Yang, X., Post, W. M., Thornton, P. E., and Jain, A.: The distribution of soil phosphorus for global biogeochemical modeling, Biogeosciences, 10, 2525–2537, https://doi.org/10.5194/bg-10-2525-2013, 2013.
Yang, X., Thornton, P. E., Ricciuto, D. M., and Post, W. M.: The role of phosphorus dynamics in tropical forests – a modeling study using CLM-CNP, Biogeosciences, 11, 1667–1681, https://doi.org/10.5194/bg-11-1667-2014, 2014.
Yoneda, T.: Studies on the rate of decay of wood litter on the forest floor I. Some physical properties of decaying wood, Jap. J. Ecol., 25, 40–46, 1975.
Yu, Q., Yang, D.-Q., Zhang, S. Y., Beaulieu, J., and Duchesne, I.: Genetic variation in decay resistance and its correlation to wood density and growth in white spruce, Can. J. Forest Res., 33, 2177–2183, 2003.
Short summary
Stem rot is a poorly constrained source of error in forest biomass estimates. We quantified frequency and severity of rot in stems felled, drilled, and cored in a Bornean rainforest and the association of stem rot with tree size, taxonomy, and edaphic conditions. Stem rot frequency increased with tree size and varied widely among taxa. Stem rot encompassed 9% of stem volume on average, and the reduction in forest biomass lost to rot was greater on low fertility compared to high fertility soils.
Stem rot is a poorly constrained source of error in forest biomass estimates. We quantified...
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