Articles | Volume 15, issue 11
https://doi.org/10.5194/bg-15-3311-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-15-3311-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Methane-oxidizing seawater microbial communities from an Arctic shelf
Graduate School of Oceanography, University of Rhode Island,
Narragansett, RI 02882, USA
currently at: Alfred Wegener Institute Helmholtz Centre for Polar and
Marine Research, 27570 Bremerhaven, Germany
John B. Kirkpatrick
Graduate School of Oceanography, University of Rhode Island,
Narragansett, RI 02882, USA
The Evergreen State College, Olympia, WA 98505, USA
Steven D'Hondt
Graduate School of Oceanography, University of Rhode Island,
Narragansett, RI 02882, USA
Brice Loose
Graduate School of Oceanography, University of Rhode Island,
Narragansett, RI 02882, USA
Related authors
No articles found.
Alessandra D'Angelo, Cynthia Garcia-Eidell, Zak Kerrigan, Jacob Strock, Frances Crable, Nikolas VanKeersbilck, Humair Raziuddin, Theressa Ewa, Samira Umar, Andrew L. King, Miquel Gonzelez-Meler, and Brice Loose
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-157, https://doi.org/10.5194/bg-2023-157, 2023
Manuscript not accepted for further review
Short summary
Short summary
In summer 2019, the Northwest Passage Project explored the Canadian Arctic Archipelago (CAA). Our study revealed methane oversaturation in upper CAA waters, driven by meltwater, turbidity, and specific microbial activity. It highlights the need to distinguish active methane zones. Western CAA showed higher methane activity, while the east had lower levels due to Atlantic Water influence. These findings contribute to understanding Arctic methane dynamics and its climate change implications.
Alessandra D'Angelo, Cynthia Garcia-Eidell, Zak Kerrigan, Jacob Strock, Frances Crable, Nikolas VanKeersbilck, Humair Raziuddin, Theressa Ewa, Samira Umar, Andrew L. King, Miquel Gonzelez-Meler, and Brice Loose
EGUsphere, https://doi.org/10.5194/egusphere-2023-74, https://doi.org/10.5194/egusphere-2023-74, 2023
Preprint archived
Short summary
Short summary
In this paper, we seek to further elucidate the methane budget in the Northwest Passage, and detect its main association with the environmental features and the biogenic control within the water column and the sea ice. Collectively, we can divide the entire study area into: (a) sea ice, with methane excess; (b) meltwaters, characterized by methane oxidations in oversaturated waters; (c) Pacific waters, with high methane oxidation rates; (d) Atlantic regime, mostly abiotic for methane.
Alessandra D'Angelo, Cynthia Garcia-Eidell, Christopher Knowlton, Andrea Gingras, Holly Morin, Dwight Coleman, Jessica Kaelblein, Humair Raziuddin, Nikolas VanKeersbilck, Tristan J. Rivera, Krystian Kopka, Yoana Boleaga, Korenna Estes, Andrea Nodal, Ericka Schulze, Theressa Ewa, Mirella Shaban, Samira Umar, Rosanyely Santana, Jacob Strock, Erich Gruebel, Michael Digilio, Rick Ludkin, Donglai Gong, Zak Kerrigan, Mia Otokiak, Frances Crable, Nicole Trenholm, Triston Millstone, Kevin Montenegro, Melvin Kim, Gibson Porter, Tomer Ketter, Max Berkelhammer, Andrew L. King, Miguel Angel Gonzalez-Meler, and Brice Loose
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2022-306, https://doi.org/10.5194/essd-2022-306, 2022
Manuscript not accepted for further review
Short summary
Short summary
The Canadian Arctic Archipelago (CAA) is characterized by advection from the Pacific (PW) and Atlantic waters (AW), ice melt, local river discharge and net precipitation. In a changing Arctic, it is crucial to monitor the hydrography of this Region. We combined chemical and physical parameters into an Optimal MultiParameter Analysis, for the detection of the source water fractions characterizing the CAA. The outcome was effective about the PW and AW, and discriminated the meltwaters origin.
Susumu Umino, Gregory F. Moore, Brian Boston, Rosalind Coggon, Laura Crispini, Steven D'Hondt, Michael O. Garcia, Takeshi Hanyu, Frieder Klein, Nobukazu Seama, Damon A. H. Teagle, Masako Tominaga, Mikiya Yamashita, Michelle Harris, Benoit Ildefonse, Ikuo Katayama, Yuki Kusano, Yohey Suzuki, Elizabeth Trembath-Reichert, Yasuhiro Yamada, Natsue Abe, Nan Xiao, and Fumio Inagaki
Sci. Dril., 29, 69–82, https://doi.org/10.5194/sd-29-69-2021, https://doi.org/10.5194/sd-29-69-2021, 2021
Lisa Thompson, Madison Smith, Jim Thomson, Sharon Stammerjohn, Steve Ackley, and Brice Loose
The Cryosphere, 14, 3329–3347, https://doi.org/10.5194/tc-14-3329-2020, https://doi.org/10.5194/tc-14-3329-2020, 2020
Short summary
Short summary
The offshore winds around Antarctica can reach hurricane strength and produce intense cooling, causing the surface ocean to form a slurry of seawater and ice crystals. For the first time, we observed a buildup of heat and salt in the surface ocean, caused by loose ice crystal formation. We conclude that up to 1 m of ice was formed per day by the intense cooling, suggesting that unconsolidated crystals may be an important part of the total freezing that happens around Antarctica.
Cara C. Manning, Rachel H. R. Stanley, David P. Nicholson, Brice Loose, Ann Lovely, Peter Schlosser, and Bruce G. Hatcher
Biogeosciences, 16, 3351–3376, https://doi.org/10.5194/bg-16-3351-2019, https://doi.org/10.5194/bg-16-3351-2019, 2019
Short summary
Short summary
We measured rates of biological activity and gas exchange in a Canadian estuary during ice melt. We quantified gas exchange using inert, deliberately released tracers and found that the gas transfer rate at > 90 % ice cover was 6 % of the rate for nearly ice-free conditions. We measured oxygen concentration and isotopic composition and used the data to detect changes in the rates of photosynthesis and respiration (autotrophy and heterotrophy) as the ice melted.
Arash Bigdeli, Brice Loose, An T. Nguyen, and Sylvia T. Cole
Ocean Sci., 13, 61–75, https://doi.org/10.5194/os-13-61-2017, https://doi.org/10.5194/os-13-61-2017, 2017
Short summary
Short summary
We evaluated if numerical model output helps us to better estimate the physical forcing that drives the air–sea gas exchange rate (k) in sea ice zones. We used 36, 9 and 2 km horizontal resolution of regional MITgcm configuration with fine vertical spacing to evaluate the capability of the model to reproduce sea ice velocity, concentration, mixed layer depth and water velocities. We found that even the coarse-resolution model can make a modest contribution to gas exchange parameterization.
Related subject area
Biogeochemistry: Greenhouse Gases
Influence of wind strength and direction on diffusive methane fluxes and atmospheric methane concentrations above the North Sea
Using eddy covariance observations to determine the carbon sequestration characteristics of subalpine forests in the Qinghai–Tibet Plateau
Isotopomer labeling and oxygen dependence of hybrid nitrous oxide production
The emission of CO from tropical rainforest soils
Modelling CO2 and N2O emissions from soils in silvopastoral systems of the West African Sahelian band
A case study on topsoil removal and rewetting for paludiculture: effect on biogeochemistry and greenhouse gas emissions from Typha latifolia, Typha angustifolia, and Azolla filiculoides
Assessing improvements in global ocean pCO2 machine learning reconstructions with Southern Ocean autonomous sampling
Timescale dependence of airborne fraction and underlying climate–carbon-cycle feedbacks for weak perturbations in CMIP5 models
Technical note: Preventing CO2 overestimation from mercuric or copper(II) chloride preservation of dissolved greenhouse gases in freshwater samples
Exploring temporal and spatial variation of nitrous oxide flux using several years of peatland forest automatic chamber data
Diurnal versus spatial variability of greenhouse gas emissions from an anthropogenically modified lowland river in Germany
Regional assessment and uncertainty analysis of carbon and nitrogen balances at cropland scale using the ecosystem model LandscapeDNDC
Physicochemical Perturbation Increases Nitrous Oxide Production in Soils and Sediments
Resolving heterogeneous fluxes from tundra halves the growing season carbon budget
Interannual and seasonal variability of the air-sea CO2 exchange at Utö in the coastal region of the Baltic Sea
Seasonal dynamics and regional distribution patterns of CO2 and CH4 in the north-eastern Baltic Sea
Carbon degradation and mobilisation potentials of thawing permafrost peatlands in Northern Norway
Lawns and meadows in urban green space – a comparison from perspectives of greenhouse gases, drought resilience and plant functional types
Using automated transparent chambers to quantify CO2 emissions and potential emission reduction by water infiltration systems in drained coastal peatlands in the Netherlands
Large contribution of soil N2O emission to the global warming potential of a large-scale oil palm plantation despite changing from conventional to reduced management practices
Identifying landscape hot and cold spots of soil greenhouse gas fluxes by combining field measurements and remote sensing data
Enhanced Southern Ocean CO2 outgassing as a result of stronger and poleward shifted southern hemispheric westerlies
Spatial and temporal variability of methane emissions and environmental conditions in a hyper-eutrophic fishpond
Optical and radar Earth observation data for upscaling methane emissions linked to permafrost degradation in sub-Arctic peatlands in northern Sweden
Herbivore–shrub interactions influence ecosystem respiration and biogenic volatile organic compound composition in the subarctic
Methane emissions due to reservoir flushing: a significant emission pathway?
Carbon dioxide and methane fluxes from mounds of African fungus-growing termites
Diel and seasonal methane dynamics in the shallow and turbulent Wadden Sea
Technical note: Skirt chamber – an open dynamic method for the rapid and minimally intrusive measurement of greenhouse gas emissions from peatlands
Seasonal variability of nitrous oxide concentrations and emissions in a temperate estuary
Reviews and syntheses: Recent advances in microwave remote sensing in support of terrestrial carbon cycle science in Arctic–boreal regions
Simulated methane emissions from Arctic ponds are highly sensitive to warming
Water-table-driven greenhouse gas emission estimates guide peatland restoration at national scale
Relationships between greenhouse gas production and landscape position during short-term permafrost thaw under anaerobic conditions in the Lena Delta
Carbon emissions and radiative forcings from tundra wildfires in the Yukon–Kuskokwim River Delta, Alaska
Carbon monoxide (CO) cycling in the Fram Strait, Arctic Ocean
Post-flooding disturbance recovery promotes carbon capture in riparian zones
Meteorological responses of carbon dioxide and methane fluxes in the terrestrial and aquatic ecosystems of a subarctic landscape
Carbon emission and export from the Ket River, western Siberia
Evaluation of wetland CH4 in the Joint UK Land Environment Simulator (JULES) land surface model using satellite observations
Greenhouse gas fluxes in mangrove forest soil in an Amazon estuary
Temporal patterns and drivers of CO2 emission from dry sediments in a groyne field of a large river
Effects of water table level and nitrogen deposition on methane and nitrous oxide emissions in an alpine peatland
Highest methane concentrations in an Arctic river linked to local terrestrial inputs
Seasonal study of the small-scale variability in dissolved methane in the western Kiel Bight (Baltic Sea) during the European heatwave in 2018
Trace gas fluxes from tidal salt marsh soils: implications for carbon–sulfur biogeochemistry
Spatial and temporal variation in δ13C values of methane emitted from a hemiboreal mire: methanogenesis, methanotrophy, and hysteresis
Intercomparison of methods to estimate gross primary production based on CO2 and COS flux measurements
Lateral carbon export has low impact on the net ecosystem carbon balance of a polygonal tundra catchment
The effect of static chamber base on N2O flux in drip irrigation
Ingeborg Bussmann, Eric P. Achterberg, Holger Brix, Nicolas Brüggemann, Götz Flöser, Claudia Schütze, and Philipp Fischer
Biogeosciences, 21, 3819–3838, https://doi.org/10.5194/bg-21-3819-2024, https://doi.org/10.5194/bg-21-3819-2024, 2024
Short summary
Short summary
Methane (CH4) is an important greenhouse gas and contributes to climate warming. However, the input of CH4 from coastal areas to the atmosphere is not well defined. Dissolved and atmospheric CH4 was determined at high spatial resolution in or above the North Sea. The atmospheric CH4 concentration was mainly influenced by wind direction. With our detailed study on the spatial distribution of CH4 fluxes we were able to provide a detailed and more realistic estimation of coastal CH4 fluxes.
Niu Zhu, Jinniu Wang, Dongliang Luo, Xufeng Wang, Cheng Shen, and Ning Wu
Biogeosciences, 21, 3509–3522, https://doi.org/10.5194/bg-21-3509-2024, https://doi.org/10.5194/bg-21-3509-2024, 2024
Short summary
Short summary
Our study delves into the vital role of subalpine forests in the Qinghai–Tibet Plateau as carbon sinks in the context of climate change. Utilizing advanced eddy covariance systems, we uncover their significant carbon sequestration potential, observing distinct seasonal patterns influenced by temperature, humidity, and radiation. Notably, these forests exhibit robust carbon absorption, with potential implications for global carbon balance.
Colette L. Kelly, Nicole M. Travis, Pascale Anabelle Baya, Claudia Frey, Xin Sun, Bess B. Ward, and Karen L. Casciotti
Biogeosciences, 21, 3215–3238, https://doi.org/10.5194/bg-21-3215-2024, https://doi.org/10.5194/bg-21-3215-2024, 2024
Short summary
Short summary
Nitrous oxide, a potent greenhouse gas, accumulates in regions of the ocean that are low in dissolved oxygen. We used a novel combination of chemical tracers to determine how nitrous oxide is produced in one of these regions, the eastern tropical North Pacific Ocean. Our experiments showed that the two most important sources of nitrous oxide under low-oxygen conditions are denitrification, an anaerobic process, and a novel “hybrid” process performed by ammonia-oxidizing archaea.
Hella van Asperen, Thorsten Warneke, Alessandro Carioca de Araújo, Bruce Forsberg, Sávio José Filgueiras Ferreira, Thomas Röckmann, Carina van der Veen, Sipko Bulthuis, Leonardo Ramos de Oliveira, Thiago de Lima Xavier, Jailson da Mata, Marta de Oliveira Sá, Paulo Ricardo Teixeira, Julie Andrews de França e Silva, Susan Trumbore, and Justus Notholt
Biogeosciences, 21, 3183–3199, https://doi.org/10.5194/bg-21-3183-2024, https://doi.org/10.5194/bg-21-3183-2024, 2024
Short summary
Short summary
Carbon monoxide (CO) is regarded as an important indirect greenhouse gas. Soils can emit and take up CO, but, until now, uncertainty remains as to which process dominates in tropical rainforests. We present the first soil CO flux measurements from a tropical rainforest. Based on our observations, we report that tropical rainforest soils are a net source of CO. In addition, we show that valley streams and inundated areas are likely additional hot spots of CO in the ecosystem.
Yélognissè Agbohessou, Claire Delon, Manuela Grippa, Eric Mougin, Daouda Ngom, Espoir Koudjo Gaglo, Ousmane Ndiaye, Paulo Salgado, and Olivier Roupsard
Biogeosciences, 21, 2811–2837, https://doi.org/10.5194/bg-21-2811-2024, https://doi.org/10.5194/bg-21-2811-2024, 2024
Short summary
Short summary
Emissions of greenhouse gases in the Sahel are not well represented because they are considered weak compared to the rest of the world. However, natural areas in the Sahel emit carbon dioxide and nitrous oxides, which need to be assessed because of extended surfaces. We propose an assessment of such emissions in Sahelian silvopastoral systems and of how they are influenced by environmental characteristics. These results are essential to inform climate change strategies in the region.
Merit van den Berg, Thomas M. Gremmen, Renske J. E. Vroom, Jacobus van Huissteden, Jim Boonman, Corine J. A. van Huissteden, Ype van der Velde, Alfons J. P. Smolders, and Bas P. van de Riet
Biogeosciences, 21, 2669–2690, https://doi.org/10.5194/bg-21-2669-2024, https://doi.org/10.5194/bg-21-2669-2024, 2024
Short summary
Short summary
Drained peatlands emit 3 % of the global greenhouse gas emissions. Paludiculture is a way to reduce CO2 emissions while at the same time generating an income for landowners. The side effect is the potentially high methane emissions. We found very high methane emissions for broadleaf cattail compared with narrowleaf cattail and water fern. The rewetting was, however, effective to stop CO2 emissions for all species. The highest potential to reduce greenhouse gas emissions had narrowleaf cattail.
Thea H. Heimdal, Galen A. McKinley, Adrienne J. Sutton, Amanda R. Fay, and Lucas Gloege
Biogeosciences, 21, 2159–2176, https://doi.org/10.5194/bg-21-2159-2024, https://doi.org/10.5194/bg-21-2159-2024, 2024
Short summary
Short summary
Measurements of ocean carbon are limited in time and space. Machine learning algorithms are therefore used to reconstruct ocean carbon where observations do not exist. Improving these reconstructions is important in order to accurately estimate how much carbon the ocean absorbs from the atmosphere. In this study, we find that a small addition of observations from the Southern Ocean, obtained by autonomous sampling platforms, could significantly improve the reconstructions.
Guilherme L. Torres Mendonça, Julia Pongratz, and Christian H. Reick
Biogeosciences, 21, 1923–1960, https://doi.org/10.5194/bg-21-1923-2024, https://doi.org/10.5194/bg-21-1923-2024, 2024
Short summary
Short summary
We study the timescale dependence of airborne fraction and underlying feedbacks by a theory of the climate–carbon system. Using simulations we show the predictive power of this theory and find that (1) this fraction generally decreases for increasing timescales and (2) at all timescales the total feedback is negative and the model spread in a single feedback causes the spread in the airborne fraction. Our study indicates that those are properties of the system, independently of the scenario.
François Clayer, Jan Erik Thrane, Kuria Ndungu, Andrew King, Peter Dörsch, and Thomas Rohrlack
Biogeosciences, 21, 1903–1921, https://doi.org/10.5194/bg-21-1903-2024, https://doi.org/10.5194/bg-21-1903-2024, 2024
Short summary
Short summary
Determination of dissolved greenhouse gas (GHG) in freshwater allows us to estimate GHG fluxes. Mercuric chloride (HgCl2) is used to preserve water samples prior to GHG analysis despite its environmental and health impacts and interferences with water chemistry in freshwater. Here, we tested the effects of HgCl2, two substitutes and storage time on GHG in water from two boreal lakes. Preservation with HgCl2 caused overestimation of CO2 concentration with consequences for GHG flux estimation.
Helena Rautakoski, Mika Korkiakoski, Jarmo Mäkelä, Markku Koskinen, Kari Minkkinen, Mika Aurela, Paavo Ojanen, and Annalea Lohila
Biogeosciences, 21, 1867–1886, https://doi.org/10.5194/bg-21-1867-2024, https://doi.org/10.5194/bg-21-1867-2024, 2024
Short summary
Short summary
Current and future nitrous oxide (N2O) emissions are difficult to estimate due to their high variability in space and time. Several years of N2O fluxes from drained boreal peatland forest indicate high importance of summer precipitation, winter temperature, and snow conditions in controlling annual N2O emissions. The results indicate increasing year-to-year variation in N2O emissions in changing climate with more extreme seasonal weather conditions.
Matthias Koschorreck, Norbert Kamjunke, Uta Koedel, Michael Rode, Claudia Schuetze, and Ingeborg Bussmann
Biogeosciences, 21, 1613–1628, https://doi.org/10.5194/bg-21-1613-2024, https://doi.org/10.5194/bg-21-1613-2024, 2024
Short summary
Short summary
We measured the emission of carbon dioxide (CO2) and methane (CH4) from different sites at the river Elbe in Germany over 3 days to find out what is more important for quantification: small-scale spatial variability or diurnal temporal variability. We found that CO2 emissions were very different between day and night, while CH4 emissions were more different between sites. Dried out river sediments contributed to CO2 emissions, while the side areas of the river were important CH4 sources.
Odysseas Sifounakis, Edwin Haas, Klaus Butterbach-Bahl, and Maria P. Papadopoulou
Biogeosciences, 21, 1563–1581, https://doi.org/10.5194/bg-21-1563-2024, https://doi.org/10.5194/bg-21-1563-2024, 2024
Short summary
Short summary
We performed a full assessment of the carbon and nitrogen cycles of a cropland ecosystem. An uncertainty analysis and quantification of all carbon and nitrogen fluxes were deployed. The inventory simulations include greenhouse gas emissions of N2O, NH3 volatilization and NO3 leaching from arable land cultivation in Greece. The inventory also reports changes in soil organic carbon and nitrogen stocks in arable soils.
Nathaniel B. Weston, Cynthia Troy, Patrick J. Kearns, Jennifer L. Bowen, William Porubsky, Christelle Hyacinthe, Christof Meile, Philippe Van Cappellen, and Samantha B. Joye
EGUsphere, https://doi.org/10.5194/egusphere-2024-448, https://doi.org/10.5194/egusphere-2024-448, 2024
Short summary
Short summary
Nitrous oxide (N2O) is a potent greenhouse and ozone depleting gas produced largely from microbial nitrogen cycling processes, and human activities have resulted in increases in atmospheric N2O. We investigate the role of physical and chemical disturbance to soils and sediments. We demonstrate that the disturbance increases N2O production, the microbial community adapts to disturbance over time, an initial disturbance appears to confer resilience to subsequent disturbance.
Sarah M. Ludwig, Luke Schiferl, Jacqueline Hung, Susan M. Natali, and Roisin Commane
Biogeosciences, 21, 1301–1321, https://doi.org/10.5194/bg-21-1301-2024, https://doi.org/10.5194/bg-21-1301-2024, 2024
Short summary
Short summary
Landscapes are often assumed to be homogeneous when using eddy covariance fluxes, which can lead to biases when calculating carbon budgets. In this study we report eddy covariance carbon fluxes from heterogeneous tundra. We used the footprints of each flux observation to unmix the fluxes coming from components of the landscape. We identified and quantified hot spots of carbon emissions in the landscape. Accurately scaling with landscape heterogeneity yielded half as much regional carbon uptake.
Martti Honkanen, Mika Aurela, Juha Hatakka, Lumi Haraguchi, Sami Kielosto, Timo Mäkelä, Jukka Seppälä, Simo-Matti Siiriä, Ken Stenbäck, Juha-Pekka Tuovinen, Pasi Ylöstalo, and Lauri Laakso
EGUsphere, https://doi.org/10.5194/egusphere-2024-628, https://doi.org/10.5194/egusphere-2024-628, 2024
Short summary
Short summary
We present the 5-year (2017–2021) data set of the air-sea CO2 flux measurements made in the Archipelago Sea, the Baltic Sea. The study site was found to act as a net source of CO2 with an average annual net air-sea CO2 exchange of 27.1 gC m-2 y-1, indicating that this marine system respires carbon originated elsewhere. The annual CO2 emission varied between 18.2 in 2018 and 39.2 gC m-2 y-1 in 2017. These two years differed greatly in terms of the algal blooms and the pCO2 drawdown.
Silvie Lainela, Erik Jacobs, Stella-Theresa Stoicescu, Gregor Rehder, and Urmas Lips
EGUsphere, https://doi.org/10.5194/egusphere-2024-598, https://doi.org/10.5194/egusphere-2024-598, 2024
Short summary
Short summary
We evaluate the variability of carbon dioxide and methane in the surface layer of the north-eastern basins of the Baltic Sea in 2018. We show that the shallower coastal areas have considerably higher spatial variability and seasonal amplitude of surface layer pCO2 and cCH4 than measured in the Baltic Sea offshore areas. Despite this high variability, caused mostly by coastal physical processes, the average annual air-sea CO2 fluxes differed only marginally between the sub-basins.
Sigrid Trier Kjær, Sebastian Westermann, Nora Nedkvitne, and Peter Dörsch
EGUsphere, https://doi.org/10.5194/egusphere-2024-562, https://doi.org/10.5194/egusphere-2024-562, 2024
Short summary
Short summary
Permafrost peatlands are thawing due to climate change, releasing large quantities of carbon that degrades upon thawing and is released as CO2, CH4, or dissolved organic carbon (DOC). We incubated thawed Norwegian permafrost peat plateaus and thermokarst pond sediment found next to permafrost for up to 350 days to measure carbon loss. CO2 production was largest initially, while CH4 production increased over time. The largest carbon loss was measured at the top of the peat plateau core as DOC.
Justine Trémeau, Beñat Olascoaga, Leif Backman, Esko Karvinen, Henriikka Vekuri, and Liisa Kulmala
Biogeosciences, 21, 949–972, https://doi.org/10.5194/bg-21-949-2024, https://doi.org/10.5194/bg-21-949-2024, 2024
Short summary
Short summary
We studied urban lawns and meadows in the Helsinki metropolitan area, Finland. We found that meadows are more resistant to drought events but that they do not increase carbon sequestration compared with lawns. Moreover, the transformation from lawns to meadows did not demonstrate any negative climate effects in terms of greenhouse gas emissions. Even though social and economic aspects also steer urban development, these results can guide planning to consider carbon-smart options.
Ralf C. H. Aben, Daniel van de Craats, Jim Boonman, Stijn H. Peeters, Bart Vriend, Coline C. F. Boonman, Ype van der Velde, Gilles Erkens, and Merit van den Berg
EGUsphere, https://doi.org/10.5194/egusphere-2024-403, https://doi.org/10.5194/egusphere-2024-403, 2024
Short summary
Short summary
Drained peatlands cause high CO2 emissions. Raising the groundwater table can lower emissions. We used automated flux chamber measurements on 12 sites for up to 4 years and found a linear association between annual water table depth and CO2 emission. We also found that the average amount of carbon above the water table better predicted annual CO2 emission than water table depth and that water infiltration systems—used to effectively raise the water table—can be used to mitigate CO2 emissions.
Guantao Chen, Edzo Veldkamp, Muhammad Damris, Bambang Irawan, Aiyen Tjoa, and Marife D. Corre
Biogeosciences, 21, 513–529, https://doi.org/10.5194/bg-21-513-2024, https://doi.org/10.5194/bg-21-513-2024, 2024
Short summary
Short summary
We established an oil palm management experiment in a large-scale oil palm plantation in Jambi, Indonesia. We recorded oil palm fruit yield and measured soil CO2, N2O, and CH4 fluxes. After 4 years of treatment, compared with conventional fertilization with herbicide weeding, reduced fertilization with mechanical weeding did not reduce yield and soil greenhouse gas emissions, which highlights the legacy effects of over a decade of conventional management prior to the start of the experiment.
Elizabeth Gachibu Wangari, Ricky Mwangada Mwanake, Tobias Houska, David Kraus, Gretchen Maria Gettel, Ralf Kiese, Lutz Breuer, and Klaus Butterbach-Bahl
Biogeosciences, 20, 5029–5067, https://doi.org/10.5194/bg-20-5029-2023, https://doi.org/10.5194/bg-20-5029-2023, 2023
Short summary
Short summary
Agricultural landscapes act as sinks or sources of the greenhouse gases (GHGs) CO2, CH4, or N2O. Various physicochemical and biological processes control the fluxes of these GHGs between ecosystems and the atmosphere. Therefore, fluxes depend on environmental conditions such as soil moisture, soil temperature, or soil parameters, which result in large spatial and temporal variations of GHG fluxes. Here, we describe an example of how this variation may be studied and analyzed.
Laurie C. Menviel, Paul Spence, Andrew E. Kiss, Matthew A. Chamberlain, Hakase Hayashida, Matthew H. England, and Darryn Waugh
Biogeosciences, 20, 4413–4431, https://doi.org/10.5194/bg-20-4413-2023, https://doi.org/10.5194/bg-20-4413-2023, 2023
Short summary
Short summary
As the ocean absorbs 25% of the anthropogenic emissions of carbon, it is important to understand the impact of climate change on the flux of carbon between the ocean and the atmosphere. Here, we use a very high-resolution ocean, sea-ice, carbon cycle model to show that the capability of the Southern Ocean to uptake CO2 has decreased over the last 40 years due to a strengthening and poleward shift of the southern hemispheric westerlies. This trend is expected to continue over the coming century.
Petr Znachor, Jiří Nedoma, Vojtech Kolar, and Anna Matoušů
Biogeosciences, 20, 4273–4288, https://doi.org/10.5194/bg-20-4273-2023, https://doi.org/10.5194/bg-20-4273-2023, 2023
Short summary
Short summary
We conducted intensive spatial sampling of the hypertrophic fishpond to better understand the spatial dynamics of methane fluxes and environmental heterogeneity in fishponds. The diffusive fluxes of methane accounted for only a minor fraction of the total fluxes and both varied pronouncedly within the pond and over the studied summer season. This could be explained only by the water depth. Wind substantially affected temperature, oxygen and chlorophyll a distribution in the pond.
Sofie Sjögersten, Martha Ledger, Matthias Siewert, Betsabé de la Barreda-Bautista, Andrew Sowter, David Gee, Giles Foody, and Doreen S. Boyd
Biogeosciences, 20, 4221–4239, https://doi.org/10.5194/bg-20-4221-2023, https://doi.org/10.5194/bg-20-4221-2023, 2023
Short summary
Short summary
Permafrost thaw in Arctic regions is increasing methane emissions, but quantification is difficult given the large and remote areas impacted. We show that UAV data together with satellite data can be used to extrapolate emissions across the wider landscape as well as detect areas at risk of higher emissions. A transition of currently degrading areas to fen type vegetation can increase emission by several orders of magnitude, highlighting the importance of quantifying areas at risk.
Cole G. Brachmann, Tage Vowles, Riikka Rinnan, Mats P. Björkman, Anna Ekberg, and Robert G. Björk
Biogeosciences, 20, 4069–4086, https://doi.org/10.5194/bg-20-4069-2023, https://doi.org/10.5194/bg-20-4069-2023, 2023
Short summary
Short summary
Herbivores change plant communities through grazing, altering the amount of CO2 and plant-specific chemicals (termed VOCs) emitted. We tested this effect by excluding herbivores and studying the CO2 and VOC emissions. Herbivores reduced CO2 emissions from a meadow community and altered VOC composition; however, community type had the strongest effect on the amount of CO2 and VOCs released. Herbivores can mediate greenhouse gas emissions, but the effect is marginal and community dependent.
Ole Lessmann, Jorge Encinas Fernández, Karla Martínez-Cruz, and Frank Peeters
Biogeosciences, 20, 4057–4068, https://doi.org/10.5194/bg-20-4057-2023, https://doi.org/10.5194/bg-20-4057-2023, 2023
Short summary
Short summary
Based on a large dataset of seasonally resolved methane (CH4) pore water concentrations in a reservoir's sediment, we assess the significance of CH4 emissions due to reservoir flushing. In the studied reservoir, CH4 emissions caused by one flushing operation can represent 7 %–14 % of the annual CH4 emissions and depend on the timing of the flushing operation. In reservoirs with high sediment loadings, regular flushing may substantially contribute to the overall CH4 emissions.
Matti Räsänen, Risto Vesala, Petri Rönnholm, Laura Arppe, Petra Manninen, Markus Jylhä, Jouko Rikkinen, Petri Pellikka, and Janne Rinne
Biogeosciences, 20, 4029–4042, https://doi.org/10.5194/bg-20-4029-2023, https://doi.org/10.5194/bg-20-4029-2023, 2023
Short summary
Short summary
Fungus-growing termites recycle large parts of dead plant material in African savannas and are significant sources of greenhouse gases. We measured CO2 and CH4 fluxes from their mounds and surrounding soils in open and closed habitats. The fluxes scale with mound volume. The results show that emissions from mounds of fungus-growing termites are more stable than those from other termites. The soil fluxes around the mound are affected by the termite colonies at up to 2 m distance from the mound.
Tim René de Groot, Anne Margriet Mol, Katherine Mesdag, Pierre Ramond, Rachel Ndhlovu, Julia Catherine Engelmann, Thomas Röckmann, and Helge Niemann
Biogeosciences, 20, 3857–3872, https://doi.org/10.5194/bg-20-3857-2023, https://doi.org/10.5194/bg-20-3857-2023, 2023
Short summary
Short summary
This study investigates methane dynamics in the Wadden Sea. Our measurements revealed distinct variations triggered by seasonality and tidal forcing. The methane budget was higher in warmer seasons but surprisingly high in colder seasons. Methane dynamics were amplified during low tides, flushing the majority of methane into the North Sea or releasing it to the atmosphere. Methanotrophic activity was also elevated during low tide but mitigated only a small fraction of the methane efflux.
Frederic Thalasso, Brenda Riquelme, Andrés Gómez, Roy Mackenzie, Francisco Javier Aguirre, Jorge Hoyos-Santillan, Ricardo Rozzi, and Armando Sepulveda-Jauregui
Biogeosciences, 20, 3737–3749, https://doi.org/10.5194/bg-20-3737-2023, https://doi.org/10.5194/bg-20-3737-2023, 2023
Short summary
Short summary
A robust skirt-chamber design to capture and quantify greenhouse gas emissions from peatlands is presented. Compared to standard methods, this design improves the spatial resolution of field studies in remote locations while minimizing intrusion.
Gesa Schulz, Tina Sanders, Yoana G. Voynova, Hermann W. Bange, and Kirstin Dähnke
Biogeosciences, 20, 3229–3247, https://doi.org/10.5194/bg-20-3229-2023, https://doi.org/10.5194/bg-20-3229-2023, 2023
Short summary
Short summary
Nitrous oxide (N2O) is an important greenhouse gas. However, N2O emissions from estuaries underlie significant uncertainties due to limited data availability and high spatiotemporal variability. We found the Elbe Estuary (Germany) to be a year-round source of N2O, with the highest emissions in winter along with high nitrogen loads. However, in spring and summer, N2O emissions did not decrease alongside lower nitrogen loads because organic matter fueled in situ N2O production along the estuary.
Alex Mavrovic, Oliver Sonnentag, Juha Lemmetyinen, Jennifer L. Baltzer, Christophe Kinnard, and Alexandre Roy
Biogeosciences, 20, 2941–2970, https://doi.org/10.5194/bg-20-2941-2023, https://doi.org/10.5194/bg-20-2941-2023, 2023
Short summary
Short summary
This review supports the integration of microwave spaceborne information into carbon cycle science for Arctic–boreal regions. The microwave data record spans multiple decades with frequent global observations of soil moisture and temperature, surface freeze–thaw cycles, vegetation water storage, snowpack properties, and land cover. This record holds substantial unexploited potential to better understand carbon cycle processes.
Zoé Rehder, Thomas Kleinen, Lars Kutzbach, Victor Stepanenko, Moritz Langer, and Victor Brovkin
Biogeosciences, 20, 2837–2855, https://doi.org/10.5194/bg-20-2837-2023, https://doi.org/10.5194/bg-20-2837-2023, 2023
Short summary
Short summary
We use a new model to investigate how methane emissions from Arctic ponds change with warming. We find that emissions increase substantially. Under annual temperatures 5 °C above present temperatures, pond methane emissions are more than 3 times higher than now. Most of this increase is caused by an increase in plant productivity as plants provide the substrate microbes used to produce methane. We conclude that vegetation changes need to be included in predictions of pond methane emissions.
Julian Koch, Lars Elsgaard, Mogens H. Greve, Steen Gyldenkærne, Cecilie Hermansen, Gregor Levin, Shubiao Wu, and Simon Stisen
Biogeosciences, 20, 2387–2403, https://doi.org/10.5194/bg-20-2387-2023, https://doi.org/10.5194/bg-20-2387-2023, 2023
Short summary
Short summary
Utilizing peatlands for agriculture leads to large emissions of greenhouse gases worldwide. The emissions are triggered by lowering the water table, which is a necessary step in order to make peatlands arable. Many countries aim at reducing their emissions by restoring peatlands, which can be achieved by stopping agricultural activities and thereby raising the water table. We estimate a total emission of 2.6 Mt CO2-eq for organic-rich peatlands in Denmark and a potential reduction of 77 %.
Mélissa Laurent, Matthias Fuchs, Tanja Herbst, Alexandra Runge, Susanne Liebner, and Claire C. Treat
Biogeosciences, 20, 2049–2064, https://doi.org/10.5194/bg-20-2049-2023, https://doi.org/10.5194/bg-20-2049-2023, 2023
Short summary
Short summary
In this study we investigated the effect of different parameters (temperature, landscape position) on the production of greenhouse gases during a 1-year permafrost thaw experiment. For very similar carbon and nitrogen contents, our results show a strong heterogeneity in CH4 production, as well as in microbial abundance. According to our study, these differences are mainly due to the landscape position and the hydrological conditions established as a result of the topography.
Michael Moubarak, Seeta Sistla, Stefano Potter, Susan M. Natali, and Brendan M. Rogers
Biogeosciences, 20, 1537–1557, https://doi.org/10.5194/bg-20-1537-2023, https://doi.org/10.5194/bg-20-1537-2023, 2023
Short summary
Short summary
Tundra wildfires are increasing in frequency and severity with climate change. We show using a combination of field measurements and computational modeling that tundra wildfires result in a positive feedback to climate change by emitting significant amounts of long-lived greenhouse gasses. With these effects, attention to tundra fires is necessary for mitigating climate change.
Hanna I. Campen, Damian L. Arévalo-Martínez, and Hermann W. Bange
Biogeosciences, 20, 1371–1379, https://doi.org/10.5194/bg-20-1371-2023, https://doi.org/10.5194/bg-20-1371-2023, 2023
Short summary
Short summary
Carbon monoxide (CO) is a climate-relevant trace gas emitted from the ocean. However, oceanic CO cycling is understudied. Results from incubation experiments conducted in the Fram Strait (Arctic Ocean) indicated that (i) pH did not affect CO cycling and (ii) enhanced CO production and consumption were positively correlated with coloured dissolved organic matter and nitrate concentrations. This suggests microbial CO uptake to be the driving factor for CO cycling in the Arctic Ocean.
Yihong Zhu, Ruihua Liu, Huai Zhang, Shaoda Liu, Zhengfeng Zhang, Fei-Hai Yu, and Timothy G. Gregoire
Biogeosciences, 20, 1357–1370, https://doi.org/10.5194/bg-20-1357-2023, https://doi.org/10.5194/bg-20-1357-2023, 2023
Short summary
Short summary
With global warming, the risk of flooding is rising, but the response of the carbon cycle of aquatic and associated riparian systems
to flooding is still unclear. Based on the data collected in the Lijiang, we found that flooding would lead to significant carbon emissions of fluvial areas and riparian areas during flooding, but carbon capture may happen after flooding. In the riparian areas, the surviving vegetation, especially clonal plants, played a vital role in this transformation.
Lauri Heiskanen, Juha-Pekka Tuovinen, Henriikka Vekuri, Aleksi Räsänen, Tarmo Virtanen, Sari Juutinen, Annalea Lohila, Juha Mikola, and Mika Aurela
Biogeosciences, 20, 545–572, https://doi.org/10.5194/bg-20-545-2023, https://doi.org/10.5194/bg-20-545-2023, 2023
Short summary
Short summary
We measured and modelled the CO2 and CH4 fluxes of the terrestrial and aquatic ecosystems of the subarctic landscape for 2 years. The landscape was an annual CO2 sink and a CH4 source. The forest had the largest contribution to the landscape-level CO2 sink and the peatland to the CH4 emissions. The lakes released 24 % of the annual net C uptake of the landscape back to the atmosphere. The C fluxes were affected most by the rainy peak growing season of 2017 and the drought event in July 2018.
Artem G. Lim, Ivan V. Krickov, Sergey N. Vorobyev, Mikhail A. Korets, Sergey Kopysov, Liudmila S. Shirokova, Jan Karlsson, and Oleg S. Pokrovsky
Biogeosciences, 19, 5859–5877, https://doi.org/10.5194/bg-19-5859-2022, https://doi.org/10.5194/bg-19-5859-2022, 2022
Short summary
Short summary
In order to quantify C transport and emission and main environmental factors controlling the C cycle in Siberian rivers, we investigated the largest tributary of the Ob River, the Ket River basin, by measuring spatial and seasonal variations in carbon CO2 and CH4 concentrations and emissions together with hydrochemical analyses. The obtained results are useful for large-scale modeling of C emission and export fluxes from permafrost-free boreal rivers of an underrepresented region of the world.
Robert J. Parker, Chris Wilson, Edward Comyn-Platt, Garry Hayman, Toby R. Marthews, A. Anthony Bloom, Mark F. Lunt, Nicola Gedney, Simon J. Dadson, Joe McNorton, Neil Humpage, Hartmut Boesch, Martyn P. Chipperfield, Paul I. Palmer, and Dai Yamazaki
Biogeosciences, 19, 5779–5805, https://doi.org/10.5194/bg-19-5779-2022, https://doi.org/10.5194/bg-19-5779-2022, 2022
Short summary
Short summary
Wetlands are the largest natural source of methane, one of the most important climate gases. The JULES land surface model simulates these emissions. We use satellite data to evaluate how well JULES reproduces the methane seasonal cycle over different tropical wetlands. It performs well for most regions; however, it struggles for some African wetlands influenced heavily by river flooding. We explain the reasons for these deficiencies and highlight how future development will improve these areas.
Saúl Edgardo Martínez Castellón, José Henrique Cattanio, José Francisco Berrêdo, Marcelo Rollnic, Maria de Lourdes Ruivo, and Carlos Noriega
Biogeosciences, 19, 5483–5497, https://doi.org/10.5194/bg-19-5483-2022, https://doi.org/10.5194/bg-19-5483-2022, 2022
Short summary
Short summary
We seek to understand the influence of climatic seasonality and microtopography on CO2 and CH4 fluxes in an Amazonian mangrove. Topography and seasonality had a contrasting influence when comparing the two gas fluxes: CO2 fluxes were greater in high topography in the dry period, and CH4 fluxes were greater in the rainy season in low topography. Only CO2 fluxes were correlated with soil organic matter, the proportion of carbon and nitrogen, and redox potential.
Matthias Koschorreck, Klaus Holger Knorr, and Lelaina Teichert
Biogeosciences, 19, 5221–5236, https://doi.org/10.5194/bg-19-5221-2022, https://doi.org/10.5194/bg-19-5221-2022, 2022
Short summary
Short summary
At low water levels, parts of the bottom of rivers fall dry. These beaches or mudflats emit the greenhouse gas carbon dioxide (CO2) to the atmosphere. We found that those emissions are caused by microbial reactions in the sediment and that they change with time. Emissions were influenced by many factors like temperature, water level, rain, plants, and light.
Wantong Zhang, Zhengyi Hu, Joachim Audet, Thomas A. Davidson, Enze Kang, Xiaoming Kang, Yong Li, Xiaodong Zhang, and Jinzhi Wang
Biogeosciences, 19, 5187–5197, https://doi.org/10.5194/bg-19-5187-2022, https://doi.org/10.5194/bg-19-5187-2022, 2022
Short summary
Short summary
This work focused on the CH4 and N2O emissions from alpine peatlands in response to the interactive effects of altered water table levels and increased nitrogen deposition. Across the 2-year mesocosm experiment, nitrogen deposition showed nonlinear effects on CH4 emissions and linear effects on N2O emissions, and these N effects were associated with the water table levels. Our results imply the future scenario of strengthened CH4 and N2O emissions from an alpine peatland.
Karel Castro-Morales, Anna Canning, Sophie Arzberger, Will A. Overholt, Kirsten Küsel, Olaf Kolle, Mathias Göckede, Nikita Zimov, and Arne Körtzinger
Biogeosciences, 19, 5059–5077, https://doi.org/10.5194/bg-19-5059-2022, https://doi.org/10.5194/bg-19-5059-2022, 2022
Short summary
Short summary
Permafrost thaw releases methane that can be emitted into the atmosphere or transported by Arctic rivers. Methane measurements are lacking in large Arctic river regions. In the Kolyma River (northeast Siberia), we measured dissolved methane to map its distribution with great spatial detail. The river’s edge and river junctions had the highest methane concentrations compared to other river areas. Microbial communities in the river showed that the river’s methane likely is from the adjacent land.
Sonja Gindorf, Hermann W. Bange, Dennis Booge, and Annette Kock
Biogeosciences, 19, 4993–5006, https://doi.org/10.5194/bg-19-4993-2022, https://doi.org/10.5194/bg-19-4993-2022, 2022
Short summary
Short summary
Methane is a climate-relevant greenhouse gas which is emitted to the atmosphere from coastal areas such as the Baltic Sea. We measured the methane concentration in the water column of the western Kiel Bight. Methane concentrations were higher in September than in June. We found no relationship between the 2018 European heatwave and methane concentrations. Our results show that the methane distribution in the water column is strongly affected by temporal and spatial variabilities.
Margaret Capooci and Rodrigo Vargas
Biogeosciences, 19, 4655–4670, https://doi.org/10.5194/bg-19-4655-2022, https://doi.org/10.5194/bg-19-4655-2022, 2022
Short summary
Short summary
Tidal salt marsh soil emits greenhouse gases, as well as sulfur-based gases, which play roles in global climate but are not well studied as they are difficult to measure. Traditional methods of measuring these gases worked relatively well for carbon dioxide, but less so for methane, nitrous oxide, carbon disulfide, and dimethylsulfide. High variability of trace gases complicates the ability to accurately calculate gas budgets and new approaches are needed for monitoring protocols.
Janne Rinne, Patryk Łakomiec, Patrik Vestin, Joel D. White, Per Weslien, Julia Kelly, Natascha Kljun, Lena Ström, and Leif Klemedtsson
Biogeosciences, 19, 4331–4349, https://doi.org/10.5194/bg-19-4331-2022, https://doi.org/10.5194/bg-19-4331-2022, 2022
Short summary
Short summary
The study uses the stable isotope 13C of carbon in methane to investigate the origins of spatial and temporal variation in methane emitted by a temperate wetland ecosystem. The results indicate that methane production is more important for spatial variation than methane consumption by micro-organisms. Temporal variation on a seasonal timescale is most likely affected by more than one driver simultaneously.
Kukka-Maaria Kohonen, Roderick Dewar, Gianluca Tramontana, Aleksanteri Mauranen, Pasi Kolari, Linda M. J. Kooijmans, Dario Papale, Timo Vesala, and Ivan Mammarella
Biogeosciences, 19, 4067–4088, https://doi.org/10.5194/bg-19-4067-2022, https://doi.org/10.5194/bg-19-4067-2022, 2022
Short summary
Short summary
Four different methods for quantifying photosynthesis (GPP) at ecosystem scale were tested, of which two are based on carbon dioxide (CO2) and two on carbonyl sulfide (COS) flux measurements. CO2-based methods are traditional partitioning, and a new method uses machine learning. We introduce a novel method for calculating GPP from COS fluxes, with potentially better applicability than the former methods. Both COS-based methods gave on average higher GPP estimates than the CO2-based estimates.
Lutz Beckebanze, Benjamin R. K. Runkle, Josefine Walz, Christian Wille, David Holl, Manuel Helbig, Julia Boike, Torsten Sachs, and Lars Kutzbach
Biogeosciences, 19, 3863–3876, https://doi.org/10.5194/bg-19-3863-2022, https://doi.org/10.5194/bg-19-3863-2022, 2022
Short summary
Short summary
In this study, we present observations of lateral and vertical carbon fluxes from a permafrost-affected study site in the Russian Arctic. From this dataset we estimate the net ecosystem carbon balance for this study site. We show that lateral carbon export has a low impact on the net ecosystem carbon balance during the complete study period (3 months). Nevertheless, our results also show that lateral carbon export can exceed vertical carbon uptake at the beginning of the growing season.
Shahar Baram, Asher Bar-Tal, Alon Gal, Shmulik P. Friedman, and David Russo
Biogeosciences, 19, 3699–3711, https://doi.org/10.5194/bg-19-3699-2022, https://doi.org/10.5194/bg-19-3699-2022, 2022
Short summary
Short summary
Static chambers are the most common tool used to measure greenhouse gas (GHG) fluxes. We tested the impact of such chambers on nitrous oxide emissions in drip irrigation. Field measurements and 3-D simulations show that the chamber base drastically affects the water and nutrient distribution in the soil and hence the measured GHG fluxes. A nomogram is suggested to determine the optimal diameter of a cylindrical chamber that ensures minimal disturbance.
Cited articles
Andrews, S.: FastQC: a quality control tool for high throughput sequence
data, available at: http://www.bioinformatics.babraham.ac.uk/projects/fastqc (last access: 29 September 2017), 2010.
Avdeeva, L. and Gvozdev, R.: Effect of gopper goncentration on the growth of
Methylococcus gapsulatus (Strain Ì), Chem. J. Mold., 12, 110–114, https://doi.org/10.19261/cjm.2017.404,
2017.
Barnes, R. O. and Goldberg, E. D.: Methane production and consumption in
anoxic marine sediments, Geology, 4, 297, https://doi.org/10.1130/0091-7613(1976)4<297:MPACIA>2.0.CO;2, 1976.
Bastviken, D., Ejlertsson, J., Sundh, I., and Tranvik, L.: Methane as a
Source of Carbon and Energy for Lake Pelagic Food Webs, Ecology, 84, 969–981, 2003.
Beck, D. A. C., Kalyuzhnaya, M. G., Malfatti, S., Tringe, S., Glavina del
Rio, T., Ivanova, N., Lidstrom, M., and Chistoserdova, L.: A metagenomic
insight into freshwater methane-utilizing communities and evidence for
cooperation between the Methylococcaceae and the Methylophilaceae, PeerJ., 1, e23, https://doi.org/10.7717/peerj.23, 2013.
Boetius, A. and Wenzhöfer, F.: Seafloor oxygen consumption fuelled by
methane from cold seeps, Nat. Geosci., 6, 725–734, https://doi.org/10.1038/ngeo1926,
2013.
Coleman, D. D., Risatti, J. B., and Schoell, M.: Fractionation of carbon and
hydrogen isotopes by methane-oxidizing bacteria, Geochim. Cosmochim. Acta,
45, 1033–1037, https://doi.org/10.1016/0016-7037(81)90129-0, 1981.
Cowen, J. P., Wen, X., and Popp, B. N.: Methane in aging hydrothermal plumes,
Geochim. Cosmochim. Acta, 66, 3563–3571,
https://doi.org/10.1016/S0016-7037(02)00975-4, 2002.
Cox, G. F. N. and Weeks, W. F.: Equations for determining the gas and brine
volumes in sea-ice samples, J. Glaciol., 29, 306–316, 1983.
Crespo-Medina, M., Meile, C. D., Hunter, K. S., Diercks, A.-R., Asper, V.
L., Orphan, V. J., Tavormina, P. L., Nigro, L. M., Battles, J. J., Chanton,
J. P., Shiller, A. M., Joung, D.-J., Amon, R. M. W., Bracco, A., Montoya, J.
P., Villareal, T. A., Wood, A. M., and Joye, S. B.: The rise and fall of
methanotrophy following a deepwater oil-well blowout, Nat. Geosci., 7,
423–427, https://doi.org/10.1038/ngeo2156, 2014.
Damm, E. and Budéus, G.: Fate of vent-derived methane in seawater above
the Håkon Mosby mud volcano (Norwegian Sea), Mar. Chem., 82, 1–11,
https://doi.org/10.1016/S0304-4203(03)00031-8, 2003.
Damm, E., Mackensen, A., Budéus, G., Faber, E., and Hanfland, C.:
Pathways of methane in seawater: Plume spreading in an Arctic shelf
environment (SW-Spitsbergen), Cont. Shelf Res., 25, 1453–1472,
https://doi.org/10.1016/j.csr.2005.03.003, 2005.
Damm, E., Kiene, R. P., Schwarz, J., Falck, E., and Dieckmann, G.: Methane
cycling in Arctic shelf water and its relationship with phytoplankton
biomass and DMSP, Mar. Chem., 109, 45–59,
https://doi.org/10.1016/j.marchem.2007.12.003, 2008.
Damm, E., Helmke, E., Thoms, S., Schauer, U., Nöthig, E., Bakker, K., and
Kiene, R. P.: Methane production in aerobic oligotrophic surface water in
the central Arctic Ocean, Biogeosciences, 7, 1099–1108,
https://doi.org/10.5194/bg-7-1099-2010, 2010.
Damm, E., Rudels, B., Schauer, U., Mau, S., and Dieckmann, G.: Methane exess
in Arctic surface water- triggered by sea ice formation and melting, Sci. Rep., 16, 16179, https://doi.org/10.1038/srep16179, 2015.
de Angelis, M. A. and Lee, C.: Methane production during zooplankton grazing
on marine phytoplankton, Limnol. Oceanogr., 39, 1298–1308,
https://doi.org/10.4319/lo.1994.39.6.1298, 1994.
Deutzmann, J. S., Worner, S., and Schink, B.: Activity and Diversity of
Methanotrophic Bacteria at Methane Seeps in Eastern Lake Constance
Sediments, Appl. Environ. Microbiol., 77, 2573–2581,
https://doi.org/10.1128/AEM.02776-10, 2011.
Dunfield, P. F., Yuryev, A., Senin, P., Smirnova, A. V., Stott, M. B., Hou,
S., Ly, B., Saw, J. H., Zhou, Z., Ren, Y., Wang, J., Mountain, B. W., Crowe,
M. A., Weatherby, T. M., Bodelier, P. L. E., Liesack, W., Feng, L., Wang, L., and Alam, M.: Methane oxidation by an extremely acidophilic bacterium of the
phylum Verrucomicrobia, Nature, 450, 879–882,
https://doi.org/10.1038/nature06411, 2007.
Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C., and Knight, R.:
UCHIME improves sensitivity and speed of chimera detection, Bioinformatics,
27, 2194–2200, https://doi.org/10.1093/bioinformatics/btr381, 2011.
Eronen-Rasimus, E., Luhtanen, A.-M., Rintala, J.-M., Delille, B., Dieckmann,
G., Karkman, A., and Tison, J.-L.: An active bacterial community linked to
high chl-a concentrations in Antarctic winter-pack ice and evidence for the
development of an anaerobic sea-ice bacterial community, ISME J., 11, 2345–2355, https://doi.org/10.1038/ismej.2017.96, 2017.
Etminan, M., Myhre, G., Highwood, E. J., and Shine, K. P.: Radiative forcing
of carbon dioxide, methane, and nitrous oxide: A significant revision of the
methane radiative forcing: Greenhouse Gas Radiative Forcing, Geophys. Res.
Lett., 43, 12,614–12,623, https://doi.org/10.1002/2016GL071930, 2016.
Eyice, Ö., Namura, M., Chen, Y., Mead, A., Samavedam, S., and
Schäfer, H.: SIP metagenomics identifies uncultivated Methylophilaceae
as dimethylsulphide degrading bacteria in soil and lake sediment, ISME J.,
9, 2336–2348, https://doi.org/10.1038/ismej.2015.37, 2015.
Fish, J. A., Chai, B., Wang, Q., Sun, Y., Brown, C. T., Tiedje, J. M., and
Cole, J. R.: FunGene: the functional gene pipeline and repository, Front.
Microbiol., 4, 291, https://doi.org/10.3389/fmicb.2013.00291, 2013.
Florez-Leiva, L., Tarifeño, E., Cornejo, M., Kiene, R., and Farías,
L.: High production of nitrous oxide (N2O), methane (CH4
and dimethylsulphoniopropionate (DMSP) in a massive marine phytoplankton
culture, Biogeosciences Discuss., 7, 6705–6723,
https://doi.org/10.5194/bgd-7-6705-2010, 2010.
Formolo, M.: The microbial production of methane and other volatile
hydrocarbons, in: Handbook of Hydrocarbon and Lipid Microbiology, edited by:
Timmis, K. N., Springer Berlin Heidelberg, Berlin, Heidelberg, 113–126, available at: http://link.springer.com/10.1007/978-3-540-77587-4_6 (last access: 5 January 2017), 2010.
Gentz, T., Damm, E., Schneider von Deimling, J., Mau, S., McGinnis, D. F., and Schlüter, M.: A water column study of methane around gas flares
located at the West Spitsbergen continental margin, Cont. Shelf Res., 72,
107–118, https://doi.org/10.1016/j.csr.2013.07.013, 2014.
Golden, K. M., Ackley, S. F., and Lytle, V. I.: The Percolation Phase
Transition in Sea Ice, Science, 282, 2238–2241,
https://doi.org/10.1126/science.282.5397.2238, 1998.
Grant, N. J. and Whiticar, M. J.: Stable carbon isotopic evidence for
methane oxidation in plumes above Hydrate Ridge, Cascadia Oregon Margin.,
Glob. Biogeochem. Cycles, 16, 71–1–71–13, https://doi.org/10.1029/2001GB001851,
2002.
Hakemian, A. S. and Rosenzweig, A. C.: The Biochemistry of Methane
Oxidation, Annu. Rev. Biochem., 76, 223–241,
https://doi.org/10.1146/annurev.biochem.76.061505.175355, 2007.
Hansman, R. L., Thurber, A. R., Levin, L. A., and Aluwihare, L. I.: Methane
fates in the benthos and water column at cold seep sites along the
continental margin of Central and North America, Deep Sea Res. Part
Oceanogr. Res. Pap., 120, 122–131, https://doi.org/10.1016/j.dsr.2016.12.016, 2017.
Hanson, R. S. and Hanson, T. E.: Methanotrophic bacteria, Microbiol. Rev.,
60, 439–471, 1996.
Heeschen, K. U., Keir, R. S., Rehder, G., Klatt, O., and Suess, E.: Methane
dynamics in the Weddell Sea determined via stable isotope ratios and CFC-11,
Glob. Biogeochem. Cycles, 18, GB2012, https://doi.org/10.1029/2003GB002151, 2004.
Holmes, A. J., Roslev, P., McDonald, I. R., Iversen, N., Henriksen, K., and
Murrell, J. C.: Characterization of Methanotrophic Bacterial Populations in
Soils Showing Atmospheric Methane Uptake, Appl. Environ. Microbiol., 65,
3312–3318, 1999.
Hutchens, E., Radajewski, S., Dumont, M. G., McDonald, I. R., and Murrell, J.
C.: Analysis of methanotrophic bacteria in Movile Cave by stable isotope
probing: Methanotrophs in Movile Cave, Environ. Microbiol., 6, 111–120,
https://doi.org/10.1046/j.1462-2920.2003.00543.x, 2003.
IPCC: Climate Change 2014: Mitigation of Climate Change. Contribution of
Working Group III to the Fifth Assessment Report of the Intergovernmental
Panel on Climate Change, Edenhofer, O., Pichs-Madruga, R., Sokona, Y.,
Farahani, E., Kadner, S., Seyboth, K., Adler, A., Baum, I., Brunner, S.,
Eickemeier, P., Kriemann, B., Savolainen, J., Schlömer, S., von Stechow,
C., Zwickel, T., Minx, J. C. (Eds.), Cambridge University Press, Cambridge,
UK and New York, NY, USA., 2014.
Jensen, S., Neufeld, J. D., Birkeland, N.-K., Hovland, M., and Murrell, J.
C.: Methane assimilation and trophic interactions with marine
Methylomicrobium in deep-water coral reef sediment off the coast of Norway:
Deep-water coral reef methanotrophy, FEMS Microbiol. Ecol., 66, 320–330,
https://doi.org/10.1111/j.1574-6941.2008.00575.x, 2008.
Karl, D. M., Beversdorf, L., Björkman, K. M., Church, M. J., Martinez,
A., and Delong, E. F.: Aerobic production of methane in the sea, Nat.
Geosci., 1, 473–478, 2008.
Katoh, K. and Standley, D. M.: MAFFT Multiple Sequence Alignment Software
Version 7: Improvements in Performance and Usability, Mol. Biol. Evol.,
30, 772–780, https://doi.org/10.1093/molbev/mst010, 2013.
Keir, R. S., Schmale, O., Seifert, R., and Sültenfuß, J.: Isotope
fractionation and mixing in methane plumes from the Logatchev hydrothermal
field, Geochem. Geophys. Geosy., 10, Q05005, https://doi.org/10.1029/2009GC002403,
2009.
Kessler, J. D., Valentine, D. L., Redmond, M. C., Du, M., Chan, E. W.,
Mendes, S. D., Quiroz, E. W., Villanueva, C. J., Shusta, S. S., Werra, L.
M., Yvon-Lewis, S. A., and Weber, T. C.: A Persistent Oxygen Anomaly Reveals
the Fate of Spilled Methane in the Deep Gulf of Mexico, Science, 331,
312–315, https://doi.org/10.1126/science.1199697, 2011.
Kirst, G. O., Thiel, C., Wolff, H., Nothnagel, J., Wanzek, M., and Ulmke, R.:
Dimethylsulfoniopropionate (DMSP) in ice-algae and its possible biological
role, Mar. Chem., 35, 381–388, https://doi.org/10.1016/S0304-4203(09)90030-5,
1991.
Knief, C.: Diversity and Habitat Preferences of Cultivated and Uncultivated
Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker,
Front. Microbiol., 6, 1346, https://doi.org/10.3389/fmicb.2015.01346, 2015.
Knittel, K. and Boetius, A.: Anaerobic oxidation of methane: Progress with
an unknown process, Annu. Rev. Microbiol., 63, 311–334,
https://doi.org/10.1146/annurev.micro.61.080706.093130, 2009.
Krause, S. M. B., Johnson, T., Samadhi Karunaratne, Y., Fu, Y., Beck, D. A.
C., Chistoserdova, L., and Lidstrom, M. E.: Lanthanide-dependent
cross-feeding of methane-derived carbon is linked by microbial community
interactions, Proc. Natl. Acad. Sci., 114, 358–363,
https://doi.org/10.1073/pnas.1619871114, 2017.
Kvenvolden, K. A. and Rogers, B. W.: Gaia's breath – global methane
exhalations, Mar. Pet. Geol., 22, 579–590,
https://doi.org/10.1016/j.marpetgeo.2004.08.004, 2005.
Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P.
A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A., Lopez, R.,
Thompson, J. D., Gibson, T. J., and Higgins, D. G.: Clustal W and Clustal X
version 2.0, Bioinformatics, 23, 2947–2948,
https://doi.org/10.1093/bioinformatics/btm404, 2007.
Lecher, A. L., Kessler, J., Sparrow, K., Garcia-Tigreros Kodovska, F.,
Dimova, N., Murray, J., Tulaczyk, S., and Paytan, A.: Methane transport
through submarine groundwater discharge to the North Pacific and Arctic
Ocean at two Alaskan sites, Limnol. Oceanogr., 61, S344–S355,
https://doi.org/10.1002/lno.10118, 2016.
Leifer, I. and Patro, R. K.: The bubble mechanism for methane transport from
the shallow sea bed to the surface: A review and sensitivity study, Cont.
Shelf Res., 22, 2409–2428, https://doi.org/10.1016/S0278-4343(02)00065-1, 2002.
Leonte, M., Kessler, J. D., Kellermann, M. Y., Arrington, E. C., Valentine,
D. L., and Sylva, S. P.: Rapid rates of aerobic methane oxidation at the
feather edge of gas hydrate stability in the waters of Hudson Canyon, US
Atlantic Margin, Geochim. Cosmochim. Acta, 204, 375–387,
https://doi.org/10.1016/j.gca.2017.01.009, 2017.
Loose, B., Schlosser, P., Perovich, D., Ringelberg, D., Ho, D. T.,
Takahashi, T., Richter-Menge, J., Reynolds, C. M., Mcgillis, W. R., and
Tison, J.-L.: Gas diffusion through columnar laboratory sea ice:
implications for mixed-layer ventilation of CO2 in the seasonal ice
zone., Tellus B, 63, 23–39, https://doi.org/10.1111/j.1600-0889.2010.00506.x, 2011.
Lorenson, T. D. and Kvenvolden, K. A.: Methane in coastal seawater, sea ice
and bottom sediments, Beaufort Sea, Alaska: U.S. Geological Survey Open-File
Report 95–70, US Geological Survey, Menlo Park, CA, 1995.
Lorenson, T. D., Greinert, J., and Coffin, R. B.: Dissolved methane in the
Beaufort Sea and the Arctic Ocean, 1992–2009; sources and atmospheric flux:
Dissolved methane in the Beaufort Sea and the Arctic Ocean, Limnol.
Oceanogr., 61, S300–S323, https://doi.org/10.1002/lno.10457, 2016.
Love, M. I., Huber, W., and Anders, S.: Moderated estimation of fold change
and dispersion for RNA-seq data with DESeq2, Genome Biol., 15, 550, https://doi.org/10.1186/s13059-014-0550-8, 2014.
Lüke, C. and Frenzel, P.: Potential of pmoA Amplicon Pyrosequencing for
Methanotroph Diversity Studies, Appl. Environ. Microbiol., 77,
6305–6309, https://doi.org/10.1128/AEM.05355-11, 2011.
Lyew, D. and Guiot, S.: Effects of aeration and organic loading rates on
degradation of trichloroethylene in a methanogenic-methanotrophic coupled
reactor, Appl. Microbiol. Biotechnol., 61, 206–213,
https://doi.org/10.1007/s00253-003-1224-8, 2003.
Magen, C., Lapham, L. L., Pohlman, J. W., Marshall, K., Bosman, S., Casso,
M., and Chanton, J. P.: A simple headspace equilibration method for measuring
dissolved methane, Limnol. Oceanogr. Methods, 12, 637–650,
https://doi.org/10.4319/lom.2014.12.637, 2014.
Mau, S., Blees, J., Helmke, E., Niemann, H., and Damm, E.: Vertical
distribution of methane oxidation and methanotrophic response to elevated
methane concentrations in stratified waters of the Arctic fjord Storfjorden
(Svalbard, Norway), Biogeosciences, 10, 6267–6278,
https://doi.org/10.5194/bg-10-6267-2013, 2013.
Mau, S., Römer, M., Torres, M. E., Bussmann, I., Pape, T., Damm, E.,
Geprägs, P., Wintersteller, P., Hsu, C.-W., Loher, M., and Bohrmann, G.:
Widespread methane seepage along the continental margin off Svalbard – from
Bjørnøya to Kongsfjorden, Sci. Rep., 7, 42997, https://doi.org/10.1038/srep42997,
2017.
McDonald, I. R., Bodrossy, L., Chen, Y., and Murrell, J. C.: Molecular
Ecology Techniques for the Study of Aerobic Methanotrophs, Appl. Environ.
Microbiol., 74, 1305–1315, https://doi.org/10.1128/AEM.02233-07, 2008.
McKinney, C. R., McCrea, J. M., Epstein, S., Allen, H. A., and Urey, H. C.:
Improvements in mass spectrometers for the measurement of small differences
in isotope abundance ratios, Rev. Sci. Instrum., 21, 724,
https://doi.org/10.1063/1.1745698, 1950.
McMurdie, P. J. and Holmes, S.: phyloseq: An R Package for Reproducible
Interactive Analysis and Graphics of Microbiome Census Data, PLoS ONE, 8,
e61217, https://doi.org/10.1371/journal.pone.0061217, 2013.
Murrell, J. C.: The aerobic methane oxidizing bacteria (Methanotrophs), in: Handbook of Hydrocarbon and Lipid Microbiology,
edited by: Timmis, K. N., Springer Berlin Heidelberg, Berlin, Heidelberg, 1953–1966,
available at: http://link.springer.com/10.1007/978-3-540-77587-4_143 (last access: 5 January 2017), 2010.
Myhre, C. L., Ferré, B., Platt, S. M., Silyakova, A., Hermansen, O.,
Allen, G., Pisso, I., Schmidbauer, N., Stohl, A., Pitt, J., Jansson, P.,
Greinert, J., Percival, C., Fjaeraa, A. M., O'Shea, S. J., Gallagher, M., Le
Breton, M., Bower, K. N., Bauguitte, S. J. B., Dalsøren, S.,
Vadakkepuliyambatta, S., Fisher, R. E., Nisbet, E. G., Lowry, D., Myhre, G.,
Pyle, J. A., Cain, M., and Mienert, J.: Extensive release of methane from
Arctic seabed west of Svalbard during summer 2014 does not influence the
atmosphere: CH4 From Arctic Ocean to the Atmosphere, Geophys. Res.
Lett., 43, 4624–4631, https://doi.org/10.1002/2016GL068999, 2016.
Nelson, M. C., Morrison, H. G., Benjamino, J., Grim, S. L., and Graf, J.:
Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene
Amplicon Surveys, PLoS ONE, 9, e94249, https://doi.org/10.1371/journal.pone.0094249,
2014.
Oksanen, J., Blanchet, F. G., Friendly, M., Kindt, R., Legendre, P.,
McGlinn, D., Minchin, P. R., O'Hara, R. B., Simpson, G. L., Solymos, P.,
Stevens, M. H. H., Szoecs, E., and Wagner, H.: vegan: Community Ecology
Package, available at: https://CRAN.R-project.org/package=vegan (last access: 27 May 2018),
2017.
Oremland, R. S.: Methanogenic activity in plankton samples and fish
intestines: A mechanism for in situ methanogenesis in oceanic surface
waters, Limnol. Oceanogr., 24, 1136–1141, https://doi.org/10.4319/lo.1979.24.6.1136,
1979.
Overduin, P. P., Westermann, S., Yoshikawa, K., Haberlau, T., Romanovsky, V., and Wetterich, S.: Geoelectric observations of the degradation of nearshore
submarine permafrost at Barrow (Alaskan Beaufort Sea), J. Geophys. Res.
Earth Surf., 117, F02004, https://doi.org/10.1029/2011JF002088, 2012.
Pol, A., Heijmans, K., Harhangi, H. R., Tedesco, D., Jetten, M. S. M., and Op
den Camp, H. J. M.: Methanotrophy below pH 1 by a new Verrucomicrobia
species, Nature, 450, 874–878, https://doi.org/10.1038/nature06222, 2007.
Preuss, I., Knoblauch, C., Gebert, J., and Pfeiffer, E.-M.: Improved
quantification of microbial CH4 oxidation efficiency in arctic wetland soils
using carbon isotope fractionation, Biogeosciences, 10, 2539–2552,
https://doi.org/10.5194/bg-10-2539-2013, 2013.
Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P.,
Peplies, J., and Glockner, F. O.: The SILVA ribosomal RNA gene database
project: improved data processing and web-based tools, Nucleic Acids Res.,
41, D590–D596, https://doi.org/10.1093/nar/gks1219, 2013.
R CoreTeam: R: A language and Environment for Statistical Computing,
available at: http://www.r-project.org/ (last access: 27 May 2018), 2015.
Rahalkar, M., Deutzmann, J., Schink, B. and Bussmann, I.: Abundance and
Activity of Methanotrophic Bacteria in Littoral and Profundal Sediments of
Lake Constance (Germany), Appl. Environ. Microbiol., 75, 119–126,
https://doi.org/10.1128/AEM.01350-08, 2009.
Redmond, M. C., Valentine, D. L., and Sessions, A. L.: Identification of
Novel Methane-, Ethane-, and Propane-Oxidizing Bacteria at Marine
Hydrocarbon Seeps by Stable Isotope Probing, Appl. Environ. Microbiol.,
76, 6412–6422, https://doi.org/10.1128/AEM.00271-10, 2010.
Reeburgh, W. S.: Methane consumption in Cariaco Trench waters and sediments,
Earth Planet. Sci. Lett., 28, 337–344, https://doi.org/10.1016/0012-821X(76)90195-3,
1976.
Reeburgh, W. S.: Oceanic methane biogeochemistry, Chem. Rev., 107, 486–513,
2007.
Reeburgh, W. S., Ward, B. B., Whalen, S. C., Sandbeck, K. A., Kilpatrickt,
K. A., and Kerkhof, L. J.: Black Sea methane geochemistry, Deep Sea Res. Part
Oceanogr. Res. Pap., 38, S1189–S1210, https://doi.org/10.1016/S0198-0149(10)80030-5,
1991.
Repeta, D. J., Ferron, S., Sosa, O. A., Johnson, C. G., Repeta, L. D.,
Acker, M., DeLong, E. F., and Karl, D. M.: Marine methane paradox explained
by bacterial degradation of dissolved organic matter, Nat. Geosci, 9,
884–887, 2016.
Rice, P., Longden, I., and Bleasby, A.: EMBOSS: The European Molecular
Biology Open Software Suite, Trends Genet., 16, 276–277,
https://doi.org/10.1016/S0168-9525(00)02024-2, 2000.
Roslev, P., Iversen, N., and Henriksen, K.: Oxidation and assimilation of
atmospheric methane by soil methane oxidizers., Appl. Environ. Microbiol.,
63, 874–880, 1997.
Saidi-Mehrabad, A., He, Z., Tamas, I., Sharp, C. E., Brady, A. L., Rochman,
F. F., Bodrossy, L., Abell, G. C., Penner, T., Dong, X., Sensen, C. W., and
Dunfield, P. F.: Methanotrophic bacteria in oilsands tailings ponds of
northern Alberta, ISME J., 7, 908–921, https://doi.org/10.1038/ismej.2012.163, 2013.
Sansone, F. J., Popp, B. N., Gasc, A., Graham, A. W., and Rust, T. M.: Highly
elevated methane in the eastern tropical North Pacific and associated
isotopically enriched fluxes to the atmosphere, Geophys. Res. Lett., 28,
4567–4570, https://doi.org/10.1029/2001GL013460, 2001.
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M.,
Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., Robinson,
C. J., Sahl, J. W., Stres, B., Thallinger, G. G., Van Horn, D. J., and Weber,
C. F.: Introducing mothur: Open-Source, Platform-Independent,
Community-Supported Software for Describing and Comparing Microbial
Communities, Appl. Environ. Microbiol., 75, 7537–7541,
https://doi.org/10.1128/AEM.01541-09, 2009.
Schmale, O., Leifer, I., Deimling, J. S. v., Stolle, C., Krause, S.,
Kießlich, K., Frahm, A., and Treude, T.: Bubble Transport Mechanism:
Indications for a gas bubble-mediated inoculation of benthic methanotrophs
into the water column, Cont. Shelf Res., 103, 70–78,
https://doi.org/10.1016/j.csr.2015.04.022, 2015.
Semrau, J. D., DiSpirito, A. A., and Yoon, S.: Methanotrophs and copper, FEMS
Microbiol. Rev., 34, 496–531, https://doi.org/10.1111/j.1574-6976.2010.00212.x,
2010.
Shakhova, N., Semiletov, I., Salyuk, A., Yusupov, V., Kosmach, D., and
Gustafsson, Ö.: Extensive methane venting to the atmosphere from
sediments of the East Siberian Arctic shelf, Science, 327, 1246–1250,
https://doi.org/10.1126/science.1182221, 2010.
Steinle, L., Graves, C. A., Treude, T., Ferré, B., Biastoch, A.,
Bussmann, I., Berndt, C., Krastel, S., James, R. H., Behrens, E.,
Böning, C. W., Greinert, J., Sapart, C.-J., Scheinert, M., Sommer, S.,
Lehmann, M. F., and Niemann, H.: Water column methanotrophy controlled by a
rapid oceanographic switch, Nat. Geosci., 8, 378–382,
https://doi.org/10.1038/ngeo2420, 2015.
Steinle, L., Schmidt, M., Bryant, L., Haeckel, M., Linke, P., Sommer, S.,
Zopfi, J., Lehmann, M. F., Treude, T., and Niemannn, H.: Linked sediment and
water-column methanotrophy at a man-made gas blowout in the North Sea:
Implications for methane budgeting in seasonally stratified shallow seas:
Linked sediment and water methanotrophy, Limnol. Oceanogr., 61,
S367–S386, https://doi.org/10.1002/lno.10388, 2016.
Stoddard, S. F., Smith, B. J., Hein, R., Roller, B. R. K., and Schmidt, T.
M.: rrnDB: improved tools for interpreting rRNA gene abundance in bacteria
and archaea and a new foundation for future development, Nucleic Acids Res.,
43, D593–D598, https://doi.org/10.1093/nar/gku1201, 2015.
Strong, P. J., Xie, S., and Clarke, W. P.: Methane as a Resource: Can the
Methanotrophs Add Value?, Environ. Sci. Technol., 49, 4001–4018,
https://doi.org/10.1021/es504242n, 2015.
Tanaka, K., Takesue, N., Nishioka, J., Kondo, Y., Ooki, A., Kuma, K.,
Hirawake, T., and Yamashita, Y.: The conservative behavior of dissolved
organic carbon in surface waters of the southern Chukchi Sea, Arctic Ocean,
during early summer, Sci. Rep., 6, 34123, https://doi.org/10.1038/srep34123, 2016.
Tavormina, P. L., Ussler, W., and Orphan, V. J.: Planktonic and
Sediment-Associated Aerobic Methanotrophs in Two Seep Systems along the
North American Margin, Appl. Environ. Microbiol., 74, 3985–3995,
https://doi.org/10.1128/AEM.00069-08, 2008.
Thomas, D. N. and Dieckmann, G. S.: Antarctic Sea Ice–a Habitat for
Extremophiles, Science, 295, 641–644, https://doi.org/10.1126/science.1063391,
2002.
Tsunogai, U., Yoshida, N., Ishibashi, J., and Gamo, T.: Carbon isotopic
distribution of methane in deep-sea hydrothermal plume, Myojin Knoll
Caldera, Izu-Bonin arc: implications for microbial methane oxidation in the
oceans and applications to heat flux estimation, Geochim. Cosmochim. Acta,
64, 2439–2452, https://doi.org/10.1016/S0016-7037(00)00374-4, 2000.
Uhlig, C. and Loose, B.: Using stable isotopes and gas concentrations for
independent constraints on microbial methane oxidation at Arctic Ocean
temperatures: Methane oxidation rates from stable isotopes, Limnol.
Oceanogr. Methods, 15, 737–751, https://doi.org/10.1002/lom3.10199, 2017a.
Uhlig, C. and Loose, B.: Methane oxidation in Arctic seawater, Utqiagvik, Alaska.
PANGAEA, https://doi.org/10.1594/PANGAEA.874893, 2017b.
Uhlig, C. and Loose, B.: Methane concentration and stable
isotope ratios in seawater and sea ice, Utqiagvik shelf, Alaska, PANGAEA,
available at: https://doi.pangaea.de/10.1594/PANGAEA.889726 (last access: 27 May 2018), 2018.
Valentine, D. L., Blanton, D. C., Reeburgh, W. S., and Kastner, M.: Water
column methane oxidation adjacent to an area of active hydrate dissociation,
Eel river Basin, Geochim. Cosmochim. Acta, 65, 2633–2640,
https://doi.org/10.1016/S0016-7037(01)00625-1, 2001.
Valentine, D. L., Kessler, J. D., Redmond, M. C., Mendes, S. D., Heintz, M.
B., Farwell, C., Hu, L., Kinnaman, F. S., Yvon-Lewis, S., Du, M., Chan, E.
W., Tigreros, F. G., and Villanueva, C. J.: Propane respiration jump-starts
microbial response to a deep oil spill, Science, 330, 208–211,
https://doi.org/10.1126/science.1196830, 2010.
Verdugo, J., Damm, E., Snoeijs, P., Díez, B., and Farías, L.:
Climate relevant trace gases (N2O and CH4) in the Eurasian Basin
(Arctic Ocean), Deep Sea Res. Part Oceanogr. Res. Pap., 117, 84–94,
https://doi.org/10.1016/j.dsr.2016.08.016, 2016.
Vrede, K., Heldal, M., Norland, S., and Bratbak, G.: Elemental Composition
(C, N, P) and Cell Volume of Exponentially Growing and Nutrient-Limited
Bacterioplankton, Appl. Environ. Microbiol., 68, 2965–2971,
https://doi.org/10.1128/AEM.68.6.2965-2971.2002, 2002.
Wang, S. W., Budge, S. M., Gradinger, R. R., Iken, K., and Wooller, M. J.:
Fatty acid and stable isotope characteristics of sea ice and pelagic
particulate organic matter in the Bering Sea: tools for estimating sea ice
algal contribution to Arctic food web production, Oecologia, 174,
699–712, https://doi.org/10.1007/s00442-013-2832-3, 2014.
Whiticar, M. J.: Carbon and hydrogen isotope systematics of bacterial
formation and oxidation of methane, Chem. Geol., 161, 291–314,
https://doi.org/10.1016/S0009-2541(99)00092-3, 1999.
Yamamoto, S., Alcauskas, J. B., and Crozier, T. E.: Solubility of methane in
distilled water and seawater, J. Chem. Eng. Data, 21, 78–80,
https://doi.org/10.1021/je60068a029, 1976.
Zhivotchenko, A. G., Nikonova, E. S., and Jørgensen, M. H.: Copper effect
on the growth kinetics of Methylococcus capsulatus (bath), Biotechnol. Tech., 9, 163–168,
https://doi.org/10.1007/BF00157072, 1995.
Zhou, J., Tison, J.-L., Carnat, G., Geilfus, N.-X., and Delille, B.: Physical
controls on the storage of methane in landfast sea ice, The Cryosphere, 8,
1019–1029, https://doi.org/10.5194/tc-8-1019-2014, 2014.
Short summary
To improve global budgets of the greenhouse gas methane, we studied methane consumption in sea-ice-covered Arctic seawater. The microbes using methane were present in abundances < 1 % in the seawater and sea ice. They consumed methane at rates increasing with increasing methane concentrations. In addition, differences in the methane concentrations and in the types of microbes between the ice and water indicate different microbial or physical processes in the two environments.
To improve global budgets of the greenhouse gas methane, we studied methane consumption in...
Altmetrics
Final-revised paper
Preprint