Articles | Volume 14, issue 11
https://doi.org/10.5194/bg-14-2877-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-14-2877-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
16 Jun 2017
Research article |
| 16 Jun 2017
Biogeochemical versus ecological consequences of modeled ocean physics
Department for Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
School of Oceanography, University of Washington, Seattle, WA, USA
Stephanie Dutkiewicz
Department for Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
Oliver Jahn
Department for Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
Christopher Hill
Department for Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
Patrick Heimbach
Department for Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
Institute for Computational Engineering and Sciences and Jackson School of Geosciences, The University of Texas at Austin, Austin, TX, USA
Michael J. Follows
Department for Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
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Alexandra E. Jones-Kellett and Michael J. Follows
Ocean Sci., 21, 1141–1166, https://doi.org/10.5194/os-21-1141-2025, https://doi.org/10.5194/os-21-1141-2025, 2025
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Eddies are rotating ocean vortices up to hundreds of kilometers in diameter that stimulate phytoplankton blooms. We used satellite data and simulations of currents to examine the effect of eddy trapping strength on phytoplankton concentration in the open North Pacific Ocean. Coherent eddies trap phytoplankton, while "leaky" ones have lower concentrations because they mix with surrounding waters. However, contrary to previous theory, eddy-trapped blooms are more prominent in southern latitudes.
Leonhard Lücken, Michael J. Follows, Jason G. Bragg, and Sinikka T. Lennartz
EGUsphere, https://doi.org/10.5194/egusphere-2025-2227, https://doi.org/10.5194/egusphere-2025-2227, 2025
This preprint is open for discussion and under review for Geoscientific Model Development (GMD).
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The Microbial Community Model (MCoM) is a flexible biogeochemical modeling framework which resolves a rich set of interactions between photosynthetic and heterotrophic microbes, including cross-feeding, metabolite exchange, and nutrient recycling. As such, it allows to assess community-level effects on elemental turnover emerging from microbial interactions. Its scalability allows to represent both simple pairwise interactions and large, diverse communities.
Alexandra E. Jones-Kellett and Michael J. Follows
Earth Syst. Sci. Data, 16, 1475–1501, https://doi.org/10.5194/essd-16-1475-2024, https://doi.org/10.5194/essd-16-1475-2024, 2024
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Ocean eddies can limit horizontal mixing, potentially isolating phytoplankton populations and affecting their concentration. We used two decades of satellite data and computer simulations to identify and track eddy-trapping boundaries in the Pacific Ocean for application in phytoplankton research. Although some eddies trap water masses for months, many continuously mix with surrounding waters. A case study shows how eddy trapping can enhance the signature of a phytoplankton bloom.
Siyu Zhu, Peipei Wu, Siyi Zhang, Oliver Jahn, Shu Li, and Yanxu Zhang
Geosci. Model Dev., 16, 5915–5929, https://doi.org/10.5194/gmd-16-5915-2023, https://doi.org/10.5194/gmd-16-5915-2023, 2023
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In this study, we estimate the global biogeochemical cycling of Hg in a state-of-the-art physical-ecosystem ocean model (high-resolution-MITgcm/Hg), providing a more accurate portrayal of surface Hg concentrations in estuarine and coastal areas, strong western boundary flow and upwelling areas, and concentration diffusion as vortex shapes. The high-resolution model can help us better predict the transport and fate of Hg in the ocean and its impact on the global Hg cycle.
Stephanie Dutkiewicz, Pedro Cermeno, Oliver Jahn, Michael J. Follows, Anna E. Hickman, Darcy A. A. Taniguchi, and Ben A. Ward
Biogeosciences, 17, 609–634, https://doi.org/10.5194/bg-17-609-2020, https://doi.org/10.5194/bg-17-609-2020, 2020
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Phytoplankton are an essential component of the marine food web and earth's carbon cycle. We use observations, ecological theory and a unique trait-based ecosystem model to explain controls on patterns of marine phytoplankton biodiversity. We find that different dimensions of diversity (size classes, biogeochemical functional groups, thermal norms) are controlled by a disparate combination of mechanisms. This may explain why previous studies of phytoplankton diversity had conflicting results.
Stephanie Dutkiewicz, Anna E. Hickman, and Oliver Jahn
Biogeosciences, 15, 613–630, https://doi.org/10.5194/bg-15-613-2018, https://doi.org/10.5194/bg-15-613-2018, 2018
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This study provides a demonstration that a biogeochemical/ecosystem/optical computer model which explicitly captures how light is radiated at the surface of the ocean and can be used as a laboratory to explore products (such as Chl a) that are derived from satellite measurements of ocean colour. It explores uncertainties that arise from data input used to derive the algorithms for the products, and issues arising from the interplay between optically important constituents in the ocean.
Stephen M. Griffies, Gokhan Danabasoglu, Paul J. Durack, Alistair J. Adcroft, V. Balaji, Claus W. Böning, Eric P. Chassignet, Enrique Curchitser, Julie Deshayes, Helge Drange, Baylor Fox-Kemper, Peter J. Gleckler, Jonathan M. Gregory, Helmuth Haak, Robert W. Hallberg, Patrick Heimbach, Helene T. Hewitt, David M. Holland, Tatiana Ilyina, Johann H. Jungclaus, Yoshiki Komuro, John P. Krasting, William G. Large, Simon J. Marsland, Simona Masina, Trevor J. McDougall, A. J. George Nurser, James C. Orr, Anna Pirani, Fangli Qiao, Ronald J. Stouffer, Karl E. Taylor, Anne Marie Treguier, Hiroyuki Tsujino, Petteri Uotila, Maria Valdivieso, Qiang Wang, Michael Winton, and Stephen G. Yeager
Geosci. Model Dev., 9, 3231–3296, https://doi.org/10.5194/gmd-9-3231-2016, https://doi.org/10.5194/gmd-9-3231-2016, 2016
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The Ocean Model Intercomparison Project (OMIP) aims to provide a framework for evaluating, understanding, and improving the ocean and sea-ice components of global climate and earth system models contributing to the Coupled Model Intercomparison Project Phase 6 (CMIP6). This document defines OMIP and details a protocol both for simulating global ocean/sea-ice models and for analysing their output.
D. N. Goldberg, P. Heimbach, I. Joughin, and B. Smith
The Cryosphere, 9, 2429–2446, https://doi.org/10.5194/tc-9-2429-2015, https://doi.org/10.5194/tc-9-2429-2015, 2015
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We calibrate a time-dependent ice model through optimal fit to transient observations of surface elevation and velocity, a novel procedure in glaciology and in particular for an ice stream with a dynamic grounding line. We show this procedure gives a level of confidence in model projections that cannot be achieved through more commonly used glaciological data assimilation methods. We show that Smith Glacier is in a state of retreat regardless of climatic forcing for the next several decades.
G. Forget, J.-M. Campin, P. Heimbach, C. N. Hill, R. M. Ponte, and C. Wunsch
Geosci. Model Dev., 8, 3071–3104, https://doi.org/10.5194/gmd-8-3071-2015, https://doi.org/10.5194/gmd-8-3071-2015, 2015
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The ECCO v4 non-linear inverse modeling framework and its reference solution are made publicly available. The inverse estimate of ocean physics and atmospheric forcing yields a dynamically consistent and global state estimate without unidentified sources of heat and salt that closely fits in situ and satellite data. Any user can reproduce it accurately. Parametric and external model uncertainties are of comparable magnitudes and generally exceed structural model uncertainties.
S. Dutkiewicz, A. E. Hickman, O. Jahn, W. W. Gregg, C. B. Mouw, and M. J. Follows
Biogeosciences, 12, 4447–4481, https://doi.org/10.5194/bg-12-4447-2015, https://doi.org/10.5194/bg-12-4447-2015, 2015
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A numerical model is presented that explicitly includes spectral
irradiance and optically important water constituents. The model captures 3-D
biogeochemical, ecosystem, and optical observations, including surface
reflectance analogous to ocean colour satellite observations. Sensitivity
experiments demonstrate the relative importance of each of the water
constituents, and the feedbacks between the light field, fitness of
phytoplankton types, and the biogeochemistry of the ocean.
S. Dutkiewicz, B. A. Ward, J. R. Scott, and M. J. Follows
Biogeosciences, 11, 5445–5461, https://doi.org/10.5194/bg-11-5445-2014, https://doi.org/10.5194/bg-11-5445-2014, 2014
D. Talmy, J. Blackford, N. J. Hardman-Mountford, L. Polimene, M. J. Follows, and R. J. Geider
Biogeosciences, 11, 4881–4895, https://doi.org/10.5194/bg-11-4881-2014, https://doi.org/10.5194/bg-11-4881-2014, 2014
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Roxane Tzortzis, Andrea M. Doglioli, Monique Messié, Stéphanie Barrillon, Anne A. Petrenko, Lloyd Izard, Yuan Zhao, Francesco d'Ovidio, Franck Dumas, and Gérald Gregori
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Biogeosciences, 20, 3273–3299, https://doi.org/10.5194/bg-20-3273-2023, https://doi.org/10.5194/bg-20-3273-2023, 2023
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Biogeosciences, 20, 2693–2706, https://doi.org/10.5194/bg-20-2693-2023, https://doi.org/10.5194/bg-20-2693-2023, 2023
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Biogeosciences, 20, 1741–1758, https://doi.org/10.5194/bg-20-1741-2023, https://doi.org/10.5194/bg-20-1741-2023, 2023
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Phytoplankton vary in abundance in the ocean over large regions and with the seasons but also because of small-scale heterogeneities in surface temperature, called fronts. Here, using satellite imagery, we found that fronts enhance phytoplankton much more where it is already growing well, but despite large local increases the enhancement for the region is modest (5 %). We also found that blooms start 1 to 2 weeks earlier over fronts. These effects may have implications for ecosystems.
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Biogeosciences, 20, 1089–1111, https://doi.org/10.5194/bg-20-1089-2023, https://doi.org/10.5194/bg-20-1089-2023, 2023
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The impact of assimilating different dataset combinations on regional to global-scale C budgets is explored with the ORCHIDEE model. Assimilating simultaneously multiple datasets is preferable to optimize the values of the model parameters and avoid model overfitting. The challenges in constraining soil C disequilibrium using atmospheric CO2 data are highlighted for an accurate prediction of the land sink distribution.
Matti Kämäräinen, Juha-Pekka Tuovinen, Markku Kulmala, Ivan Mammarella, Juha Aalto, Henriikka Vekuri, Annalea Lohila, and Anna Lintunen
Biogeosciences, 20, 897–909, https://doi.org/10.5194/bg-20-897-2023, https://doi.org/10.5194/bg-20-897-2023, 2023
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In this study, we introduce a new method for modeling the exchange of carbon between the atmosphere and a study site located in a boreal forest in southern Finland. Our method yields more accurate results than previous approaches in this context. Accurately estimating carbon exchange is crucial for gaining a better understanding of the role of forests in regulating atmospheric carbon and addressing climate change.
Stéphanie Barrillon, Robin Fuchs, Anne A. Petrenko, Caroline Comby, Anthony Bosse, Christophe Yohia, Jean-Luc Fuda, Nagib Bhairy, Frédéric Cyr, Andrea M. Doglioli, Gérald Grégori, Roxane Tzortzis, Francesco d'Ovidio, and Melilotus Thyssen
Biogeosciences, 20, 141–161, https://doi.org/10.5194/bg-20-141-2023, https://doi.org/10.5194/bg-20-141-2023, 2023
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Extreme weather events can have a major impact on ocean physics and biogeochemistry, but their study is challenging. In May 2019, an intense storm occurred in the north-western Mediterranean Sea, during which in situ multi-platform measurements were performed. The results show a strong impact on the surface phytoplankton, highlighting the need for high-resolution measurements coupling physics and biology during these violent events that may become more common in the context of global change.
Darren C. McKee, Scott C. Doney, Alice Della Penna, Emmanuel S. Boss, Peter Gaube, Michael J. Behrenfeld, and David M. Glover
Biogeosciences, 19, 5927–5952, https://doi.org/10.5194/bg-19-5927-2022, https://doi.org/10.5194/bg-19-5927-2022, 2022
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As phytoplankton (small, drifting photosynthetic organisms) drift with ocean currents, biomass accumulation rates should be evaluated in a Lagrangian (observer moves with a fluid parcel) as opposed to an Eulerian (observer is stationary) framework. Here, we use profiling floats and surface drifters combined with satellite data to analyse time and length scales of chlorophyll concentrations (a proxy for biomass) and of velocity to quantify how phytoplankton variability is related to water motion.
Karo Michaelian and Aleksandar Simeonov
Biogeosciences, 19, 4029–4034, https://doi.org/10.5194/bg-19-4029-2022, https://doi.org/10.5194/bg-19-4029-2022, 2022
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We reply to Lars Björn's critique of our article concerning the importance of photon dissipation to the origin and evolution of the biosphere. Björn doubts our assertion that organic pigments, ecosystems, and the biosphere arose out of a non-equilibrium thermodynamic imperative to increase global photon dissipation. He shows that the albedo of some non-living material is less than that of living material. We point out, however, that photon dissipation involves other factors besides albedo.
Reint Fischer, Delphine Lobelle, Merel Kooi, Albert Koelmans, Victor Onink, Charlotte Laufkötter, Linda Amaral-Zettler, Andrew Yool, and Erik van Sebille
Biogeosciences, 19, 2211–2234, https://doi.org/10.5194/bg-19-2211-2022, https://doi.org/10.5194/bg-19-2211-2022, 2022
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Since current estimates show that only about 1 % of the all plastic that enters the ocean is floating at the surface, we look at subsurface processes that can cause vertical movement of (micro)plastic. We investigate how modelled algal attachment and the ocean's vertical movement can cause particles to sink and oscillate in the open ocean. Particles can sink to depths of > 5000 m in regions with high wind intensity and mainly remain close to the surface with low winds and biological activity.
Michelle Viswanathan, Tobias K. D. Weber, Sebastian Gayler, Juliane Mai, and Thilo Streck
Biogeosciences, 19, 2187–2209, https://doi.org/10.5194/bg-19-2187-2022, https://doi.org/10.5194/bg-19-2187-2022, 2022
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We analysed the evolution of model parameter uncertainty and prediction error as we updated parameters of a maize phenology model based on yearly observations, by sequentially applying Bayesian calibration. Although parameter uncertainty was reduced, prediction quality deteriorated when calibration and prediction data were from different maize ripening groups or temperature conditions. The study highlights that Bayesian methods should account for model limitations and inherent data structures.
Jessica Kolbusz, Tim Langlois, Charitha Pattiaratchi, and Simon de Lestang
Biogeosciences, 19, 517–539, https://doi.org/10.5194/bg-19-517-2022, https://doi.org/10.5194/bg-19-517-2022, 2022
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Western rock lobster larvae spend up to 11 months in offshore waters before ocean currents and their ability to swim transport them back to the coast. In 2008, there was a reduction in the number of puerulus (larvae) settling into the fishery. We use an oceanographic model to see how the environment may have contributed to the reduction. Our results show that a combination of effects from local currents and a widespread quiet period in the ocean off WA likely led to less puerulus settlement.
Rémy Asselot, Frank Lunkeit, Philip B. Holden, and Inga Hense
Biogeosciences, 19, 223–239, https://doi.org/10.5194/bg-19-223-2022, https://doi.org/10.5194/bg-19-223-2022, 2022
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Previous studies show that phytoplankton light absorption can warm the atmosphere, but how this warming occurs is still unknown. We compare the importance of air–sea heat versus CO2 flux in the phytoplankton-induced atmospheric warming and determine the main driver. To shed light on this research question, we conduct simulations with a climate model of intermediate complexity. We show that phytoplankton mainly warms the atmosphere by increasing the air–sea CO2 flux.
Roxane Tzortzis, Andrea M. Doglioli, Stéphanie Barrillon, Anne A. Petrenko, Francesco d'Ovidio, Lloyd Izard, Melilotus Thyssen, Ananda Pascual, Bàrbara Barceló-Llull, Frédéric Cyr, Marc Tedetti, Nagib Bhairy, Pierre Garreau, Franck Dumas, and Gérald Gregori
Biogeosciences, 18, 6455–6477, https://doi.org/10.5194/bg-18-6455-2021, https://doi.org/10.5194/bg-18-6455-2021, 2021
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This work analyzes an original high-resolution data set collected in the Mediterranean Sea. The major result is the impact of a fine-scale frontal structure on the distribution of phytoplankton groups, in an area of moderate energy with oligotrophic conditions. Our results provide an in situ confirmation of the findings obtained by previous modeling studies and remote sensing about the structuring effect of the fine-scale ocean dynamics on the structure of the phytoplankton community.
Johannes Vogel, Eva Paton, and Valentin Aich
Biogeosciences, 18, 5903–5927, https://doi.org/10.5194/bg-18-5903-2021, https://doi.org/10.5194/bg-18-5903-2021, 2021
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This study investigates extreme ecosystem impacts evoked by temperature and soil moisture in the Mediterranean Basin for the time span 1999–2019 with a specific focus on seasonal variations. The analysis showed that ecosystem vulnerability is caused by several varying combinations of both drivers during the yearly cycle. The approach presented here helps to provide insights on the specific phenological stage of the year in which ecosystem vulnerability to a certain climatic condition occurs.
Mara Freilich, Alexandre Mignot, Glenn Flierl, and Raffaele Ferrari
Biogeosciences, 18, 5595–5607, https://doi.org/10.5194/bg-18-5595-2021, https://doi.org/10.5194/bg-18-5595-2021, 2021
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Observations reveal that in some regions phytoplankton biomass increases during the wintertime when growth conditions are sub-optimal, which has been attributed to a release from grazing during mixed layer deepening. Measurements of grazer populations to support this theory are lacking. We demonstrate that a release from grazing when the winter mixed layer is deepening holds only for certain grazing models, extending the use of phytoplankton observations to make inferences about grazer dynamics.
Shuangling Chen, Mark L. Wells, Rui Xin Huang, Huijie Xue, Jingyuan Xi, and Fei Chai
Biogeosciences, 18, 5539–5554, https://doi.org/10.5194/bg-18-5539-2021, https://doi.org/10.5194/bg-18-5539-2021, 2021
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Subduction transports surface waters to the oceanic interior, which can supply significant amounts of carbon and oxygen to the twilight zone. Using a novel BGC-Argo dataset covering the western North Pacific, we successfully identified the imprints of episodic shallow subduction patches. These subduction patches were observed mainly in spring and summer (70.6 %), and roughly half of them extended below ~ 450 m, injecting carbon- and oxygen-enriched waters into the ocean interior.
Pierre Damien, Julio Sheinbaum, Orens Pasqueron de Fommervault, Julien Jouanno, Lorena Linacre, and Olaf Duteil
Biogeosciences, 18, 4281–4303, https://doi.org/10.5194/bg-18-4281-2021, https://doi.org/10.5194/bg-18-4281-2021, 2021
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The Gulf of Mexico deep waters are relatively poor in phytoplankton biomass due to low levels of nutrients in the upper layers. Using modeling techniques, we find that the long-living anticyclonic Loop Current eddies that are shed episodically from the Yucatan Channel strongly shape the distribution of phytoplankton and, more importantly, stimulate their growth. This results from the contribution of multiple mechanisms of physical–biogeochemical interactions discussed in this study.
Sergey V. Stanichny, Elena A. Kubryakova, and Arseny A. Kubryakov
Biogeosciences, 18, 3173–3188, https://doi.org/10.5194/bg-18-3173-2021, https://doi.org/10.5194/bg-18-3173-2021, 2021
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In this paper, we show that the short-term impact of tropical cyclones can trigger the intense, long-term bloom of coccolithophores, which are major marine calcifiers playing an important role in the balance and fluxes of inorganic carbon in the ocean. In our paper, we describe the evolution of and physical reasons for such an unusual bloom observed in autumn 2005 in the Black Sea on the basis of satellite data.
Fengshan Liu, Ying Chen, Nini Bai, Dengpan Xiao, Huizi Bai, Fulu Tao, and Quansheng Ge
Biogeosciences, 18, 2275–2287, https://doi.org/10.5194/bg-18-2275-2021, https://doi.org/10.5194/bg-18-2275-2021, 2021
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The sowing date is key to the surface biophysical processes in the winter dormancy period. The climate effect of the sowing date shift is therefore very interesting and may contribute to the mitigation of climate change. An earlier sowing date always had a higher LAI but a higher temperature in the dormancy period and a lower temperature in the growth period. The main reason was the relative contributions of the surface albedo and energy partitioning processes.
Peter Aartsma, Johan Asplund, Arvid Odland, Stefanie Reinhardt, and Hans Renssen
Biogeosciences, 18, 1577–1599, https://doi.org/10.5194/bg-18-1577-2021, https://doi.org/10.5194/bg-18-1577-2021, 2021
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In the literature, it is generally assumed that alpine lichen heaths keep their direct environment cool due to their relatively high albedo. However, we reveal that the soil temperature and soil heat flux are higher below lichens than below shrubs during the growing season, despite a lower net radiation for lichens. We also show that the differences in microclimatic conditions between these two vegetation types are more pronounced during warm and sunny days than during cold and cloudy days.
Oleg Sizov, Ekaterina Ezhova, Petr Tsymbarovich, Andrey Soromotin, Nikolay Prihod'ko, Tuukka Petäjä, Sergej Zilitinkevich, Markku Kulmala, Jaana Bäck, and Kajar Köster
Biogeosciences, 18, 207–228, https://doi.org/10.5194/bg-18-207-2021, https://doi.org/10.5194/bg-18-207-2021, 2021
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In changing climate, tundra is expected to turn into shrubs and trees, diminishing reindeer pasture and increasing risks of tick-borne diseases. However, this transition may require a disturbance. Fires in Siberia are increasingly widespread. We studied wildfire dynamics and tundra–forest transition over 60 years in northwest Siberia near the Arctic Circle. Based on satellite data analysis, we found that transition occurs in 40 %–85 % of burned tundra compared to 5 %–15 % in non-disturbed areas.
Kaveh Purkiani, André Paul, Annemiek Vink, Maren Walter, Michael Schulz, and Matthias Haeckel
Biogeosciences, 17, 6527–6544, https://doi.org/10.5194/bg-17-6527-2020, https://doi.org/10.5194/bg-17-6527-2020, 2020
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There has been a steady increase in interest in mining of deep-sea minerals in the eastern Pacific Ocean recently. The ocean state in this region is known to be highly influenced by rotating bodies of water (eddies), some of which can travel long distances in the ocean and impact the deeper layers of the ocean. Better insight into the variability of eddy activity in this region is of great help to mitigate the impact of the benthic ecosystem from future potential deep-sea mining activity.
Jing Yan, Nathaniel A. Bogie, and Teamrat A. Ghezzehei
Biogeosciences, 17, 6377–6392, https://doi.org/10.5194/bg-17-6377-2020, https://doi.org/10.5194/bg-17-6377-2020, 2020
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An uneven supply of water and nutrients in soils often drives how plants behave. We observed that plants extract all their required nutrients from dry soil patches in sufficient quantity, provided adequate water is available elsewhere in the root zone. Roots in nutrient-rich dry patches facilitate the nutrient acquisition by extensive growth, water release, and modifying water retention in their immediate environment. The findings are valuable in managing nutrient losses in agricultural systems.
Onur Kerimoglu, Yoana G. Voynova, Fatemeh Chegini, Holger Brix, Ulrich Callies, Richard Hofmeister, Knut Klingbeil, Corinna Schrum, and Justus E. E. van Beusekom
Biogeosciences, 17, 5097–5127, https://doi.org/10.5194/bg-17-5097-2020, https://doi.org/10.5194/bg-17-5097-2020, 2020
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In this study, using extensive field observations and a numerical model, we analyzed the physical and biogeochemical structure of a coastal system following an extreme flood event. Our results suggest that a number of anomalous observations were driven by a co-occurrence of peculiar meteorological conditions and increased riverine discharges. Our results call for attention to the combined effects of hydrological and meteorological extremes that are anticipated to increase in frequency.
Amandine Erktan, Matthias C. Rillig, Andrea Carminati, Alexandre Jousset, and Stefan Scheu
Biogeosciences, 17, 4961–4980, https://doi.org/10.5194/bg-17-4961-2020, https://doi.org/10.5194/bg-17-4961-2020, 2020
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Soil aggregation is crucial for soil functioning. While the role of bacteria and fungi in soil aggregation is well established, how predators feeding on microbes modify soil aggregation has hardly been investigated. We showed for the first time that protists modify soil aggregation, presumably through changes in the production of bacterial mucilage, and that collembolans reduce soil aggregation, presumably by reducing the abundance of saprotrophic fungi.
Wei Hu, Kotaro Murata, Chunlan Fan, Shu Huang, Hiromi Matsusaki, Pingqing Fu, and Daizhou Zhang
Biogeosciences, 17, 4477–4487, https://doi.org/10.5194/bg-17-4477-2020, https://doi.org/10.5194/bg-17-4477-2020, 2020
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This paper reports the first estimate of the status of bacteria in long-distance-transported Asian dust, demonstrating that airborne dust, which can carry viable and nonviable bacteria on particle surfaces, is an efficient medium for constantly spreading bacteria at regional and even global scales. Such data are essential to better model and understand the roles and activities of bioaerosols in environmental evolution and climate change and the potential risks of bioaerosols to human health.
Inge Grünberg, Evan J. Wilcox, Simon Zwieback, Philip Marsh, and Julia Boike
Biogeosciences, 17, 4261–4279, https://doi.org/10.5194/bg-17-4261-2020, https://doi.org/10.5194/bg-17-4261-2020, 2020
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Based on topsoil temperature data for different vegetation types at a low Arctic tundra site, we found large small-scale variability. Winter temperatures were strongly influenced by vegetation through its effects on snow. Summer temperatures were similar below most vegetation types and not consistently related to late summer permafrost thaw depth. Given that vegetation type defines the relationship between winter and summer soil temperature and thaw depth, it controls permafrost vulnerability.
Long Jiang, Theo Gerkema, Jacco C. Kromkamp, Daphne van der Wal, Pedro Manuel Carrasco De La Cruz, and Karline Soetaert
Biogeosciences, 17, 4135–4152, https://doi.org/10.5194/bg-17-4135-2020, https://doi.org/10.5194/bg-17-4135-2020, 2020
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A seaward increasing chlorophyll-a gradient is observed during the spring bloom in a Dutch tidal bay. Biophysical model runs indicate the roles of bivalve grazing and tidal import in shaping the gradient. Five common spatial phytoplankton patterns are summarized in global estuarine–coastal ecosystems: seaward increasing, seaward decreasing, concave with a chlorophyll maximum, weak spatial gradients, and irregular patterns.
Emil De Borger, Justin Tiano, Ulrike Braeckman, Tom Ysebaert, and Karline Soetaert
Biogeosciences, 17, 1701–1715, https://doi.org/10.5194/bg-17-1701-2020, https://doi.org/10.5194/bg-17-1701-2020, 2020
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By applying a novel technique to quantify organism-induced sediment–water column fluid exchange (bioirrigation), we show that organisms in subtidal (permanently submerged) areas have similar bioirrigation rates as those that inhabit intertidal areas (not permanently submerged), but organisms in the latter irrigate deeper burrows in this study. Our results expand on traditional methods to quantify bioirrigation rates and broaden the pool of field measurements of bioirrigation rates.
Sheila N. Estrada-Allis, Julio Sheinbaum Pardo, Joao M. Azevedo Correia de Souza, Cecilia Elizabeth Enríquez Ortiz, Ismael Mariño Tapia, and Jorge A. Herrera-Silveira
Biogeosciences, 17, 1087–1111, https://doi.org/10.5194/bg-17-1087-2020, https://doi.org/10.5194/bg-17-1087-2020, 2020
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Continental shelves are the most productive areas in the ocean and can have an important impact on the nutrient cycle as well as the climate system. The one in Yucatán is the largest shelf in the Gulf of Mexico. However, its nutrient budget remains unidentifiable. Here we propose not only a general nutrient budget for the Yucatán Shelf but also the physical processes responsible for its pathway modulation through a physical–biogeochemical coupled model of the whole Gulf of Mexico.
Ashley Dubnick, Martin Sharp, Brad Danielson, Alireza Saidi-Mehrabad, and Joel Barker
Biogeosciences, 17, 963–977, https://doi.org/10.5194/bg-17-963-2020, https://doi.org/10.5194/bg-17-963-2020, 2020
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We found that glaciers with basal temperatures near the melting point mobilize more solutes, nutrients, and microbes from the underlying substrate and are more likely to promote in situ biogeochemical activity than glaciers with basal temperatures well below the melting point. The temperature at the base of glaciers is therefore an important control on the biogeochemistry of ice near glacier beds, and, ultimately, the potential solutes, nutrients, and microbes exported from glaciated watersheds.
Audrey Delpech, Anna Conchon, Olivier Titaud, and Patrick Lehodey
Biogeosciences, 17, 833–850, https://doi.org/10.5194/bg-17-833-2020, https://doi.org/10.5194/bg-17-833-2020, 2020
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Micronekton is an important, yet poorly known, component of the trophic chain, which partly contributes to the storage of CO2 in the deep ocean thanks to biomass vertical migrations. In this study, we characterize the ideal sampling regions to estimate the amount of biomass that undergoes theses migrations. We find that observations made in warm, nondynamic and productive waters reduce the error of the estimation by 20 %. This result should likely serve for future in situ network deployment.
Filippos Tagklis, Takamitsu Ito, and Annalisa Bracco
Biogeosciences, 17, 231–244, https://doi.org/10.5194/bg-17-231-2020, https://doi.org/10.5194/bg-17-231-2020, 2020
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Deoxygenation of the oceans is potentially one of the most severe ecosystem stressors resulting from global warming given the high sensitivity of dissolved oxygen to ocean temperatures. Climate models suggest that despite the thermodynamic tendency of the oceans to lose oxygen, certain regions experience significant changes in the biologically driven O2 consumption, resulting in a resistance against deoxygenation. Overturning circulation changes are responsible for such a behavior.
Mohammad Abdul Halim, Han Y. H. Chen, and Sean C. Thomas
Biogeosciences, 16, 4357–4375, https://doi.org/10.5194/bg-16-4357-2019, https://doi.org/10.5194/bg-16-4357-2019, 2019
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Using field data collected over 4 years across a range of stand ages, we investigated how seasonal surface albedo in boreal forest varies with stand age, stand structure, and composition. Our results indicate that successional change in species composition is a key driver of age–related patterns in albedo, with hardwood species associated with higher albedo. The patterns described have important implications for both climate modeling and
climate–smartboreal forest management.
Paul A. Moore, Maxwell C. Lukenbach, Dan K. Thompson, Nick Kettridge, Gustaf Granath, and James M. Waddington
Biogeosciences, 16, 3491–3506, https://doi.org/10.5194/bg-16-3491-2019, https://doi.org/10.5194/bg-16-3491-2019, 2019
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Using very-high-resolution digital elevation models (DEMs), we assessed the basic structure and microtopographic variability of hummock–hollow plots at boreal and hemi-boreal sites primarily in North America. Using a simple model of peatland biogeochemical function, our results suggest that both surface heating and moss productivity may not be adequately resolved in models which only consider idealized hummock–hollow units.
Renee K. Gruber, Ryan J. Lowe, and James L. Falter
Biogeosciences, 16, 1921–1935, https://doi.org/10.5194/bg-16-1921-2019, https://doi.org/10.5194/bg-16-1921-2019, 2019
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Researchers from the University of Western Australia's Oceans Institute are studying large tides (up to 12 m range) that occur in the Kimberley region of Australia. These tides flush coral reefs with water rich in nutrients, which supports the growth of reef organisms. In this paper, we show how tidal cycles and seasons control nutrient availability on reefs. This study is among the first published accounts of reefs and water quality data in the remote and pristine Kimberley region.
Sergey A. Marakushev and Ol'ga V. Belonogova
Biogeosciences, 16, 1817–1828, https://doi.org/10.5194/bg-16-1817-2019, https://doi.org/10.5194/bg-16-1817-2019, 2019
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Among the existing theories of the autotrophic origin of life, CO2 is usually considered to be the carbon source for nascent autotrophic metabolism. However, ancestral carbon used in metabolism may have been derived from CH4 if the outflow of magma fluid to the surface of the Earth consisted mainly of methane. The hydrothermal system model is considered in the form of a phase diagram, which demonstrates the area of redox and P and T conditions favorable to development of primary methanotroph.
Venugopal Thushara, Puthenveettil Narayana Menon Vinayachandran, Adrian J. Matthews, Benjamin G. M. Webber, and Bastien Y. Queste
Biogeosciences, 16, 1447–1468, https://doi.org/10.5194/bg-16-1447-2019, https://doi.org/10.5194/bg-16-1447-2019, 2019
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Chlorophyll distribution in the ocean remains to be explored in detail, despite its climatic significance. Here, we document the vertical structure of chlorophyll in the Bay of Bengal using observations and a model. The shape of chlorophyll profiles, characterized by prominent deep chlorophyll maxima, varies in dynamically different regions, controlled by the monsoonal forcings. The present study provides new insights into the vertical distribution of chlorophyll, rarely observed by satellites.
Soeren Thomsen, Johannes Karstensen, Rainer Kiko, Gerd Krahmann, Marcus Dengler, and Anja Engel
Biogeosciences, 16, 979–998, https://doi.org/10.5194/bg-16-979-2019, https://doi.org/10.5194/bg-16-979-2019, 2019
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Physical and biogeochemical observations from an autonomous underwater vehicle in combination with ship-based measurements are used to investigate remote and local drivers of the oxygen and nutrient variability off Mauritania. Beside the transport of oxygen and nutrients characteristics from remote areas towards Mauritania also local remineralization of organic material close to the seabed seems to be important for the distribution of oxygen and nutrients.
Cited articles
Abbott, M. R. and Letelier, R. M.: Decorrelation scales of chlorophyll as observed from bio-optical drifters in the California Current, Deep-Sea Res. Pt. II, 45, 1639–1667, 1998.
Anderson, T.: Plankton functional type modelling: running before we can walk?, J. Plankton Res., 27, 1073–1081, 2005.
Benitez-Nelson, C. R., Bidigare, R. R., Dickey, T. D., Landry, M. R., Leonard, C. L., Brown, S. L., Nencioli, F., Rii, Y. M., Maiti, K., Becker, J. W., Bibby, T. S., Black, W., Cai, W.-J., Carlson, C. A., Chen, F., Kuwahara, V. S., Mahaffey, C., McAndrew, P. M., Quay, P. D., Rappé, M. S., Selph, K. E., Simmons, M. P., and Yang, E. J.: Mesoscale eddies drive increased silica export in the subtropical Pacific Ocean, Science, 316, 1017–1021, 2007.
Brown, S., Landry, M., Selph, K., Jin Yang, E., Rii, Y., and Bidigare, R.: Diatoms in the desert: Plankton community response to a mesoscale eddy in the subtropical North Pacific, Deep-Sea Res. Pt. II, 55, 1321–1333, 2008.
Chai, F., Dugdale, R., Peng, T., Wilkerson, F., and Barber, R.: One-dimensional ecosystem model of the equatorial Pacific upwelling system. Part I: model development and silicon and nitrogen cycle, Deep-Sea Res. Pt. II, 49, 2713–2745, 2002.
Chelton, D. B., Deszoeke, R. A., Schlax, M. G., El Naggar, K., and Siwertz, N.: Geographical variability of the first baroclinic Rossby radius of deformation, J. Phys. Oceanogr., 28, 433–460, 1998.
Clayton, S., Dutkiewicz, S., Jahn, O., and Follows, M. J.: Dispersal, eddies, and the diversity of marine phytoplankton, Limnology and Oceanography: Fluids and Environments, 3, 182–197, https://doi.org/10.1215/21573689-2373515, 2013.
Cotti-Rausch, B. E., Lomas, M. W., Lachenmyer, E. M., Goldman, E. A., Bell, D. W., Goldberg, S. R., and Richardson, T. L.: Mesoscale and sub-mesoscale variability in phytoplankton community composition in the Sargasso Sea, Deep-Sea Res. Pt. I, 110, 106–122, 2016.
Danabasoglu, G., McWilliams, J., and Gent, P.: The role of mesoscale tracer transports in the global ocean circulation, Science, 264, 1123–1125, 1994.
Doney, S. C.: Major challenges confronting marine biogeochemical modeling, Global Biogeochem. Cy., 13, 705–714, 1999.
Doney, S. C., Glover, D. M., McCue, S. J., and Fuentes, M.: Mesoscale variability of Sea-viewing Wide Field-of-view Sensor (SeaWiFS) satellite ocean color: Global patterns and spatial scales, J. Geophys. Res.-Oceans, 108, 3024, https://doi.org/10.1029/2001JC000843, 2003.
Dutkiewicz, S., Follows, M. J., and Parekh, P.: Interactions of the iron and phosphorus cycles: A three-dimensional model study, Global Biogeochem. Cy., 19, GB1021, https://doi.org/10.1029/2004GB002342, 2005.
Dutkiewicz, S., Follows, M. J., and Bragg, J. G.: Modeling the coupling of ocean ecology and biogeochemistry, Global Biogeochem. Cy., 23, GB4017, https://doi.org/10.1029/2008GB003405, 2009.
Dutkiewicz, S., Ward, B. A., Monteiro, F., and Follows, M.: Interconnection of nitrogen fixers and iron in the Pacific Ocean: Theory and numerical simulations, Global Biogeochem. Cy., 26, GB1012, https://doi.org/10.1029/2011GB004039, 2012.
Fiechter, J., Curchitser, E. N., Edwards, C. A., Chai, F., Goebel, N. L., and Chavez, F. P.: Air-sea CO2 fluxes in the California Current: Impacts of model resolution and coastal topography, Global Biogeochem. Cy., 28, 371–385, 2014.
Follows, M. J. and Dutkiewicz, S.: Modeling diverse communities of marine microbes, Annu. Rev. Mar. Sci., 3, 427–451, 2011.
Follows, M. J., Dutkiewicz, S., Grant, S., and Chisholm, S. W.: Emergent Biogeography of Microbial Communities in a Model Ocean, Science, 315, 1843–1846, 2007.
Garcia, H., Locarnini, R., Boyer, T., Antonov, J., and Levitus, S.: World Ocean Database 2005, Volume 4: Nutrients phosphate, nitrate, silicate [+ DVD], NOAA Atlas NESDIS, 2006.
Gregg, W., Ginoux, P., Schopf, P., and Casey, N.: Phytoplankton and iron: validation of a global three-dimensional ocean biogeochemical model, Deep-Sea Res. Pt. II, 50, 3143–3169, 2003.
Le Quéré, C., Harrison, S. P., Prentice, I. C., Buitenhuis, E. T., Aumont, O., Bopp, L., Claustre, H., Cunha, L. C. D., Geider, R., Giraud, X., Klaas, C., Kohfeld, K. E., Legendre, L., Manizza, M., Platt, T., Rivkin, R. B., Sathyendranath, S., Uitz, J., Watson, A. J., and Wolf-Gladrow, D.: Ecosystem dynamics based on plankton functional types for global ocean biogeochemistry models, Glob. Change Biol., 11, 2016–2040, 2005.
Lévy, M.: The Modulation of Biological Production by Oceanic Mesoscale Turbulence, in: Transport and Mixing in Geophysical Flows, Vol. 744, p. 219, Springer Berlin Heidelberg, 2008.
Lévy, M., Mémery, L., and Madec, G.: The onset of a bloom after deep winter convection in the northwestern Mediterranean sea: mesoscale process study with a primitive equation model, J. Marine Syst., 16, 7–21, 1998.
Lévy, M., Klein, P., and Tréguier, A.-M.: Impact of sub-mesoscale physics on production and subduction of phytoplankton in an oligotrophic regime, J. Mar. Res., 59, 535–565, 2001.
Mahadevan, A.: The impact of submesoscale physics on primary productivity of plankton, Annu. Rev. Mar. Sci., 8, 161–184, 2016.
Mahadevan, A. and Archer, D.: Modeling the impact of fronts and mesoscale circulation on the nutrient supply and biogeochemistry of the upper ocean, J. Geophys. Res., 105, 1209–1225, 2000.
Marshall, J., Hill, C., Perelman, L., and Adcroft, A.: Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean modeling, J. Geophys. Res., 102, 5733–5752, 1997.
McGillicuddy, D., Anderson, L., Doney, S., and Maltrud, M.: Eddy-driven sources and sinks of nutrients in the upper ocean: Results from a 0.1 resolution model of the North Atlantic, Global Biogeochem. Cy., 17, 1035, https://doi.org/10.1029/2002GB001987, 2003.
Menemenlis, D., Campin, J., Heimbach, P., Hill, C., Lee, T., Nguyen, A., Schodlok, M., and Zhang, H.: ECCO2: High resolution global ocean and sea ice data synthesis, Mercator Ocean Quarterly Newsletter, 31, 13–21, 2008.
Monteiro, F., Dutkiewicz, S., and Follows, M.: Biogeographical controls on the marine nitrogen fixers, Global Biogeochem. Cy., 25, GB2003, https://doi.org/10.1029/2010GB003902, 2011.
Oschlies, A. and Garçon, V.: Eddy-induced enhancement of primary production in a model of the North Atlantic Ocean, Nature, 394, 266–269, 1998.
Platt, T.: Local phytoplankton abundance and turbulence, in: Deep Sea Research and Oceanographic Abstracts, 19, 183–187, https://doi.org/10.1016/0011-7471(72)90029-0, Elsevier, 1972.
Prowe, A. E. F., Pahlow, M., and Oschlies, A.: Controls on the diversity-productivity relationship in a marine ecosystem model, Ecol. Model., 225, 167–176, 2012.
Sinha, B., Buitenhuis, E. T., Le Quere, C., and Anderson, T. R.: Comparison of the emergent behaviour of a complex ecosystem model in two ocean general circulation models, Prog. Oceanogr., 84, 204–224, 2010.
Smagorinsky, J.: General circulation experiments with the primitive equations: I. the basic experiment*, Mon. Weather Rev., 91, 99–164, 1963.
Spall, S. and Richards, K.: A numerical model of mesoscale frontal instabilities and plankton dynamics – I. Model formulation and initial experiments, Deep-Sea Res. Pt. I, 47, 1261–1301, 2000.
Stammer, D., Balmaseda, M., Heimbach, P., Köhl, A., and Weaver, A.: Ocean data assimilation in support of climate applications: status and perspectives, Annu. Rev. Mar. Sci., 8, 491–518, 2016.
Strass, V. H.: Chlorophyll patchiness caused by mesoscale upwelling at fronts, Deep-Sea Res. Pt. A, 39, 75–96, 1992.
Tilman, D., Kilham, S., and Kilham, P.: Phytoplankton community ecology: the role of limiting nutrients, A. Rev. Ecol. Syst., 13, 349–372, 1982.
Vallina, S. M., Ward, B. A., Dutkiewicz, S., and Follows, M. J.: Maximal feeding with active prey-switching: A kill-the-winner functional response and its effect on global diversity and biogeography, Prog. Oceanogr., 120, 93–109, 2014.
Ward, B. A., Dutkiewicz, S., Jahn, O., and Follows, M. J.: A size-structured food-web model for the global ocean, Limnol. Oceanogr., 57, 1877, https://doi.org/10.4319/lo.2012.57.6.1877, 2012.
Wunsch, C. and Heimbach, P.: Practical global oceanic state estimation, Physica D, 230, 197–208, 2007.
Wunsch, C. and Heimbach, P.: Dynamically and kinematically consistent global ocean circulation and ice state estimates, in: Ocean Circulation and Climate: A 21 Century Perspective, Elsevier, 2013.
Wunsch, C., Heimbach, P., Ponte, R. M., Fukumori, I., and Members, T. E.-G. C.: The Global General Circulation of the Ocean Estimated by the ECCO-Consortium, Oceanography, 22, 88–103, https://doi.org/10.5670/oceanog.2009.41, 2009.
Zhang, W. G., McGillicuddy, D. J., and Gawarkiewicz, G. G.: Is biological productivity enhanced at the New England shelfbreak front?, J. Geophys. Res.-Oceans, 118, 517–535, 2013.
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