Articles | Volume 15, issue 11
https://doi.org/10.5194/bg-15-3311-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-15-3311-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Methane-oxidizing seawater microbial communities from an Arctic shelf
Graduate School of Oceanography, University of Rhode Island,
Narragansett, RI 02882, USA
currently at: Alfred Wegener Institute Helmholtz Centre for Polar and
Marine Research, 27570 Bremerhaven, Germany
John B. Kirkpatrick
Graduate School of Oceanography, University of Rhode Island,
Narragansett, RI 02882, USA
The Evergreen State College, Olympia, WA 98505, USA
Steven D'Hondt
Graduate School of Oceanography, University of Rhode Island,
Narragansett, RI 02882, USA
Brice Loose
Graduate School of Oceanography, University of Rhode Island,
Narragansett, RI 02882, USA
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Alessandra D'Angelo, Cynthia Garcia-Eidell, Zak Kerrigan, Jacob Strock, Frances Crable, Nikolas VanKeersbilck, Humair Raziuddin, Theressa Ewa, Samira Umar, Andrew L. King, Miquel Gonzelez-Meler, and Brice Loose
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-157, https://doi.org/10.5194/bg-2023-157, 2023
Manuscript not accepted for further review
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In summer 2019, the Northwest Passage Project explored the Canadian Arctic Archipelago (CAA). Our study revealed methane oversaturation in upper CAA waters, driven by meltwater, turbidity, and specific microbial activity. It highlights the need to distinguish active methane zones. Western CAA showed higher methane activity, while the east had lower levels due to Atlantic Water influence. These findings contribute to understanding Arctic methane dynamics and its climate change implications.
Alessandra D'Angelo, Cynthia Garcia-Eidell, Zak Kerrigan, Jacob Strock, Frances Crable, Nikolas VanKeersbilck, Humair Raziuddin, Theressa Ewa, Samira Umar, Andrew L. King, Miquel Gonzelez-Meler, and Brice Loose
EGUsphere, https://doi.org/10.5194/egusphere-2023-74, https://doi.org/10.5194/egusphere-2023-74, 2023
Preprint archived
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In this paper, we seek to further elucidate the methane budget in the Northwest Passage, and detect its main association with the environmental features and the biogenic control within the water column and the sea ice. Collectively, we can divide the entire study area into: (a) sea ice, with methane excess; (b) meltwaters, characterized by methane oxidations in oversaturated waters; (c) Pacific waters, with high methane oxidation rates; (d) Atlantic regime, mostly abiotic for methane.
Alessandra D'Angelo, Cynthia Garcia-Eidell, Christopher Knowlton, Andrea Gingras, Holly Morin, Dwight Coleman, Jessica Kaelblein, Humair Raziuddin, Nikolas VanKeersbilck, Tristan J. Rivera, Krystian Kopka, Yoana Boleaga, Korenna Estes, Andrea Nodal, Ericka Schulze, Theressa Ewa, Mirella Shaban, Samira Umar, Rosanyely Santana, Jacob Strock, Erich Gruebel, Michael Digilio, Rick Ludkin, Donglai Gong, Zak Kerrigan, Mia Otokiak, Frances Crable, Nicole Trenholm, Triston Millstone, Kevin Montenegro, Melvin Kim, Gibson Porter, Tomer Ketter, Max Berkelhammer, Andrew L. King, Miguel Angel Gonzalez-Meler, and Brice Loose
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2022-306, https://doi.org/10.5194/essd-2022-306, 2022
Manuscript not accepted for further review
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The Canadian Arctic Archipelago (CAA) is characterized by advection from the Pacific (PW) and Atlantic waters (AW), ice melt, local river discharge and net precipitation. In a changing Arctic, it is crucial to monitor the hydrography of this Region. We combined chemical and physical parameters into an Optimal MultiParameter Analysis, for the detection of the source water fractions characterizing the CAA. The outcome was effective about the PW and AW, and discriminated the meltwaters origin.
Susumu Umino, Gregory F. Moore, Brian Boston, Rosalind Coggon, Laura Crispini, Steven D'Hondt, Michael O. Garcia, Takeshi Hanyu, Frieder Klein, Nobukazu Seama, Damon A. H. Teagle, Masako Tominaga, Mikiya Yamashita, Michelle Harris, Benoit Ildefonse, Ikuo Katayama, Yuki Kusano, Yohey Suzuki, Elizabeth Trembath-Reichert, Yasuhiro Yamada, Natsue Abe, Nan Xiao, and Fumio Inagaki
Sci. Dril., 29, 69–82, https://doi.org/10.5194/sd-29-69-2021, https://doi.org/10.5194/sd-29-69-2021, 2021
Lisa Thompson, Madison Smith, Jim Thomson, Sharon Stammerjohn, Steve Ackley, and Brice Loose
The Cryosphere, 14, 3329–3347, https://doi.org/10.5194/tc-14-3329-2020, https://doi.org/10.5194/tc-14-3329-2020, 2020
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The offshore winds around Antarctica can reach hurricane strength and produce intense cooling, causing the surface ocean to form a slurry of seawater and ice crystals. For the first time, we observed a buildup of heat and salt in the surface ocean, caused by loose ice crystal formation. We conclude that up to 1 m of ice was formed per day by the intense cooling, suggesting that unconsolidated crystals may be an important part of the total freezing that happens around Antarctica.
Cara C. Manning, Rachel H. R. Stanley, David P. Nicholson, Brice Loose, Ann Lovely, Peter Schlosser, and Bruce G. Hatcher
Biogeosciences, 16, 3351–3376, https://doi.org/10.5194/bg-16-3351-2019, https://doi.org/10.5194/bg-16-3351-2019, 2019
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We measured rates of biological activity and gas exchange in a Canadian estuary during ice melt. We quantified gas exchange using inert, deliberately released tracers and found that the gas transfer rate at > 90 % ice cover was 6 % of the rate for nearly ice-free conditions. We measured oxygen concentration and isotopic composition and used the data to detect changes in the rates of photosynthesis and respiration (autotrophy and heterotrophy) as the ice melted.
Arash Bigdeli, Brice Loose, An T. Nguyen, and Sylvia T. Cole
Ocean Sci., 13, 61–75, https://doi.org/10.5194/os-13-61-2017, https://doi.org/10.5194/os-13-61-2017, 2017
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We evaluated if numerical model output helps us to better estimate the physical forcing that drives the air–sea gas exchange rate (k) in sea ice zones. We used 36, 9 and 2 km horizontal resolution of regional MITgcm configuration with fine vertical spacing to evaluate the capability of the model to reproduce sea ice velocity, concentration, mixed layer depth and water velocities. We found that even the coarse-resolution model can make a modest contribution to gas exchange parameterization.
Related subject area
Biogeochemistry: Greenhouse Gases
Interferences caused by the biogeochemical methane cycle in peats during the assessment of abandoned oil wells
Carbon sequestration in different urban vegetation types in Southern Finland
Proglacial methane emissions driven by meltwater and groundwater flushing in a high-Arctic glacial catchment
Seasonal and interannual variability in CO2 fluxes in southern Africa seen by GOSAT
Air temperature and precipitation constraining the modelled wetland methane emissions in a boreal region in northern Europe
Ensemble estimates of global wetland methane emissions over 2000–2020
Seasonal carbon fluxes from vegetation and soil in a Mediterranean non-tidal salt marsh
Explainable machine learning for modeling of net ecosystem exchange in boreal forests
Dynamics of CO2 and CH4 fluxes in Red Sea mangrove soils
Nitrous oxide (N2O) in Macquarie Harbour, Tasmania
Technical note: A low-cost, automatic soil–plant–atmosphere enclosure system to investigate CO2 and evapotranspiration flux dynamics
Tidal influence on carbon dioxide and methane fluxes from tree stems and soils in mangrove forests
Drought conditions disrupt atmospheric carbon uptake in a Mediterranean saline lake
Physicochemical perturbation increases nitrous oxide production from denitrification in soils and sediments
Carbon degradation and mobilisation potentials of thawing permafrost peatlands in northern Norway inferred from laboratory incubations
Seasonal dynamics and regional distribution patterns of CO2 and CH4 in the north-eastern Baltic Sea
Rising Arctic Seas and Thawing Permafrost: Uncovering the Carbon Cycle Impact in a Thermokarst Lagoon System in the outer Mackenzie Delta, Canada
Interannual and seasonal variability of the air–sea CO2 exchange at Utö in the coastal region of the Baltic Sea
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CO2 emissions of drained coastal peatlands in the Netherlands and potential emission reduction by water infiltration systems
Intercomparison of biogenic CO2 flux models in four urban parks in the city of Zurich
Influence of wind strength and direction on diffusive methane fluxes and atmospheric methane concentrations above the North Sea
Surface CO2 Gradients Challenge Conventional CO2 Emission Quantification in Lentic Water Bodies under Calm Conditions
Eddy covariance fluxes of CO2, CH4 and N2O on a drained peatland forest after clearcutting
Spatiotemporal variability of CO2, N2O and CH4 fluxes from a semi-deciduous tropical forest soil in the Congo basin
Eddy Covariance Evaluation of Ecosystem Fluxes at a Temperate Saltmarsh in Victoria, Australia Shows Large CO2 Uptake
Using eddy covariance observations to determine the carbon sequestration characteristics of subalpine forests in the Qinghai–Tibet Plateau
Isotopomer labeling and oxygen dependence of hybrid nitrous oxide production
The emission of CO from tropical rainforest soils
CO2 flux characteristics of the grassland ecosystem and its response to environmental factors in the dry-hot valley of Jinsha River, China
Modelling CO2 and N2O emissions from soils in silvopastoral systems of the West African Sahelian band
A case study on topsoil removal and rewetting for paludiculture: effect on biogeochemistry and greenhouse gas emissions from Typha latifolia, Typha angustifolia, and Azolla filiculoides
Assessing improvements in global ocean pCO2 machine learning reconstructions with Southern Ocean autonomous sampling
Timescale dependence of airborne fraction and underlying climate–carbon-cycle feedbacks for weak perturbations in CMIP5 models
Technical note: Preventing CO2 overestimation from mercuric or copper(II) chloride preservation of dissolved greenhouse gases in freshwater samples
Exploring temporal and spatial variation of nitrous oxide flux using several years of peatland forest automatic chamber data
Diurnal versus spatial variability of greenhouse gas emissions from an anthropogenically modified lowland river in Germany
Regional assessment and uncertainty analysis of carbon and nitrogen balances at cropland scale using the ecosystem model LandscapeDNDC
Resolving heterogeneous fluxes from tundra halves the growing season carbon budget
Lawns and meadows in urban green space – a comparison from perspectives of greenhouse gases, drought resilience and plant functional types
Large contribution of soil N2O emission to the global warming potential of a large-scale oil palm plantation despite changing from conventional to reduced management practices
Identifying landscape hot and cold spots of soil greenhouse gas fluxes by combining field measurements and remote sensing data
Enhanced Southern Ocean CO2 outgassing as a result of stronger and poleward shifted southern hemispheric westerlies
Spatial and temporal variability of methane emissions and environmental conditions in a hyper-eutrophic fishpond
Optical and radar Earth observation data for upscaling methane emissions linked to permafrost degradation in sub-Arctic peatlands in northern Sweden
Herbivore–shrub interactions influence ecosystem respiration and biogenic volatile organic compound composition in the subarctic
Methane emissions due to reservoir flushing: a significant emission pathway?
Carbon dioxide and methane fluxes from mounds of African fungus-growing termites
Diel and seasonal methane dynamics in the shallow and turbulent Wadden Sea
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Sebastian F. A. Jordan, Stefan Schloemer, Martin Krüger, Tanja Heffner, Marcus A. Horn, and Martin Blumenberg
Biogeosciences, 22, 809–830, https://doi.org/10.5194/bg-22-809-2025, https://doi.org/10.5194/bg-22-809-2025, 2025
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Using a multilayer approach, we studied the methane flux, soil gas composition, and isotopic signatures of soil methane and carbon dioxide at eight cut and buried abandoned oil wells in a peat-rich area of northern Germany. The detected methane emissions were of biogenic, peat origin and were not associated with the abandoned wells. Additional microbial analysis and methane oxidation rate measurements demonstrated a high methane emission mitigation potential in the studied peat soils.
Laura Thölix, Leif Backman, Minttu Havu, Esko Karvinen, Jesse Soininen, Justine Trémeau, Olli Nevalainen, Joyson Ahongshangbam, Leena Järvi, and Liisa Kulmala
Biogeosciences, 22, 725–749, https://doi.org/10.5194/bg-22-725-2025, https://doi.org/10.5194/bg-22-725-2025, 2025
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Cities aim for carbon neutrality and seek to understand urban vegetation's role as a carbon sink. Direct measurements are challenging, so models are used to estimate the urban carbon cycle. We evaluated model performance at estimating carbon sequestration in lawns, park trees, and urban forests in Helsinki, Finland. Models captured seasonal and annual variations well. Trees had higher sequestration rates than lawns, and irrigation often enhanced carbon sinks.
Gabrielle E. Kleber, Leonard Magerl, Alexandra V. Turchyn, Stefan Schloemer, Mark Trimmer, Yizhu Zhu, and Andrew Hodson
Biogeosciences, 22, 659–674, https://doi.org/10.5194/bg-22-659-2025, https://doi.org/10.5194/bg-22-659-2025, 2025
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Our research on Svalbard shows that glacier melt rivers can transport large amounts of methane, a potent greenhouse gas. By studying a glacier over one summer, we found that its river was highly concentrated in methane, suggesting that rivers could provide a significant source of methane emissions as the Arctic warms and glaciers melt. This is the first time such emissions have been measured on Svalbard, indicating a wider environmental concern as such processes are occurring across the Arctic.
Eva-Marie Metz, Sanam Noreen Vardag, Sourish Basu, Martin Jung, and André Butz
Biogeosciences, 22, 555–584, https://doi.org/10.5194/bg-22-555-2025, https://doi.org/10.5194/bg-22-555-2025, 2025
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We estimate CO2 fluxes in semiarid southern Africa from 2009 to 2018 based on satellite CO2 measurements and atmospheric inverse modeling. By selecting process-based vegetation models, which agree with the satellite CO2 fluxes, we find that soil respiration mainly drives the seasonality, whereas photosynthesis substantially influences the interannual variability. Our study emphasizes the need for better representation of the response of semiarid ecosystems to soil rewetting in vegetation models.
Tuula Aalto, Aki Tsuruta, Jarmo Mäkelä, Jurek Müller, Maria Tenkanen, Eleanor Burke, Sarah Chadburn, Yao Gao, Vilma Mannisenaho, Thomas Kleinen, Hanna Lee, Antti Leppänen, Tiina Markkanen, Stefano Materia, Paul A. Miller, Daniele Peano, Olli Peltola, Benjamin Poulter, Maarit Raivonen, Marielle Saunois, David Wårlind, and Sönke Zaehle
Biogeosciences, 22, 323–340, https://doi.org/10.5194/bg-22-323-2025, https://doi.org/10.5194/bg-22-323-2025, 2025
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Wetland methane responses to temperature and precipitation were studied in a boreal wetland-rich region in northern Europe using ecosystem models, atmospheric inversions, and upscaled flux observations. The ecosystem models differed in their responses to temperature and precipitation and in their seasonality. However, multi-model means, inversions, and upscaled fluxes had similar seasonality, and they suggested co-limitation by temperature and precipitation.
Zhen Zhang, Benjamin Poulter, Joe R. Melton, William J. Riley, George H. Allen, David J. Beerling, Philippe Bousquet, Josep G. Canadell, Etienne Fluet-Chouinard, Philippe Ciais, Nicola Gedney, Peter O. Hopcroft, Akihiko Ito, Robert B. Jackson, Atul K. Jain, Katherine Jensen, Fortunat Joos, Thomas Kleinen, Sara H. Knox, Tingting Li, Xin Li, Xiangyu Liu, Kyle McDonald, Gavin McNicol, Paul A. Miller, Jurek Müller, Prabir K. Patra, Changhui Peng, Shushi Peng, Zhangcai Qin, Ryan M. Riggs, Marielle Saunois, Qing Sun, Hanqin Tian, Xiaoming Xu, Yuanzhi Yao, Yi Xi, Wenxin Zhang, Qing Zhu, Qiuan Zhu, and Qianlai Zhuang
Biogeosciences, 22, 305–321, https://doi.org/10.5194/bg-22-305-2025, https://doi.org/10.5194/bg-22-305-2025, 2025
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This study assesses global methane emissions from wetlands between 2000 and 2020 using multiple models. We found that wetland emissions increased by 6–7 Tg CH4 yr-1 in the 2010s compared to the 2000s. Rising temperatures primarily drove this increase, while changes in precipitation and CO2 levels also played roles. Our findings highlight the importance of wetlands in the global methane budget and the need for continuous monitoring to understand their impact on climate change.
Lorena Carrasco-Barea, Dolors Verdaguer, Maria Gispert, Xavier D. Quintana, Hélène Bourhis, and Laura Llorens
Biogeosciences, 22, 289–304, https://doi.org/10.5194/bg-22-289-2025, https://doi.org/10.5194/bg-22-289-2025, 2025
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Carbon dioxide fluxes have been measured seasonally in four plant species in a Mediterranean non-tidal salt marsh, highlighting the high carbon removal potential that these species have. Carbon dioxide and methane emissions from soil showed high variability among the habitats studied, and they were generally higher than those observed in tidal salt marshes. Our results are important for making more accurate predictions regarding carbon emissions from these ecosystems.
Ekaterina Ezhova, Topi Laanti, Anna Lintunen, Pasi Kolari, Tuomo Nieminen, Ivan Mammarella, Keijo Heljanko, and Markku Kulmala
Biogeosciences, 22, 257–288, https://doi.org/10.5194/bg-22-257-2025, https://doi.org/10.5194/bg-22-257-2025, 2025
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Machine learning (ML) models are gaining popularity in biogeosciences. They are applied as gap-filling methods and used to upscale carbon fluxes to larger areas. Here we use explainable artificial intelligence (XAI) methods to elucidate the performance of machine learning models for carbon dioxide fluxes in boreal forests. We show that statistically equal models treat input variables differently. XAI methods can help scientists make informed decisions when applying ML models in their research.
Jessica Breavington, Alexandra Steckbauer, Chuancheng Fu, Mongi Ennasri, and Carlos M. Duarte
Biogeosciences, 22, 117–134, https://doi.org/10.5194/bg-22-117-2025, https://doi.org/10.5194/bg-22-117-2025, 2025
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Mangrove carbon storage in the Red Sea is lower than average due to challenging growth conditions. We collected mangrove soil cores over multiple seasons to measure greenhouse gas (GHG) flux of carbon dioxide and methane. GHG emissions are a small offset to mangrove carbon storage overall but punctuated by periods of high emission. This variation is linked to environmental and soil properties, which were also measured. The findings aid understanding of GHG dynamics in arid mangrove ecosystems.
Johnathan Daniel Maxey, Neil D. Hartstein, Hermann W. Bange, and Moritz Müller
Biogeosciences, 21, 5613–5637, https://doi.org/10.5194/bg-21-5613-2024, https://doi.org/10.5194/bg-21-5613-2024, 2024
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The distribution of N2O in fjord-like estuaries is poorly described in the Southern Hemisphere. Our study describes N2O distribution and its drivers in one such system in Macquarie Harbour, Tasmania. Water samples were collected seasonally in 2022 and 2023. Results show the system removes atmospheric N2O when river flow is high, whereas the system emits N2O when the river flow is low. N2O generated in basins is intercepted by the surface water and exported to the ocean during high river flow.
Wael Al Hamwi, Maren Dubbert, Jörg Schaller, Matthias Lück, Marten Schmidt, and Mathias Hoffmann
Biogeosciences, 21, 5639–5651, https://doi.org/10.5194/bg-21-5639-2024, https://doi.org/10.5194/bg-21-5639-2024, 2024
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We present a fully automatic, low-cost soil–plant enclosure system to monitor CO2 and evapotranspiration fluxes within greenhouse experiments. It operates in two modes: independent, using low-cost sensors, and dependent, where multiple chambers connect to a single gas analyzer via a low-cost multiplexer. This system provides precise, accurate measurements and high temporal resolution, enabling comprehensive monitoring of plant–soil responses to various treatments and conditions.
Zhao-Jun Yong, Wei-Jen Lin, Chiao-Wen Lin, and Hsing-Juh Lin
Biogeosciences, 21, 5247–5260, https://doi.org/10.5194/bg-21-5247-2024, https://doi.org/10.5194/bg-21-5247-2024, 2024
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We measured CO2 and CH4 fluxes from mangrove stems and soils of Avicennia marina and Kandelia obovata during tidal cycles. Both stem types served as CO2 and CH4 sources, emitting less CH4 than soils, with no difference in CO2 flux. While A. marina stems showed increased CO2 fluxes from low to high tides, they acted as a CH4 sink before flooding and as a source after ebbing. However, K. obovata stems showed no flux pattern. This study highlights the need to consider tidal influence and species.
Ihab Alfadhel, Ignacio Peralta-Maraver, Isabel Reche, Enrique P. Sánchez-Cañete, Sergio Aranda-Barranco, Eva Rodríguez-Velasco, Andrew S. Kowalski, and Penélope Serrano-Ortiz
Biogeosciences, 21, 5117–5129, https://doi.org/10.5194/bg-21-5117-2024, https://doi.org/10.5194/bg-21-5117-2024, 2024
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Inland saline lakes are crucial in the global carbon cycle, but increased droughts may alter their carbon exchange capacity. We measured CO2 and CH4 fluxes in a Mediterranean saline lake using the eddy covariance method under dry and wet conditions. We found the lake acts as a carbon sink during wet periods but not during droughts. These results highlight the importance of saline lakes in carbon sequestration and their vulnerability to climate-change-induced droughts.
Nathaniel B. Weston, Cynthia Troy, Patrick J. Kearns, Jennifer L. Bowen, William Porubsky, Christelle Hyacinthe, Christof Meile, Philippe Van Cappellen, and Samantha B. Joye
Biogeosciences, 21, 4837–4851, https://doi.org/10.5194/bg-21-4837-2024, https://doi.org/10.5194/bg-21-4837-2024, 2024
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Nitrous oxide (N2O) is a potent greenhouse and ozone-depleting gas produced largely from microbial nitrogen cycling processes, and human activities have resulted in increases in atmospheric N2O. We investigate the role of physical and chemical disturbances to soils and sediments in N2O production. We demonstrate that physicochemical perturbation increases N2O production, microbial community adapts over time, and initial perturbation appears to confer resilience to subsequent disturbance.
Sigrid Trier Kjær, Sebastian Westermann, Nora Nedkvitne, and Peter Dörsch
Biogeosciences, 21, 4723–4737, https://doi.org/10.5194/bg-21-4723-2024, https://doi.org/10.5194/bg-21-4723-2024, 2024
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Permafrost peatlands are thawing due to climate change, releasing large quantities of carbon that degrades upon thawing and is released as CO2, CH4 or dissolved organic carbon (DOC). We incubated thawed Norwegian permafrost peat plateaus and thermokarst pond sediment found next to permafrost for up to 350 d to measure carbon loss. CO2 production was initially the highest, whereas CH4 production increased over time. The largest carbon loss was measured at the top of the peat plateau core as DOC.
Silvie Lainela, Erik Jacobs, Stella-Theresa Luik, Gregor Rehder, and Urmas Lips
Biogeosciences, 21, 4495–4519, https://doi.org/10.5194/bg-21-4495-2024, https://doi.org/10.5194/bg-21-4495-2024, 2024
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We evaluate the variability of carbon dioxide and methane in the surface layer of the north-eastern basins of the Baltic Sea in 2018. We show that the shallower coastal areas have considerably higher spatial variability and seasonal amplitude of surface layer pCO2 and cCH4 than measured in the offshore areas of the Baltic Sea. Despite this high variability, caused mostly by coastal physical processes, the average annual air–sea CO2 fluxes differed only marginally between the sub-basins.
Maren Jenrich, Juliane Wolter, Susanne Liebner, Christian Knoblauch, Guido Grosse, Fiona Giebeler, Dustin Whalen, and Jens Strauss
EGUsphere, https://doi.org/10.5194/egusphere-2024-2891, https://doi.org/10.5194/egusphere-2024-2891, 2024
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Climate warming in the Arctic is causing the erosion of permafrost coasts and the transformation of permafrost lakes into lagoons. To understand how this affects greenhouse gas (GHG) emissions, we studied carbon dioxide (CO₂) and methane (CH₄) production in lagoons with varying sea connections. Younger lagoons produce more CH₄, while CO₂ increases in more marine conditions. Flooding of permafrost lowlands due to rising sea levels may lead to higher GHG emissions from Arctic coasts in the future.
Martti Honkanen, Mika Aurela, Juha Hatakka, Lumi Haraguchi, Sami Kielosto, Timo Mäkelä, Jukka Seppälä, Simo-Matti Siiriä, Ken Stenbäck, Juha-Pekka Tuovinen, Pasi Ylöstalo, and Lauri Laakso
Biogeosciences, 21, 4341–4359, https://doi.org/10.5194/bg-21-4341-2024, https://doi.org/10.5194/bg-21-4341-2024, 2024
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The exchange of CO2 between the sea and the atmosphere was studied in the Archipelago Sea, Baltic Sea, in 2017–2021, using an eddy covariance technique. The sea acted as a net source of CO2 with an average yearly emission of 27.1 gC m-2 yr-1, indicating that the marine ecosystem respired carbon that originated elsewhere. The yearly CO2 emission varied between 18.2–39.2 gC m-2 yr-1, mostly due to the yearly variation of ecosystem carbon uptake.
Tea Thum, Tuuli Miinalainen, Outi Seppälä, Holly Croft, Cheryl Rogers, Ralf Staebler, Silvia Caldararu, and Sönke Zaehle
EGUsphere, https://doi.org/10.5194/egusphere-2024-2802, https://doi.org/10.5194/egusphere-2024-2802, 2024
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Climate change has potential to influence the carbon sequestration potential of terrestrial ecosystems and here also nitrogen cycle is important. We used a terrestrial biosphere model QUINCY at mixed deciduous forest in Canada. We investigated the usefulness of using leaf area index and leaf chlorophyll content to improve the parameterization of the model. This work paves way for using spaceborn observations in the model parameterization, also including information on the nitrogen cycle.
Ralf C. H. Aben, Daniël van de Craats, Jim Boonman, Stijn H. Peeters, Bart Vriend, Coline C. F. Boonman, Ype van der Velde, Gilles Erkens, and Merit van den Berg
Biogeosciences, 21, 4099–4118, https://doi.org/10.5194/bg-21-4099-2024, https://doi.org/10.5194/bg-21-4099-2024, 2024
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Drained peatlands cause high CO2 emissions. We assessed the effectiveness of subsurface water infiltration systems (WISs) in reducing CO2 emissions related to increases in water table depth (WTD) on 12 sites for up to 4 years. Results show WISs markedly reduced emissions by 2.1 t CO2-C ha-1 yr-1. The relationship between the amount of carbon above the WTD and CO2 emission was stronger than the relationship between WTD and emission. Long-term monitoring is crucial for accurate emission estimates.
Stavros Stagakis, Dominik Brunner, Junwei Li, Leif Backman, Anni Karvonen, Lionel Constantin, Leena Järvi, Minttu Havu, Jia Chen, Sophie Emberger, and Liisa Kulmala
EGUsphere, https://doi.org/10.5194/egusphere-2024-2475, https://doi.org/10.5194/egusphere-2024-2475, 2024
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The balance between CO2 uptake and emissions from urban green areas is still not well understood. This study evaluated for the first time the urban park CO2 exchange simulations by four different types of biosphere models by comparing them with observations. Even though some advantages and disadvantages of the different model types were identified, there was no strong evidence that more complex models performed better than simple ones.
Ingeborg Bussmann, Eric P. Achterberg, Holger Brix, Nicolas Brüggemann, Götz Flöser, Claudia Schütze, and Philipp Fischer
Biogeosciences, 21, 3819–3838, https://doi.org/10.5194/bg-21-3819-2024, https://doi.org/10.5194/bg-21-3819-2024, 2024
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Methane (CH4) is an important greenhouse gas and contributes to climate warming. However, the input of CH4 from coastal areas to the atmosphere is not well defined. Dissolved and atmospheric CH4 was determined at high spatial resolution in or above the North Sea. The atmospheric CH4 concentration was mainly influenced by wind direction. With our detailed study on the spatial distribution of CH4 fluxes we were able to provide a detailed and more realistic estimation of coastal CH4 fluxes.
Patrick Aurich, Uwe Spank, and Matthias Koschorreck
EGUsphere, https://doi.org/10.5194/egusphere-2024-2550, https://doi.org/10.5194/egusphere-2024-2550, 2024
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Lakes can be sources and sinks for the greenhouse gas carbon dioxide. The gas exchange between the atmosphere and the water can be measured by taking gas samples in both. However, the depth of water samples is not well defined, which may cause errors. We hypothesized that gradients of CO2 concentrations develop under the surface when wind speeds are very low. Our measurements show that such a gradient can occur in calm nights, potentially shifting a lake from a CO2 sink to a source.
Olli-Pekka Tikkasalo, Olli Peltola, Pavel Alekseychik, Juha Heikkinen, Samuli Launiainen, Aleksi Lehtonen, Qian Li, Eduardo Martinez-García, Mikko Peltoniemi, Petri Salovaara, Ville Tuominen, and Raisa Mäkipää
EGUsphere, https://doi.org/10.5194/egusphere-2024-1994, https://doi.org/10.5194/egusphere-2024-1994, 2024
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The emissions of greenhouse gases (GHG) carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O) were measured from a clearcut peatland forest site. The measurements covered the whole year of 2022 which was the second growing season after the clearcut. The site was a strong GHG source and the highest emissions came from CO2 followed by N2O and CH4. A statistical model that included information on different surfaces in the site was developed to unravel surface-type specific GHG fluxes.
Roxanne Daelman, Marijn Bauters, Matti Barthel, Emmanuel Bulonza, Lodewijk Lefevre, José Mbifo, Johan Six, Klaus Butterbach-Bahl, Benjamin Wolf, Ralf Kiese, and Pascal Boeckx
EGUsphere, https://doi.org/10.5194/egusphere-2024-2346, https://doi.org/10.5194/egusphere-2024-2346, 2024
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The increase in atmospheric concentrations of several greenhouse gasses (GHG) since 1750 is attributed to human activity, however natural ecosystems, such as tropical forests, also contribute to GHG budgets. The Congo basin hosts the second largest tropical forest and is understudied. In this study, measurements of soil GHG exchange were carried out during 16 months in a tropical forest in the Congo Basin. Overall, the soil acted as a major source for CO2 and N2O and a minor sink for CH4.
Ruth Reef, Edoardo Daly, Tivanka Anandappa, Eboni-Jane Vienna-Hallam, Harriet Robertson, Matthew Peck, and Adrien Guyot
EGUsphere, https://doi.org/10.5194/egusphere-2024-2182, https://doi.org/10.5194/egusphere-2024-2182, 2024
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Studies show that saltmarshes excel at capturing carbon from the atmosphere. In this study, we measured CO2 flux in an Australian temperate saltmarsh on French Island. The temperate saltmarsh exhibited strong seasonality. During the warmer growing season, the saltmarsh absorbed on average 10.5 grams of CO2 from the atmosphere per m2 daily. Even in winter, when plants were dormant, it continued to be a CO2 sink, albeit smaller. Cool temperatures and high cloud cover inhibit carbon sequestration.
Niu Zhu, Jinniu Wang, Dongliang Luo, Xufeng Wang, Cheng Shen, and Ning Wu
Biogeosciences, 21, 3509–3522, https://doi.org/10.5194/bg-21-3509-2024, https://doi.org/10.5194/bg-21-3509-2024, 2024
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Our study delves into the vital role of subalpine forests in the Qinghai–Tibet Plateau as carbon sinks in the context of climate change. Utilizing advanced eddy covariance systems, we uncover their significant carbon sequestration potential, observing distinct seasonal patterns influenced by temperature, humidity, and radiation. Notably, these forests exhibit robust carbon absorption, with potential implications for global carbon balance.
Colette L. Kelly, Nicole M. Travis, Pascale Anabelle Baya, Claudia Frey, Xin Sun, Bess B. Ward, and Karen L. Casciotti
Biogeosciences, 21, 3215–3238, https://doi.org/10.5194/bg-21-3215-2024, https://doi.org/10.5194/bg-21-3215-2024, 2024
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Nitrous oxide, a potent greenhouse gas, accumulates in regions of the ocean that are low in dissolved oxygen. We used a novel combination of chemical tracers to determine how nitrous oxide is produced in one of these regions, the eastern tropical North Pacific Ocean. Our experiments showed that the two most important sources of nitrous oxide under low-oxygen conditions are denitrification, an anaerobic process, and a novel “hybrid” process performed by ammonia-oxidizing archaea.
Hella van Asperen, Thorsten Warneke, Alessandro Carioca de Araújo, Bruce Forsberg, Sávio José Filgueiras Ferreira, Thomas Röckmann, Carina van der Veen, Sipko Bulthuis, Leonardo Ramos de Oliveira, Thiago de Lima Xavier, Jailson da Mata, Marta de Oliveira Sá, Paulo Ricardo Teixeira, Julie Andrews de França e Silva, Susan Trumbore, and Justus Notholt
Biogeosciences, 21, 3183–3199, https://doi.org/10.5194/bg-21-3183-2024, https://doi.org/10.5194/bg-21-3183-2024, 2024
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Carbon monoxide (CO) is regarded as an important indirect greenhouse gas. Soils can emit and take up CO, but, until now, uncertainty remains as to which process dominates in tropical rainforests. We present the first soil CO flux measurements from a tropical rainforest. Based on our observations, we report that tropical rainforest soils are a net source of CO. In addition, we show that valley streams and inundated areas are likely additional hot spots of CO in the ecosystem.
Chaolei Yang, Yufeng Tian, Jingqi Cui, Guangxiong He, Jingyuan Li, Canfeng Li, Haichuang Duan, Zong Wei, Liu Yan, Xin Xia, Yong Huang, and Aihua Jiang
EGUsphere, https://doi.org/10.5194/egusphere-2024-1226, https://doi.org/10.5194/egusphere-2024-1226, 2024
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The environmental factors and CO2 flux of the grassland ecosystem in the dry-hot valley of the Jinsha River exhibited highly seasonal characteristics. During the rainy season, the grassland showed a carbon sink feature, while during the dry season, it exhibited carbon emission status. Throughout the entire year, the grassland ecosystem acted as a weak carbon source, exhibiting a carbon-neutral. The CO2 flux was most influenced by vapor pressure deficit, relative humidity, and soil water content.
Yélognissè Agbohessou, Claire Delon, Manuela Grippa, Eric Mougin, Daouda Ngom, Espoir Koudjo Gaglo, Ousmane Ndiaye, Paulo Salgado, and Olivier Roupsard
Biogeosciences, 21, 2811–2837, https://doi.org/10.5194/bg-21-2811-2024, https://doi.org/10.5194/bg-21-2811-2024, 2024
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Emissions of greenhouse gases in the Sahel are not well represented because they are considered weak compared to the rest of the world. However, natural areas in the Sahel emit carbon dioxide and nitrous oxides, which need to be assessed because of extended surfaces. We propose an assessment of such emissions in Sahelian silvopastoral systems and of how they are influenced by environmental characteristics. These results are essential to inform climate change strategies in the region.
Merit van den Berg, Thomas M. Gremmen, Renske J. E. Vroom, Jacobus van Huissteden, Jim Boonman, Corine J. A. van Huissteden, Ype van der Velde, Alfons J. P. Smolders, and Bas P. van de Riet
Biogeosciences, 21, 2669–2690, https://doi.org/10.5194/bg-21-2669-2024, https://doi.org/10.5194/bg-21-2669-2024, 2024
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Drained peatlands emit 3 % of the global greenhouse gas emissions. Paludiculture is a way to reduce CO2 emissions while at the same time generating an income for landowners. The side effect is the potentially high methane emissions. We found very high methane emissions for broadleaf cattail compared with narrowleaf cattail and water fern. The rewetting was, however, effective to stop CO2 emissions for all species. The highest potential to reduce greenhouse gas emissions had narrowleaf cattail.
Thea H. Heimdal, Galen A. McKinley, Adrienne J. Sutton, Amanda R. Fay, and Lucas Gloege
Biogeosciences, 21, 2159–2176, https://doi.org/10.5194/bg-21-2159-2024, https://doi.org/10.5194/bg-21-2159-2024, 2024
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Measurements of ocean carbon are limited in time and space. Machine learning algorithms are therefore used to reconstruct ocean carbon where observations do not exist. Improving these reconstructions is important in order to accurately estimate how much carbon the ocean absorbs from the atmosphere. In this study, we find that a small addition of observations from the Southern Ocean, obtained by autonomous sampling platforms, could significantly improve the reconstructions.
Guilherme L. Torres Mendonça, Julia Pongratz, and Christian H. Reick
Biogeosciences, 21, 1923–1960, https://doi.org/10.5194/bg-21-1923-2024, https://doi.org/10.5194/bg-21-1923-2024, 2024
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We study the timescale dependence of airborne fraction and underlying feedbacks by a theory of the climate–carbon system. Using simulations we show the predictive power of this theory and find that (1) this fraction generally decreases for increasing timescales and (2) at all timescales the total feedback is negative and the model spread in a single feedback causes the spread in the airborne fraction. Our study indicates that those are properties of the system, independently of the scenario.
François Clayer, Jan Erik Thrane, Kuria Ndungu, Andrew King, Peter Dörsch, and Thomas Rohrlack
Biogeosciences, 21, 1903–1921, https://doi.org/10.5194/bg-21-1903-2024, https://doi.org/10.5194/bg-21-1903-2024, 2024
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Determination of dissolved greenhouse gas (GHG) in freshwater allows us to estimate GHG fluxes. Mercuric chloride (HgCl2) is used to preserve water samples prior to GHG analysis despite its environmental and health impacts and interferences with water chemistry in freshwater. Here, we tested the effects of HgCl2, two substitutes and storage time on GHG in water from two boreal lakes. Preservation with HgCl2 caused overestimation of CO2 concentration with consequences for GHG flux estimation.
Helena Rautakoski, Mika Korkiakoski, Jarmo Mäkelä, Markku Koskinen, Kari Minkkinen, Mika Aurela, Paavo Ojanen, and Annalea Lohila
Biogeosciences, 21, 1867–1886, https://doi.org/10.5194/bg-21-1867-2024, https://doi.org/10.5194/bg-21-1867-2024, 2024
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Current and future nitrous oxide (N2O) emissions are difficult to estimate due to their high variability in space and time. Several years of N2O fluxes from drained boreal peatland forest indicate high importance of summer precipitation, winter temperature, and snow conditions in controlling annual N2O emissions. The results indicate increasing year-to-year variation in N2O emissions in changing climate with more extreme seasonal weather conditions.
Matthias Koschorreck, Norbert Kamjunke, Uta Koedel, Michael Rode, Claudia Schuetze, and Ingeborg Bussmann
Biogeosciences, 21, 1613–1628, https://doi.org/10.5194/bg-21-1613-2024, https://doi.org/10.5194/bg-21-1613-2024, 2024
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We measured the emission of carbon dioxide (CO2) and methane (CH4) from different sites at the river Elbe in Germany over 3 days to find out what is more important for quantification: small-scale spatial variability or diurnal temporal variability. We found that CO2 emissions were very different between day and night, while CH4 emissions were more different between sites. Dried out river sediments contributed to CO2 emissions, while the side areas of the river were important CH4 sources.
Odysseas Sifounakis, Edwin Haas, Klaus Butterbach-Bahl, and Maria P. Papadopoulou
Biogeosciences, 21, 1563–1581, https://doi.org/10.5194/bg-21-1563-2024, https://doi.org/10.5194/bg-21-1563-2024, 2024
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We performed a full assessment of the carbon and nitrogen cycles of a cropland ecosystem. An uncertainty analysis and quantification of all carbon and nitrogen fluxes were deployed. The inventory simulations include greenhouse gas emissions of N2O, NH3 volatilization and NO3 leaching from arable land cultivation in Greece. The inventory also reports changes in soil organic carbon and nitrogen stocks in arable soils.
Sarah M. Ludwig, Luke Schiferl, Jacqueline Hung, Susan M. Natali, and Roisin Commane
Biogeosciences, 21, 1301–1321, https://doi.org/10.5194/bg-21-1301-2024, https://doi.org/10.5194/bg-21-1301-2024, 2024
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Landscapes are often assumed to be homogeneous when using eddy covariance fluxes, which can lead to biases when calculating carbon budgets. In this study we report eddy covariance carbon fluxes from heterogeneous tundra. We used the footprints of each flux observation to unmix the fluxes coming from components of the landscape. We identified and quantified hot spots of carbon emissions in the landscape. Accurately scaling with landscape heterogeneity yielded half as much regional carbon uptake.
Justine Trémeau, Beñat Olascoaga, Leif Backman, Esko Karvinen, Henriikka Vekuri, and Liisa Kulmala
Biogeosciences, 21, 949–972, https://doi.org/10.5194/bg-21-949-2024, https://doi.org/10.5194/bg-21-949-2024, 2024
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We studied urban lawns and meadows in the Helsinki metropolitan area, Finland. We found that meadows are more resistant to drought events but that they do not increase carbon sequestration compared with lawns. Moreover, the transformation from lawns to meadows did not demonstrate any negative climate effects in terms of greenhouse gas emissions. Even though social and economic aspects also steer urban development, these results can guide planning to consider carbon-smart options.
Guantao Chen, Edzo Veldkamp, Muhammad Damris, Bambang Irawan, Aiyen Tjoa, and Marife D. Corre
Biogeosciences, 21, 513–529, https://doi.org/10.5194/bg-21-513-2024, https://doi.org/10.5194/bg-21-513-2024, 2024
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We established an oil palm management experiment in a large-scale oil palm plantation in Jambi, Indonesia. We recorded oil palm fruit yield and measured soil CO2, N2O, and CH4 fluxes. After 4 years of treatment, compared with conventional fertilization with herbicide weeding, reduced fertilization with mechanical weeding did not reduce yield and soil greenhouse gas emissions, which highlights the legacy effects of over a decade of conventional management prior to the start of the experiment.
Elizabeth Gachibu Wangari, Ricky Mwangada Mwanake, Tobias Houska, David Kraus, Gretchen Maria Gettel, Ralf Kiese, Lutz Breuer, and Klaus Butterbach-Bahl
Biogeosciences, 20, 5029–5067, https://doi.org/10.5194/bg-20-5029-2023, https://doi.org/10.5194/bg-20-5029-2023, 2023
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Agricultural landscapes act as sinks or sources of the greenhouse gases (GHGs) CO2, CH4, or N2O. Various physicochemical and biological processes control the fluxes of these GHGs between ecosystems and the atmosphere. Therefore, fluxes depend on environmental conditions such as soil moisture, soil temperature, or soil parameters, which result in large spatial and temporal variations of GHG fluxes. Here, we describe an example of how this variation may be studied and analyzed.
Laurie C. Menviel, Paul Spence, Andrew E. Kiss, Matthew A. Chamberlain, Hakase Hayashida, Matthew H. England, and Darryn Waugh
Biogeosciences, 20, 4413–4431, https://doi.org/10.5194/bg-20-4413-2023, https://doi.org/10.5194/bg-20-4413-2023, 2023
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As the ocean absorbs 25% of the anthropogenic emissions of carbon, it is important to understand the impact of climate change on the flux of carbon between the ocean and the atmosphere. Here, we use a very high-resolution ocean, sea-ice, carbon cycle model to show that the capability of the Southern Ocean to uptake CO2 has decreased over the last 40 years due to a strengthening and poleward shift of the southern hemispheric westerlies. This trend is expected to continue over the coming century.
Petr Znachor, Jiří Nedoma, Vojtech Kolar, and Anna Matoušů
Biogeosciences, 20, 4273–4288, https://doi.org/10.5194/bg-20-4273-2023, https://doi.org/10.5194/bg-20-4273-2023, 2023
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We conducted intensive spatial sampling of the hypertrophic fishpond to better understand the spatial dynamics of methane fluxes and environmental heterogeneity in fishponds. The diffusive fluxes of methane accounted for only a minor fraction of the total fluxes and both varied pronouncedly within the pond and over the studied summer season. This could be explained only by the water depth. Wind substantially affected temperature, oxygen and chlorophyll a distribution in the pond.
Sofie Sjögersten, Martha Ledger, Matthias Siewert, Betsabé de la Barreda-Bautista, Andrew Sowter, David Gee, Giles Foody, and Doreen S. Boyd
Biogeosciences, 20, 4221–4239, https://doi.org/10.5194/bg-20-4221-2023, https://doi.org/10.5194/bg-20-4221-2023, 2023
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Permafrost thaw in Arctic regions is increasing methane emissions, but quantification is difficult given the large and remote areas impacted. We show that UAV data together with satellite data can be used to extrapolate emissions across the wider landscape as well as detect areas at risk of higher emissions. A transition of currently degrading areas to fen type vegetation can increase emission by several orders of magnitude, highlighting the importance of quantifying areas at risk.
Cole G. Brachmann, Tage Vowles, Riikka Rinnan, Mats P. Björkman, Anna Ekberg, and Robert G. Björk
Biogeosciences, 20, 4069–4086, https://doi.org/10.5194/bg-20-4069-2023, https://doi.org/10.5194/bg-20-4069-2023, 2023
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Herbivores change plant communities through grazing, altering the amount of CO2 and plant-specific chemicals (termed VOCs) emitted. We tested this effect by excluding herbivores and studying the CO2 and VOC emissions. Herbivores reduced CO2 emissions from a meadow community and altered VOC composition; however, community type had the strongest effect on the amount of CO2 and VOCs released. Herbivores can mediate greenhouse gas emissions, but the effect is marginal and community dependent.
Ole Lessmann, Jorge Encinas Fernández, Karla Martínez-Cruz, and Frank Peeters
Biogeosciences, 20, 4057–4068, https://doi.org/10.5194/bg-20-4057-2023, https://doi.org/10.5194/bg-20-4057-2023, 2023
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Based on a large dataset of seasonally resolved methane (CH4) pore water concentrations in a reservoir's sediment, we assess the significance of CH4 emissions due to reservoir flushing. In the studied reservoir, CH4 emissions caused by one flushing operation can represent 7 %–14 % of the annual CH4 emissions and depend on the timing of the flushing operation. In reservoirs with high sediment loadings, regular flushing may substantially contribute to the overall CH4 emissions.
Matti Räsänen, Risto Vesala, Petri Rönnholm, Laura Arppe, Petra Manninen, Markus Jylhä, Jouko Rikkinen, Petri Pellikka, and Janne Rinne
Biogeosciences, 20, 4029–4042, https://doi.org/10.5194/bg-20-4029-2023, https://doi.org/10.5194/bg-20-4029-2023, 2023
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Fungus-growing termites recycle large parts of dead plant material in African savannas and are significant sources of greenhouse gases. We measured CO2 and CH4 fluxes from their mounds and surrounding soils in open and closed habitats. The fluxes scale with mound volume. The results show that emissions from mounds of fungus-growing termites are more stable than those from other termites. The soil fluxes around the mound are affected by the termite colonies at up to 2 m distance from the mound.
Tim René de Groot, Anne Margriet Mol, Katherine Mesdag, Pierre Ramond, Rachel Ndhlovu, Julia Catherine Engelmann, Thomas Röckmann, and Helge Niemann
Biogeosciences, 20, 3857–3872, https://doi.org/10.5194/bg-20-3857-2023, https://doi.org/10.5194/bg-20-3857-2023, 2023
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This study investigates methane dynamics in the Wadden Sea. Our measurements revealed distinct variations triggered by seasonality and tidal forcing. The methane budget was higher in warmer seasons but surprisingly high in colder seasons. Methane dynamics were amplified during low tides, flushing the majority of methane into the North Sea or releasing it to the atmosphere. Methanotrophic activity was also elevated during low tide but mitigated only a small fraction of the methane efflux.
Frederic Thalasso, Brenda Riquelme, Andrés Gómez, Roy Mackenzie, Francisco Javier Aguirre, Jorge Hoyos-Santillan, Ricardo Rozzi, and Armando Sepulveda-Jauregui
Biogeosciences, 20, 3737–3749, https://doi.org/10.5194/bg-20-3737-2023, https://doi.org/10.5194/bg-20-3737-2023, 2023
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A robust skirt-chamber design to capture and quantify greenhouse gas emissions from peatlands is presented. Compared to standard methods, this design improves the spatial resolution of field studies in remote locations while minimizing intrusion.
Cited articles
Andrews, S.: FastQC: a quality control tool for high throughput sequence
data, available at: http://www.bioinformatics.babraham.ac.uk/projects/fastqc (last access: 29 September 2017), 2010.
Avdeeva, L. and Gvozdev, R.: Effect of gopper goncentration on the growth of
Methylococcus gapsulatus (Strain Ì), Chem. J. Mold., 12, 110–114, https://doi.org/10.19261/cjm.2017.404,
2017.
Barnes, R. O. and Goldberg, E. D.: Methane production and consumption in
anoxic marine sediments, Geology, 4, 297, https://doi.org/10.1130/0091-7613(1976)4<297:MPACIA>2.0.CO;2, 1976.
Bastviken, D., Ejlertsson, J., Sundh, I., and Tranvik, L.: Methane as a
Source of Carbon and Energy for Lake Pelagic Food Webs, Ecology, 84, 969–981, 2003.
Beck, D. A. C., Kalyuzhnaya, M. G., Malfatti, S., Tringe, S., Glavina del
Rio, T., Ivanova, N., Lidstrom, M., and Chistoserdova, L.: A metagenomic
insight into freshwater methane-utilizing communities and evidence for
cooperation between the Methylococcaceae and the Methylophilaceae, PeerJ., 1, e23, https://doi.org/10.7717/peerj.23, 2013.
Boetius, A. and Wenzhöfer, F.: Seafloor oxygen consumption fuelled by
methane from cold seeps, Nat. Geosci., 6, 725–734, https://doi.org/10.1038/ngeo1926,
2013.
Coleman, D. D., Risatti, J. B., and Schoell, M.: Fractionation of carbon and
hydrogen isotopes by methane-oxidizing bacteria, Geochim. Cosmochim. Acta,
45, 1033–1037, https://doi.org/10.1016/0016-7037(81)90129-0, 1981.
Cowen, J. P., Wen, X., and Popp, B. N.: Methane in aging hydrothermal plumes,
Geochim. Cosmochim. Acta, 66, 3563–3571,
https://doi.org/10.1016/S0016-7037(02)00975-4, 2002.
Cox, G. F. N. and Weeks, W. F.: Equations for determining the gas and brine
volumes in sea-ice samples, J. Glaciol., 29, 306–316, 1983.
Crespo-Medina, M., Meile, C. D., Hunter, K. S., Diercks, A.-R., Asper, V.
L., Orphan, V. J., Tavormina, P. L., Nigro, L. M., Battles, J. J., Chanton,
J. P., Shiller, A. M., Joung, D.-J., Amon, R. M. W., Bracco, A., Montoya, J.
P., Villareal, T. A., Wood, A. M., and Joye, S. B.: The rise and fall of
methanotrophy following a deepwater oil-well blowout, Nat. Geosci., 7,
423–427, https://doi.org/10.1038/ngeo2156, 2014.
Damm, E. and Budéus, G.: Fate of vent-derived methane in seawater above
the Håkon Mosby mud volcano (Norwegian Sea), Mar. Chem., 82, 1–11,
https://doi.org/10.1016/S0304-4203(03)00031-8, 2003.
Damm, E., Mackensen, A., Budéus, G., Faber, E., and Hanfland, C.:
Pathways of methane in seawater: Plume spreading in an Arctic shelf
environment (SW-Spitsbergen), Cont. Shelf Res., 25, 1453–1472,
https://doi.org/10.1016/j.csr.2005.03.003, 2005.
Damm, E., Kiene, R. P., Schwarz, J., Falck, E., and Dieckmann, G.: Methane
cycling in Arctic shelf water and its relationship with phytoplankton
biomass and DMSP, Mar. Chem., 109, 45–59,
https://doi.org/10.1016/j.marchem.2007.12.003, 2008.
Damm, E., Helmke, E., Thoms, S., Schauer, U., Nöthig, E., Bakker, K., and
Kiene, R. P.: Methane production in aerobic oligotrophic surface water in
the central Arctic Ocean, Biogeosciences, 7, 1099–1108,
https://doi.org/10.5194/bg-7-1099-2010, 2010.
Damm, E., Rudels, B., Schauer, U., Mau, S., and Dieckmann, G.: Methane exess
in Arctic surface water- triggered by sea ice formation and melting, Sci. Rep., 16, 16179, https://doi.org/10.1038/srep16179, 2015.
de Angelis, M. A. and Lee, C.: Methane production during zooplankton grazing
on marine phytoplankton, Limnol. Oceanogr., 39, 1298–1308,
https://doi.org/10.4319/lo.1994.39.6.1298, 1994.
Deutzmann, J. S., Worner, S., and Schink, B.: Activity and Diversity of
Methanotrophic Bacteria at Methane Seeps in Eastern Lake Constance
Sediments, Appl. Environ. Microbiol., 77, 2573–2581,
https://doi.org/10.1128/AEM.02776-10, 2011.
Dunfield, P. F., Yuryev, A., Senin, P., Smirnova, A. V., Stott, M. B., Hou,
S., Ly, B., Saw, J. H., Zhou, Z., Ren, Y., Wang, J., Mountain, B. W., Crowe,
M. A., Weatherby, T. M., Bodelier, P. L. E., Liesack, W., Feng, L., Wang, L., and Alam, M.: Methane oxidation by an extremely acidophilic bacterium of the
phylum Verrucomicrobia, Nature, 450, 879–882,
https://doi.org/10.1038/nature06411, 2007.
Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C., and Knight, R.:
UCHIME improves sensitivity and speed of chimera detection, Bioinformatics,
27, 2194–2200, https://doi.org/10.1093/bioinformatics/btr381, 2011.
Eronen-Rasimus, E., Luhtanen, A.-M., Rintala, J.-M., Delille, B., Dieckmann,
G., Karkman, A., and Tison, J.-L.: An active bacterial community linked to
high chl-a concentrations in Antarctic winter-pack ice and evidence for the
development of an anaerobic sea-ice bacterial community, ISME J., 11, 2345–2355, https://doi.org/10.1038/ismej.2017.96, 2017.
Etminan, M., Myhre, G., Highwood, E. J., and Shine, K. P.: Radiative forcing
of carbon dioxide, methane, and nitrous oxide: A significant revision of the
methane radiative forcing: Greenhouse Gas Radiative Forcing, Geophys. Res.
Lett., 43, 12,614–12,623, https://doi.org/10.1002/2016GL071930, 2016.
Eyice, Ö., Namura, M., Chen, Y., Mead, A., Samavedam, S., and
Schäfer, H.: SIP metagenomics identifies uncultivated Methylophilaceae
as dimethylsulphide degrading bacteria in soil and lake sediment, ISME J.,
9, 2336–2348, https://doi.org/10.1038/ismej.2015.37, 2015.
Fish, J. A., Chai, B., Wang, Q., Sun, Y., Brown, C. T., Tiedje, J. M., and
Cole, J. R.: FunGene: the functional gene pipeline and repository, Front.
Microbiol., 4, 291, https://doi.org/10.3389/fmicb.2013.00291, 2013.
Florez-Leiva, L., Tarifeño, E., Cornejo, M., Kiene, R., and Farías,
L.: High production of nitrous oxide (N2O), methane (CH4
and dimethylsulphoniopropionate (DMSP) in a massive marine phytoplankton
culture, Biogeosciences Discuss., 7, 6705–6723,
https://doi.org/10.5194/bgd-7-6705-2010, 2010.
Formolo, M.: The microbial production of methane and other volatile
hydrocarbons, in: Handbook of Hydrocarbon and Lipid Microbiology, edited by:
Timmis, K. N., Springer Berlin Heidelberg, Berlin, Heidelberg, 113–126, available at: http://link.springer.com/10.1007/978-3-540-77587-4_6 (last access: 5 January 2017), 2010.
Gentz, T., Damm, E., Schneider von Deimling, J., Mau, S., McGinnis, D. F., and Schlüter, M.: A water column study of methane around gas flares
located at the West Spitsbergen continental margin, Cont. Shelf Res., 72,
107–118, https://doi.org/10.1016/j.csr.2013.07.013, 2014.
Golden, K. M., Ackley, S. F., and Lytle, V. I.: The Percolation Phase
Transition in Sea Ice, Science, 282, 2238–2241,
https://doi.org/10.1126/science.282.5397.2238, 1998.
Grant, N. J. and Whiticar, M. J.: Stable carbon isotopic evidence for
methane oxidation in plumes above Hydrate Ridge, Cascadia Oregon Margin.,
Glob. Biogeochem. Cycles, 16, 71–1–71–13, https://doi.org/10.1029/2001GB001851,
2002.
Hakemian, A. S. and Rosenzweig, A. C.: The Biochemistry of Methane
Oxidation, Annu. Rev. Biochem., 76, 223–241,
https://doi.org/10.1146/annurev.biochem.76.061505.175355, 2007.
Hansman, R. L., Thurber, A. R., Levin, L. A., and Aluwihare, L. I.: Methane
fates in the benthos and water column at cold seep sites along the
continental margin of Central and North America, Deep Sea Res. Part
Oceanogr. Res. Pap., 120, 122–131, https://doi.org/10.1016/j.dsr.2016.12.016, 2017.
Hanson, R. S. and Hanson, T. E.: Methanotrophic bacteria, Microbiol. Rev.,
60, 439–471, 1996.
Heeschen, K. U., Keir, R. S., Rehder, G., Klatt, O., and Suess, E.: Methane
dynamics in the Weddell Sea determined via stable isotope ratios and CFC-11,
Glob. Biogeochem. Cycles, 18, GB2012, https://doi.org/10.1029/2003GB002151, 2004.
Holmes, A. J., Roslev, P., McDonald, I. R., Iversen, N., Henriksen, K., and
Murrell, J. C.: Characterization of Methanotrophic Bacterial Populations in
Soils Showing Atmospheric Methane Uptake, Appl. Environ. Microbiol., 65,
3312–3318, 1999.
Hutchens, E., Radajewski, S., Dumont, M. G., McDonald, I. R., and Murrell, J.
C.: Analysis of methanotrophic bacteria in Movile Cave by stable isotope
probing: Methanotrophs in Movile Cave, Environ. Microbiol., 6, 111–120,
https://doi.org/10.1046/j.1462-2920.2003.00543.x, 2003.
IPCC: Climate Change 2014: Mitigation of Climate Change. Contribution of
Working Group III to the Fifth Assessment Report of the Intergovernmental
Panel on Climate Change, Edenhofer, O., Pichs-Madruga, R., Sokona, Y.,
Farahani, E., Kadner, S., Seyboth, K., Adler, A., Baum, I., Brunner, S.,
Eickemeier, P., Kriemann, B., Savolainen, J., Schlömer, S., von Stechow,
C., Zwickel, T., Minx, J. C. (Eds.), Cambridge University Press, Cambridge,
UK and New York, NY, USA., 2014.
Jensen, S., Neufeld, J. D., Birkeland, N.-K., Hovland, M., and Murrell, J.
C.: Methane assimilation and trophic interactions with marine
Methylomicrobium in deep-water coral reef sediment off the coast of Norway:
Deep-water coral reef methanotrophy, FEMS Microbiol. Ecol., 66, 320–330,
https://doi.org/10.1111/j.1574-6941.2008.00575.x, 2008.
Karl, D. M., Beversdorf, L., Björkman, K. M., Church, M. J., Martinez,
A., and Delong, E. F.: Aerobic production of methane in the sea, Nat.
Geosci., 1, 473–478, 2008.
Katoh, K. and Standley, D. M.: MAFFT Multiple Sequence Alignment Software
Version 7: Improvements in Performance and Usability, Mol. Biol. Evol.,
30, 772–780, https://doi.org/10.1093/molbev/mst010, 2013.
Keir, R. S., Schmale, O., Seifert, R., and Sültenfuß, J.: Isotope
fractionation and mixing in methane plumes from the Logatchev hydrothermal
field, Geochem. Geophys. Geosy., 10, Q05005, https://doi.org/10.1029/2009GC002403,
2009.
Kessler, J. D., Valentine, D. L., Redmond, M. C., Du, M., Chan, E. W.,
Mendes, S. D., Quiroz, E. W., Villanueva, C. J., Shusta, S. S., Werra, L.
M., Yvon-Lewis, S. A., and Weber, T. C.: A Persistent Oxygen Anomaly Reveals
the Fate of Spilled Methane in the Deep Gulf of Mexico, Science, 331,
312–315, https://doi.org/10.1126/science.1199697, 2011.
Kirst, G. O., Thiel, C., Wolff, H., Nothnagel, J., Wanzek, M., and Ulmke, R.:
Dimethylsulfoniopropionate (DMSP) in ice-algae and its possible biological
role, Mar. Chem., 35, 381–388, https://doi.org/10.1016/S0304-4203(09)90030-5,
1991.
Knief, C.: Diversity and Habitat Preferences of Cultivated and Uncultivated
Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker,
Front. Microbiol., 6, 1346, https://doi.org/10.3389/fmicb.2015.01346, 2015.
Knittel, K. and Boetius, A.: Anaerobic oxidation of methane: Progress with
an unknown process, Annu. Rev. Microbiol., 63, 311–334,
https://doi.org/10.1146/annurev.micro.61.080706.093130, 2009.
Krause, S. M. B., Johnson, T., Samadhi Karunaratne, Y., Fu, Y., Beck, D. A.
C., Chistoserdova, L., and Lidstrom, M. E.: Lanthanide-dependent
cross-feeding of methane-derived carbon is linked by microbial community
interactions, Proc. Natl. Acad. Sci., 114, 358–363,
https://doi.org/10.1073/pnas.1619871114, 2017.
Kvenvolden, K. A. and Rogers, B. W.: Gaia's breath – global methane
exhalations, Mar. Pet. Geol., 22, 579–590,
https://doi.org/10.1016/j.marpetgeo.2004.08.004, 2005.
Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P.
A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A., Lopez, R.,
Thompson, J. D., Gibson, T. J., and Higgins, D. G.: Clustal W and Clustal X
version 2.0, Bioinformatics, 23, 2947–2948,
https://doi.org/10.1093/bioinformatics/btm404, 2007.
Lecher, A. L., Kessler, J., Sparrow, K., Garcia-Tigreros Kodovska, F.,
Dimova, N., Murray, J., Tulaczyk, S., and Paytan, A.: Methane transport
through submarine groundwater discharge to the North Pacific and Arctic
Ocean at two Alaskan sites, Limnol. Oceanogr., 61, S344–S355,
https://doi.org/10.1002/lno.10118, 2016.
Leifer, I. and Patro, R. K.: The bubble mechanism for methane transport from
the shallow sea bed to the surface: A review and sensitivity study, Cont.
Shelf Res., 22, 2409–2428, https://doi.org/10.1016/S0278-4343(02)00065-1, 2002.
Leonte, M., Kessler, J. D., Kellermann, M. Y., Arrington, E. C., Valentine,
D. L., and Sylva, S. P.: Rapid rates of aerobic methane oxidation at the
feather edge of gas hydrate stability in the waters of Hudson Canyon, US
Atlantic Margin, Geochim. Cosmochim. Acta, 204, 375–387,
https://doi.org/10.1016/j.gca.2017.01.009, 2017.
Loose, B., Schlosser, P., Perovich, D., Ringelberg, D., Ho, D. T.,
Takahashi, T., Richter-Menge, J., Reynolds, C. M., Mcgillis, W. R., and
Tison, J.-L.: Gas diffusion through columnar laboratory sea ice:
implications for mixed-layer ventilation of CO2 in the seasonal ice
zone., Tellus B, 63, 23–39, https://doi.org/10.1111/j.1600-0889.2010.00506.x, 2011.
Lorenson, T. D. and Kvenvolden, K. A.: Methane in coastal seawater, sea ice
and bottom sediments, Beaufort Sea, Alaska: U.S. Geological Survey Open-File
Report 95–70, US Geological Survey, Menlo Park, CA, 1995.
Lorenson, T. D., Greinert, J., and Coffin, R. B.: Dissolved methane in the
Beaufort Sea and the Arctic Ocean, 1992–2009; sources and atmospheric flux:
Dissolved methane in the Beaufort Sea and the Arctic Ocean, Limnol.
Oceanogr., 61, S300–S323, https://doi.org/10.1002/lno.10457, 2016.
Love, M. I., Huber, W., and Anders, S.: Moderated estimation of fold change
and dispersion for RNA-seq data with DESeq2, Genome Biol., 15, 550, https://doi.org/10.1186/s13059-014-0550-8, 2014.
Lüke, C. and Frenzel, P.: Potential of pmoA Amplicon Pyrosequencing for
Methanotroph Diversity Studies, Appl. Environ. Microbiol., 77,
6305–6309, https://doi.org/10.1128/AEM.05355-11, 2011.
Lyew, D. and Guiot, S.: Effects of aeration and organic loading rates on
degradation of trichloroethylene in a methanogenic-methanotrophic coupled
reactor, Appl. Microbiol. Biotechnol., 61, 206–213,
https://doi.org/10.1007/s00253-003-1224-8, 2003.
Magen, C., Lapham, L. L., Pohlman, J. W., Marshall, K., Bosman, S., Casso,
M., and Chanton, J. P.: A simple headspace equilibration method for measuring
dissolved methane, Limnol. Oceanogr. Methods, 12, 637–650,
https://doi.org/10.4319/lom.2014.12.637, 2014.
Mau, S., Blees, J., Helmke, E., Niemann, H., and Damm, E.: Vertical
distribution of methane oxidation and methanotrophic response to elevated
methane concentrations in stratified waters of the Arctic fjord Storfjorden
(Svalbard, Norway), Biogeosciences, 10, 6267–6278,
https://doi.org/10.5194/bg-10-6267-2013, 2013.
Mau, S., Römer, M., Torres, M. E., Bussmann, I., Pape, T., Damm, E.,
Geprägs, P., Wintersteller, P., Hsu, C.-W., Loher, M., and Bohrmann, G.:
Widespread methane seepage along the continental margin off Svalbard – from
Bjørnøya to Kongsfjorden, Sci. Rep., 7, 42997, https://doi.org/10.1038/srep42997,
2017.
McDonald, I. R., Bodrossy, L., Chen, Y., and Murrell, J. C.: Molecular
Ecology Techniques for the Study of Aerobic Methanotrophs, Appl. Environ.
Microbiol., 74, 1305–1315, https://doi.org/10.1128/AEM.02233-07, 2008.
McKinney, C. R., McCrea, J. M., Epstein, S., Allen, H. A., and Urey, H. C.:
Improvements in mass spectrometers for the measurement of small differences
in isotope abundance ratios, Rev. Sci. Instrum., 21, 724,
https://doi.org/10.1063/1.1745698, 1950.
McMurdie, P. J. and Holmes, S.: phyloseq: An R Package for Reproducible
Interactive Analysis and Graphics of Microbiome Census Data, PLoS ONE, 8,
e61217, https://doi.org/10.1371/journal.pone.0061217, 2013.
Murrell, J. C.: The aerobic methane oxidizing bacteria (Methanotrophs), in: Handbook of Hydrocarbon and Lipid Microbiology,
edited by: Timmis, K. N., Springer Berlin Heidelberg, Berlin, Heidelberg, 1953–1966,
available at: http://link.springer.com/10.1007/978-3-540-77587-4_143 (last access: 5 January 2017), 2010.
Myhre, C. L., Ferré, B., Platt, S. M., Silyakova, A., Hermansen, O.,
Allen, G., Pisso, I., Schmidbauer, N., Stohl, A., Pitt, J., Jansson, P.,
Greinert, J., Percival, C., Fjaeraa, A. M., O'Shea, S. J., Gallagher, M., Le
Breton, M., Bower, K. N., Bauguitte, S. J. B., Dalsøren, S.,
Vadakkepuliyambatta, S., Fisher, R. E., Nisbet, E. G., Lowry, D., Myhre, G.,
Pyle, J. A., Cain, M., and Mienert, J.: Extensive release of methane from
Arctic seabed west of Svalbard during summer 2014 does not influence the
atmosphere: CH4 From Arctic Ocean to the Atmosphere, Geophys. Res.
Lett., 43, 4624–4631, https://doi.org/10.1002/2016GL068999, 2016.
Nelson, M. C., Morrison, H. G., Benjamino, J., Grim, S. L., and Graf, J.:
Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene
Amplicon Surveys, PLoS ONE, 9, e94249, https://doi.org/10.1371/journal.pone.0094249,
2014.
Oksanen, J., Blanchet, F. G., Friendly, M., Kindt, R., Legendre, P.,
McGlinn, D., Minchin, P. R., O'Hara, R. B., Simpson, G. L., Solymos, P.,
Stevens, M. H. H., Szoecs, E., and Wagner, H.: vegan: Community Ecology
Package, available at: https://CRAN.R-project.org/package=vegan (last access: 27 May 2018),
2017.
Oremland, R. S.: Methanogenic activity in plankton samples and fish
intestines: A mechanism for in situ methanogenesis in oceanic surface
waters, Limnol. Oceanogr., 24, 1136–1141, https://doi.org/10.4319/lo.1979.24.6.1136,
1979.
Overduin, P. P., Westermann, S., Yoshikawa, K., Haberlau, T., Romanovsky, V., and Wetterich, S.: Geoelectric observations of the degradation of nearshore
submarine permafrost at Barrow (Alaskan Beaufort Sea), J. Geophys. Res.
Earth Surf., 117, F02004, https://doi.org/10.1029/2011JF002088, 2012.
Pol, A., Heijmans, K., Harhangi, H. R., Tedesco, D., Jetten, M. S. M., and Op
den Camp, H. J. M.: Methanotrophy below pH 1 by a new Verrucomicrobia
species, Nature, 450, 874–878, https://doi.org/10.1038/nature06222, 2007.
Preuss, I., Knoblauch, C., Gebert, J., and Pfeiffer, E.-M.: Improved
quantification of microbial CH4 oxidation efficiency in arctic wetland soils
using carbon isotope fractionation, Biogeosciences, 10, 2539–2552,
https://doi.org/10.5194/bg-10-2539-2013, 2013.
Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P.,
Peplies, J., and Glockner, F. O.: The SILVA ribosomal RNA gene database
project: improved data processing and web-based tools, Nucleic Acids Res.,
41, D590–D596, https://doi.org/10.1093/nar/gks1219, 2013.
R CoreTeam: R: A language and Environment for Statistical Computing,
available at: http://www.r-project.org/ (last access: 27 May 2018), 2015.
Rahalkar, M., Deutzmann, J., Schink, B. and Bussmann, I.: Abundance and
Activity of Methanotrophic Bacteria in Littoral and Profundal Sediments of
Lake Constance (Germany), Appl. Environ. Microbiol., 75, 119–126,
https://doi.org/10.1128/AEM.01350-08, 2009.
Redmond, M. C., Valentine, D. L., and Sessions, A. L.: Identification of
Novel Methane-, Ethane-, and Propane-Oxidizing Bacteria at Marine
Hydrocarbon Seeps by Stable Isotope Probing, Appl. Environ. Microbiol.,
76, 6412–6422, https://doi.org/10.1128/AEM.00271-10, 2010.
Reeburgh, W. S.: Methane consumption in Cariaco Trench waters and sediments,
Earth Planet. Sci. Lett., 28, 337–344, https://doi.org/10.1016/0012-821X(76)90195-3,
1976.
Reeburgh, W. S.: Oceanic methane biogeochemistry, Chem. Rev., 107, 486–513,
2007.
Reeburgh, W. S., Ward, B. B., Whalen, S. C., Sandbeck, K. A., Kilpatrickt,
K. A., and Kerkhof, L. J.: Black Sea methane geochemistry, Deep Sea Res. Part
Oceanogr. Res. Pap., 38, S1189–S1210, https://doi.org/10.1016/S0198-0149(10)80030-5,
1991.
Repeta, D. J., Ferron, S., Sosa, O. A., Johnson, C. G., Repeta, L. D.,
Acker, M., DeLong, E. F., and Karl, D. M.: Marine methane paradox explained
by bacterial degradation of dissolved organic matter, Nat. Geosci, 9,
884–887, 2016.
Rice, P., Longden, I., and Bleasby, A.: EMBOSS: The European Molecular
Biology Open Software Suite, Trends Genet., 16, 276–277,
https://doi.org/10.1016/S0168-9525(00)02024-2, 2000.
Roslev, P., Iversen, N., and Henriksen, K.: Oxidation and assimilation of
atmospheric methane by soil methane oxidizers., Appl. Environ. Microbiol.,
63, 874–880, 1997.
Saidi-Mehrabad, A., He, Z., Tamas, I., Sharp, C. E., Brady, A. L., Rochman,
F. F., Bodrossy, L., Abell, G. C., Penner, T., Dong, X., Sensen, C. W., and
Dunfield, P. F.: Methanotrophic bacteria in oilsands tailings ponds of
northern Alberta, ISME J., 7, 908–921, https://doi.org/10.1038/ismej.2012.163, 2013.
Sansone, F. J., Popp, B. N., Gasc, A., Graham, A. W., and Rust, T. M.: Highly
elevated methane in the eastern tropical North Pacific and associated
isotopically enriched fluxes to the atmosphere, Geophys. Res. Lett., 28,
4567–4570, https://doi.org/10.1029/2001GL013460, 2001.
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M.,
Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., Robinson,
C. J., Sahl, J. W., Stres, B., Thallinger, G. G., Van Horn, D. J., and Weber,
C. F.: Introducing mothur: Open-Source, Platform-Independent,
Community-Supported Software for Describing and Comparing Microbial
Communities, Appl. Environ. Microbiol., 75, 7537–7541,
https://doi.org/10.1128/AEM.01541-09, 2009.
Schmale, O., Leifer, I., Deimling, J. S. v., Stolle, C., Krause, S.,
Kießlich, K., Frahm, A., and Treude, T.: Bubble Transport Mechanism:
Indications for a gas bubble-mediated inoculation of benthic methanotrophs
into the water column, Cont. Shelf Res., 103, 70–78,
https://doi.org/10.1016/j.csr.2015.04.022, 2015.
Semrau, J. D., DiSpirito, A. A., and Yoon, S.: Methanotrophs and copper, FEMS
Microbiol. Rev., 34, 496–531, https://doi.org/10.1111/j.1574-6976.2010.00212.x,
2010.
Shakhova, N., Semiletov, I., Salyuk, A., Yusupov, V., Kosmach, D., and
Gustafsson, Ö.: Extensive methane venting to the atmosphere from
sediments of the East Siberian Arctic shelf, Science, 327, 1246–1250,
https://doi.org/10.1126/science.1182221, 2010.
Steinle, L., Graves, C. A., Treude, T., Ferré, B., Biastoch, A.,
Bussmann, I., Berndt, C., Krastel, S., James, R. H., Behrens, E.,
Böning, C. W., Greinert, J., Sapart, C.-J., Scheinert, M., Sommer, S.,
Lehmann, M. F., and Niemann, H.: Water column methanotrophy controlled by a
rapid oceanographic switch, Nat. Geosci., 8, 378–382,
https://doi.org/10.1038/ngeo2420, 2015.
Steinle, L., Schmidt, M., Bryant, L., Haeckel, M., Linke, P., Sommer, S.,
Zopfi, J., Lehmann, M. F., Treude, T., and Niemannn, H.: Linked sediment and
water-column methanotrophy at a man-made gas blowout in the North Sea:
Implications for methane budgeting in seasonally stratified shallow seas:
Linked sediment and water methanotrophy, Limnol. Oceanogr., 61,
S367–S386, https://doi.org/10.1002/lno.10388, 2016.
Stoddard, S. F., Smith, B. J., Hein, R., Roller, B. R. K., and Schmidt, T.
M.: rrnDB: improved tools for interpreting rRNA gene abundance in bacteria
and archaea and a new foundation for future development, Nucleic Acids Res.,
43, D593–D598, https://doi.org/10.1093/nar/gku1201, 2015.
Strong, P. J., Xie, S., and Clarke, W. P.: Methane as a Resource: Can the
Methanotrophs Add Value?, Environ. Sci. Technol., 49, 4001–4018,
https://doi.org/10.1021/es504242n, 2015.
Tanaka, K., Takesue, N., Nishioka, J., Kondo, Y., Ooki, A., Kuma, K.,
Hirawake, T., and Yamashita, Y.: The conservative behavior of dissolved
organic carbon in surface waters of the southern Chukchi Sea, Arctic Ocean,
during early summer, Sci. Rep., 6, 34123, https://doi.org/10.1038/srep34123, 2016.
Tavormina, P. L., Ussler, W., and Orphan, V. J.: Planktonic and
Sediment-Associated Aerobic Methanotrophs in Two Seep Systems along the
North American Margin, Appl. Environ. Microbiol., 74, 3985–3995,
https://doi.org/10.1128/AEM.00069-08, 2008.
Thomas, D. N. and Dieckmann, G. S.: Antarctic Sea Ice–a Habitat for
Extremophiles, Science, 295, 641–644, https://doi.org/10.1126/science.1063391,
2002.
Tsunogai, U., Yoshida, N., Ishibashi, J., and Gamo, T.: Carbon isotopic
distribution of methane in deep-sea hydrothermal plume, Myojin Knoll
Caldera, Izu-Bonin arc: implications for microbial methane oxidation in the
oceans and applications to heat flux estimation, Geochim. Cosmochim. Acta,
64, 2439–2452, https://doi.org/10.1016/S0016-7037(00)00374-4, 2000.
Uhlig, C. and Loose, B.: Using stable isotopes and gas concentrations for
independent constraints on microbial methane oxidation at Arctic Ocean
temperatures: Methane oxidation rates from stable isotopes, Limnol.
Oceanogr. Methods, 15, 737–751, https://doi.org/10.1002/lom3.10199, 2017a.
Uhlig, C. and Loose, B.: Methane oxidation in Arctic seawater, Utqiagvik, Alaska.
PANGAEA, https://doi.org/10.1594/PANGAEA.874893, 2017b.
Uhlig, C. and Loose, B.: Methane concentration and stable
isotope ratios in seawater and sea ice, Utqiagvik shelf, Alaska, PANGAEA,
available at: https://doi.pangaea.de/10.1594/PANGAEA.889726 (last access: 27 May 2018), 2018.
Valentine, D. L., Blanton, D. C., Reeburgh, W. S., and Kastner, M.: Water
column methane oxidation adjacent to an area of active hydrate dissociation,
Eel river Basin, Geochim. Cosmochim. Acta, 65, 2633–2640,
https://doi.org/10.1016/S0016-7037(01)00625-1, 2001.
Valentine, D. L., Kessler, J. D., Redmond, M. C., Mendes, S. D., Heintz, M.
B., Farwell, C., Hu, L., Kinnaman, F. S., Yvon-Lewis, S., Du, M., Chan, E.
W., Tigreros, F. G., and Villanueva, C. J.: Propane respiration jump-starts
microbial response to a deep oil spill, Science, 330, 208–211,
https://doi.org/10.1126/science.1196830, 2010.
Verdugo, J., Damm, E., Snoeijs, P., Díez, B., and Farías, L.:
Climate relevant trace gases (N2O and CH4) in the Eurasian Basin
(Arctic Ocean), Deep Sea Res. Part Oceanogr. Res. Pap., 117, 84–94,
https://doi.org/10.1016/j.dsr.2016.08.016, 2016.
Vrede, K., Heldal, M., Norland, S., and Bratbak, G.: Elemental Composition
(C, N, P) and Cell Volume of Exponentially Growing and Nutrient-Limited
Bacterioplankton, Appl. Environ. Microbiol., 68, 2965–2971,
https://doi.org/10.1128/AEM.68.6.2965-2971.2002, 2002.
Wang, S. W., Budge, S. M., Gradinger, R. R., Iken, K., and Wooller, M. J.:
Fatty acid and stable isotope characteristics of sea ice and pelagic
particulate organic matter in the Bering Sea: tools for estimating sea ice
algal contribution to Arctic food web production, Oecologia, 174,
699–712, https://doi.org/10.1007/s00442-013-2832-3, 2014.
Whiticar, M. J.: Carbon and hydrogen isotope systematics of bacterial
formation and oxidation of methane, Chem. Geol., 161, 291–314,
https://doi.org/10.1016/S0009-2541(99)00092-3, 1999.
Yamamoto, S., Alcauskas, J. B., and Crozier, T. E.: Solubility of methane in
distilled water and seawater, J. Chem. Eng. Data, 21, 78–80,
https://doi.org/10.1021/je60068a029, 1976.
Zhivotchenko, A. G., Nikonova, E. S., and Jørgensen, M. H.: Copper effect
on the growth kinetics of Methylococcus capsulatus (bath), Biotechnol. Tech., 9, 163–168,
https://doi.org/10.1007/BF00157072, 1995.
Zhou, J., Tison, J.-L., Carnat, G., Geilfus, N.-X., and Delille, B.: Physical
controls on the storage of methane in landfast sea ice, The Cryosphere, 8,
1019–1029, https://doi.org/10.5194/tc-8-1019-2014, 2014.
Short summary
To improve global budgets of the greenhouse gas methane, we studied methane consumption in sea-ice-covered Arctic seawater. The microbes using methane were present in abundances < 1 % in the seawater and sea ice. They consumed methane at rates increasing with increasing methane concentrations. In addition, differences in the methane concentrations and in the types of microbes between the ice and water indicate different microbial or physical processes in the two environments.
To improve global budgets of the greenhouse gas methane, we studied methane consumption in...
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