Articles | Volume 15, issue 2
https://doi.org/10.5194/bg-15-581-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-15-581-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
30 Jan 2018
Research article |
| 30 Jan 2018
| 30 Jan 2018
Environmental controls on the elemental composition of a Southern Hemisphere strain of the coccolithophore Emiliania huxleyi
College of Marine and Environmental Sciences, Tianjin University of
Science and Technology, Tianjin 300457, China
Department of Botany, University of Otago, P.O. Box 56, Dunedin 9054,
New Zealand
Tianjin Key Laboratory of Marine Resources and Chemistry, Tianjin
300457, China
Tianjin Marine Environmental Protection and Restoration Technology
Engineering Center, Tianjin 300457, China
Michael Y. Roleda
Department of Botany, University of Otago, P.O. Box 56, Dunedin 9054,
New Zealand
Norwegian Institute of Bioeconomy Research, Bodø 8027, Norway
Evelyn Armstrong
Department of Chemistry, University of Otago, P.O. Box 56, Dunedin 9054, New
Zealand
Cliff S. Law
Department of Chemistry, University of Otago, P.O. Box 56, Dunedin 9054, New
Zealand
National Institute of Water and Atmospheric Research (NIWA), Greta Point, Kilbirnie, Wellington 6023, New Zealand
Philip W. Boyd
Institute for Marine and Antarctic Studies, University of Tasmania,
Hobart 7005, Tasmania, Australia
Catriona L. Hurd
Department of Botany, University of Otago, P.O. Box 56, Dunedin 9054,
New Zealand
Institute for Marine and Antarctic Studies, University of Tasmania,
Hobart 7005, Tasmania, Australia
Related authors
Chris J. Daniels, Alex J. Poulton, William M. Balch, Emilio Marañón, Tim Adey, Bruce C. Bowler, Pedro Cermeño, Anastasia Charalampopoulou, David W. Crawford, Dave Drapeau, Yuanyuan Feng, Ana Fernández, Emilio Fernández, Glaucia M. Fragoso, Natalia González, Lisa M. Graziano, Rachel Heslop, Patrick M. Holligan, Jason Hopkins, María Huete-Ortega, David A. Hutchins, Phoebe J. Lam, Michael S. Lipsen, Daffne C. López-Sandoval, Socratis Loucaides, Adrian Marchetti, Kyle M. J. Mayers, Andrew P. Rees, Cristina Sobrino, Eithne Tynan, and Toby Tyrrell
Earth Syst. Sci. Data, 10, 1859–1876, https://doi.org/10.5194/essd-10-1859-2018, https://doi.org/10.5194/essd-10-1859-2018, 2018
Short summary
Short summary
Calcifying marine algae (coccolithophores) are key to oceanic biogeochemical processes, such as calcium carbonate production and export. We compile a global database of calcium carbonate production from field samples (n = 2756), alongside primary production rates and coccolithophore abundance. Basic statistical analysis highlights global distribution, average surface and integrated rates, patterns with depth and the importance of considering cell-normalised rates as a simple physiological index.
Brandon Stephens, Montserrat Roca-Martí, Amy Maas, Vinícius Amaral, Samantha Clevenger, Shawnee Traylor, Claudia Benitez-Nelson, Philip Boyd, Ken Buesseler, Craig Carlson, Nicolas Cassar, Margaret Estapa, Andrea Fassbender, Yibin Huang, Phoebe Lam, Olivier Marchal, Susanne Menden-Deuer, Nicola Paul, Alyson Santoro, David Siegel, and David Nicholson
EGUsphere, https://doi.org/10.5194/egusphere-2024-2251, https://doi.org/10.5194/egusphere-2024-2251, 2024
Short summary
Short summary
The ocean’s mesopelagic zone (MZ) plays a crucial role in the global carbon cycle. This study combines new and previously published measurements of organic carbon supply and demand collected in August 2018 for the MZ in the subarctic North Pacific Ocean. Supply was insufficient to meet demand in August, but supply entering into the MZ in the spring of 2018 could have met the August demand. Results suggest observations over seasonal time scales may help to close MZ carbon budgets.
David T. Ho, Laurent Bopp, Jaime B. Palter, Matthew C. Long, Philip W. Boyd, Griet Neukermans, and Lennart T. Bach
State Planet, 2-oae2023, 12, https://doi.org/10.5194/sp-2-oae2023-12-2023, https://doi.org/10.5194/sp-2-oae2023-12-2023, 2023
Short summary
Short summary
Monitoring, reporting, and verification (MRV) refers to the multistep process to quantify the amount of carbon dioxide removed by a carbon dioxide removal (CDR) activity. Here, we make recommendations for MRV for Ocean Alkalinity Enhancement (OAE) research, arguing that it has an obligation for comprehensiveness, reproducibility, and transparency, as it may become the foundation for assessing large-scale deployment. Both observations and numerical simulations will be needed for MRV.
Karine Sellegri, Theresa Barthelmeß, Jonathan Trueblood, Antonia Cristi, Evelyn Freney, Clémence Rose, Neill Barr, Mike Harvey, Karl Safi, Stacy Deppeler, Karen Thompson, Wayne Dillon, Anja Engel, and Cliff Law
Atmos. Chem. Phys., 23, 12949–12964, https://doi.org/10.5194/acp-23-12949-2023, https://doi.org/10.5194/acp-23-12949-2023, 2023
Short summary
Short summary
The amount of sea spray emitted to the atmosphere depends on the ocean temperature, but this dependency is not well understood, especially when ocean biology is involved. In this study, we show that sea spray emissions are increased by up to a factor of 4 at low seawater temperatures compared to moderate temperatures, and we quantify the temperature dependence as a function of the ocean biogeochemistry.
Manon Rocco, Erin Dunne, Alexia Saint-Macary, Maija Peltola, Theresa Barthelmeß, Neill Barr, Karl Safi, Andrew Marriner, Stacy Deppeler, James Harnwell, Anja Engel, Aurélie Colomb, Alfonso Saiz-Lopez, Mike Harvey, Cliff S. Law, and Karine Sellegri
EGUsphere, https://doi.org/10.5194/egusphere-2023-516, https://doi.org/10.5194/egusphere-2023-516, 2023
Preprint archived
Short summary
Short summary
During the Sea2cloud campaign in the Southern Pacific Ocean, we measured air-sea emissions from phytopankton of two key atmospheric compounds: DMS and MeSH. These compounds are well-known to play a great role in atmospheric chemistry and climate. We see in this paper that these compounds are most emited by the nanophytoplankton population. We provide here parameters for climate models to predict future trends of the emissions of these compounds and their roles and impacts on the global warming.
Alexia D. Saint-Macary, Andrew Marriner, Theresa Barthelmeß, Stacy Deppeler, Karl Safi, Rafael Costa Santana, Mike Harvey, and Cliff S. Law
Ocean Sci., 19, 1–15, https://doi.org/10.5194/os-19-1-2023, https://doi.org/10.5194/os-19-1-2023, 2023
Short summary
Short summary
The uppermost oceanic layer was sampled to determine what can explain a potential dimethyl sulfide (DMS) enrichment in this environment. A novel sampling method was used, and the results showed that DMS was not as enriched as expected. Our results showed that the phytoplanktonic composition influenced the DMS concentration, confirming results from another study in this oceanic region. However, additional factors are required to observe a DMS enrichment in the uppermost oceanic layer.
Alexia D. Saint-Macary, Andrew Marriner, Stacy Deppeler, Karl A. Safi, and Cliff S. Law
Ocean Sci., 18, 1559–1571, https://doi.org/10.5194/os-18-1559-2022, https://doi.org/10.5194/os-18-1559-2022, 2022
Short summary
Short summary
To understand how dimethyl sulfide (DMS) enrichment is maintained in the sea surface microlayer (SML) while DMS is lost to the atmosphere, deck-board incubation was carried out to determine DMS sources and sinks. Our results showed that the phytoplankton composition played an essential role in DMS processes in the SML. However, all accumulated DMS processes were lower than the calculated air–sea DMS flux.
Jesse M. Vance, Kim Currie, John Zeldis, Peter W. Dillingham, and Cliff S. Law
Biogeosciences, 19, 241–269, https://doi.org/10.5194/bg-19-241-2022, https://doi.org/10.5194/bg-19-241-2022, 2022
Short summary
Short summary
Long-term monitoring is needed to detect changes in our environment. Time series of ocean carbon have aided our understanding of seasonal cycles and provided evidence for ocean acidification. Data gaps are inevitable, yet no standard method for filling gaps exists. We present a regression approach here and compare it to seven other common methods to understand the impact of different approaches when assessing seasonal to climatic variability in ocean carbon.
Stefanie Kremser, Mike Harvey, Peter Kuma, Sean Hartery, Alexia Saint-Macary, John McGregor, Alex Schuddeboom, Marc von Hobe, Sinikka T. Lennartz, Alex Geddes, Richard Querel, Adrian McDonald, Maija Peltola, Karine Sellegri, Israel Silber, Cliff S. Law, Connor J. Flynn, Andrew Marriner, Thomas C. J. Hill, Paul J. DeMott, Carson C. Hume, Graeme Plank, Geoffrey Graham, and Simon Parsons
Earth Syst. Sci. Data, 13, 3115–3153, https://doi.org/10.5194/essd-13-3115-2021, https://doi.org/10.5194/essd-13-3115-2021, 2021
Short summary
Short summary
Aerosol–cloud interactions over the Southern Ocean are poorly understood and remain a major source of uncertainty in climate models. This study presents ship-borne measurements, collected during a 6-week voyage into the Southern Ocean in 2018, that are an important supplement to satellite-based measurements. For example, these measurements include data on low-level clouds and aerosol composition in the marine boundary layer, which can be used in climate model evaluation efforts.
Fuminori Hashihama, Hiroaki Saito, Taketoshi Kodama, Saori Yasui-Tamura, Jota Kanda, Iwao Tanita, Hiroshi Ogawa, E. Malcolm S. Woodward, Philip W. Boyd, and Ken Furuya
Biogeosciences, 18, 897–915, https://doi.org/10.5194/bg-18-897-2021, https://doi.org/10.5194/bg-18-897-2021, 2021
Short summary
Short summary
We investigated the nutrient assimilation characteristics of deep-water-induced phytoplankton blooms across the subtropical North and South Pacific Ocean. Nutrient drawdown ratios of dissolved inorganic nitrogen to phosphate were anomalously low in the western North Pacific, likely due to the high phosphate uptake capability of low-phosphate-adapted phytoplankton. The anomalous phosphate uptake might influence the maintenance of chronic phosphate depletion in the western North Pacific.
Luke T. Cravigan, Marc D. Mallet, Petri Vaattovaara, Mike J. Harvey, Cliff S. Law, Robin L. Modini, Lynn M. Russell, Ed Stelcer, David D. Cohen, Greg Olsen, Karl Safi, Timothy J. Burrell, and Zoran Ristovski
Atmos. Chem. Phys., 20, 7955–7977, https://doi.org/10.5194/acp-20-7955-2020, https://doi.org/10.5194/acp-20-7955-2020, 2020
Short summary
Short summary
Aerosol–cloud interactions in remote marine environments are poorly represented in atmospheric modelling, particularly over the Southern Hemisphere. This work reports in situ chamber observations of sea spray aerosol composition and water uptake during the Surface Ocean Aerosol Production (SOAP) voyage. Observations were compared with currently applied models for sea spray organic enrichment. The sea spray hygroscopicity was persistently high, even at high organic fractions.
Sinikka T. Lennartz, Christa A. Marandino, Marc von Hobe, Meinrat O. Andreae, Kazushi Aranami, Elliot Atlas, Max Berkelhammer, Heinz Bingemer, Dennis Booge, Gregory Cutter, Pau Cortes, Stefanie Kremser, Cliff S. Law, Andrew Marriner, Rafel Simó, Birgit Quack, Günther Uher, Huixiang Xie, and Xiaobin Xu
Earth Syst. Sci. Data, 12, 591–609, https://doi.org/10.5194/essd-12-591-2020, https://doi.org/10.5194/essd-12-591-2020, 2020
Short summary
Short summary
Sulfur-containing trace gases in the atmosphere influence atmospheric chemistry and the energy budget of the Earth by forming aerosols. The ocean is an important source of the most abundant sulfur gas in the atmosphere, carbonyl sulfide (OCS) and its most important precursor carbon disulfide (CS2). In order to assess global variability of the sea surface concentrations of both gases to calculate their oceanic emissions, we have compiled a database of existing shipborne measurements.
Sarah J. Lawson, Cliff S. Law, Mike J. Harvey, Thomas G. Bell, Carolyn F. Walker, Warren J. de Bruyn, and Eric S. Saltzman
Atmos. Chem. Phys., 20, 3061–3078, https://doi.org/10.5194/acp-20-3061-2020, https://doi.org/10.5194/acp-20-3061-2020, 2020
Short summary
Short summary
Methanethiol (MeSH) is a reduced sulfur gas originating from phytoplankton, with a global ocean source of ~ 17 % of dimethyl sulfide (DMS). It has been little studied and is rarely observed over the ocean. In this work, MeSH was measured at much higher levels than previously observed (3–36 % of parallel DMS mixing ratios). MeSH could be a significant source of atmospheric sulfur over productive regions of the ocean, but its distribution, and its atmospheric impact, requires more investigation.
Christina Schallenberg, Robert F. Strzepek, Nina Schuback, Lesley A. Clementson, Philip W. Boyd, and Thomas W. Trull
Biogeosciences, 17, 793–812, https://doi.org/10.5194/bg-17-793-2020, https://doi.org/10.5194/bg-17-793-2020, 2020
Short summary
Short summary
Measurements of phytoplankton health still require the use of research vessels and are thus costly and sparse. In this paper we propose a new way to assess the health of phytoplankton using simple fluorescence measurements, which can be made autonomously. In the Southern Ocean, where the most limiting nutrient for phytoplankton is iron, we found a relationship between iron limitation and the depression of fluorescence under high light, the so-called non-photochemical quenching of fluorescence.
Chris J. Daniels, Alex J. Poulton, William M. Balch, Emilio Marañón, Tim Adey, Bruce C. Bowler, Pedro Cermeño, Anastasia Charalampopoulou, David W. Crawford, Dave Drapeau, Yuanyuan Feng, Ana Fernández, Emilio Fernández, Glaucia M. Fragoso, Natalia González, Lisa M. Graziano, Rachel Heslop, Patrick M. Holligan, Jason Hopkins, María Huete-Ortega, David A. Hutchins, Phoebe J. Lam, Michael S. Lipsen, Daffne C. López-Sandoval, Socratis Loucaides, Adrian Marchetti, Kyle M. J. Mayers, Andrew P. Rees, Cristina Sobrino, Eithne Tynan, and Toby Tyrrell
Earth Syst. Sci. Data, 10, 1859–1876, https://doi.org/10.5194/essd-10-1859-2018, https://doi.org/10.5194/essd-10-1859-2018, 2018
Short summary
Short summary
Calcifying marine algae (coccolithophores) are key to oceanic biogeochemical processes, such as calcium carbonate production and export. We compile a global database of calcium carbonate production from field samples (n = 2756), alongside primary production rates and coccolithophore abundance. Basic statistical analysis highlights global distribution, average surface and integrated rates, patterns with depth and the importance of considering cell-normalised rates as a simple physiological index.
Samuel T. Wilson, Hermann W. Bange, Damian L. Arévalo-Martínez, Jonathan Barnes, Alberto V. Borges, Ian Brown, John L. Bullister, Macarena Burgos, David W. Capelle, Michael Casso, Mercedes de la Paz, Laura Farías, Lindsay Fenwick, Sara Ferrón, Gerardo Garcia, Michael Glockzin, David M. Karl, Annette Kock, Sarah Laperriere, Cliff S. Law, Cara C. Manning, Andrew Marriner, Jukka-Pekka Myllykangas, John W. Pohlman, Andrew P. Rees, Alyson E. Santoro, Philippe D. Tortell, Robert C. Upstill-Goddard, David P. Wisegarver, Gui-Ling Zhang, and Gregor Rehder
Biogeosciences, 15, 5891–5907, https://doi.org/10.5194/bg-15-5891-2018, https://doi.org/10.5194/bg-15-5891-2018, 2018
Short summary
Short summary
To determine the variability between independent measurements of dissolved methane and nitrous oxide, seawater samples were analyzed by multiple laboratories. The results revealed the influences of the different parts of the analytical process, from the initial sample collection to the calculation of the final concentrations. Recommendations are made to improve dissolved methane and nitrous oxide measurements to help preclude future analytical discrepancies between laboratories.
Murray J. Smith, Carolyn F. Walker, Thomas G. Bell, Mike J. Harvey, Eric S. Saltzman, and Cliff S. Law
Atmos. Chem. Phys., 18, 5861–5877, https://doi.org/10.5194/acp-18-5861-2018, https://doi.org/10.5194/acp-18-5861-2018, 2018
Short summary
Short summary
The transfer of gases across the air–sea interface has a significant influence on climate. During a research voyage in the South Pacific we measured the transfer rate of the biogenic gas dimethyl sulfide (DMS) from the ocean using two independent methods. The agreement between the techniques provides confidence in their use in compilations of global gas transfer. We also identified physical conditions under which the observations are not well predicted by a standard gas transfer model.
Martine Lizotte, Maurice Levasseur, Cliff S. Law, Carolyn F. Walker, Karl A. Safi, Andrew Marriner, and Ronald P. Kiene
Ocean Sci., 13, 961–982, https://doi.org/10.5194/os-13-961-2017, https://doi.org/10.5194/os-13-961-2017, 2017
Short summary
Short summary
During a 4-week oceanographic cruise in 2012, we investigated the water masses bordering the subtropical front near New Zealand as sources of the biogenic gas dimethyl sulfide (DMS). DMS oxidation products may influence the atmospheric radiative budget of the Earth. Concentrations of DMS were high in the study region and DMS's precursor, dimethylsulfoniopropionate, showed a strong association with phytoplankton biomass in relation to the persistent dominance of dinoflagellates/coccolithophores.
Cliff S. Law, Murray J. Smith, Mike J. Harvey, Thomas G. Bell, Luke T. Cravigan, Fiona C. Elliott, Sarah J. Lawson, Martine Lizotte, Andrew Marriner, John McGregor, Zoran Ristovski, Karl A. Safi, Eric S. Saltzman, Petri Vaattovaara, and Carolyn F. Walker
Atmos. Chem. Phys., 17, 13645–13667, https://doi.org/10.5194/acp-17-13645-2017, https://doi.org/10.5194/acp-17-13645-2017, 2017
Short summary
Short summary
We carried out a multidisciplinary study to examine how aerosol production is influenced by the production and emission of trace gases and particles in the surface ocean. Phytoplankton blooms of different species composition in frontal waters southeast of New Zealand were a significant source of dimethylsulfide and other aerosol precursors. The relationships between surface ocean biogeochemistry and aerosol composition will inform the understanding of aerosol production over the remote ocean.
Carolyn F. Walker, Mike J. Harvey, Murray J. Smith, Thomas G. Bell, Eric S. Saltzman, Andrew S. Marriner, John A. McGregor, and Cliff S. Law
Ocean Sci., 12, 1033–1048, https://doi.org/10.5194/os-12-1033-2016, https://doi.org/10.5194/os-12-1033-2016, 2016
Timothy J. Burrell, Elizabeth W. Maas, Paul Teesdale-Spittle, and Cliff S. Law
Biogeosciences, 13, 4379–4388, https://doi.org/10.5194/bg-13-4379-2016, https://doi.org/10.5194/bg-13-4379-2016, 2016
Short summary
Short summary
Bacterial extracellular enzymes play a significant role in the degradation of organic matter in the open ocean. Using artificial fluorogenic substrates, this research highlights potential artefacts in the response of bacterial glucosidase and aminopeptidase to ocean acidification, and the effects of three different acidification techniques. We conclude that fluorogenic substrate degradation is affected by, or alters pH, and bubbling CO2 may lead to the overestimation of carbohydrate degradation.
T. J. Burrell, E. W. Maas, P. Teesdale-Spittle, and C. S. Law
Biogeosciences Discuss., https://doi.org/10.5194/bgd-12-5841-2015, https://doi.org/10.5194/bgd-12-5841-2015, 2015
Manuscript not accepted for further review
Short summary
Short summary
pH has a significant effect on the artificial fluorophore for glucosidase and protease activity, while artificial aminopeptidase substrate alters the pH of seawater. Reduction of coastal seawater pH to 7.8 was shown to increase β-glucosidase activity rapidly (0.5h), while no significant response was detected for leucine aminopeptidase. Seawater acidified by bubbling CO2 gas resulted in elevated β-glucosidase activity and bacterial cell numbers, although seasonal effects were observed.
T. G. Bell, W. De Bruyn, C. A. Marandino, S. D. Miller, C. S. Law, M. J. Smith, and E. S. Saltzman
Atmos. Chem. Phys., 15, 1783–1794, https://doi.org/10.5194/acp-15-1783-2015, https://doi.org/10.5194/acp-15-1783-2015, 2015
Related subject area
Biogeochemistry: Environmental Microbiology
Ideas and perspectives: Microorganisms in the air through the lenses of atmospheric chemistry and microphysics
Clouds influence the functioning of airborne microorganisms
Effects of surface water interactions with karst groundwater on microbial biomass, metabolism, and production
Overview: Global change effects on terrestrial biogeochemistry at the plant–soil interface
Grazing mortality as a controlling factor in the uncultured non-cyanobacterial diazotroph (Gamma A) around the Kuroshio region
Changes in diazotrophic community structure associated with Kuroshio succession in the northern South China Sea
Animal burrowing at cold seep ecotones boosts productivity by linking macromolecule turnover with chemosynthesis and nutrient cycling
Technical note: Flow cytometry assays for the detection, counting and cell-sorting of polyphosphate-accumulating bacteria
Technical note: A comparison of methods for estimating coccolith mass
Fractionation of stable carbon isotopes during formate consumption in anoxic rice paddy soils and lake sediments
Characteristics of bacterial and fungal communities and their associations with sugar compounds in atmospheric aerosols at a rural site in northern China
Responses of globally important phytoplankton species to olivine dissolution products and implications for carbon dioxide removal via ocean alkalinity enhancement
Differentiation of cognate bacterial communities in thermokarst landscapes: implications for ecological consequences of permafrost degradation
A multi-phase biogeochemical model for mitigating earthquake-induced liquefaction via microbially induced desaturation and calcium carbonate precipitation
Phosphorus regulates ectomycorrhizal fungi biomass production in a Norway spruce forest
Reallocation of elemental content and macromolecules in the coccolithophore Emiliania huxleyi to acclimate to climate change
Abrasion of sedimentary rocks as a source of hydrogen peroxide and nutrients to subglacial ecosystems
Nitrous oxide (N2O) synthesis by the freshwater cyanobacterium Microcystis aeruginosa
Interdisciplinary strategy to assess the impact of meteorological variables on the biochemical composition of the rain and the dynamics of a small eutrophic lake under rain forcing
Depth-related patterns in microbial community responses to complex organic matter in the western North Atlantic Ocean
Assessing the influence of ocean alkalinity enhancement on a coastal phytoplankton community
Eddy-enhanced primary production sustains heterotrophic microbial activities in the Eastern Tropical North Atlantic
Composition and niche-specific characteristics of microbial consortia colonizing Marsberg copper mine in the Rhenish Massif
Diversity and assembly processes of microbial eukaryotic communities in Fildes Peninsula Lakes (West Antarctica)
Nitrophobic ectomycorrhizal fungi are associated with enhanced hydrophobicity of soil organic matter in a Norway spruce forest
Physiological control on carbon isotope fractionation in marine phytoplankton
Implementation of mycorrhizal mechanisms into soil carbon model improves the prediction of long-term processes of plant litter decomposition
Impact of dust addition on the microbial food web under present and future conditions of pH and temperature
Fractionation of stable carbon isotopes during acetate consumption by methanogenic and sulfidogenic microbial communities in rice paddy soils and lake sediments
Hydrothermal trace metal release and microbial metabolism in the northeastern Lau Basin of the South Pacific Ocean
Sedimentation rate and organic matter dynamics shape microbiomes across a continental margin
Disturbance triggers non-linear microbe–environment feedbacks
Hydrographic fronts shape productivity, nitrogen fixation, and microbial community composition in the southern Indian Ocean and the Southern Ocean
Microbial and geo-archaeological records reveal the growth rate, origin and composition of desert rock surface communities
Metagenomic insights into the metabolism of microbial communities that mediate iron and methane cycling in Lake Kinneret iron-rich methanic sediments
Spatiotemporal patterns of N2 fixation in coastal waters derived from rate measurements and remote sensing
Biotic and abiotic transformation of amino acids in cloud water: experimental studies and atmospheric implications
Potential bioavailability of organic matter from atmospheric particles to marine heterotrophic bacteria
Microbial functional signature in the atmospheric boundary layer
New insight to niche partitioning and ecological function of ammonia oxidizing archaea in subtropical estuarine ecosystem
Impact of reactive surfaces on the abiotic reaction between nitrite and ferrous iron and associated nitrogen and oxygen isotope dynamics
Reviews and syntheses: Bacterial bioluminescence – ecology and impact in the biological carbon pump
Salinity-dependent algae uptake and subsequent carbon and nitrogen metabolisms of two intertidal foraminifera (Ammonia tepida and Haynesina germanica)
On giant shoulders: how a seamount affects the microbial community composition of seawater and sponges
Spatial variations in sedimentary N-transformation rates in the North Sea (German Bight)
Patterns of (trace) metals and microorganisms in the Rainbow hydrothermal vent plume at the Mid-Atlantic Ridge
Co-occurrence of Fe and P stress in natural populations of the marine diazotroph Trichodesmium
Senescence as the main driver of iodide release from a diverse range of marine phytoplankton
Reviews and syntheses: Biological weathering and its consequences at different spatial levels – from nanoscale to global scale
Deep-sea sponge grounds as nutrient sinks: denitrification is common in boreo-Arctic sponges
Barbara Ervens, Pierre Amato, Kifle Aregahegn, Muriel Joly, Amina Khaled, Tiphaine Labed-Veydert, Frédéric Mathonat, Leslie Nuñez López, Raphaëlle Péguilhan, and Minghui Zhang
Biogeosciences, 22, 243–256, https://doi.org/10.5194/bg-22-243-2025, https://doi.org/10.5194/bg-22-243-2025, 2025
Short summary
Short summary
Atmospheric microorganisms are a small fraction of Earth's microbiome, with bacteria being a significant part. Aerosolized bacteria are airborne for a few days, encountering unique chemical and physical conditions affecting stress levels and survival. We explore chemical and microphysical conditions bacteria encounter, highlighting potential nutrient and oxidant limitations and diverse effects by pollutants, which may ultimately impact the microbiome's role in global ecosystems and biodiversity.
Raphaëlle Péguilhan, Florent Rossi, Muriel Joly, Engy Nasr, Bérénice Batut, François Enault, Barbara Ervens, and Pierre Amato
EGUsphere, https://doi.org/10.5194/egusphere-2024-2338, https://doi.org/10.5194/egusphere-2024-2338, 2024
Short summary
Short summary
Using comparative metagenomics/metatranscriptomics, we examined the functioning of airborne microorganisms in clouds and clear atmosphere; clouds are atmospheric volumes where multiple microbial processes are promoted compared with clear atmosphere; Overrepresented microbial functions of interest include the processing of chemical compounds, biomass production and the regulation of oxidants; - this has implications for biogeochemical cycles and microbial ecology.
Adrian Barry-Sosa, Madison K. Flint, Justin C. Ellena, Jonathan B. Martin, and Brent C. Christner
Biogeosciences, 21, 3965–3984, https://doi.org/10.5194/bg-21-3965-2024, https://doi.org/10.5194/bg-21-3965-2024, 2024
Short summary
Short summary
This study examined springs in north central Florida focusing on how interactions between the surface and subsurface affected the properties of groundwater microbes. We found that microbes reproduced at rates that greatly exceed those documented for any other aquifer. Although the groundwater discharged to spring runs contains low concentrations of nutrients, our results indicate that microbes have access to sources of energy and produce new cells at rates similar to surface waterbodies.
Lucia Fuchslueger, Emily Francesca Solly, Alberto Canarini, and Albert Carles Brangarí
Biogeosciences, 21, 3959–3964, https://doi.org/10.5194/bg-21-3959-2024, https://doi.org/10.5194/bg-21-3959-2024, 2024
Short summary
Short summary
This overview of the special issue “Global change effects on terrestrial biogeochemistry at the plant–soil interface” features empirical, conceptual and modelling-based studies and outlines key findings on plant responses to elevated CO2; soil organism responses to warming; impacts on soil organic carbon, nitrogen and mineral nutrient cycling; and water level changes affecting greenhouse gas emissions, from the Arctic to the tropics, which are crucial for deciphering feedbacks to global change.
Takuya Sato, Tamaha Yamaguchi, Kiyotaka Hidataka, Sayaka Sogawa, Takashi Setou, Taketoshi Kodama, Takuhei Shiozaki, and Kazutaka Takahashi
EGUsphere, https://doi.org/10.5194/egusphere-2024-1294, https://doi.org/10.5194/egusphere-2024-1294, 2024
Short summary
Short summary
Gamma A is a widespread non-cyanobacterial diazotroph and plays a crucial role for marine ecosystems, but its controlling factors are still largely unknown. This study, for the first time, quantified microzooplankton grazing on Gamma A and revealed significance of grazing pressure on Gamma A distribution around the Kuroshio region. It highlights the importance of top-down controls on Gamma A abundance and the associated nitrogen cycle.
Han Zhang, Guangming Mai, Weicheng Luo, Meng Chen, Ran Duan, and Tuo Shi
Biogeosciences, 21, 2529–2546, https://doi.org/10.5194/bg-21-2529-2024, https://doi.org/10.5194/bg-21-2529-2024, 2024
Short summary
Short summary
We report taxon-specific biogeography of N2-fixing microbes (diazotrophs) driven by Kuroshio intrusion (Kl) into the South China Sea. We show that the composition and distribution of distinct diazotrophic taxa shift with Kl-induced variations in physicochemical parameters of seawater and that Kl shapes diazotrophic community primarily as a stochastic process. This study thus has implications for the distribution of diazotrophs in a future warming ocean, as Kls are projected to intensify.
Maxim Rubin-Blum, Eyal Rahav, Guy Sisma-Ventura, Yana Yudkovski, Zoya Harbozov, Or Bialik, Oded Ezra, Anneleen Foubert, Barak Herut, and Yizhaq Makovsky
EGUsphere, https://doi.org/10.5194/egusphere-2024-1285, https://doi.org/10.5194/egusphere-2024-1285, 2024
Short summary
Short summary
Geochemical cycles and biodiversity are altered at transition zones of chemosynthetic ecosystems, chemotones. We asked if burrowing alters the functionality of these habitats. We surveyed the seafloor, analyzed sediment properties, and explored microbial communities in ghost shrimp burrows. We made an exciting discovery of chemosynthetic biofilms, linking them to macromolecule turnover and nutrient cycling, using metagenomics. This phenomenon may play an important role in biogeochemical cycles.
Clémentin Bouquet, Hermine Billard, Cécile Bidaud, Jonathan Colombet, Young-Tae Chang, Karim Benzerara, Fériel Skouri-Panet, Elodie Duprat, and Anne-Catherine Lehours
EGUsphere, https://doi.org/10.5194/egusphere-2024-1085, https://doi.org/10.5194/egusphere-2024-1085, 2024
Short summary
Short summary
In the context of the ecological sustainability of phosphorus (P), the ubiquitous presence of polyphosphate-accumulating bacteria (PAB) in natural environments invites efforts to reveal their unknown roles in the biogeochemical cycle of P. In this study, we provide a generic protocol for the detection, quantification, and cell sorting of PAB by combining efficient staining of intracellular polyphosphate (polyP) granules in PAB and their subsequent detection by flow cytometry.
Celina Rebeca Valença, Luc Beaufort, Gustaaf Marinus Hallegraeff, and Marius Nils Müller
Biogeosciences, 21, 1601–1611, https://doi.org/10.5194/bg-21-1601-2024, https://doi.org/10.5194/bg-21-1601-2024, 2024
Short summary
Short summary
Coccolithophores contribute to the global carbon cycle and their calcite structures (coccoliths) are used as a palaeoproxy to understand past oceanographic conditions. Here, we compared three frequently used methods to estimate coccolith mass from the model species Emiliania huxleyi and the results allow for a high level of comparability between the methods, facilitating future comparisons and consolidation of mass changes observed from ecophysiological and biogeochemical studies.
Ralf Conrad and Peter Claus
Biogeosciences, 21, 1161–1172, https://doi.org/10.5194/bg-21-1161-2024, https://doi.org/10.5194/bg-21-1161-2024, 2024
Short summary
Short summary
Knowledge of carbon isotope fractionation is important for the assessment of the pathways involved in the degradation of organic matter. Formate is an important intermediate during this process. It was mainly converted to carbon dioxide and acetate both in the presence and absence of sulfate. Methane was only a minor product and was mainly formed from the acetate. The acetate was depleted in the heavy carbon atom relative to formate, while the carbon dioxide was enriched.
Mutong Niu, Shu Huang, Wei Hu, Yajie Wang, Wanyun Xu, Wan Wei, Qiang Zhang, Zihan Wang, Donghuan Zhang, Rui Jin, Libin Wu, Junjun Deng, Fangxia Shen, and Pingqing Fu
Biogeosciences, 20, 4915–4930, https://doi.org/10.5194/bg-20-4915-2023, https://doi.org/10.5194/bg-20-4915-2023, 2023
Short summary
Short summary
Sugar compounds in air can trace the source of bioaerosols that affect public health and climate. In rural north China, we observed increased fungal activity at night and less variable bacterial community diversity. Certain night-increasing sugar compounds were more closely related to fungi than bacteria. The fungal community greatly influenced sugar compounds, while bacteria played a limited role. Caution is advised when using sugar compounds to trace airborne microbes, particularly bacteria.
David A. Hutchins, Fei-Xue Fu, Shun-Chung Yang, Seth G. John, Stephen J. Romaniello, M. Grace Andrews, and Nathan G. Walworth
Biogeosciences, 20, 4669–4682, https://doi.org/10.5194/bg-20-4669-2023, https://doi.org/10.5194/bg-20-4669-2023, 2023
Short summary
Short summary
Applications of the mineral olivine are a promising means to capture carbon dioxide via coastal enhanced weathering, but little is known about the impacts on important marine phytoplankton. We examined the effects of olivine dissolution products on species from three major phytoplankton groups: diatoms, coccolithophores, and cyanobacteria. Growth and productivity were generally either unaffected or stimulated, suggesting the effects of olivine on key phytoplankton are negligible or positive.
Ze Ren, Shudan Ye, Hongxuan Li, Xilei Huang, and Luyao Chen
Biogeosciences, 20, 4241–4258, https://doi.org/10.5194/bg-20-4241-2023, https://doi.org/10.5194/bg-20-4241-2023, 2023
Short summary
Short summary
Permafrost thaw initiates thermokarst landscape formation, resulting in distinct new habitats, including degraded permafrost soil, thermokarst lake sediments, and lake water. These distinct habitats harbored differentiated bacterial communities that originated from the same source, differing in diversity, assembly mechanisms, and environmental influences. The results imply ecological consequences of permafrost degradation in the face of further climate change.
Caitlyn A. Hall, Andre van Turnhout, Edward Kavazanjian Jr., Leon A. van Paassen, and Bruce Rittmann
Biogeosciences, 20, 2903–2917, https://doi.org/10.5194/bg-20-2903-2023, https://doi.org/10.5194/bg-20-2903-2023, 2023
Short summary
Short summary
Earthquake-induced soil liquefaction poses a significant global threat. Microbially induced desaturation and precipitation (MIDP) via denitrification is a potentially sustainable, non-disruptive bacteria-driven ground improvement technique under existing structures. We developed a next-generation biogeochemical model to understand and predict the behavior of MIDP in the natural environment to design field-based hazard mitigation treatments.
Juan Pablo Almeida, Lorenzo Menichetti, Alf Ekblad, Nicholas P. Rosenstock, and Håkan Wallander
Biogeosciences, 20, 1443–1458, https://doi.org/10.5194/bg-20-1443-2023, https://doi.org/10.5194/bg-20-1443-2023, 2023
Short summary
Short summary
In forests, trees allocate a significant amount of carbon belowground to support mycorrhizal symbiosis. In northern forests nitrogen normally regulates this allocation and consequently mycorrhizal fungi growth. In this study we demonstrate that in a conifer forest from Sweden, fungal growth is regulated by phosphorus instead of nitrogen. This is probably due to an increase in nitrogen deposition to soils caused by decades of human pollution that has altered the ecosystem nutrient regime.
Yong Zhang, Yong Zhang, Shuai Ma, Hanbing Chen, Jiabing Li, Zhengke Li, Kui Xu, Ruiping Huang, Hong Zhang, Yonghe Han, and Jun Sun
Biogeosciences, 20, 1299–1312, https://doi.org/10.5194/bg-20-1299-2023, https://doi.org/10.5194/bg-20-1299-2023, 2023
Short summary
Short summary
We found that increasing light intensity compensates for the negative effects of low phosphorus (P) availability on cellular protein and nitrogen contents. Reduced P availability, increasing light intensity, and ocean acidification act synergistically to increase cellular contents of carbohydrate and POC and the allocation of POC to carbohydrate. These regulation mechanisms in Emiliania huxleyi could provide vital information for evaluating carbon cycle in marine ecosystems under global change.
Beatriz Gill-Olivas, Jon Telling, Mark Skidmore, and Martyn Tranter
Biogeosciences, 20, 929–943, https://doi.org/10.5194/bg-20-929-2023, https://doi.org/10.5194/bg-20-929-2023, 2023
Short summary
Short summary
Microbial ecosystems have been found in all subglacial environments sampled to date. Yet, little is known of the sources of energy and nutrients that sustain these microbial populations. This study shows that crushing of sedimentary rocks, which contain organic carbon, carbonate and sulfide minerals, along with previously weathered silicate minerals, produces a range of compounds and nutrients which can be utilised by the diverse suite of microbes that inhabit glacier beds.
Federico Fabisik, Benoit Guieysse, Jonathan Procter, and Maxence Plouviez
Biogeosciences, 20, 687–693, https://doi.org/10.5194/bg-20-687-2023, https://doi.org/10.5194/bg-20-687-2023, 2023
Short summary
Short summary
We show, for the first time, that pure cultures of the cyanobacterium Microcystis aeruginosa can synthesize the potent greenhouse gas N2O using nitrite as substrate. Our findings have broad environmental implications because M. aeruginosa is globally found in freshwater ecosystems and is often the dominant species found in algae blooms. Further research is now needed to determine the occurrence and significance of N2O emissions from ecosystems rich with M. aeruginosa.
Fanny Noirmain, Jean-Luc Baray, Frédéric Tridon, Philippe Cacault, Hermine Billard, Guillaume Voyard, Joël Van Baelen, and Delphine Latour
Biogeosciences, 19, 5729–5749, https://doi.org/10.5194/bg-19-5729-2022, https://doi.org/10.5194/bg-19-5729-2022, 2022
Short summary
Short summary
We present a study linking rain, meteorology, and mountain lake phytoplankton dynamics on the basis of a case study at Aydat (France) in September 2020. The air mass origin mainly influences the rain chemical composition, which depends on the type of rain, convective or stratiform. Our results also highlighted a non-negligible presence of photosynthetic cells in rainwater. The impact of the atmospheric forcing on the lake could play a key role in phytoplankton dynamics in the temperate zone.
Sarah A. Brown, John Paul Balmonte, Adrienne Hoarfrost, Sherif Ghobrial, and Carol Arnosti
Biogeosciences, 19, 5617–5631, https://doi.org/10.5194/bg-19-5617-2022, https://doi.org/10.5194/bg-19-5617-2022, 2022
Short summary
Short summary
Bacteria use extracellular enzymes to cut large organic matter to sizes small enough for uptake. We compared the enzymatic response of surface, mid-water, and deep-ocean bacteria to complex natural substrates. Bacteria in surface and mid-depth waters produced a much wider range of enzymes than those in the deep ocean and may therefore consume a broader range of organic matter. The extent to which organic matter is recycled by bacteria depends in part on its residence time at different depths.
Aaron Ferderer, Zanna Chase, Fraser Kennedy, Kai G. Schulz, and Lennart T. Bach
Biogeosciences, 19, 5375–5399, https://doi.org/10.5194/bg-19-5375-2022, https://doi.org/10.5194/bg-19-5375-2022, 2022
Short summary
Short summary
Ocean alkalinity enhancement has the capacity to remove vast quantities of carbon from the atmosphere, but its effect on marine ecosystems is largely unknown. We assessed the effect of increased alkalinity on a coastal phytoplankton community when seawater was equilibrated and not equilibrated with atmospheric CO2. We found that the phytoplankton community was moderately affected by increased alkalinity and equilibration with atmospheric CO2 had little influence on this effect.
Quentin Devresse, Kevin W. Becker, Arne Bendinger, Johannes Hahn, and Anja Engel
Biogeosciences, 19, 5199–5219, https://doi.org/10.5194/bg-19-5199-2022, https://doi.org/10.5194/bg-19-5199-2022, 2022
Short summary
Short summary
Eddies are ubiquitous in the ocean and alter physical, chemical, and biological processes. However, how they affect organic carbon production and consumption is largely unknown. Here we show how an eddy triggers a cascade effect on biomass production and metabolic activities of phyto- and bacterioplankton. Our results may contribute to the improvement of biogeochemical models used to estimate carbon fluxes in the ocean.
Sania Arif, Heiko Nacke, Elias Schliekmann, Andreas Reimer, Gernot Arp, and Michael Hoppert
Biogeosciences, 19, 4883–4902, https://doi.org/10.5194/bg-19-4883-2022, https://doi.org/10.5194/bg-19-4883-2022, 2022
Short summary
Short summary
The natural enrichment of Chloroflexi (Ktedonobacteria) at the Kilianstollen Marsberg copper mine rocks being exposed to the acidic sulfate-rich leachate led to an investigation of eight metagenomically assembled genomes (MAGs) involved in copper and other transition heavy metal resistance in addition to low pH resistance and aromatic compounds degradation. The present study offers functional insights about a novel cold-adapted Ktedonobacteria MAG extremophily along with other phyla MAGs.
Chunmei Zhang, Huirong Li, Yinxin Zeng, Haitao Ding, Bin Wang, Yangjie Li, Zhongqiang Ji, Yonghong Bi, and Wei Luo
Biogeosciences, 19, 4639–4654, https://doi.org/10.5194/bg-19-4639-2022, https://doi.org/10.5194/bg-19-4639-2022, 2022
Short summary
Short summary
The unique microbial eukaryotic community structure and lower diversity have been demonstrated in five freshwater lakes of the Fildes Peninsula, Antarctica. Stochastic processes and biotic co-occurrence patterns were shown to be important in shaping microbial eukaryotic communities in the area. Our study provides a better understanding of the dynamic patterns and ecological assembly processes of microbial eukaryotic communities in Antarctic oligotrophic lakes (Fildes Peninsula).
Juan Pablo Almeida, Nicholas P. Rosenstock, Susanne K. Woche, Georg Guggenberger, and Håkan Wallander
Biogeosciences, 19, 3713–3726, https://doi.org/10.5194/bg-19-3713-2022, https://doi.org/10.5194/bg-19-3713-2022, 2022
Short summary
Short summary
Fungi living in symbiosis with tree roots can accumulate belowground, forming special tissues than can repel water. We measured the water repellency of organic material incubated belowground and correlated it with fungal growth. We found a positive association between water repellency and root symbiotic fungi. These results are important because an increase in soil water repellency can reduce the release of CO2 from soils into the atmosphere and mitigate the effects of greenhouse gasses.
Karen M. Brandenburg, Björn Rost, Dedmer B. Van de Waal, Mirja Hoins, and Appy Sluijs
Biogeosciences, 19, 3305–3315, https://doi.org/10.5194/bg-19-3305-2022, https://doi.org/10.5194/bg-19-3305-2022, 2022
Short summary
Short summary
Reconstructions of past CO2 concentrations rely on proxy estimates, with one line of proxies relying on the CO2-dependence of stable carbon isotope fractionation in marine phytoplankton. Culturing experiments provide insights into which processes may impact this. We found, however, that the methods with which these culturing experiments are performed also influence 13C fractionation. Caution should therefore be taken when extrapolating results from these experiments to proxy applications.
Weilin Huang, Peter M. van Bodegom, Toni Viskari, Jari Liski, and Nadejda A. Soudzilovskaia
Biogeosciences, 19, 1469–1490, https://doi.org/10.5194/bg-19-1469-2022, https://doi.org/10.5194/bg-19-1469-2022, 2022
Short summary
Short summary
This work focuses on one of the essential pathways of mycorrhizal impact on C cycles: the mediation of plant litter decomposition. We present a model based on litter chemical quality which precludes a conclusive examination of mycorrhizal impacts on soil C. It improves long-term decomposition predictions and advances our understanding of litter decomposition dynamics. It creates a benchmark in quantitatively examining the impacts of plant–microbe interactions on soil C dynamics.
Julie Dinasquet, Estelle Bigeard, Frédéric Gazeau, Farooq Azam, Cécile Guieu, Emilio Marañón, Céline Ridame, France Van Wambeke, Ingrid Obernosterer, and Anne-Claire Baudoux
Biogeosciences, 19, 1303–1319, https://doi.org/10.5194/bg-19-1303-2022, https://doi.org/10.5194/bg-19-1303-2022, 2022
Short summary
Short summary
Saharan dust deposition of nutrients and trace metals is crucial to microbes in the Mediterranean Sea. Here, we tested the response of microbial and viral communities to simulated dust deposition under present and future conditions of temperature and pH. Overall, the effect of the deposition was dependent on the initial microbial assemblage, and future conditions will intensify microbial responses. We observed effects on trophic interactions, cascading all the way down to viral processes.
Ralf Conrad, Pengfei Liu, and Peter Claus
Biogeosciences, 18, 6533–6546, https://doi.org/10.5194/bg-18-6533-2021, https://doi.org/10.5194/bg-18-6533-2021, 2021
Short summary
Short summary
Acetate is an important intermediate during the anaerobic degradation of organic matter. It is consumed by methanogenic and sulfidogenic microorganisms accompanied by stable carbon isotope fractionation. We determined isotope fractionation under different conditions in two paddy soils and two lake sediments and also determined the composition of the microbial communities. Despite a relatively wide range of experimental conditions, the range of fractionation factors was quite moderate.
Natalie R. Cohen, Abigail E. Noble, Dawn M. Moran, Matthew R. McIlvin, Tyler J. Goepfert, Nicholas J. Hawco, Christopher R. German, Tristan J. Horner, Carl H. Lamborg, John P. McCrow, Andrew E. Allen, and Mak A. Saito
Biogeosciences, 18, 5397–5422, https://doi.org/10.5194/bg-18-5397-2021, https://doi.org/10.5194/bg-18-5397-2021, 2021
Short summary
Short summary
A previous study documented an intense hydrothermal plume in the South Pacific Ocean; however, the iron release associated with this plume and the impact on microbiology were unclear. We describe metal concentrations associated with multiple hydrothermal plumes in this region and protein signatures of plume-influenced microbes. Our findings demonstrate that resources released from these systems can be transported away from their source and may alter the physiology of surrounding microbes.
Sabyasachi Bhattacharya, Tarunendu Mapder, Svetlana Fernandes, Chayan Roy, Jagannath Sarkar, Moidu Jameela Rameez, Subhrangshu Mandal, Abhijit Sar, Amit Kumar Chakraborty, Nibendu Mondal, Sumit Chatterjee, Bomba Dam, Aditya Peketi, Ranadhir Chakraborty, Aninda Mazumdar, and Wriddhiman Ghosh
Biogeosciences, 18, 5203–5222, https://doi.org/10.5194/bg-18-5203-2021, https://doi.org/10.5194/bg-18-5203-2021, 2021
Short summary
Short summary
Physicochemical determinants of microbiome architecture across continental shelves–slopes are unknown, so we explored the geomicrobiology along 3 m sediment horizons of seasonal (shallow coastal) and perennial (deep sea) hypoxic zones of the Arabian Sea. Nature, concentration, and fate of the organic matter delivered to the sea floor were found to shape the microbiome across the western Indian margin, under direct–indirect influence of sedimentation rate and water column O2 level.
Aditi Sengupta, Sarah J. Fansler, Rosalie K. Chu, Robert E. Danczak, Vanessa A. Garayburu-Caruso, Lupita Renteria, Hyun-Seob Song, Jason Toyoda, Jacqueline Hager, and James C. Stegen
Biogeosciences, 18, 4773–4789, https://doi.org/10.5194/bg-18-4773-2021, https://doi.org/10.5194/bg-18-4773-2021, 2021
Short summary
Short summary
Conceptual models link microbes with the environment but are untested. We test a recent model using riverbed sediments. We exposed sediments to disturbances, going dry and becoming wet again. As the length of dry conditions got longer, there was a sudden shift in the ecology of microbes, chemistry of organic matter, and rates of microbial metabolism. We propose a new model based on feedbacks initiated by disturbance that cascade across biological, chemical, and functional aspects of the system.
Cora Hörstmann, Eric J. Raes, Pier Luigi Buttigieg, Claire Lo Monaco, Uwe John, and Anya M. Waite
Biogeosciences, 18, 3733–3749, https://doi.org/10.5194/bg-18-3733-2021, https://doi.org/10.5194/bg-18-3733-2021, 2021
Short summary
Short summary
Microbes are the main drivers of productivity and nutrient cycling in the ocean. We present a combined approach assessing C and N uptake and microbial community diversity across ecological provinces in the Southern Ocean and southern Indian Ocean. Provinces showed distinct genetic fingerprints, but microbial activity varied gradually across regions, correlating with nutrient concentrations. Our study advances the biogeographic understanding of microbial diversity across C and N uptake regimes.
Nimrod Wieler, Tali Erickson Gini, Osnat Gillor, and Roey Angel
Biogeosciences, 18, 3331–3342, https://doi.org/10.5194/bg-18-3331-2021, https://doi.org/10.5194/bg-18-3331-2021, 2021
Short summary
Short summary
Biological rock crusts (BRCs) are common microbial-based assemblages covering rocks in drylands. BRCs play a crucial role in arid environments because of the limited activity of plants and soil. Nevertheless, BRC development rates have never been dated. Here we integrated archaeological, microbiological and geological methods to provide a first estimation of the growth rate of BRCs under natural conditions. This can serve as an affordable dating tool in archaeological sites in arid regions.
Michal Elul, Maxim Rubin-Blum, Zeev Ronen, Itay Bar-Or, Werner Eckert, and Orit Sivan
Biogeosciences, 18, 2091–2106, https://doi.org/10.5194/bg-18-2091-2021, https://doi.org/10.5194/bg-18-2091-2021, 2021
Mindaugas Zilius, Irma Vybernaite-Lubiene, Diana Vaiciute, Donata Overlingė, Evelina Grinienė, Anastasija Zaiko, Stefano Bonaglia, Iris Liskow, Maren Voss, Agneta Andersson, Sonia Brugel, Tobia Politi, and Paul A. Bukaveckas
Biogeosciences, 18, 1857–1871, https://doi.org/10.5194/bg-18-1857-2021, https://doi.org/10.5194/bg-18-1857-2021, 2021
Short summary
Short summary
In fresh and brackish waters, algal blooms are often dominated by cyanobacteria, which have the ability to utilize atmospheric nitrogen. Cyanobacteria are also unusual in that they float to the surface and are dispersed by wind-driven currents. Their patchy and dynamic distribution makes it difficult to track their abundance and quantify their effects on nutrient cycling. We used remote sensing to map the distribution of cyanobacteria in a large Baltic lagoon and quantify their contributions.
Saly Jaber, Muriel Joly, Maxence Brissy, Martin Leremboure, Amina Khaled, Barbara Ervens, and Anne-Marie Delort
Biogeosciences, 18, 1067–1080, https://doi.org/10.5194/bg-18-1067-2021, https://doi.org/10.5194/bg-18-1067-2021, 2021
Short summary
Short summary
Our study is of interest to atmospheric scientists and environmental microbiologists, as we show that clouds can be considered a medium where bacteria efficiently degrade and transform amino acids, in competition with chemical processes. As current atmospheric multiphase models are restricted to chemical degradation of organic compounds, our conclusions motivate further model development.
Kahina Djaoudi, France Van Wambeke, Aude Barani, Nagib Bhairy, Servanne Chevaillier, Karine Desboeufs, Sandra Nunige, Mohamed Labiadh, Thierry Henry des Tureaux, Dominique Lefèvre, Amel Nouara, Christos Panagiotopoulos, Marc Tedetti, and Elvira Pulido-Villena
Biogeosciences, 17, 6271–6285, https://doi.org/10.5194/bg-17-6271-2020, https://doi.org/10.5194/bg-17-6271-2020, 2020
Romie Tignat-Perrier, Aurélien Dommergue, Alban Thollot, Olivier Magand, Timothy M. Vogel, and Catherine Larose
Biogeosciences, 17, 6081–6095, https://doi.org/10.5194/bg-17-6081-2020, https://doi.org/10.5194/bg-17-6081-2020, 2020
Short summary
Short summary
The adverse atmospheric environmental conditions do not appear suited for microbial life. We conducted the first global comparative metagenomic analysis to find out if airborne microbial communities might be selected by their ability to resist these adverse conditions. The relatively higher concentration of fungi led to the observation of higher proportions of stress-related functions in air. Fungi might likely resist and survive atmospheric physical stress better than bacteria.
Yanhong Lu, Shunyan Cheung, Ling Chen, Shuh-Ji Kao, Xiaomin Xia, Jianping Gan, Minhan Dai, and Hongbin Liu
Biogeosciences, 17, 6017–6032, https://doi.org/10.5194/bg-17-6017-2020, https://doi.org/10.5194/bg-17-6017-2020, 2020
Short summary
Short summary
Through a comprehensive investigation, we observed differential niche partitioning among diverse ammonia-oxidizing archaea (AOA) sublineages in a typical subtropical estuary. Distinct AOA communities observed at DNA and RNA levels suggested that a strong divergence in ammonia-oxidizing activity among different AOA groups occurs. Our result highlights the importance of identifying major ammonia oxidizers at RNA level in future studies.
Anna-Neva Visser, Scott D. Wankel, Pascal A. Niklaus, James M. Byrne, Andreas A. Kappler, and Moritz F. Lehmann
Biogeosciences, 17, 4355–4374, https://doi.org/10.5194/bg-17-4355-2020, https://doi.org/10.5194/bg-17-4355-2020, 2020
Short summary
Short summary
This study focuses on the chemical reaction between Fe(II) and nitrite, which has been reported to produce high levels of the greenhouse gas N2O. We investigated the extent to which dead biomass and Fe(II) minerals might enhance this reaction. Here, nitrite reduction was highest when both additives were present but less pronounced if only Fe(II) minerals were added. Both reaction systems show distinct differences, rather low N2O levels, and indicated the abiotic production of N2.
Lisa Tanet, Séverine Martini, Laurie Casalot, and Christian Tamburini
Biogeosciences, 17, 3757–3778, https://doi.org/10.5194/bg-17-3757-2020, https://doi.org/10.5194/bg-17-3757-2020, 2020
Short summary
Short summary
Bioluminescent bacteria, the most abundant light-emitting organisms in the ocean, can be free-living, be symbiotic or colonize organic particles. This review suggests that they act as a visual target and may indirectly influence the sequestration of biogenic carbon in oceans by increasing the attraction rate for consumers. We summarize the instrumentation available to quantify this impact in future studies and propose synthetic figures integrating these ecological and biogeochemical concepts.
Michael Lintner, Bianca Biedrawa, Julia Wukovits, Wolfgang Wanek, and Petra Heinz
Biogeosciences, 17, 3723–3732, https://doi.org/10.5194/bg-17-3723-2020, https://doi.org/10.5194/bg-17-3723-2020, 2020
Short summary
Short summary
Foraminifera are unicellular marine organisms that play an important role in the marine element cycle. Changes of environmental parameters such as salinity or temperature have a significant impact on the faunal assemblages. Our experiments show that changing salinity in the German Wadden Sea immediately influences the foraminiferal community. It seems that A. tepida is better adapted to salinity fluctuations than H. germanica.
Kathrin Busch, Ulrike Hanz, Furu Mienis, Benjamin Mueller, Andre Franke, Emyr Martyn Roberts, Hans Tore Rapp, and Ute Hentschel
Biogeosciences, 17, 3471–3486, https://doi.org/10.5194/bg-17-3471-2020, https://doi.org/10.5194/bg-17-3471-2020, 2020
Short summary
Short summary
Seamounts are globally abundant submarine structures that offer great potential to study the impacts and interactions of environmental gradients at a single geographic location. In an exemplary way, we describe potential mechanisms by which a seamount can affect the structure of pelagic and benthic (sponge-)associated microbial communities. We conclude that the geology, physical oceanography, biogeochemistry, and microbiology of seamounts are even more closely linked than currently appreciated.
Alexander Bratek, Justus E. E. van
Beusekom, Andreas Neumann, Tina Sanders, Jana Friedrich, Kay-Christian Emeis, and Kirstin Dähnke
Biogeosciences, 17, 2839–2851, https://doi.org/10.5194/bg-17-2839-2020, https://doi.org/10.5194/bg-17-2839-2020, 2020
Short summary
Short summary
The following paper highlights the importance of benthic N-transformation rates in different sediment types in the southern North Sea as a source of fixed nitrogen for primary producers and also as a sink of fixed nitrogen. Sedimentary fluxes of dissolved inorganic nitrogen support ∼7 to 59 % of the average annual primary production. Semi-permeable and permeable sediments contribute ∼68 % of the total benthic N2 production rates, counteracting eutrophication in the southern North Sea.
Sabine Haalboom, David M. Price, Furu Mienis, Judith D. L. van Bleijswijk, Henko C. de Stigter, Harry J. Witte, Gert-Jan Reichart, and Gerard C. A. Duineveld
Biogeosciences, 17, 2499–2519, https://doi.org/10.5194/bg-17-2499-2020, https://doi.org/10.5194/bg-17-2499-2020, 2020
Short summary
Short summary
Mineral mining in deep-sea hydrothermal settings will lead to the formation of plumes of fine-grained, chemically reactive, suspended matter. Understanding how natural hydrothermal plumes evolve as they disperse from their source, and how they affect their surrounding environment, may help in characterising the behaviour of the diluted part of mining plumes. The natural plume provided a heterogeneous, geochemically enriched habitat conducive to the development of a distinct microbial ecology.
Noelle A. Held, Eric A. Webb, Matthew M. McIlvin, David A. Hutchins, Natalie R. Cohen, Dawn M. Moran, Korinna Kunde, Maeve C. Lohan, Claire Mahaffey, E. Malcolm S. Woodward, and Mak A. Saito
Biogeosciences, 17, 2537–2551, https://doi.org/10.5194/bg-17-2537-2020, https://doi.org/10.5194/bg-17-2537-2020, 2020
Short summary
Short summary
Trichodesmium is a globally important marine nitrogen fixer that stimulates primary production in the surface ocean. We surveyed metaproteomes of Trichodesmium populations across the North Atlantic and other oceans, and we found that they experience simultaneous phosphate and iron stress because of the biophysical limits of nutrient uptake. Importantly, nitrogenase was most abundant during co-stress, indicating the potential importance of this phenotype to global nitrogen and carbon cycling.
Helmke Hepach, Claire Hughes, Karen Hogg, Susannah Collings, and Rosie Chance
Biogeosciences, 17, 2453–2471, https://doi.org/10.5194/bg-17-2453-2020, https://doi.org/10.5194/bg-17-2453-2020, 2020
Short summary
Short summary
Tropospheric iodine takes part in numerous atmospheric chemical cycles, including tropospheric ozone destruction and aerosol formation. Due to its significance for atmospheric processes, it is crucial to constrain its sources and sinks. This paper aims at investigating and understanding features of biogenic iodate-to-iodide reduction in microalgal monocultures. We find that phytoplankton senescence may play a crucial role in the release of iodide to the marine environment.
Roger D. Finlay, Shahid Mahmood, Nicholas Rosenstock, Emile B. Bolou-Bi, Stephan J. Köhler, Zaenab Fahad, Anna Rosling, Håkan Wallander, Salim Belyazid, Kevin Bishop, and Bin Lian
Biogeosciences, 17, 1507–1533, https://doi.org/10.5194/bg-17-1507-2020, https://doi.org/10.5194/bg-17-1507-2020, 2020
Short summary
Short summary
Effects of biological activity on mineral weathering operate at scales ranging from short-term, microscopic interactions to global, evolutionary timescale processes. Microorganisms have had well-documented effects at large spatio-temporal scales, but to establish the quantitative significance of microscopic measurements for field-scale processes, higher-resolution studies of liquid chemistry at local weathering sites and improved upscaling to soil-scale dissolution rates are still required.
Christine Rooks, James Kar-Hei Fang, Pål Tore Mørkved, Rui Zhao, Hans Tore Rapp, Joana R. Xavier, and Friederike Hoffmann
Biogeosciences, 17, 1231–1245, https://doi.org/10.5194/bg-17-1231-2020, https://doi.org/10.5194/bg-17-1231-2020, 2020
Short summary
Short summary
Sponge grounds are known as nutrient sources, providing nitrate and ammonium to the ocean. We found that they also can do the opposite: in six species from Arctic and North Atlantic sponge grounds, we measured high rates of denitrification, which remove these nutrients from the sea. Rates were highest when the sponge tissue got low in oxygen, which happens when sponges stop pumping because of stress. Sponge grounds may become nutrient sinks when exposed to stress.
Cited articles
Anning, T., Nimer, N., Merrett, M. J., and Brownlee, C.: Costs and benefits of calcification in coccolithophorids, J. Marine Syst., 9, 45–56, https://doi.org/10.1016/0924-7963(96)00015-2, 1996.
Atkinson, D., Ciotti, B. J., and Montagnes, D. J. S.: Protists decrease in size linearly with temperature: ca. 2.5 % degrees C-1, P. Roy. Soc. Lond. B Bio., 270, 2605–2611, https://doi.org/10.1098/rspb.2003.2538, 2003.
Bach, L. T., Mackinder, L. C. M., Schulz, K. G., Wheeler, G., Schroeder, D. C., Brownlee, C., and Riebesell, U.: Dissecting the impact of CO2 and pH on the mechanisms of photosynthesis and calcification in the coccolithophore Emiliania huxleyi, New Phytol., 199, 121–134, https://doi.org/10.1111/nph.12225, 2013.
Bach, L. T., Riebesell, U., Gutowska, M. A., Federwisch, L., and Schulz, K. G.: A unifying concept of coccolithophore sensitivity to changing carbonate chemistry embedded in an ecological framework, Prog. Oceanogr., 135, 125–138, https://doi.org/10.1016/j.pocean.2015.04.012, 2015.
Balch, W. M., Holligan, P. M., Ackleson, S. G., and Voss, K. J.: Biological and optical properties of mesoscale coccolithophore blooms in the Gulf of Maine, Limnol. Oceanogr., 36, 629–643, 1991.
Balch, W. M., Holligan, P. M., and Kilpatrick, K. A.: Calcification, photosynthesis and growth of the bloom-forming coccolithophore, Emiliania huxleyi, Cont. Shelf Res., 12, 1353–1374, https://doi.org/10.1016/0278-4343(92)90059-s, 1992.
Beardall, J. and Raven, J. A.: The potential effects of global climate change on microalgal photosynthesis, growth and ecology, Phycologia, 43, 26–40, https://doi.org/10.2216/i0031-8884-43-1-26.1, 2004.
Beardall, J., Allen, D., Bragg, J., Finkel, Z. V., Flynn, K. J., Quigg, A., Rees, T. A. V., Richardson, A., and Raven, J. A.: Allometry and stoichiometry of unicellular, colonial and multicellular phytoplankton, New Phytol., 181, 295–309, https://doi.org/10.1111/j.1469-8137.2008.02660.x, 2009.
Blanco-Ameijeiras, S., Lebrato, M., Stoll, H. M., Iglesias-Rodriguez, D., Müller, M. N., Méndez-Vicente, A., and Oschlies, A.: Phenotypic variability in the Coccolithophore Emiliania huxleyi, PLoS ONE, 11, e0157697, https://doi.org/10.1371/journal.pone.0157697, 2016.
Bopp, L., Monfray, P., Aumont, O., Dufresne, J. L., Le Treut, H., Madec, G., Terray, L., and Orr, J. C.: Potential impact of climate change on marine export production, Global Biogeochem. Cy., 15, 81–99, https://doi.org/10.1029/1999gb001256, 2001.
Boyd, P. W. and Doney, S. C.: Modelling regional responses by marine pelagic ecosystems to global climate change, Geophys. Res. Lett., 29, 1806, https://doi.org/10.1029/2001gl014130, 2002.
Boyd, P. W. and Law, C. S.: A climate change atlas for the New Zealand exclusive economic zone, National Institute of Water and Atmosphere (NIWA) Information Series, Wellington, New Zealand, 22 pp., 2011.
Boyd, P. W. and Hutchins, D. A.: Understanding the responses of ocean biota to a complex matrix of cumulative anthropogenic change, Mar. Ecol.-Prog. Ser., 470, 125–135, https://doi.org/10.3354/meps10121, 2012.
Boyd, P. W., Strzepek, R., Fu, F. X., and Hutchins, D. A.: Environmental control of open-ocean phytoplankton groups: Now and in the future, Limnol. Oceanogr., 55, 1353–1376, https://doi.org/10.4319/lo.2010.55.3.1353, 2010.
Boyd, P. W., Dillingham, P. W., McGraw, C. M., Armstrong, E. A., Cornwall, C. E., Feng, Y., Hurd, C. L., Gault-Ringold, M., Roleda, M. Y. Timmins-Schiffman, E., and Nunn, B. L.: Physiological responses of a Southern Ocean diatom to complex future ocean conditions, Nat. Clim. Change, 6, 207–213, https://doi.org/10.1038/nclimate2811, 2016.
Burkhardt, S. and Riebesell, U.: CO2 availability affects elemental composition (C : N : P) of the marine diatom Skeletonema costatum, Mar. Ecol.-Prog. Ser., 155, 67–76, https://doi.org/10.3354/meps155067, 1997.
Burkhardt, S., Zondervan, I., and Riebesell, U.: Effect of CO2 concentration on C : N : P ratio in marine phytoplankton: a species comparison, Limnol. Oceanogr., 44, 683–690, 1999.
Clark, D. R. and Flynn, K. J.: The relationship between the dissolved inorganic carbon concentration and growth rate in marine phytoplankton, P. Roy. Soc. Lond. B Bio., 267, 953–959, 2000.
Cook, S. S., Whitlock, L., Wright, S. W., and Hallegraeff, G. M.: Photosynthetic pigment and genetic differences between two southern ocean morphotypes of Emiliania huxleyi (Haptophyta), J. Phycol., 47, 615–626, https://doi.org/10.1111/j.1529-8817.2011.00992.x, 2011.
De Bodt, C., Van Oostende, N., Harlay, J., Sabbe, K., and Chou, L.: Individual and interacting effects of pCO2 and temperature on Emiliania huxleyi calcification: study of the calcite production, the coccolith morphology and the coccosphere size, Biogeosciences, 7, 1401–1412, https://doi.org/10.5194/bg-7-1401-2010, 2010.
Engel, A., Barcelos e Ramos, J., Geider, R., Hutchins, D. A., Lee, C., Rost, B., Röttgers, R., and Thingstad, F.: Production and export of organic matter, in: Guide to Best Practices for Ocean Acidification Research and Data Reporting, edited by: Riebesell, U., Fabry, V. J., Hansson, L., and Gattuso, J. P., Publications Office of the European Union, Luxembourg, 181–200, 2010.
Engel, A., Novoa, C. C., Wurst, M., Endres, S., Tang, T., Schartau, M., and Lee, C.: No detectable effect of CO2 on elemental stoichiometry of Emiliania huxleyi in nutrient-limited, acclimated continuous cultures, Mar. Ecol.-Prog. Ser., 507, 15–30, https://doi.org/10.3354/meps10824, 2014.
Fabry, V. L. and Balch, W. M.: Direct measurements of calcification rates in planktonic organisms, in: Guide for Best Practices in Ocean Acidification Research and Data Reporting, edited by: Riebesell, U., Fabry, V. L., Hansson, L., and Gattuso, J. P., Publications Office of the European Union, Luxembourg, 201–212, 2010.
Feng, Y., Warner, M. E., Zhang, Y., Sun, J., Fu, F. X., Rose, J. M., and Hutchins, D. A.: Interactive effects of increased pCO2, temperature and irradiance on the marine coccolithophore Emiliania huxleyi (Prymnesiophyceae), Eur. J. Phycol., 43, 87–98, https://doi.org/10.1080/09670260701664674, 2008.
Feng, Y., Roleda, M. Y., Armstrong, E. A., Boyd, P. W., and Hurd, C. L.: Environmental controls on the growth, photosynthetic and calcification rates of a Southern Hemisphere strain of the coccolithophore Emiliania huxleyi, Limnol. Oceanogr., 62, 519–540, https://doi.org/10.1002/lno.10442, 2017.
Feng, Y., Roleda, M. Y., Armstrong, E., Law, C. S., Boyd, P. W., and Hurd, C. L.: Seawater carbonate chemistry and elemental composition of a southern hemisphere strain of coccolithophore Emiliania huxleyi, PANGAEA, https://doi.org/10.1594/PANGAEA.885410, 2018.
Finkel, Z. V., Beardall, J., Flynn, K. J., Quigg, A., Rees, T. A. V., and Raven, J. A.: Phytoplankton in a changing world: cell size and elemental stoichiometry, J. Plankton Res., 32, 119–137, https://doi.org/10.1093/plankt/fbp098, 2010.
Fritz, J. J.: Carbon fixation and coccolith detachment in the coccolithophore Emiliania huxleyi in nitrate-limited cyclostats, Mar. Biol., 133, 509–518, https://doi.org/10.1007/s002270050491, 1999.
Fu, F. X., Warner, M. E., Zhang, Y. H., Feng, Y. Y., and Hutchins, D. A.: Effects of increased temperature and CO2 on photosynthesis, growth, and elemental ratios in marine Synechococcus and Prochlorococcus (Cyanobacteria), J. Phycol., 43, 485–496, https://doi.org/10.1111/j.1529-8817.2007.00355.x, 2007.
Fu, F. X., Zhang, Y. H., Warner, M. E., Feng, Y. Y., Sun, J., and Hutchins, D. A.: A comparison of future increased CO2 and temperature effects on sympatric Heterosigma akashiwo and Prorocentrum minimum, Harmful Algae, 7, 76–90, https://doi.org/10.1016/j.hal.2007.05.006, 2008.
Gardner, J. L., Peters, A., Kearney, M. R., Joseph, L., and Heinsohn, R.: Declining body size: a third universal response to warming?, Trends Ecol. Evol., 26, 285–291, https://doi.org/10.1016/j.tree.2011.03.005, 2011.
Geider, R. J.: Light and temperature-dependence of the carbon to chlorophyll-a ratio in microalgae and cyanobacteria – implications for physiology and growth of phytoplankton, New Phytol., 106, 1–34, https://doi.org/10.1111/j.1469-8137.1987.tb04788.x, 1987.
Geider, R. J., MacIntyre, H. L., and Kana, T. M.: A dynamic regulatory model of phytoplanktonic acclimation to light, nutrients, and temperature, Limnol. Oceanogr., 43, 679–694, 1998.
Gerecht, A. C., Šupraha, L., Edvardsen, B., Probert, I., and Henderiks, J.: High temperature decreases the PIC ∕ POC ratio and increases phosphorus requirements in Coccolithus pelagicus (Haptophyta), Biogeosciences, 11, 3531–3545, https://doi.org/10.5194/bg-11-3531-2014, 2014.
Goldman, J. C.: On phytoplankton growth-rates and particulate C : N : P ratios at low light, Limnol. Oceanogr., 31, 1358–1363, 1986.
Guillard, R. R. and Ryther, J. H.: Studies of marine planktonic diatoms.1. Cyclotella nana (Hustet), and Detonula confevacea (Cleve Gran), Can. J. Microbiol., 8, 229–239, 1962.
Hecky, R. E., Campbell, P., and Hendzel, L. L.: The stoichiometry of carbon, nitrogen, and phosphorus in particulate matter of lakes and oceans, Limnol. Oceanogr., 38, 709–724, 1993.
Ho, T. Y., Quigg, A., Finkel, Z. V., Milligan, A. J., Wyman, K., Falkowski, P. G., and Morel, F. M. M.: The elemental composition of some marine phytoplankton, J. Phycol., 39, 1145–1159, https://doi.org/10.1111/j.0022-3646.2003.03-090.x, 2003.
Holligan, P. M., Viollier, M., Harbour, D. S., Camus, P., and Champagnephilippe, M.: Satellite and ship studies of coccolithophore production along a continetal-shelf edge, Nature, 304, 339–342, https://doi.org/10.1038/304339a0, 1983.
Holligan, P. M., Fernandez, E., Aiken, J., Balch, W. M., Boyd, P., Burkill, P. H., Finch, M., Groom, S. B., Malin, G., Muller, K., Purdie, D. A., Robinson, C., Trees, C. C., Turner, S. M., and Vanderwal, P.: A biogeochemical study of the coccolithophore, Emiliania huxleyi, in the North Atlantic, Global Biogeochem. Cy., 7, 879–900, https://doi.org/10.1029/93gb01731, 1993.
Jones, R. H. and Flynn, K. J.: Nutritional status and diet composition affect the value of diatoms as copepod prey, Science, 307, 1457–1459, https://doi.org/10.1126/science.1107767, 2005.
Kiefer, D. A.: Modelling growth and light absorption in the marine diatom Skeletonema costatum, in: Towards a Model of Ocean Biogeochemical Processes, edited by: Evans, G. T. and Fasham, M. J. R., 93–118, Springer-Verlag, Berlin, 1993.
Klaas, C. and Archer, D. E.: Association of sinking organic matter with various types of mineral ballast in the deep sea: Implications for the rain ratio, Global Biogeochem. Cy., 16, 1116, https://doi.org/10.1029/2001gb001765, 2002.
Langer, G., Nehrke, G., Probert, I., Ly, J., and Ziveri, P.: Strain-specific responses of Emiliania huxleyi to changing seawater carbonate chemistry, Biogeosciences, 6, 2637–2646, https://doi.org/10.5194/bg-6-2637-2009, 2009.
Law, C. S., Rickard, G. J., Mikaloff-Fletcher, S. E., Pinkerton, M. H., Gorman, R., Behrens, E., Chiswell, S. M., Bostock, H. C., Anderson, O., and Currie, K.: The New Zealand EEZ and South West Pacific. Synthesis Report RA2, Marine Case Study, in: Climate Changes, Impacts and Implications (CCII) for New Zealand to 2100, MBIE contract C01X1225, 40 pp., 2016.
Müller, M. N., Antia, A. N., and LaRoche, J.: Influence of cell cycle phase on calcification in the coccolithophore Emiliania huxleyi, Limnol. Oceanogr., 53, 506–512, https://doi.org/10.4319/lo.2008.53.2.0506, 2008.
Müller, M. N., Trull, T. W., and Hallegraeff, G. M.: Differing responses of three Southern Ocean Emiliania huxleyi ecotypes to changing seawater carbonate chemistry, Mar. Ecol.-Prog. Ser., 531, 81–90, https://doi.org/10.3354/meps11309, 2015.
Paasche, E.: A tracer study of the inorganic carbon uptake during coccolith formation and photosynthesis in the coccolithophorid Coccolithus huxleyi, Physiol. Plant. Suppl, 3, 1–82, 1964.
Paasche, E.: Effect of 3-(p-chlorophenyl)-1,1-dimethylurea (cmu) on photosynthesis and light-dependent coccolith formation in Coccolithus huxleyi, Physiol. Plant., 18, 138–145, https://doi.org/10.1111/j.1399-3054.1965.tb06876.x, 1965.
Paasche, E.: Roles of nitrogen and phosphorus in coccolith formation in Emiliania huxleyi (Prymnesiophyceae), Eur. J. Phycol., 33, 33–42, https://doi.org/10.1017/s0967026297001480, 1998.
Paasche, E., Brubak, S., Skattebol, S., Young, J. R., and Green, J. C.: Growth and calcification in the coccolithophorid Emiliania huxleyi (Haptophyceae) at low salinities, Phycologia, 35, 394–403, https://doi.org/10.2216/i0031-8884-35-5-394.1, 1996.
Perry, M. J.: Phosphate utilization by an oceanic diatom in phosphorus-limited chemostat culture and in oligotrophic waters of central North Pacific, Limnol. Oceanogr., 21, 88–107, 1976.
Polovina, J. J., Howell, E. A., and Abecassis, M.: Ocean's least productive waters are expanding, Geophys. Res. Lett., 35, L03618, https://doi.org/10.1029/2007GL031745, 2008.
Price, N. M.: The elemental stoichiometry and composition of an iron-limited diatom, Limnol. Oceanogr., 50, 1159–1171, 2005.
Raven, J. A. and Crawfurd, K.: Environmental controls on coccolithophore calcification, Mar. Ecol.-Prog. Ser., 470, 137–166, https://doi.org/10.3354/meps09993, 2012.
Raven, J. A. and Geider, R. J.: Temperature and algal growth, New Phytol., 110, 441–461, https://doi.org/10.1111/j.1469-8137.1988.tb00282.x, 1988.
Read, B. A., Kegel, J., Klute, M. J., Kuo, A., Lefebvre, S. C., Maumus, F., Mayer, C., Miller, J., Monier, A., Salamov, A., Young, J., Aguilar, M., Claverie, J. M., Frickenhaus, S., Gonzalez, K., Herman, E. K., Lin, Y. C., Napier, J., Ogata, H., Sarno, A. F., Shmutz, J., Schroeder, D., de Vargas, C., Verret, F., von Dassow, P., Valentin, K., Van de Peer, Y., Wheeler, G., Dacks, J. B., Delwiche, C. F., Dyhrman, S. T., Glockner, G., John, U., Richards, T., Worden, A. Z., Zhang, X. Y., and Grigoriev, I. V.: Pan genome of the phytoplankton Emiliania underpins its global distribution, Nature, 499, 209–213, https://doi.org/10.1038/nature12221, 2013.
Redfield, A. C., Ketchum, B. H., and Richards, F. A.: The influence of organisms on the composition of sea-water, in: The Sea. Ideas and observations on progress in the study of the seas. v2. The composition of sea-water. Comparative and descriptive oceanography, edited by: Hill, M. N., Interscience, London, 26–77, 1963.
Reinfelder, J. R.: Carbon Concentrating Mechanisms in Eukaryotic Marine Phytoplankton, Annu. Rev. Mar. Sci., 3, 291–315, https://doi.org/10.1146/annurev-marine-120709-142720, 2011.
Rickard, G. J., Behrens, E., and Chiswell, S. M.: CMIP5 earth system models with biogeochemistry: An assessment for the southwest Pacific Ocean, J. Geophys. Res.-Oceans, 121, 7857–7879, https://doi.org/10.1002/2016JC011736, 2016.
Riebesell, U., Revill, A. T., Holdsworth, D. G., and Volkman, J. K.: The effects of varying CO2 concentration on lipid composition and carbon isotope fractionation in Emiliania huxleyi, Geochim. Cosmochim. Ac., 64, 4179–4192, https://doi.org/10.1016/s0016-7037(00)00474-9, 2000.
Riebesell, U., Fabry, V. J., Hansson, L., and Gattuso, J.-P.: Guide to best practices for ocean acidification research and data reporting, Publications Office of the European Union, Luxembourg, 2010.
Riegman, R., Stolte, W., Noordeloos, A. A. M., and Slezak, D.: Nutrient uptake, and alkaline phosphate (EC 3 : 1 : 3 : 1) activity of Emiliania huxleyi (Prymnesiophyceae) during growth under N and P limitation in continuous cultures, J. Phycol., 36, 87–96, https://doi.org/10.1046/j.1529-8817.2000.99023.x, 2000.
Roleda, M. Y., Slocombe, S. P., Leakey, R. J. G., Bell, E. M., and Stanley, M. S.: Effects of temperature and nutrient regimes on biomass and lipid production by six oleaginous microalgea in batch culture employing a two-phase cultivation strategy, Bioresour. Technol., 129, 439–449, https://doi.org/10.1016/j.biortech.2012.11.043, 2013.
Rost, B. and Riebesell, U.: Coccolithophores and the biological pump: Responses to environmental changes, in: Coccolithophores: From Molecular Processes to Global Impact, Springer Science & Business Media, New York, edited by: Thierstein, H. R. and Young, J. R., 99–125, 2004.
Rost, B., Riebesell, U., Burkhardt, S., and Sültemeyer, D.: Carbon acquisition of bloom-forming marine phytoplankton, Limnol. Oceanogr., 48, 55–67, 2003.
Rost, B., Riebesell, U., and Sultemeyer, D.: Carbon acquisition of marine phytoplankton: Effect of photoperiod length, Limnol. Oceanogr., 51, 12–20, 2006.
Sakshaug, E. and Holmhansen, O.: Chemical composition of Skeletonema costatum (grev) cleve and pavlova (monochrysis) lutheri (droop) green as a function of nitrate-limited, phosphate-limited, and iron-limited growth, J. Exp. Mar. Biol. Ecol., 29, 1–34, https://doi.org/10.1016/0022-0981(77)90118-6, 1977.
Sardans, J., Rivas-Ubach, A., and Penuelas, J.: The C : N : P stoichiometry of organisms and ecosystems in a changing world: A review and perspectives, Perspect, Plant Ecol., 14, 33–47, https://doi.org/10.1016/j.ppees.2011.08.002, 2012.
Sett, S., Bach, L. T., Schulz, K. G., Koch-Klavsen, S., Lebrato, M., and Riebesell, U.: Temperature modulates coccolithophorid sensitivity of growth, photosynthesis and calcification to increasing seawater pCO2, PLoS One, 9, e88308, https://doi.org/10.1371/journal.pone.0088308, 2014.
Solórzano, L. and Sharp, J. H.: Determination of total dissolved phosphorus and particulate phosphorus in natural waters, Limnol. Oceanogr., 25, 756–760, 1980.
Sorrosa, J. M., Satoh, M., and Shiraiwa, Y.: Low temperature stimulates cell enlargement and intracellular calcification of Coccolithophorids, Mar. Biotechnol., 7, 128–133, https://doi.org/10.1007/s10126-004-0478-1, 2005.
Sterner, R. W. and Elser, J. J.: Ecological Stoichiometry: The Biology of Elements from Molecules to Biosphere, Princeton University Press, Princeton, 2002.
Stocker, T. F., Qin, D., Plattner, G.-K., Tignor, M., Allen, S. K., Boschung, J., Nauels, A., Xia, Y., Bex, V., and Midgley, P. M.: Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change, Cambridge University Press, Cambridge, UK and New York, NY, USA, 2013.
Stojkovic, S., Beardall, J., and Matear, R.: CO2 concentrating mechanisms in three southern hemisphere strains of Emiliania huxleyi, J. Phycol., 49, 670–679, 2013.
Toseland, A., Daines, S. J., Clark, J. R., Kirkham, A., Strauss, J., Uhlig, C., Lenton, T. M., Valentin, K., Pearson, G. A., Moulton, V., and Mock, T.: The impact of temperature on marine phytoplankton resource allocation and metabolism, Nat. Clim. Chang., 3, 979–984, https://doi.org/10.1038/nclimate1989, 2013.
van Rijssel, M. and Gieskes, W. W. C.: Temperature, light, and the dimethylsulfoniopropionate (DMSP) content of Emiliania huxleyi (Prymnesiophyceae), J. Sea Res., 48, 17–27, https://doi.org/10.1016/s1385-1101(02)00134-x, 2002.
Watabe, N. and Wilbur, K. M.: Effects of temperature on growth calcification and coccolith form in Coccolithus huxleyi (coccolithineae), Limnol. Oceanogr., 11, 567–575, 1966.
Welschmeyer, N. A.: Fluorometric analysis of chlorophyll a in the presence of chlorophyll b and pheopigments, Limnol. Oceanogr., 39, 1985–1992, 1994.
Westbroek, P., Brown, C. W., Vanbleijswijk, J., Brownlee, C., Brummer, G. J., Conte, M., Egge, J., Fernandez, E., Jordan, R., Knappertsbusch, M., Stefels, J., Veldhuis, M., Vanderwal, P., and Young, J.: A model system approach to biological climate forcing – the example of Emiliania huxleyi, Global Planet. Change, 8, 27–46, https://doi.org/10.1016/0921-8181(93)90061-r, 1993.
Young, J. R., Poulton, A. J., and Tyrrell, T.: Morphology of Emiliania huxleyi coccoliths on the northwestern European shelf – is there an influence of carbonate chemistry?, Biogeosciences, 11, 4771–4782, https://doi.org/10.5194/bg-11-4771-2014, 2014.
Zondervan, I.: The effects of light, macronutrients, trace metals and CO2 on the production of calcium carbonate and organic carbon in coccolithophores – a review, Deep-Sea Res. Pt. II, 54, 521–537, https://doi.org/10.1016/j.dsr2.2006.12.004, 2007.
Zondervan, I., Zeebe, R. E., Rost, B., and Riebesell, U.: Decreasing marine biogenic calcification: A negative feedback on rising atmospheric pCO2, Global Biogeochem. Cy., 15, 507–516, https://doi.org/10.1029/2000gb001321, 2001.
Zondervan, I., Rost, B., and Riebesell, U.: Effect of CO2 concentration on the PIC ∕ POC ratio in the coccolithophore Emiliania huxleyi grown under light-limiting conditions and different daylengths, J. Exp. Mar. Biol. Ecol., 272, 55–70, https://doi.org/10.1016/s0022-0981(02)00037-0, 2002.
Short summary
We conducted a series of incubation experiments to understand how the changes in five environmental drivers will affect the elemental composition of the calcifying phytoplankton species Emiliania huxleyi. These findings provide new diagnostic information to aid our understanding of how the physiology and the related marine biogeochemistry of the ecologically important species Emiliania huxleyi will respond to changes in different environmental drivers in the global climate change scenario.
We conducted a series of incubation experiments to understand how the changes in five...
Altmetrics
Final-revised paper
Preprint