Articles | Volume 12, issue 23
https://doi.org/10.5194/bg-12-6931-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-12-6931-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
04 Dec 2015
Research article |
| 04 Dec 2015
Why is Trichodesmium abundant in the Kuroshio?
T. Shiozaki
CORRESPONDING AUTHOR
Department of Aquatic Bioscience, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657, Japan
Atmosphere and Ocean Research Institute, The University of Tokyo, Chiba, 277-8564, Japan
S. Takeda
Department of Aquatic Bioscience, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657, Japan
Faculty of Fisheries, Nagasaki University, Nagasaki, 852-8521, Japan
S. Itoh
Atmosphere and Ocean Research Institute, The University of Tokyo, Chiba, 277-8564, Japan
T. Kodama
Department of Aquatic Bioscience, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657, Japan
Japan Sea National Fisheries Research Institute, Fisheries Research Agency, Niigata, 951-8121, Japan
Department of Aquatic Bioscience, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657, Japan
College of Ocean and Earth Sciences, Xiamen University, Xiamen, 361005, China
F. Hashihama
Department of Ocean Sciences, Tokyo University of Marine Science and Technology, Tokyo, 108-8477, Japan
K. Furuya
Department of Aquatic Bioscience, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657, Japan
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Phosphomonoesterase (PME) and phosphodiesterase (PDE) activities over the epipelagic zone are described in the eastern Mediterranean Sea in winter and autumn. The types of concentration kinetics obtained for PDE (saturation at 50 µM, high Km, high turnover times) compared to those of PME (saturation at 1 µM, low Km, low turnover times) are discussed in regard to the possible inequal distribution of PDE and PME in the size continuum of organic material and accessibility to phosphodiesters.
Jenny Hieronymus, Magnus Hieronymus, Matthias Gröger, Jörg Schwinger, Raffaele Bernadello, Etienne Tourigny, Valentina Sicardi, Itzel Ruvalcaba Baroni, and Klaus Wyser
Biogeosciences, 21, 2189–2206, https://doi.org/10.5194/bg-21-2189-2024, https://doi.org/10.5194/bg-21-2189-2024, 2024
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The timing of the net primary production annual maxima in the North Atlantic in the period 1750–2100 is investigated using two Earth system models and the high-emissions scenario SSP5-8.5. It is found that, for most of the region, the annual maxima occur progressively earlier, with the most change occurring after the year 2000. Shifts in the seasonality of the primary production may impact the entire ecosystem, which highlights the need for long-term monitoring campaigns in this area.
Nicole M. Travis, Colette L. Kelly, and Karen L. Casciotti
Biogeosciences, 21, 1985–2004, https://doi.org/10.5194/bg-21-1985-2024, https://doi.org/10.5194/bg-21-1985-2024, 2024
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We conducted experimental manipulations of light level on microbial communities from the primary nitrite maximum. Overall, while individual microbial processes have different directions and magnitudes in their response to increasing light, the net community response is a decline in nitrite production with increasing light. We conclude that while increased light may decrease net nitrite production, high-light conditions alone do not exclude nitrification from occurring in the surface ocean.
Zoë Rebecca van Kemenade, Zeynep Erdem, Ellen Christine Hopmans, Jaap Smede Sinninghe Damsté, and Darci Rush
Biogeosciences, 21, 1517–1532, https://doi.org/10.5194/bg-21-1517-2024, https://doi.org/10.5194/bg-21-1517-2024, 2024
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The California Current system (CCS) hosts the eastern subtropical North Pacific oxygen minimum zone (ESTNP OMZ). This study shows anaerobic ammonium oxidizing (anammox) bacteria cause a loss of bioavailable nitrogen (N) in the ESTNP OMZ throughout the late Quaternary. Anammox occurred during both glacial and interglacial periods and was driven by the supply of organic matter and changes in ocean currents. These findings may have important consequences for biogeochemical models of the CCS.
Cathy Wimart-Rousseau, Tobias Steinhoff, Birgit Klein, Henry Bittig, and Arne Körtzinger
Biogeosciences, 21, 1191–1211, https://doi.org/10.5194/bg-21-1191-2024, https://doi.org/10.5194/bg-21-1191-2024, 2024
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The marine CO2 system can be measured independently and continuously by BGC-Argo floats since numerous pH sensors have been developed to suit these autonomous measurements platforms. By applying the Argo correction routines to float pH data acquired in the subpolar North Atlantic Ocean, we report the uncertainty and lack of objective criteria associated with the choice of the reference method as well the reference depth for the pH correction.
Sabine Mecking and Kyla Drushka
Biogeosciences, 21, 1117–1133, https://doi.org/10.5194/bg-21-1117-2024, https://doi.org/10.5194/bg-21-1117-2024, 2024
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This study investigates whether northeastern North Pacific oxygen changes may be caused by surface density changes in the northwest as water moves along density horizons from the surface into the subsurface ocean. A correlation is found with a lag that about matches the travel time of water from the northwest to the northeast. Salinity is the main driver causing decadal changes in surface density, whereas salinity and temperature contribute about equally to long-term declining density trends.
Takamitsu Ito, Hernan E. Garcia, Zhankun Wang, Shoshiro Minobe, Matthew C. Long, Just Cebrian, James Reagan, Tim Boyer, Christopher Paver, Courtney Bouchard, Yohei Takano, Seth Bushinsky, Ahron Cervania, and Curtis A. Deutsch
Biogeosciences, 21, 747–759, https://doi.org/10.5194/bg-21-747-2024, https://doi.org/10.5194/bg-21-747-2024, 2024
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This study aims to estimate how much oceanic oxygen has been lost and its uncertainties. One major source of uncertainty comes from the statistical gap-filling methods. Outputs from Earth system models are used to generate synthetic observations where oxygen data are extracted from the model output at the location and time of historical oceanographic cruises. Reconstructed oxygen trend is approximately two-thirds of the true trend.
Robert W. Izett, Katja Fennel, Adam C. Stoer, and David P. Nicholson
Biogeosciences, 21, 13–47, https://doi.org/10.5194/bg-21-13-2024, https://doi.org/10.5194/bg-21-13-2024, 2024
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This paper provides an overview of the capacity to expand the global coverage of marine primary production estimates using autonomous ocean-going instruments, called Biogeochemical-Argo floats. We review existing approaches to quantifying primary production using floats, provide examples of the current implementation of the methods, and offer insights into how they can be better exploited. This paper is timely, given the ongoing expansion of the Biogeochemical-Argo array.
Qian Liu, Yingjie Liu, and Xiaofeng Li
Biogeosciences, 20, 4857–4874, https://doi.org/10.5194/bg-20-4857-2023, https://doi.org/10.5194/bg-20-4857-2023, 2023
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In the Southern Ocean, abundant eddies behave opposite to our expectations. That is, anticyclonic (cyclonic) eddies are cold (warm). By investigating the variations of physical and biochemical parameters in eddies, we find that abnormal eddies have unique and significant effects on modulating the parameters. This study fills a gap in understanding the effects of abnormal eddies on physical and biochemical parameters in the Southern Ocean.
Caroline Ulses, Claude Estournel, Patrick Marsaleix, Karline Soetaert, Marine Fourrier, Laurent Coppola, Dominique Lefèvre, Franck Touratier, Catherine Goyet, Véronique Guglielmi, Fayçal Kessouri, Pierre Testor, and Xavier Durrieu de Madron
Biogeosciences, 20, 4683–4710, https://doi.org/10.5194/bg-20-4683-2023, https://doi.org/10.5194/bg-20-4683-2023, 2023
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Deep convection plays a key role in the circulation, thermodynamics, and biogeochemical cycles in the Mediterranean Sea, considered to be a hotspot of biodiversity and climate change. In this study, we investigate the seasonal and annual budget of dissolved inorganic carbon in the deep-convection area of the northwestern Mediterranean Sea.
Daniela König and Alessandro Tagliabue
Biogeosciences, 20, 4197–4212, https://doi.org/10.5194/bg-20-4197-2023, https://doi.org/10.5194/bg-20-4197-2023, 2023
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Using model simulations, we show that natural and anthropogenic changes in the global climate leave a distinct fingerprint in the isotopic signatures of iron in the surface ocean. We find that these climate effects on iron isotopes are often caused by the redistribution of iron from different external sources to the ocean, due to changes in ocean currents, and by changes in algal growth, which take up iron. Thus, isotopes may help detect climate-induced changes in iron supply and algal uptake.
Chloé Baumas, Robin Fuchs, Marc Garel, Jean-Christophe Poggiale, Laurent Memery, Frédéric A. C. Le Moigne, and Christian Tamburini
Biogeosciences, 20, 4165–4182, https://doi.org/10.5194/bg-20-4165-2023, https://doi.org/10.5194/bg-20-4165-2023, 2023
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Through the sink of particles in the ocean, carbon (C) is exported and sequestered when reaching 1000 m. Attempts to quantify C exported vs. C consumed by heterotrophs have increased. Yet most of the conducted estimations have led to C demands several times higher than C export. The choice of parameters greatly impacts the results. As theses parameters are overlooked, non-accurate values are often used. In this study we show that C budgets can be well balanced when using appropriate values.
Anna Belcher, Sian F. Henley, Katharine Hendry, Marianne Wootton, Lisa Friberg, Ursula Dallman, Tong Wang, Christopher Coath, and Clara Manno
Biogeosciences, 20, 3573–3591, https://doi.org/10.5194/bg-20-3573-2023, https://doi.org/10.5194/bg-20-3573-2023, 2023
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The oceans play a crucial role in the uptake of atmospheric carbon dioxide, particularly the Southern Ocean. The biological pumping of carbon from the surface to the deep ocean is key to this. Using sediment trap samples from the Scotia Sea, we examine biogeochemical fluxes of carbon, nitrogen, and biogenic silica and their stable isotope compositions. We find phytoplankton community structure and physically mediated processes are important controls on particulate fluxes to the deep ocean.
Asmita Singh, Susanne Fietz, Sandy J. Thomalla, Nicolas Sanchez, Murat V. Ardelan, Sébastien Moreau, Hanna M. Kauko, Agneta Fransson, Melissa Chierici, Saumik Samanta, Thato N. Mtshali, Alakendra N. Roychoudhury, and Thomas J. Ryan-Keogh
Biogeosciences, 20, 3073–3091, https://doi.org/10.5194/bg-20-3073-2023, https://doi.org/10.5194/bg-20-3073-2023, 2023
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Despite the scarcity of iron in the Southern Ocean, seasonal blooms occur due to changes in nutrient and light availability. Surprisingly, during an autumn bloom in the Antarctic sea-ice zone, the results from incubation experiments showed no significant photophysiological response of phytoplankton to iron addition. This suggests that ambient iron concentrations were sufficient, challenging the notion of iron deficiency in the Southern Ocean through extended iron-replete post-bloom conditions.
Benoît Pasquier, Mark Holzer, Matthew A. Chamberlain, Richard J. Matear, Nathaniel L. Bindoff, and François W. Primeau
Biogeosciences, 20, 2985–3009, https://doi.org/10.5194/bg-20-2985-2023, https://doi.org/10.5194/bg-20-2985-2023, 2023
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Modeling the ocean's carbon and oxygen cycles accurately is challenging. Parameter optimization improves the fit to observed tracers but can introduce artifacts in the biological pump. Organic-matter production and subsurface remineralization rates adjust to compensate for circulation biases, changing the pathways and timescales with which nutrients return to the surface. Circulation biases can thus strongly alter the system’s response to ecological change, even when parameters are optimized.
Priyanka Banerjee
Biogeosciences, 20, 2613–2643, https://doi.org/10.5194/bg-20-2613-2023, https://doi.org/10.5194/bg-20-2613-2023, 2023
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This study shows that atmospheric deposition is the most important source of iron to the upper northern Indian Ocean for phytoplankton growth. This is followed by iron from continental-shelf sediment. Phytoplankton increase following iron addition is possible only with high background levels of nitrate. Vertical mixing is the most important physical process supplying iron to the upper ocean in this region throughout the year. The importance of ocean currents in supplying iron varies seasonally.
Iris Kriest, Julia Getzlaff, Angela Landolfi, Volkmar Sauerland, Markus Schartau, and Andreas Oschlies
Biogeosciences, 20, 2645–2669, https://doi.org/10.5194/bg-20-2645-2023, https://doi.org/10.5194/bg-20-2645-2023, 2023
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Global biogeochemical ocean models are often subjectively assessed and tuned against observations. We applied different strategies to calibrate a global model against observations. Although the calibrated models show similar tracer distributions at the surface, they differ in global biogeochemical fluxes, especially in global particle flux. Simulated global volume of oxygen minimum zones varies strongly with calibration strategy and over time, rendering its temporal extrapolation difficult.
John C. Tracey, Andrew R. Babbin, Elizabeth Wallace, Xin Sun, Katherine L. DuRussel, Claudia Frey, Donald E. Martocello III, Tyler Tamasi, Sergey Oleynik, and Bess B. Ward
Biogeosciences, 20, 2499–2523, https://doi.org/10.5194/bg-20-2499-2023, https://doi.org/10.5194/bg-20-2499-2023, 2023
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Nitrogen (N) is essential for life; thus, its availability plays a key role in determining marine productivity. Using incubations of seawater spiked with a rare form of N measurable on a mass spectrometer, we quantified microbial pathways that determine marine N availability. The results show that pathways that recycle N have higher rates than those that result in its loss from biomass and present new evidence for anaerobic nitrite oxidation, a process long thought to be strictly aerobic.
Amanda Gerotto, Hongrui Zhang, Renata Hanae Nagai, Heather M. Stoll, Rubens César Lopes Figueira, Chuanlian Liu, and Iván Hernández-Almeida
Biogeosciences, 20, 1725–1739, https://doi.org/10.5194/bg-20-1725-2023, https://doi.org/10.5194/bg-20-1725-2023, 2023
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Based on the analysis of the response of coccolithophores’ morphological attributes in a laboratory dissolution experiment and surface sediment samples from the South China Sea, we proposed that the thickness shape (ks) factor of fossil coccoliths together with the normalized ks variation, which is the ratio of the standard deviation of ks (σ) over the mean ks (σ/ks), is a robust and novel proxy to reconstruct past changes in deep ocean carbon chemistry.
Katherine E. Turner, Doug M. Smith, Anna Katavouta, and Richard G. Williams
Biogeosciences, 20, 1671–1690, https://doi.org/10.5194/bg-20-1671-2023, https://doi.org/10.5194/bg-20-1671-2023, 2023
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We present a new method for reconstructing ocean carbon using climate models and temperature and salinity observations. To test this method, we reconstruct modelled carbon using synthetic observations consistent with current sampling programmes. Sensitivity tests show skill in reconstructing carbon trends and variability within the upper 2000 m. Our results indicate that this method can be used for a new global estimate for ocean carbon content.
Alexandre Mignot, Hervé Claustre, Gianpiero Cossarini, Fabrizio D'Ortenzio, Elodie Gutknecht, Julien Lamouroux, Paolo Lazzari, Coralie Perruche, Stefano Salon, Raphaëlle Sauzède, Vincent Taillandier, and Anna Teruzzi
Biogeosciences, 20, 1405–1422, https://doi.org/10.5194/bg-20-1405-2023, https://doi.org/10.5194/bg-20-1405-2023, 2023
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Numerical models of ocean biogeochemistry are becoming a major tool to detect and predict the impact of climate change on marine resources and monitor ocean health. Here, we demonstrate the use of the global array of BGC-Argo floats for the assessment of biogeochemical models. We first detail the handling of the BGC-Argo data set for model assessment purposes. We then present 23 assessment metrics to quantify the consistency of BGC model simulations with respect to BGC-Argo data.
Alban Planchat, Lester Kwiatkowski, Laurent Bopp, Olivier Torres, James R. Christian, Momme Butenschön, Tomas Lovato, Roland Séférian, Matthew A. Chamberlain, Olivier Aumont, Michio Watanabe, Akitomo Yamamoto, Andrew Yool, Tatiana Ilyina, Hiroyuki Tsujino, Kristen M. Krumhardt, Jörg Schwinger, Jerry Tjiputra, John P. Dunne, and Charles Stock
Biogeosciences, 20, 1195–1257, https://doi.org/10.5194/bg-20-1195-2023, https://doi.org/10.5194/bg-20-1195-2023, 2023
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Ocean alkalinity is critical to the uptake of atmospheric carbon and acidification in surface waters. We review the representation of alkalinity and the associated calcium carbonate cycle in Earth system models. While many parameterizations remain present in the latest generation of models, there is a general improvement in the simulated alkalinity distribution. This improvement is related to an increase in the export of biotic calcium carbonate, which closer resembles observations.
Jérôme Pinti, Tim DeVries, Tommy Norin, Camila Serra-Pompei, Roland Proud, David A. Siegel, Thomas Kiørboe, Colleen M. Petrik, Ken H. Andersen, Andrew S. Brierley, and André W. Visser
Biogeosciences, 20, 997–1009, https://doi.org/10.5194/bg-20-997-2023, https://doi.org/10.5194/bg-20-997-2023, 2023
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Large numbers of marine organisms such as zooplankton and fish perform daily vertical migration between the surface (at night) and the depths (in the daytime). This fascinating migration is important for the carbon cycle, as these organisms actively bring carbon to depths where it is stored away from the atmosphere for a long time. Here, we quantify the contributions of different animals to this carbon drawdown and storage and show that fish are important to the biological carbon pump.
Alastair J. M. Lough, Alessandro Tagliabue, Clément Demasy, Joseph A. Resing, Travis Mellett, Neil J. Wyatt, and Maeve C. Lohan
Biogeosciences, 20, 405–420, https://doi.org/10.5194/bg-20-405-2023, https://doi.org/10.5194/bg-20-405-2023, 2023
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Iron is a key nutrient for ocean primary productivity. Hydrothermal vents are a source of iron to the oceans, but the size of this source is poorly understood. This study examines the variability in iron inputs between hydrothermal vents in different geological settings. The vents studied release different amounts of Fe, resulting in plumes with similar dissolved iron concentrations but different particulate concentrations. This will help to refine modelling of iron-limited ocean productivity.
Nicole M. Travis, Colette L. Kelly, Margaret R. Mulholland, and Karen L. Casciotti
Biogeosciences, 20, 325–347, https://doi.org/10.5194/bg-20-325-2023, https://doi.org/10.5194/bg-20-325-2023, 2023
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The primary nitrite maximum is a ubiquitous upper ocean feature where nitrite accumulates, but we still do not understand its formation and the co-occurring microbial processes involved. Using correlative methods and rates measurements, we found strong spatial patterns between environmental conditions and depths of the nitrite maxima, but not the maximum concentrations. Nitrification was the dominant source of nitrite, with occasional high nitrite production from phytoplankton near the coast.
Natacha Le Grix, Jakob Zscheischler, Keith B. Rodgers, Ryohei Yamaguchi, and Thomas L. Frölicher
Biogeosciences, 19, 5807–5835, https://doi.org/10.5194/bg-19-5807-2022, https://doi.org/10.5194/bg-19-5807-2022, 2022
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Compound events threaten marine ecosystems. Here, we investigate the potentially harmful combination of marine heatwaves with low phytoplankton productivity. Using satellite-based observations, we show that these compound events are frequent in the low latitudes. We then investigate the drivers of these compound events using Earth system models. The models share similar drivers in the low latitudes but disagree in the high latitudes due to divergent factors limiting phytoplankton production.
Abigale M. Wyatt, Laure Resplandy, and Adrian Marchetti
Biogeosciences, 19, 5689–5705, https://doi.org/10.5194/bg-19-5689-2022, https://doi.org/10.5194/bg-19-5689-2022, 2022
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Marine heat waves (MHWs) are a frequent event in the northeast Pacific, with a large impact on the region's ecosystems. Large phytoplankton in the North Pacific Transition Zone are greatly affected by decreased nutrients, with less of an impact in the Alaskan Gyre. For small phytoplankton, MHWs increase the spring small phytoplankton population in both regions thanks to reduced light limitation. In both zones, this results in a significant decrease in the ratio of large to small phytoplankton.
Margot C. F. Debyser, Laetitia Pichevin, Robyn E. Tuerena, Paul A. Dodd, Antonia Doncila, and Raja S. Ganeshram
Biogeosciences, 19, 5499–5520, https://doi.org/10.5194/bg-19-5499-2022, https://doi.org/10.5194/bg-19-5499-2022, 2022
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We focus on the exchange of key nutrients for algae production between the Arctic and Atlantic oceans through the Fram Strait. We show that the export of dissolved silicon here is controlled by the availability of nitrate which is influenced by denitrification on Arctic shelves. We suggest that any future changes in the river inputs of silica and changes in denitrification due to climate change will impact the amount of silicon exported, with impacts on Atlantic algal productivity and ecology.
Emily J. Zakem, Barbara Bayer, Wei Qin, Alyson E. Santoro, Yao Zhang, and Naomi M. Levine
Biogeosciences, 19, 5401–5418, https://doi.org/10.5194/bg-19-5401-2022, https://doi.org/10.5194/bg-19-5401-2022, 2022
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We use a microbial ecosystem model to quantitatively explain the mechanisms controlling observed relative abundances and nitrification rates of ammonia- and nitrite-oxidizing microorganisms in the ocean. We also estimate how much global carbon fixation can be associated with chemoautotrophic nitrification. Our results improve our understanding of the controls on nitrification, laying the groundwork for more accurate predictions in global climate models.
Zuozhu Wen, Thomas J. Browning, Rongbo Dai, Wenwei Wu, Weiying Li, Xiaohua Hu, Wenfang Lin, Lifang Wang, Xin Liu, Zhimian Cao, Haizheng Hong, and Dalin Shi
Biogeosciences, 19, 5237–5250, https://doi.org/10.5194/bg-19-5237-2022, https://doi.org/10.5194/bg-19-5237-2022, 2022
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Fe and P are key factors controlling the biogeography and activity of marine N2-fixing microorganisms. We found lower abundance and activity of N2 fixers in the northern South China Sea than around the western boundary of the North Pacific, and N2 fixation rates switched from Fe–P co-limitation to P limitation. We hypothesize the Fe supply rates and Fe utilization strategies of each N2 fixer are important in regulating spatial variability in community structure across the study area.
Claudia Eisenring, Sophy E. Oliver, Samar Khatiwala, and Gregory F. de Souza
Biogeosciences, 19, 5079–5106, https://doi.org/10.5194/bg-19-5079-2022, https://doi.org/10.5194/bg-19-5079-2022, 2022
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Given the sparsity of observational constraints on micronutrients such as zinc (Zn), we assess the sensitivities of a framework for objective parameter optimisation in an oceanic Zn cycling model. Our ensemble of optimisations towards synthetic data with varying kinds of uncertainty shows that deficiencies related to model complexity and the choice of the misfit function generally have a greater impact on the retrieval of model Zn uptake behaviour than does the limitation of data coverage.
Yoshikazu Sasai, Sherwood Lan Smith, Eko Siswanto, Hideharu Sasaki, and Masami Nonaka
Biogeosciences, 19, 4865–4882, https://doi.org/10.5194/bg-19-4865-2022, https://doi.org/10.5194/bg-19-4865-2022, 2022
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We have investigated the adaptive response of phytoplankton growth to changing light, nutrients, and temperature over the North Pacific using two physical-biological models. We compare modeled chlorophyll and primary production from an inflexible control model (InFlexPFT), which assumes fixed carbon (C):nitrogen (N):chlorophyll (Chl) ratios, to a recently developed flexible phytoplankton functional type model (FlexPFT), which incorporates photoacclimation and variable C:N:Chl ratios.
Jens Terhaar, Thomas L. Frölicher, and Fortunat Joos
Biogeosciences, 19, 4431–4457, https://doi.org/10.5194/bg-19-4431-2022, https://doi.org/10.5194/bg-19-4431-2022, 2022
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Estimates of the ocean sink of anthropogenic carbon vary across various approaches. We show that the global ocean carbon sink can be estimated by three parameters, two of which approximate the ocean ventilation in the Southern Ocean and the North Atlantic, and one of which approximates the chemical capacity of the ocean to take up carbon. With observations of these parameters, we estimate that the global ocean carbon sink is 10 % larger than previously assumed, and we cut uncertainties in half.
Natasha René van Horsten, Hélène Planquette, Géraldine Sarthou, Thomas James Ryan-Keogh, Nolwenn Lemaitre, Thato Nicholas Mtshali, Alakendra Roychoudhury, and Eva Bucciarelli
Biogeosciences, 19, 3209–3224, https://doi.org/10.5194/bg-19-3209-2022, https://doi.org/10.5194/bg-19-3209-2022, 2022
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The remineralisation proxy, barite, was measured along 30°E in the southern Indian Ocean during early austral winter. To our knowledge this is the first reported Southern Ocean winter study. Concentrations throughout the water column were comparable to observations during spring to autumn. By linking satellite primary production to this proxy a possible annual timescale is proposed. These findings also suggest possible carbon remineralisation from satellite data on a basin scale.
Zhibo Shao and Ya-Wei Luo
Biogeosciences, 19, 2939–2952, https://doi.org/10.5194/bg-19-2939-2022, https://doi.org/10.5194/bg-19-2939-2022, 2022
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Non-cyanobacterial diazotrophs (NCDs) may be an important player in fixing N2 in the ocean. By conducting meta-analyses, we found that a representative marine NCD phylotype, Gamma A, tends to inhabit ocean environments with high productivity, low iron concentration and high light intensity. It also appears to be more abundant inside cyclonic eddies. Our study suggests a niche differentiation of NCDs from cyanobacterial diazotrophs as the latter prefers low-productivity and high-iron oceans.
Coraline Leseurre, Claire Lo Monaco, Gilles Reverdin, Nicolas Metzl, Jonathan Fin, Claude Mignon, and Léa Benito
Biogeosciences, 19, 2599–2625, https://doi.org/10.5194/bg-19-2599-2022, https://doi.org/10.5194/bg-19-2599-2022, 2022
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Decadal trends of fugacity of CO2 (fCO2), total alkalinity (AT), total carbon (CT) and pH in surface waters are investigated in different domains of the southern Indian Ocean (45°S–57°S) from ongoing and station observations regularly conducted in summer over the period 1998–2019. The fCO2 increase and pH decrease are mainly driven by anthropogenic CO2 estimated just below the summer mixed layer, as well as by a warming south of the polar front or in the fertilized waters near Kerguelen Island.
Priscilla Le Mézo, Jérôme Guiet, Kim Scherrer, Daniele Bianchi, and Eric Galbraith
Biogeosciences, 19, 2537–2555, https://doi.org/10.5194/bg-19-2537-2022, https://doi.org/10.5194/bg-19-2537-2022, 2022
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This study quantifies the role of commercially targeted fish biomass in the cycling of three important nutrients (N, P, and Fe), relative to nutrients otherwise available in water and to nutrients required by primary producers, and the impact of fishing. We use a model of commercially targeted fish biomass constrained by fish catch and stock assessment data to assess the contributions of fish at the global scale, at the time of the global peak catch and prior to industrial fishing.
Cited articles
Bell, P. R. F., Elmetri, I., and Uwins, P.: Nitrogen fixation by Trichodesmium spp. in the central and northern Great Barrier Reef lagoon: relative importance of the fixed-nitrogen load, Mar. Ecol.-Prog. Ser., 186, 119–126, 1999.
Brown, M. T., Landing, W. M., and Measures, C. I.: Dissolved and particulate Fe in the western and central North Pacific: Results from the 2002 IOC cruise, Geochem. Geophy. Geosy., 6, Q10001, https://doi.org/https://doi.org/10.1029/2004GC000893, 2005.
Capone, D. G., Zehr, P. J., Paerl, H. W., Bergman, B., and Carpenter, E. J.: Trichodesmium, a globally significant marine cyanobacterium, Science, 276, 1221–1229, 1997.
Chen, C. T. A.: Distributions of nutrients in the East China Sea and the South China Sea connection, J. Oceanogr., 64, 737–751, 2008.
Chen, Y. L. L., Chen, H. Y., Tuo, S. H., and Ohki, K.: Seasonal dynamics of new production from Trichodesmium N2 fixation and nitrate uptake in the upstream Kuroshio and South China Sea basin, Limnol. Oceanogr., 53, 1705–1721, 2008.
Chen, Y. L. L., Chen, H. Y., Lin, Y. H., Yong, T. C., Taniuchi, Y., and Tuo, S. H.: The relative contributions of unicellular and filamentous diazotrophs to N2 fixation in the South China Sea and the upstream Kuroshio, Deep-Sea Res. Pt. I, 85, 56–71, 2014.
Dabundo, R., Lehmann, M. F., Treibergs, L., Tobias, C. R., and Altabet, M. A.: The contamination of commercial 15N2 gas stocks with 15N-labeled nitrate and ammonium and consequences for nitrogen fixation measurements, PLoS one, 9, e110335, https://doi.org/10.1371/journal.pone.0110335, 2014.
Dupouy, C., Benielli-Gary, D., Neveux, J., Dandonneau, Y., and Westberry, T. K.: An algorithm for detecting Trichodesmium surface blooms in the South Western Tropical Pacific, Biogeosciences, 8, 3631–3647, https://doi.org/10.5194/bg-8-3631-2011, 2011.
Großkopf, T., Mohr, W., Baustian, T., Schunck, H., Gill, D., Kuypers, M. M. M., Lavik, G., Schmitz, R. A., Wallace, D. W. R., and LaRoche, J.: Doubling of marine dinitrogen-fixation rate based on direct measurements, Nature, 488, 361–364, 2012.
Hasegawa, D., Lewis, M. R., and Gangopadhyay, A.: How islands cause phytoplankton to bloom in their wake, Geophys. Res. Lett., 36, L20605, https://doi.org/10.1029/2009GL039743, 2009.
Hashihama, F., Furuya, K., Kitajima, S., Takeda, S., Takemura, T., and Kanda, J.: Macro-scale exhaustion of surface phosphate by dinitrogen fixation in the western North Pacific, Geophys. Res. Lett., 36, L03610, https://doi.org/10.1029/2008GL036866, 2009.
Isobe, A.: Recent advances in ocean-circulation research on the Yellow Sea and East China Sea shelves, J. Oceanogr., 64, 569–584, 2008.
Itoh, S., Yasuda, I., Nishikawa, H., Sasaki, H., and Sasai, Y.: Transport and environmental temperature variability of eggs and larvae of the Japanese anchovy (Engraulis japonicus) and Japanese sardine (Sardinops melanostictus) in the western North Pacific estimated via numerical particle-tracking experiments, Fish. Oceanogr., 18, 118–133, 2009.
Jickells, T. D., An, Z. S., Andersen, K. K., Baker, A. R., Bergametti, G., Brooks, N., Cao, J. J., Boyd, P. W., Duce, R. A., Hunter, K. A., Kawahata, H., Kubilay, N., LaRoche, J., Liss, P. S., Mahowald, N., Prospero, J. M., Ridgwell, A. J., Tegen, I., and Torres, R.: Global iron connections between desert dust, ocean biogeochemistry, and climate, Science, 308, 67–71, 2005.
Johnson, K. S., Chavez, F. P., and Friederich, G. E.: Continental-shelf sediment as a primary source of iron for coastal phytoplankton, Nature, 398, 697–700, 1999.
Johnson, K. S., Boyle, E., Bruland, K., Coale, K., Measures, C., Moffett, J., Aguilar-Islas, A., Barbeau, K., Bergquist, B., Bowie, A., Buck, K., Cai, Y., Chase, Z., Cullen, J., Doi, T., Elrod, V., Fitzwater, S., Gordon, M., King, A., Laan, P., Laglera-Baquer, L., Landing, W., Lohan, M., Mendez, J., Milne, A., Obata, H., Ossiander, L., Plant, J., Sarthou, G., Sedwick, P., Smith, G.J., Sohst, B., Tanner, S., Van den Berg, S., and Wu, J.: The SAFe iron intercomparison cruise: an international collaboration to develop dissolved iron in seawater standards, Eos, 88, 131–132, 2007.
Kodama, T., Furuya, K., Hashihama, F., Takeda, S., and Kanda, J.: Occurrence of rain-origin nitrate patches at the nutrient-depleted surface in the East China Sea and the Philippine Sea during summer, J. Geophys. Res., 116, C08003, https://doi.org/10.1029/2010JC006814, 2011.
Kustka, A., Sañudo-Wilhelmy, S., Carpenter, E. J., Capone, D. G., and Raven, J. A.: A revised estimate of the iron use efficiency of nitrogen fixation, with special reference to the marine cyanobacterium Trichodesmium spp. (Cyanophyta), J. Phycol., 39, 12–25, 2003.
Lin, I.-I., Hu, C., Li, Y.-H., Ho, T.-Y., Fischer, T. P., Wong, G. T. F., Wu, J., Huang, C.-W., Chu, D. A., Ko, D. S., and Chen, J.-P.: Fertilization potential of volcanic dust in the low-nutrient low-chlorophyll western North Pacific subtropical gyre: Satellite evidence and laboratory study, Global Biogeochem. Cy., 25, GB1006, https://doi.org/10.1029/2009GB003758, 2011.
Liu, X., Furuya, K., Shiozaki, T., Masuda, T., Kodama, T., Sato, M., Kaneko, H., Nagasawa, M., and Yasuda, I.: Variability in nitrogen sources for new production in the vicinity of the shelf edge of the East China Sea in summer, Cont. Shelf Res., 61-62, 23–30, 2013.
Mahaffey, C., Michaels, A. F., and Capone, D. G.: The conundrum of marine N2 fixation, Am. J. Sci., 305, 546–595, 2005.
Mahowald, N. M., Engelstaedter, S., Luo, C., Sealy, A., Artaxo, P., Benitez-Nelson, C., Bonnet, S., Chen, Y., Chuang, P. Y., Cohen, D. D., Dulac, F., Herut, B., Johansen, A. M., Kubilay, N., Losno, R., Maenhaut, W., Paytan, A., Prospero, J. M., Shank, L. M., and Siefert, R. L.: Atmospheric iron deposition: Global distribution, variability, and human perturbations, Annu. Rev. Mar. Sci., 1, 245–278, 2009.
Marumo, R. and Asaoka, O.: Trichodesmium in the East China Sea 1. Distribution of Trichodesmium thiebautii GOMONT during 1961–1967, J. Oceanogr. Soc. Japan, 30, 298–303, 1974.
Mather, R. L., Reynolds, S. E., Wolff, G. A., Williams, R. G., Torres-Valdes, S., Woodward, E. M. S., Landolfi, A., Pan, X., Sanders, R., and Achterberg, E. P.: Phosphorus cycling in the North and South Atlantic Ocean subtropical gyres, Nat. Geosci., 1, 439–443, 2008.
Matsuno, T., Lee, J. S., Shimizu, M., Kim, S. H., and Pang, I. C.: Measurements of the turbulent energy dissipation rate ϵ and an evaluation of the dispersion process of the Changjiang Diluted Water in the East China Sea, J. Geophys. Res., 111, C11S09, https://doi.org/10.1029/2005JC003196, 2006.
McGowan, J. A.: Oceanic biogeography of the Pacific, in: The Micropaleontology of Oceans, Cambridge University Press, Cambridge, UK, 3–74, 1971.
McKinna, L. I. W., Furnas, M. J., and Ridd, P. V.: A simple, binary classification algorithm for detection of Trichodesmium spp. within the Great Barrier Reef using MODIS imagery, Limnol. Oceanogr.-Meth., 9, 50–66, 2011.
Miyazawa, Y., Zhang, R., Guo, X., Tamura, H., Ambe, D., Lee, J. S., Okuno, A., Yoshinari, H., Setou, T., and Komatsu, K.: Water mass variability in the western North Pacific detected in a 15-year eddy resolving ocean reanalysis, J. Oceanogr., 65, 737–756, 2009.
Mohr, W., Großkopf, T., Wallace, D. W. R., and LaRoche, J.: Methodological underestimation of oceanic nitrogen fixation rate, PLoS one, 5, e12583, https://doi.org/10.1371/journal.pone.0012583, 2010.
Montoya, J. P., Voss, M., Kähler, P., and Capone, D. G.: A simple, high-precision, high-sensitivity tracer assay for N2 fixation, Appl. Environ. Microb., 62, 986–993, 1996.
Moore, C. M., Mills, M. M., Langlois, R., Milne, A., Achterberg, E. P., LaRoche, J., and Geider, R. J.: Relative influence of nitrogen and phosphorus availability on phytoplankton physiology and productivity in the oligotrophic sub-tropical North Atlantic Ocean, Limnol. Oceanogr., 53, 291–305, 2008.
Moore, C. M., Mills, M. M., Achterberg, E. P., Geider, R. J., LaRoche, J., Lucas, M. I., McDonagh, E. L., Pan, X., Poulton, A. J., Rijkenberg, M. J. A., Suggett, D. J., Ussher, S. J., and Woodward, E. M. S.: Large-scale distribution of Atlantic nitrogen fixation controlled by iron availability, Nat. Geosci., 2, 867–871, 2009.
Moore, C. M., Mills, M. M., Arrigo, K. R., Berman-Frank, I., Bopp, L., Boyd, P. W., Galbraith, E. D., Geider, R. J., Guieu, C., Jaccard, S. L., Jickells, T. D., LaRoche, J., Lenton, T. M., Mahowald, N. M., Marañon, E., Marinov, I., Moore, J. K., Nakatsuka, T., Oschlies, A., Saito, M. A., Thingstad, T. F., Tsuda, A., and Ulloa, O.: Processes and patterns of oceanic nutrient limitation, Nat. Geosci., 6, 701–710, 2013.
Obata, H., Karatani, H., and Nakayama, E.: Automated determination of iron in seawater by chelating resin concentration and chemiluminescence detection, Anal. Chem., 65, 1524–1528, 1993.
Obata, H., Karatani, H., Matsui, M., and Nakayama, E.: Fundamental studies for chemical speciation of iron in seawater with an improved analytical method, Mar. Chem., 56, 97–106, 1997.
Saito, M. A., Bertrand, E. M., Dutkiewicz, S., Bulygin, V. V., Moran, D. M., Monteiro, F. M., Follows, M. J., Valois, F. W., and Waterbury, J. B.: Iron conservation by reduction of metalloenzyme inventories in the marine diazotroph Crocosphaera watsonii, P. Natl. Acad. Sci. USA, 108, 2184–2189, 2011.
Shiozaki, T., Furuya, K., Kodama, T., and Takeda, S.: Contribution of N2 fixation to new production in the western North Pacific Ocean along 155° E, Mar. Ecol.-Prog. Ser., 377, 19–32, 2009.
Shiozaki, T., Furuya, K., Kodama, T., Kitajima, S., Takeda, S., Takemura, T., and Kanda, J.: New estimation of N2 fixation in the western and central Pacific Ocean and its marginal seas, Global Biogeochem. Cy., 24, GB1015, https://doi.org/10.1029/2009GB003620, 2010.
Shiozaki, T., Furuya, K., Kurotori, H., Kodama, T., Takeda, S., Endoh, T., Yoshikawa, Y., Ishizaka, J., and Matsuno, T.: Imbalance between vertical nitrate flux and nitrate assimilation on a continental shelf: Implications of nitrification, J. Geophys. Res., 116, C10031, https://doi.org/10.1029/2010JC006934, 2011.
Shiozaki, T., Kodama, T., Kitajima, S., Sato, M., and Furuya, K.: Advective transport of diazotrophs and importance of their nitrogen fixation on new and primary production in the western Pacific warm pool, Limnol. Oceanogr., 58, 49–60, 2013.
Shiozaki, T., Chen, Y. L. L., Lin, Y. H., Taniuchi, Y., Sheu, D. S., Furuya, K., and Chen, H. Y.: Seasonal variations of unicellular diazotroph groups A and B, and Trichodesmium in the northern South China Sea and neighboring upstream Kuroshio Current, Cont. Shelf Res., 80, 20–31, 2014a.
Shiozaki, T., Ijichi, M., Kodama, T., Takeda, S., and Furuya, K.: Heterotrophic bacteria as major nitrogen fixers in the euphotic zone of the Indian Ocean, Global Biogeochem. Cy., 28, 1096–1110, 2014b.
Shiozaki, T., Kodama, T., and Furuya, K.: Large-scale impact of the island mass effect through nitrogen fixation in the western South Pacific Ocean, Geophys. Res. Lett., 41, 2907–2913, 2014c.
Wilson, C. and Qiu, X.: Global distribution of summer chlorophyll blooms in the oligotrophic gyres, Progr. Oceanogr., 78, 107–134, 2008.
Zhang, R., Chen, M., Cao, J., Ma, Q., Yang, J., and Qiu, Y.: Nitrogen fixation in the East China Sea and southern Yellow Sea during summer 2006, Mar. Ecol.-Prog. Ser., 447, 77–86, 2012.
Short summary
The high abundance of Trichodesmium and active nitrogen fixation in the Kuroshio were not explained by the nutrient (nitrate, phosphate, and iron) distribution. We observed a Trichodesmium bloom and high nitrogen fixation near islands situated along the Kuroshio. Numerical particle-tracking experiments simulated the transportation of water around the Ryukyu Islands to the Kuroshio. Our results indicate that Trichodesmium growing around the Ryukyu Islands could be advected into the Kuroshio.
The high abundance of Trichodesmium and active nitrogen fixation in the Kuroshio were not...
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